<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:45:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212403" ref_strand="+" ref_description="SGN-E212403 [cLEC-74-H1]">
      <seq>ggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgaggtctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1409" stop="350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1109" g_stop="651" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="650" i_stop="466" i_length="185">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="465" g_stop="452" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="473" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E212403" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1109" e_stop="651"/>
          <exon e_start="465" e_stop="452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTCTAGTTACTATATCAAATCTCGAAATATTTCATTAATTGATTCTAGGAAATATCATCACCTCCTAATGCAAAGGAGAAGGAAATGAGTAATATTTAGACAAAAAAATGAAGGAAACAAACACAATGTGTTGATATATTAGGGGCATTGGATGCCTCCATTAATAATTTAACAGAAAAATGTCAAAGA</genome_strand>
        <mrna_strand>GGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGGTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAA.........................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266236" ref_strand="+" ref_description="SGN-E266236 [cLEI-3-M2]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaagtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaagaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1553" stop="347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1254" g_stop="636" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E266236" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1254" e_stop="636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTCTA</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAAGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAAGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551559" ref_strand="+" ref_description="SGN-E551559 [cTSB-1-B8]">
      <seq>aaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1557" stop="350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1257" g_stop="638" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E551559" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1257" e_stop="638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTC</genome_strand>
        <mrna_strand>AAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693557" ref_strand="+" ref_description="SGN-E693557 [LH_Ea01K03](-)">
      <seq>aaaaattctctcatcaatcctcattctcttcttcattttcactctattttcttcatcaaacgcattaggcggaaaactcggcggaagaacacaaatcaaagacgtgaaaacaaataaggaaattcaagatctaggtaagtactgcgtcgaagaacacaacagaaatttgcggtataaaaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcagctggttcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttctccggctaccaagtgaattttcgatggtttgatagtgggtaaaagttaaaacttctattagtgctaatgttgttcatctaattttgaagtactttaatttgtagcctttttatttttttaacaaggtttgagttctcttgtgtcctatgtgatgcaatacttaaatggatgacatatgtattagtatgttatttagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1526" stop="350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1226" g_stop="638" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E693557" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1226" e_stop="638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGG-TTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATA-ATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTC</genome_strand>
        <mrna_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCACTCTATTTTCTTCATCAAACGCATTAGGCGGAAAACTCGGCGGAAGAACACAAATCAAAGACGTGAAAACAAATAAGGAAATTCAAGATCTAGGTAAGTACTGCGTCGAAGAACACAACAGAAATTTGCGGTATAAAAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCAGCTGGTTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCTCCGGCTACCAAGTGAATTTTCGATGGTTTGATAGTGGGTAAAAGTTAAAACTTCTATTAGTGCTAATGTTG-TTCATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTA-TTTTTTTAACAAGGTTTGAGTTCTCTTGTGTCCTATGTGATGCAATACTTAAATGGATGACATATGTATTAGTATGTTATT-TAGATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553752" ref_strand="+" ref_description="SGN-E553752 [cTSC-2-B8]">
      <seq>aaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaagcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1557" stop="350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1257" g_stop="639" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E553752" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1257" e_stop="639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCT</genome_strand>
        <mrna_strand>AAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAAGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352697" ref_strand="+" ref_description="SGN-E352697 [cTOS-11-O16]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1553" stop="350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1254" g_stop="640" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E352697" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1254" e_stop="640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATC</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689717" ref_strand="+" ref_description="SGN-E689717 [LH_Ea01K03]">
      <seq>cattaaaaattctctcatcaatcctcattctcttcttcattttcactctattttcttcatcaaacgcattaggcggaaaactcggcggaagaacacaaatcaaagacgtgaaaacaaataaggaaattcaagatctaggtaagtactgcgtcgaagaacacaacagaaatttgcggtataaaaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcagctggttcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggtttgatagtggctaaaagttaaaacttctattagtgctaatgttgttcatctaattttgaagtactttaatttgtagcctttttatttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1526" stop="350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1230" g_stop="643" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E689717" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1230" e_stop="643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGG-TTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCT</genome_strand>
        <mrna_strand>CATTAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCACTCTATTTTCTTCATCAAACGCATTAGGCGGAAAACTCGGCGGAAGAACACAAATCAAAGACGTGAAAACAAATAAGGAAATTCAAGATCTAGGTAAGTACTGCGTCGAAGAACACAACAGAAATTTGCGGTATAAAAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCAGCTGGTTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTTGATAGTGGCTAAAAGTTAAAACTTCTATTAGTGCTAATGTTG-TTCATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTA-TTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352159" ref_strand="+" ref_description="SGN-E352159 [cTOS-13-A22]">
      <seq>tcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagatannnnnnnaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1449" stop="352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1149" g_stop="651" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="506" polyA_stop="528"/>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E352159" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1149" e_stop="651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAA</genome_strand>
        <mrna_strand>TCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553871" ref_strand="+" ref_description="SGN-E553871 [cTSC-2-H7]">
      <seq>aaaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttatttttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgttattatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1557" stop="353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1258" g_stop="653" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E553871" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1258" e_stop="653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTT-AACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGAT</genome_strand>
        <mrna_strand>AAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354030" ref_strand="+" ref_description="SGN-E354030 [cTOS-16-O19]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtattagtatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1553" stop="364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1254" g_stop="663" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E354030" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1254" e_stop="663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGT</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357600" ref_strand="+" ref_description="SGN-E357600 [cTOS-24-A5]">
      <seq>aaaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtaatgctaatggtggttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctaatttgagttctcctgtggactatgtgatgccataatccatgaatgacatatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1557" stop="370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1258" g_stop="670" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E357600" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1258" e_stop="670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATT</genome_strand>
        <mrna_strand>AAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAATGCTAATGGTGGTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTAATTTGAGTTCTCCTGTGGACTATGTGATGCCATAATCCATGAATGACATATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266444" ref_strand="+" ref_description="SGN-E266444 [cLEI-3-F2]">
      <seq>atccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattatcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagttcttctcaagttgttgaagcagaaaaacaagttgcttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactataatttgtagcctttttattttttttaacctatattgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1553" stop="370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1254" g_stop="670" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E266444" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1254" e_stop="670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATT</genome_strand>
        <mrna_strand>ATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTATCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTCTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGCTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTATAATTTGTAGCCTTTTTATTTTTTTTAACCTATATTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309170" ref_strand="+" ref_description="SGN-E309170 [cLEZ-12-E21]">
      <seq>aaaaaaatccccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagtaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactatgtgatgcaataatcaatgaatgacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1557" stop="374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1260" g_stop="674" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E309170" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1260" e_stop="674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATGTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATG</genome_strand>
        <mrna_strand>AAAAAAATCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAG-TAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348694" ref_strand="+" ref_description="SGN-E348694 [cTOF-30-F12]">
      <seq>tcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaatnntcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatggtgnttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctatttttgagtctcttgtgtactatgtgatgcantaatcaatgaatgacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1506" stop="375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1206" g_stop="675" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E348694" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1206" e_stop="675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATAT</genome_strand>
        <mrna_strand>TCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATNNTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGGTGNTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTTGAGTCTCTTGTGTACTATGTGATGCANTAATCAATGAATGACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287327" ref_strand="+" ref_description="SGN-E287327 [cLES-15-H15]">
      <seq>aaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctcttgtgtactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1526" stop="404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1226" g_stop="695" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E287327" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1226" e_stop="695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCA</genome_strand>
        <mrna_strand>AAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357825" ref_strand="+" ref_description="SGN-E357825 [cTOS-24-E8]">
      <seq>cccaatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattaggcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaattgttcgatgctgttgttgttgttaaagcttgggagaagaagaaggaattgcttacgttttctccttctccttcaccggctacaaagtgaattttcgatggttgatagtggctaaaagttaaaacttctagtagtgctaatgttgtttaatctaattttgaagtactttaatttgtagcctttttattttttttaacctattttgagttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1551" stop="412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1251" g_stop="712" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E357825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1251" e_stop="712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTT</genome_strand>
        <mrna_strand>CCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243257" ref_strand="+" ref_description="SGN-E243257 [cLEE-2-J18]">
      <seq>caatctccaatggcaaaatccacaaaaattctctcatcaatcctcattctcttcttcattttcagtctattttcttcatcaaacgcattacgcggaaagctcggcggaagaacacaaatcaaaaacgtgaaaacaaatcaggaaattcaagatctaggtaagtactgtgtcgaagaacacaacagagatttgcggcatatcaatggtgctttgagttctttattgagtttttctcaagttgttgaagcagaaaaacaagttgtttctggtgttaaatattatctaaaaatctcagctattgttaaatcatctagctcaccaaaatcgttcgatgctgttgttgttggtaaagcttgtgagaagaagaaggaattgcttacgtattctccttctccttcaccggctacaaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="1549" stop="537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1249" g_stop="837" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E243257" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1249" e_stop="837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTG</genome_strand>
        <mrna_strand>CAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTACGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATCGTTCGATGCTGTTGTTGTTGGTAAAGCTTGTGAGAAGAAGAAGGAATTGCTTACGTATTCTCCTTCTCCTTCACCGGCTACAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538788" ref_strand="+" ref_description="SGN-E538788 [TUS-58-D11](-)">
      <seq>tcagaaattcaagtatgcaattgcctcctctagatgttttgtgnagcctaccctcagggtaataaatttaatcctgatagtttgagttcttcaaaaatattattatatctgtgtcgtttcatgtaaatatcgaagcagaataggtatttattaaaaaaattgtaacatactaaatgaaagtttaatttgtttcttttaggtccccacattctttgaggatgatctcaatagtgttgttcaaatgggatttggacaaaatcagaaccaaagttttccgggtgtagcaggtaacttgtcttattgtacgatctattctttaaatggtttattagtataaatatatatttttatactgtcaatatacaaaagattagaaaattgcacctatcgatttttatacaaaaatagttttaacatttttttttctttgttgaaaaatgcaggcaatgtacctaattctcaaatgaaagttgaactatgacccaaaaaagctcagtaaaaattgatgaatttatttgaggccctaaggctttgtacataaagagagggaaaattcgcgattaagacctattcaaagcaaatatcgcgattcaagaagaaagaagaaattaaagagatatttttttctcttaaaaaattcttgatttatttagtgattaatttggcttattgttattattactgtttcaattatttttctctcctttcatgtaattcttactacaaaaattggagaggcaattagcaaactctaccaagatttgcactttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="19040" stop="17662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18740" g_stop="17958" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="782" r_length="782" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E538788" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18740" e_stop="17958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAATTCAAGTATGCAATTGCCTCCTCTAGATGGTTTTGTTGAGCCTACCCCTCAGGTAATAAATTTAATCCTGATAGTTTGAGTTCTTCAAAAATATTATTATATCTGTGTCGTTTCATGTAAATATCGAAGCAGAATAGGTATTTATTAAAAAAATTGTAACATACTAAATGAAAGTTTAATTTGTTTCTTTTAGGTCCCCACATTCTTTGAGGATGATCTCAATAGTGTTGTTCAAATGGGATTTGGACAAAATCAGAACCAAAGTTTTCCGGGTGTAGCAGGTAACTTGTCTTATTGTACGATCTATTCTTTAAATGGTTTATTAGTATAAATATATATTTTTATACTGTCAATATACAAAAGATTAGAAAATTGCACCTATCGATTTTTATACAAAAATAGTTTTAACATTTTTTTTTCTTTGTTGAAAAATGCAGGCAATGTACCTAATTCTCAAATGAAAGTTGAACTATGACCCAAAAAAGCTCAGTAAAAATTGATGAATTTATTTGAGGCCCTAAGGCTTTGTACATAAAGAGAGGGAAAATTCGCGATTAAGACCTATTCAAAGCAAATATCGCGATTCAAGAAGAAAGAAGAAATTAAAGAGATATTTTTTTCTCTTAAAAAATTCTTGATTTATTTAGTGATTAATTTGGCTTATTGTTATTATTACTGTTTCAATTATTTTTCTCTCCTTTCATGTAATTCTTACTACAAAAATTGGAGAGGCAATTAGCAAACTCTACCAAGATTTGCACTTTGTAAAATATTTT</genome_strand>
        <mrna_strand>TCAGAAATTCAAGTATGCAATTGCCTCCTCTAGAT-GTTTTGTGNAGCCTACCCTCAGGGTAATAAATTTAATCCTGATAGTTTGAGTTCTTCAAAAATATTATTATATCTGTGTCGTTTCATGTAAATATCGAAGCAGAATAGGTATTTATTAAAAAAATTGTAACATACTAAATGAAAGTTTAATTTGTTTCTTTTAGGTCCCCACATTCTTTGAGGATGATCTCAATAGTGTTGTTCAAATGGGATTTGGACAAAATCAGAACCAAAGTTTTCCGGGTGTAGCAGGTAACTTGTCTTATTGTACGATCTATTCTTTAAATGGTTTATTAGTATAAATATATATTTTTATACTGTCAATATACAAAAGATTAGAAAATTGCACCTATCGATTTTTATACAAAAATAGTTTTAACATTTTTTTTTCTTTGTTGAAAAATGCAGGCAATGTACCTAATTCTCAAATGAAAGTTGAACTATGACCCAAAAAAGCTCAGTAAAAATTGATGAATTTATTTGAGGCCCTAAGGCTTTGTACATAAAGAGAGGGAAAATTCGCGATTAAGACCTATTCAAAGCAAATATCGCGATTCAAGAAGAAAGAAGAAATTAAAGAGATATTTTTTTCTCTTAAAAAATTCTTGATTTATTTAGTGATTAATTTGGCTTATTGTTATTATTACTGTTTCAATTATTTTTCTCTCCTTTCATGTAATTCTTACTACAAAAATTGGAGAGGCAATTAGCAAACTCTACCAAGATTTGCACTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538795" ref_strand="+" ref_description="SGN-E538795 [TUS-58-D15](-)">
      <seq>ttgaggatgatctcaatagtgttgttcaaatgggatttggacaaaatcagaaccaaagttttccgggtgtagcaggtaacttgtcttattgtacgatatattctttaaatggtttattagtataaatatatatttttatactgtcaatatacaaaagattagaaaattgcacctatcgatttttatacaaaaatagttttaacatttttttttctttgttgaaaaatgcaggcaatgtacctaattctcaaatgaaagttgaactatgacccaaaaaagctcagtaaaaattgatgaatttatttgaggccctaaggctttgtacataaagagagggaaaattcgcgattaagacctattcaaagcaaatatcgcgattcaagaagaaagaagaaattaaagagatatttttttctcttaaaaaattcttgatttatttagtgattaatttggcttattgttattattactgtttcaattatttttctctcctttcatgtaattcttactacaaaaattggagaggcaattagcaaactctaccaagatttgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="18827" stop="17673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18527" g_stop="17973" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E538795" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18527" e_stop="17973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGATGATCTCAATAGTGTTGTTCAAATGGGATTTGGACAAAATCAGAACCAAAGTTTTCCGGGTGTAGCAGGTAACTTGTCTTATTGTACGATCTATTCTTTAAATGGTTTATTAGTATAAATATATATTTTTATACTGTCAATATACAAAAGATTAGAAAATTGCACCTATCGATTTTTATACAAAAATAGTTTTAACATTTTTTTTTCTTTGTTGAAAAATGCAGGCAATGTACCTAATTCTCAAATGAAAGTTGAACTATGACCCAAAAAAGCTCAGTAAAAATTGATGAATTTATTTGAGGCCCTAAGGCTTTGTACATAAAGAGAGGGAAAATTCGCGATTAAGACCTATTCAAAGCAAATATCGCGATTCAAGAAGAAAGAAGAAATTAAAGAGATATTTTTTTCTCTTAAAAAATTCTTGATTTATTTAGTGATTAATTTGGCTTATTGTTATTATTACTGTTTCAATTATTTTTCTCTCCTTTCATGTAATTCTTACTACAAAAATTGGAGAGGCAATTAGCAAACTCTACCAAGATTTGCAC</genome_strand>
        <mrna_strand>TTGAGGATGATCTCAATAGTGTTGTTCAAATGGGATTTGGACAAAATCAGAACCAAAGTTTTCCGGGTGTAGCAGGTAACTTGTCTTATTGTACGATATATTCTTTAAATGGTTTATTAGTATAAATATATATTTTTATACTGTCAATATACAAAAGATTAGAAAATTGCACCTATCGATTTTTATACAAAAATAGTTTTAACATTTTTTTTTCTTTGTTGAAAAATGCAGGCAATGTACCTAATTCTCAAATGAAAGTTGAACTATGACCCAAAAAAGCTCAGTAAAAATTGATGAATTTATTTGAGGCCCTAAGGCTTTGTACATAAAGAGAGGGAAAATTCGCGATTAAGACCTATTCAAAGCAAATATCGCGATTCAAGAAGAAAGAAGAAATTAAAGAGATATTTTTTTCTCTTAAAAAATTCTTGATTTATTTAGTGATTAATTTGGCTTATTGTTATTATTACTGTTTCAATTATTTTTCTCTCCTTTCATGTAATTCTTACTACAAAAATTGGAGAGGCAATTAGCAAACTCTACCAAGATTTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207247" ref_strand="+" ref_description="SGN-E207247 [cLEC-30-J6]">
      <seq>tgagttcctttcaatgaaattagctactgtgaatccaagaatggactttaatatggaagcacttctttccaaggatatgtttcaatctaggggatcattgggacataacatgtatcaatcagaaacatcaacccaagcatttccttatggatttcaatctcaaccaaaccaaaattatcataaaggaacagagtttcctttccaaattaactcattgaatcctaatttgatcagaaattcaagtatgcaattgcctcctctagatggttttgttgagcctacccctcaggtccccacattctttgaggatgatctcaatagtgttgttcaaatgggatttggacaaaatcagaaccaaagttttccgggtgtagcaggcaatgtacctaattctcaaatgaaagttgaactatgacccaaaaaagctcagtaaaaattgatgaatttatttgaggccctaaggctttgtacataaaagagagggaaaaaaaaaattttttttcgcgattaagacctattcaaagcaaatatcgcgattcaagaagaaagaagaaattaaagagatatttttttctcttaaaaaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="19376" stop="17798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19185" g_stop="19182" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19181" i_stop="19072" i_length="110">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19071" g_stop="19000" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="76" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18999" i_stop="18895" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18894" g_stop="18682" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="289" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18681" i_stop="18541" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18540" g_stop="18453" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="377" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18452" i_stop="18297" i_length="156">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18296" g_stop="18098" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="589" r_length="212" r_score="0.869"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E207247" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19185" e_stop="19182"/>
          <exon e_start="19071" e_stop="19000"/>
          <exon e_start="18894" e_stop="18682"/>
          <exon e_start="18540" e_stop="18453"/>
          <exon e_start="18296" e_stop="18098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTAAATTATGATCGAATTTTCTGTAACATACTTAAATTTTACGGGAGTCCTGTTAAGTCCTTTAGACTATACTATTAAATTCTTATACTTTTTTAATGTCATTTTTGTAGTTCCTTTCAATGAAATTAGCTACTGTGAATCCAAGAATGGACTTTAATATGGAAGCACTTCTTTCCAAGGATGTAAGTCAATTTAACTCGACTACTCAGACTTTTCAGAAATATTATTTAACTATTATTAGACGATTCGACACGTACCTGACAATATTTTTGCGTATTTTTTTCCAGATGTTTCAATCTAGGGGATCATTGGGACATAACATGTATCAATCAGAAACATCAACCCAAGCATTTCCTTATGGATTTCAATCTCAACCAAACCAAAATTATCATAAAGGAACAGAGTTTCCTTTCCAAATTAACTCATTGAATCCTAATTTGATCAGAAATTCAAGTATGCAATTGCCTCCTCTAGATGGTTTTGTTGAGCCTACCCCTCAGGTAATAAATTTAATCCTGATAGTTTGAGTTCTTCAAAAATATTATTATATCTGTGTCGTTTCATGTAAATATCGAAGCAGAATAGGTATTTATTAAAAAAATTGTAACATACTAAATGAAAGTTTAATTTGTTTCTTTTAGGTCCCCACATTCTTTGAGGATGATCTCAATAGTGTTGTTCAAATGGGATTTGGACAAAATCAGAACCAAAGTTTTCCGGGTGTAGCAGGTAACTTGTCTTATTGTACGATCTATTCTTTAAATGGTTTATTAGTATAAATATATATTTTTATACTGTCAATATACAAAAGATTAGAAAATTGCACCTATCGATTTTTATACAAAAATAGTTTTAACATTTTTTTTTCTTTGTTGAAAAATGCAGGCAATGTACCTAATTCTCAAATGAAAGTTGAACTATGACCCAAAAAAGCTCAGTAAAAATTGATGAATTTATTTGAGGCCCTAAGGCTTTGTACAT-AAAGAGAGGG------AAAA------TTCGCGATTAAGACCTATTCAAAGCAAATATCGCGATTCAAGAAGAAAGAAGAAATTAAAGAGATATTTTTTTCTCTTAAAAAATTCTT</genome_strand>
        <mrna_strand>TGAG..............................................................................................................TTCCTTTCAATGAAATTAGCTACTGTGAATCCAAGAATGGACTTTAATATGGAAGCACTTCTTTCCAAGGAT.........................................................................................................ATGTTTCAATCTAGGGGATCATTGGGACATAACATGTATCAATCAGAAACATCAACCCAAGCATTTCCTTATGGATTTCAATCTCAACCAAACCAAAATTATCATAAAGGAACAGAGTTTCCTTTCCAAATTAACTCATTGAATCCTAATTTGATCAGAAATTCAAGTATGCAATTGCCTCCTCTAGATGGTTTTGTTGAGCCTACCCCTCAG.............................................................................................................................................GTCCCCACATTCTTTGAGGATGATCTCAATAGTGTTGTTCAAATGGGATTTGGACAAAATCAGAACCAAAGTTTTCCGGGTGTAGCAG............................................................................................................................................................GCAATGTACCTAATTCTCAAATGAAAGTTGAACTATGACCCAAAAAAGCTCAGTAAAAATTGATGAATTTATTTGAGGCCCTAAGGCTTTGTACATAAAAGAGAGGGAAAAAAAAAATTTTTTTTCGCGATTAAGACCTATTCAAAGCAAATATCGCGATTCAAGAAGAAAGAAGAAATTAAAGAGATATTTTTTTCTCTTAAAAAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209856" ref_strand="+" ref_description="SGN-E209856 [cLEC-52-O21]">
      <seq>aaggggacaggccacagatgcacatagtctagctgaaagagtgagaagggagaaaattagtgaaagaatgaagcttttacaagatcttgtaccaggctgcaataaggtgactggaaaagctgtaatgcttgatgagattattaactatgtacaatcacttcaacgtcaagttgagttcctttcaatgaaattagctactgtgaatccaagaatggactttaatatggaagcacttctttccaaggatatgtttcaatctaggggatcattgggacataacatgtatcaatcagaaacatcaacccaagcatttccttatggatttcaatctcaaccaaaccaaaattatcataaaggaacagagtttcctttccaaattaactcattgaatcctaatttgatcagaaattcaagtatgcaattgcctcctctagatggttttgttgagcctacccctcaggtccccacattctttgaggatgatctcaatagtgttgttcaaatgggatttggacaaaatcagaaccaaagttttccgggtgtagcaggcaatgtacctaattctcaaatgaaagttgaactatgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="19866" stop="17957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19566" g_stop="19527" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19526" i_stop="19421" i_length="106">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19420" g_stop="19355" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="106" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19354" i_stop="19251" i_length="104">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19250" g_stop="19182" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="175" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19181" i_stop="19072" i_length="110">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19071" g_stop="19000" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="247" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18999" i_stop="18895" i_length="105">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18894" g_stop="18682" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="460" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18681" i_stop="18541" i_length="141">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18540" g_stop="18453" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="548" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18452" i_stop="18297" i_length="156">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18296" g_stop="18257" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="588" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E209856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19566" e_stop="19527"/>
          <exon e_start="19420" e_stop="19355"/>
          <exon e_start="19250" e_stop="19182"/>
          <exon e_start="19071" e_stop="19000"/>
          <exon e_start="18894" e_stop="18682"/>
          <exon e_start="18540" e_stop="18453"/>
          <exon e_start="18296" e_stop="18257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGACAGGCCACAGATGCACATAGTCTAGCTGAAAGAGTATGTAACAACTTCGATTTTTGCTCGAATTCTTCAGAAATATCGTAATTTTTTGAGGATCTGATATATCGTAATTCCTAATATATCGTTTATTCAAACTTGACAGGTGAGAAGGGAGAAAATTAGTGAAAGAATGAAGCTTTTACAAGATCTTGTACCAGGCTGCAATAAGGTGATTTTTTAATTTTTGAAAAAAATAAATATATTATTTTGTTTGATTTACTTAGCAGATTCATAATTTGAATATGTGAAATTGATTATTATTTTTTACTATAGGTGACTGGAAAAGCTGTAATGCTTGATGAGATTATTAACTATGTACAATCACTTCAACGTCAAGTTGAGGTAAATTATGATCGAATTTTCTGTAACATACTTAAATTTTACGGGAGTCCTGTTAAGTCCTTTAGACTATACTATTAAATTCTTATACTTTTTTAATGTCATTTTTGTAGTTCCTTTCAATGAAATTAGCTACTGTGAATCCAAGAATGGACTTTAATATGGAAGCACTTCTTTCCAAGGATGTAAGTCAATTTAACTCGACTACTCAGACTTTTCAGAAATATTATTTAACTATTATTAGACGATTCGACACGTACCTGACAATATTTTTGCGTATTTTTTTCCAGATGTTTCAATCTAGGGGATCATTGGGACATAACATGTATCAATCAGAAACATCAACCCAAGCATTTCCTTATGGATTTCAATCTCAACCAAACCAAAATTATCATAAAGGAACAGAGTTTCCTTTCCAAATTAACTCATTGAATCCTAATTTGATCAGAAATTCAAGTATGCAATTGCCTCCTCTAGATGGTTTTGTTGAGCCTACCCCTCAGGTAATAAATTTAATCCTGATAGTTTGAGTTCTTCAAAAATATTATTATATCTGTGTCGTTTCATGTAAATATCGAAGCAGAATAGGTATTTATTAAAAAAATTGTAACATACTAAATGAAAGTTTAATTTGTTTCTTTTAGGTCCCCACATTCTTTGAGGATGATCTCAATAGTGTTGTTCAAATGGGATTTGGACAAAATCAGAACCAAAGTTTTCCGGGTGTAGCAGGTAACTTGTCTTATTGTACGATCTATTCTTTAAATGGTTTATTAGTATAAATATATATTTTTATACTGTCAATATACAAAAGATTAGAAAATTGCACCTATCGATTTTTATACAAAAATAGTTTTAACATTTTTTTTTCTTTGTTGAAAAATGCAGGCAATGTACCTAATTCTCAAATGAAAGTTGAACTATGACC</genome_strand>
        <mrna_strand>AAGGGGACAGGCCACAGATGCACATAGTCTAGCTGAAAGA..........................................................................................................GTGAGAAGGGAGAAAATTAGTGAAAGAATGAAGCTTTTACAAGATCTTGTACCAGGCTGCAATAAG........................................................................................................GTGACTGGAAAAGCTGTAATGCTTGATGAGATTATTAACTATGTACAATCACTTCAACGTCAAGTTGAG..............................................................................................................TTCCTTTCAATGAAATTAGCTACTGTGAATCCAAGAATGGACTTTAATATGGAAGCACTTCTTTCCAAGGAT.........................................................................................................ATGTTTCAATCTAGGGGATCATTGGGACATAACATGTATCAATCAGAAACATCAACCCAAGCATTTCCTTATGGATTTCAATCTCAACCAAACCAAAATTATCATAAAGGAACAGAGTTTCCTTTCCAAATTAACTCATTGAATCCTAATTTGATCAGAAATTCAAGTATGCAATTGCCTCCTCTAGATGGTTTTGTTGAGCCTACCCCTCAG.............................................................................................................................................GTCCCCACATTCTTTGAGGATGATCTCAATAGTGTTGTTCAAATGGGATTTGGACAAAATCAGAACCAAAGTTTTCCGGGTGTAGCAG............................................................................................................................................................GCAATGTACCTAATTCTCAAATGAAAGTTGAACTATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268987" ref_strand="+" ref_description="SGN-E268987 [cLEI-16-C22]">
      <seq>gactatattcatgtgagagctagaaggggacaggccacgagatgcacataggctatctgaaagagtgagaagggagaaaattagtgaaagaatgaagcttttacaagatcttgtaccaagctgcaataaggtgactggaaaagctgtaatgcttgatgagattattaactatgtacaatcacttcaacgtcaagttgagttcctttcaatgaaattagctactgtgaatccaagaatggactttaatatggaagcacttgtttgcaaagatatgtttcaatctacgggatcattgggacataacatgtatcaatcaaaaacatcaacccaagcatgtccttatggatttcaatctcaaccaaaccaaaattatcataaaggaacagagttttctttccaaattaactcattgaatcctaatttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="19889" stop="18438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19589" g_stop="19527" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19526" i_stop="19421" i_length="106">
            <donor d_prob="0.952" d_score="0.92"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19420" g_stop="19355" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="130" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19354" i_stop="19251" i_length="104">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19250" g_stop="19182" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="199" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19181" i_stop="19072" i_length="110">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19071" g_stop="19000" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="271" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18999" i_stop="18895" i_length="105">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18894" g_stop="18738" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="428" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E268987" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19589" e_stop="19527"/>
          <exon e_start="19420" e_stop="19355"/>
          <exon e_start="19250" e_stop="19182"/>
          <exon e_start="19071" e_stop="19000"/>
          <exon e_start="18894" e_stop="18738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTATATTCATGTGAGAGCTAGAAGGGGACAGGCCAC-AGATGCACATAGTCTAGCTGAAAGAGTATGTAACAACTTCGATTTTTGCTCGAATTCTTCAGAAATATCGTAATTTTTTGAGGATCTGATATATCGTAATTCCTAATATATCGTTTATTCAAACTTGACAGGTGAGAAGGGAGAAAATTAGTGAAAGAATGAAGCTTTTACAAGATCTTGTACCAGGCTGCAATAAGGTGATTTTTTAATTTTTGAAAAAAATAAATATATTATTTTGTTTGATTTACTTAGCAGATTCATAATTTGAATATGTGAAATTGATTATTATTTTTTACTATAGGTGACTGGAAAAGCTGTAATGCTTGATGAGATTATTAACTATGTACAATCACTTCAACGTCAAGTTGAGGTAAATTATGATCGAATTTTCTGTAACATACTTAAATTTTACGGGAGTCCTGTTAAGTCCTTTAGACTATACTATTAAATTCTTATACTTTTTTAATGTCATTTTTGTAGTTCCTTTCAATGAAATTAGCTACTGTGAATCCAAGAATGGACTTTAATATGGAAGCACTTCTTTCCAAGGATGTAAGTCAATTTAACTCGACTACTCAGACTTTTCAGAAATATTATTTAACTATTATTAGACGATTCGACACGTACCTGACAATATTTTTGCGTATTTTTTTCCAGATGTTTCAATCTAGGGGATCATTGGGACATAACATGTATCAATCAGAAACATCAACCCAAGCATTTCCTTATGGATTTCAATCTCAACCAAACCAAAATTATCATAAAGGAACAGAGTTTCCTTTCCAAATTAACTCATTGAATCCTAATTTGATCA</genome_strand>
        <mrna_strand>GACTATATTCATGTGAGAGCTAGAAGGGGACAGGCCACGAGATGCACATAGGCTATCTGAAAGA..........................................................................................................GTGAGAAGGGAGAAAATTAGTGAAAGAATGAAGCTTTTACAAGATCTTGTACCAAGCTGCAATAAG........................................................................................................GTGACTGGAAAAGCTGTAATGCTTGATGAGATTATTAACTATGTACAATCACTTCAACGTCAAGTTGAG..............................................................................................................TTCCTTTCAATGAAATTAGCTACTGTGAATCCAAGAATGGACTTTAATATGGAAGCACTTGTTTGCAAAGAT.........................................................................................................ATGTTTCAATCTACGGGATCATTGGGACATAACATGTATCAATCAAAAACATCAACCCAAGCATGTCCTTATGGATTTCAATCTCAACCAAACCAAAATTATCATAAAGGAACAGAGTTTTCTTTCCAAATTAACTCATTGAATCCTAATTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548114" ref_strand="+" ref_description="SGN-E548114 [TUS-58-D11]">
      <seq>acaaagtcattttcttctaatattttgttactactccaaaagatattgtgtccattttttttccaagaaaattcctacccttttttcttcttgaatttttagccttttggggttctttttttcaaaatggaaaagggaaatttgttcataaatgatgataacactacctatgaacatcttcaaaattgtttctttaatcccaatttagataacaacaattctgatccatttgaatcagcattgagttcaatggtatcttctcctatttcaattcctaataataatagtggtagtgataattttgtattaagggaattaattggtagactaggaagtatttgtaacaatactaataataatagtagtagtactaataattcttgttatagtacccctttaaattctccaccaaaattgaatctttctatgagaggtaatttaccaccaacacaatttactactgatcctggatttgcagaaagagctgctagattttcttgttttgctacaaatttagaaagtaatcattccatcaagattcaagatgtcaatttggttcaaagaaattctgaatttggagattcaagagaaaattcatcactttctgagcaaatgattggtcaaaatgatacaaattncagaaaaagaaatcaatttccaagggaaaatcatccaagattgtcaatgataaaaatgaatcaaatgccaaaagaaagcagtctgaggaaaatgaaaataaagtaacaaaaaagagggaaatgctggttttgaagaaataaagataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="20828" stop="19313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20528" g_stop="19842" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19841" i_stop="19716" i_length="126">
            <donor d_prob="0.792" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19715" g_stop="19613" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="787" r_length="101" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E548114" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20528" e_stop="19842"/>
          <exon e_start="19715" e_stop="19613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTCATTTTCTTCTAATATTTTGTTACTACTCCAAAAGATATTGTGTCCATTTTTTTTCCAAGAAAATTCCTACCCTTTTTTCTTCTTGAATTTTTAGCCTTTTGGGGTTCTTTTTTTCAAAATGGAAAAGGGAAATTTGTTCATAAATGATGATAACACTACCTATGAACATCTTCAAAATTGTTTCTTTAATCCCAATTTAGATAACAACAATTCTGATCCATTTGAATCAGCATTGAGTTCAATGGTATCTTCTCCTATTTCAATTCCTAATAATAATAGTGGTAGTGATAATTTTGTATTAAGGGAATTAATTGGTAGACTAGGAAGTATTTGTAACAATACTAATAATAATAGTAGTAGTACTAATAATTCTTGTTATAGTACCCCTTTAAATTCTCCACCAAAATTGAATCTTTCTATGAGAGGTAATTTACCACCAACACAATTTACTACTGATCCTGGATTTGCAGAAAGAGCTGCTAGATTTTCTTGTTTTGCTACAAATTTAGAAAGTAATCATTCCATCAAGATTCAAGATGTCAATTTGGTTCAAAGAAATTCTGAATTTGGAGATTCAAGAGAAAATTCATCACTTTCTGAGCAAATGATTGGTCAAAATGATACAAATTCAAGAAAAAGAAAATCAATTTCCAAGGGAAAATCATCCAAGATTGTCAATGTAAGTCACGAGTTTGATTTCTCAGCTAGTCACTCAAAACAATGTGTTAGTATGTCAGAAAGTCGCCGCGATTTTCTGAGATAATAACTATTAGTAGTACTAATATTATTGTACTTAATTTTGCAGGATAAAAATGAATCAAATGCCAAAAGAAGCAAGTCTGAGGAAAATGAAAATAAAGTAACAAAAAAAGAGGAAAATGCTGTTTTAGAAGAAAATAAAGATAACC</genome_strand>
        <mrna_strand>ACAAAGTCATTTTCTTCTAATATTTTGTTACTACTCCAAAAGATATTGTGTCCATTTTTTTTCCAAGAAAATTCCTACCCTTTTTTCTTCTTGAATTTTTAGCCTTTTGGGGTTCTTTTTTTCAAAATGGAAAAGGGAAATTTGTTCATAAATGATGATAACACTACCTATGAACATCTTCAAAATTGTTTCTTTAATCCCAATTTAGATAACAACAATTCTGATCCATTTGAATCAGCATTGAGTTCAATGGTATCTTCTCCTATTTCAATTCCTAATAATAATAGTGGTAGTGATAATTTTGTATTAAGGGAATTAATTGGTAGACTAGGAAGTATTTGTAACAATACTAATAATAATAGTAGTAGTACTAATAATTCTTGTTATAGTACCCCTTTAAATTCTCCACCAAAATTGAATCTTTCTATGAGAGGTAATTTACCACCAACACAATTTACTACTGATCCTGGATTTGCAGAAAGAGCTGCTAGATTTTCTTGTTTTGCTACAAATTTAGAAAGTAATCATTCCATCAAGATTCAAGATGTCAATTTGGTTCAAAGAAATTCTGAATTTGGAGATTCAAGAGAAAATTCATCACTTTCTGAGCAAATGATTGGTCAAAATGATACAAATTNCAGAAAAAG-AAATCAATTTCCAAGGGAAAATCATCCAAGATTGTCAAT..............................................................................................................................GATAAAAATGAATCAAATGCCAAAAGAAAGCAGTCTGAGGAAAATGAAAATAAAGTAAC-AAAAAAGAGGGAAATGCTGGTTTTGAAG-AAATAAAGATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268747" ref_strand="+" ref_description="SGN-E268747 [cLEM-16-B17]">
      <seq>ccaacacaatttactactgatcctggatttgcagaaagagctgctagatttcttgttttgctacaaatttagaaagtaatcattccatcaagattcaagatgtcaatttggttcaaagaaattctgaatttggagattcaagagaaaattcatcactttctgagcaaatgattggtcaaaatgatacaaattcaagaaaaagaaaatcaatttccaaaggaaaatcatccaagattgtcaatgataaaaatgaatcaaatgccaaaagaagcaagtctgaggaaaatgaaaataaagtaacaaaaaaagaggaaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="20384" stop="19338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20084" g_stop="19842" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19841" i_stop="19716" i_length="126">
            <donor d_prob="0.792" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19715" g_stop="19638" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="320" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E268747" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20084" e_stop="19842"/>
          <exon e_start="19715" e_stop="19638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACACAATTTACTACTGATCCTGGATTTGCAGAAAGAGCTGCTAGATTTTCTTGTTTTGCTACAAATTTAGAAAGTAATCATTCCATCAAGATTCAAGATGTCAATTTGGTTCAAAGAAATTCTGAATTTGGAGATTCAAGAGAAAATTCATCACTTTCTGAGCAAATGATTGGTCAAAATGATACAAATTCAAGAAAAAGAAAATCAATTTCCAAGGGAAAATCATCCAAGATTGTCAATGTAAGTCACGAGTTTGATTTCTCAGCTAGTCACTCAAAACAATGTGTTAGTATGTCAGAAAGTCGCCGCGATTTTCTGAGATAATAACTATTAGTAGTACTAATATTATTGTACTTAATTTTGCAGGATAAAAATGAATCAAATGCCAAAAGAAGCAAGTCTGAGGAAAATGAAAATAAAGTAACAAAAAAAGAGGAAAATGCT</genome_strand>
        <mrna_strand>CCAACACAATTTACTACTGATCCTGGATTTGCAGAAAGAGCTGCTAGA-TTTCTTGTTTTGCTACAAATTTAGAAAGTAATCATTCCATCAAGATTCAAGATGTCAATTTGGTTCAAAGAAATTCTGAATTTGGAGATTCAAGAGAAAATTCATCACTTTCTGAGCAAATGATTGGTCAAAATGATACAAATTCAAGAAAAAGAAAATCAATTTCCAAAGGAAAATCATCCAAGATTGTCAAT..............................................................................................................................GATAAAAATGAATCAAATGCCAAAAGAAGCAAGTCTGAGGAAAATGAAAATAAAGTAACAAAAAAAGAGGAAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538797" ref_strand="+" ref_description="SGN-E538797 [TUS-58-D15]">
      <seq>acaaagtcattttcttctaatattttgttactactccaaaagatattgtgtccattttttttccaagaaaattcctacccttttttcttcttgaatttttagccttttggggttctttttttcaaaatggaaaagggaaatttgttcataaatgatgataacactacctatgaacatcttcaaaattgtttctttaatcccaatttagataacaacaattctgatccatttgaatcagcattgagttcaatggtatcttctcctatttcaattcctaataataatagtggtagtgataattttgtattaagggaattaattggtagactaggaagtatttgtaacaatactaataataatagtagtagtactaataattcttgttatagtacccctttaaattctccaccaaaattgaatctttctatgagaggtaatttaccaccaacacaatttactactgatcctggatttgcagaaagagctgctagattttcttgttttgctacaaatttagaaagtaatcattccatcaagattcaagatgtcaatttggttcaaagaaattctgaatttggagattcaagagaaaattcatcactttctgagcaaatgattggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="20828" stop="19607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20528" g_stop="19907" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E538797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20528" e_stop="19907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGTCATTTTCTTCTAATATTTTGTTACTACTCCAAAAGATATTGTGTCCATTTTTTTTCCAAGAAAATTCCTACCCTTTTTTCTTCTTGAATTTTTAGCCTTTTGGGGTTCTTTTTTTCAAAATGGAAAAGGGAAATTTGTTCATAAATGATGATAACACTACCTATGAACATCTTCAAAATTGTTTCTTTAATCCCAATTTAGATAACAACAATTCTGATCCATTTGAATCAGCATTGAGTTCAATGGTATCTTCTCCTATTTCAATTCCTAATAATAATAGTGGTAGTGATAATTTTGTATTAAGGGAATTAATTGGTAGACTAGGAAGTATTTGTAACAATACTAATAATAATAGTAGTAGTACTAATAATTCTTGTTATAGTACCCCTTTAAATTCTCCACCAAAATTGAATCTTTCTATGAGAGGTAATTTACCACCAACACAATTTACTACTGATCCTGGATTTGCAGAAAGAGCTGCTAGATTTTCTTGTTTTGCTACAAATTTAGAAAGTAATCATTCCATCAAGATTCAAGATGTCAATTTGGTTCAAAGAAATTCTGAATTTGGAGATTCAAGAGAAAATTCATCACTTTCTGAGCAAATGATTGGTC</genome_strand>
        <mrna_strand>ACAAAGTCATTTTCTTCTAATATTTTGTTACTACTCCAAAAGATATTGTGTCCATTTTTTTTCCAAGAAAATTCCTACCCTTTTTTCTTCTTGAATTTTTAGCCTTTTGGGGTTCTTTTTTTCAAAATGGAAAAGGGAAATTTGTTCATAAATGATGATAACACTACCTATGAACATCTTCAAAATTGTTTCTTTAATCCCAATTTAGATAACAACAATTCTGATCCATTTGAATCAGCATTGAGTTCAATGGTATCTTCTCCTATTTCAATTCCTAATAATAATAGTGGTAGTGATAATTTTGTATTAAGGGAATTAATTGGTAGACTAGGAAGTATTTGTAACAATACTAATAATAATAGTAGTAGTACTAATAATTCTTGTTATAGTACCCCTTTAAATTCTCCACCAAAATTGAATCTTTCTATGAGAGGTAATTTACCACCAACACAATTTACTACTGATCCTGGATTTGCAGAAAGAGCTGCTAGATTTTCTTGTTTTGCTACAAATTTAGAAAGTAATCATTCCATCAAGATTCAAGATGTCAATTTGGTTCAAAGAAATTCTGAATTTGGAGATTCAAGAGAAAATTCATCACTTTCTGAGCAAATGATTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274955" ref_strand="+" ref_description="SGN-E274955 [cLEN-16-N22]">
      <seq>caaagtcattttcttctaatattttgttactactccaaaagatattgtgtccattttttttccaagaaaattcctacccttttttcttcttgaatttttagccttttggggttctttttttcaaaatggaaaagggaaatttgttcataaatgatgataacactacctatgaacatcttcaaaattgtttctttaatcccaatttagataacaacaattctgatccatttgaatcagcattgagttcaatggtatcttctcctatttcaattcctaataataatagtggtagtgataattttgtattaagggaattaattggtagactaggaagtatttgtaacaatactaataataatagtagtagtactaataattcttgttatagtacccctttaaattctccaccaaaattgaatctttctatgagaggtaatttaccaccaacacaatttactactgatcctggatttgcagaaagagctgctagattttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="20827" stop="19730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20527" g_stop="20030" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E274955" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20527" e_stop="20030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTCATTTTCTTCTAATATTTTGTTACTACTCCAAAAGATATTGTGTCCATTTTTTTTCCAAGAAAATTCCTACCCTTTTTTCTTCTTGAATTTTTAGCCTTTTGGGGTTCTTTTTTTCAAAATGGAAAAGGGAAATTTGTTCATAAATGATGATAACACTACCTATGAACATCTTCAAAATTGTTTCTTTAATCCCAATTTAGATAACAACAATTCTGATCCATTTGAATCAGCATTGAGTTCAATGGTATCTTCTCCTATTTCAATTCCTAATAATAATAGTGGTAGTGATAATTTTGTATTAAGGGAATTAATTGGTAGACTAGGAAGTATTTGTAACAATACTAATAATAATAGTAGTAGTACTAATAATTCTTGTTATAGTACCCCTTTAAATTCTCCACCAAAATTGAATCTTTCTATGAGAGGTAATTTACCACCAACACAATTTACTACTGATCCTGGATTTGCAGAAAGAGCTGCTAGATTTTCTT</genome_strand>
        <mrna_strand>CAAAGTCATTTTCTTCTAATATTTTGTTACTACTCCAAAAGATATTGTGTCCATTTTTTTTCCAAGAAAATTCCTACCCTTTTTTCTTCTTGAATTTTTAGCCTTTTGGGGTTCTTTTTTTCAAAATGGAAAAGGGAAATTTGTTCATAAATGATGATAACACTACCTATGAACATCTTCAAAATTGTTTCTTTAATCCCAATTTAGATAACAACAATTCTGATCCATTTGAATCAGCATTGAGTTCAATGGTATCTTCTCCTATTTCAATTCCTAATAATAATAGTGGTAGTGATAATTTTGTATTAAGGGAATTAATTGGTAGACTAGGAAGTATTTGTAACAATACTAATAATAATAGTAGTAGTACTAATAATTCTTGTTATAGTACCCCTTTAAATTCTCCACCAAAATTGAATCTTTCTATGAGAGGTAATTTACCACCAACACAATTTACTACTGATCCTGGATTTGCAGAAAGAGCTGCTAGATTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304105" ref_strand="+" ref_description="SGN-E304105 [cLEX-6-P3]">
      <seq>caattctcctctctacatgttttctttcctttcaaacaacaaagtcattttcttctaatattttgttactactccaaaagatattgtgtccattttttttccaagaaaattcctacccttttttcttcttgaatttttagccttttggggttctttttttcaaaatggaaaagggaaatttgttcataaatgatgataacactacctatgaacatcttcaaaattgtttctttaatcccaatttagataacaacaattctgatccatttgaatcagcattgagttcaatggtatcttctcctatttcaattcctaataataatagtggtagtgataattttgtattaagggaattaattggtagactaggaagtatttgtgacaatactaataataatagtagtagtactaataattcttgttatagtacccctttaaattctccaccaaaattgaatctttctatgagaggtgatttaccaccaacacaatttactactgatcctggatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="20866" stop="19753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20566" g_stop="20053" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E304105" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20566" e_stop="20053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTCCTCTCTACATGTTTTCTTTCCTTTCAAACAACAAAGTCATTTTCTTCTAATATTTTGTTACTACTCCAAAAGATATTGTGTCCATTTTTTTTCCAAGAAAATTCCTACCCTTTTTTCTTCTTGAATTTTTAGCCTTTTGGGGTTCTTTTTTTCAAAATGGAAAAGGGAAATTTGTTCATAAATGATGATAACACTACCTATGAACATCTTCAAAATTGTTTCTTTAATCCCAATTTAGATAACAACAATTCTGATCCATTTGAATCAGCATTGAGTTCAATGGTATCTTCTCCTATTTCAATTCCTAATAATAATAGTGGTAGTGATAATTTTGTATTAAGGGAATTAATTGGTAGACTAGGAAGTATTTGTAACAATACTAATAATAATAGTAGTAGTACTAATAATTCTTGTTATAGTACCCCTTTAAATTCTCCACCAAAATTGAATCTTTCTATGAGAGGTAATTTACCACCAACACAATTTACTACTGATCCTGGATTTGC</genome_strand>
        <mrna_strand>CAATTCTCCTCTCTACATGTTTTCTTTCCTTTCAAACAACAAAGTCATTTTCTTCTAATATTTTGTTACTACTCCAAAAGATATTGTGTCCATTTTTTTTCCAAGAAAATTCCTACCCTTTTTTCTTCTTGAATTTTTAGCCTTTTGGGGTTCTTTTTTTCAAAATGGAAAAGGGAAATTTGTTCATAAATGATGATAACACTACCTATGAACATCTTCAAAATTGTTTCTTTAATCCCAATTTAGATAACAACAATTCTGATCCATTTGAATCAGCATTGAGTTCAATGGTATCTTCTCCTATTTCAATTCCTAATAATAATAGTGGTAGTGATAATTTTGTATTAAGGGAATTAATTGGTAGACTAGGAAGTATTTGTGACAATACTAATAATAATAGTAGTAGTACTAATAATTCTTGTTATAGTACCCCTTTAAATTCTCCACCAAAATTGAATCTTTCTATGAGAGGTGATTTACCACCAACACAATTTACTACTGATCCTGGATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307211" ref_strand="+" ref_description="SGN-E307211 [cLEY-15-P3]">
      <seq>tgatgcaggcgatcatcctccgataactccgatgcgttctgctagtgaggatagtttggggaatgatgcatggaagttgtaccagtacatctgccagcattttttgggaactctctctccagattgcaaatatagaaggataaaagttgaatttgaaagtggaggagagcaatttcagtgcgttgggcagcttgccacagtcaaaggattcacctctattatgccatggctggctattagtgagaagaatcttcctgagtttgctgtaggagagaaaatcgaggtttctaaagttgaactagatgaggtatcacataatctgttcaattgaacttctcatttgttcttcagctctggattaaattgctagtctttgcacttcagtagtatttattggtccattagttaattcttttgatttagggtacaactacacctcaatctcaagttagttggggttgtctatatgaatcctcattatccatcattttacctgacactttgttctttctttgctatgaaatgacttgaaacacccgcagcttactgagtatatgacccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="26029" stop="27517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26329" g_stop="26466" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26467" i_stop="26792" i_length="326">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26793" g_stop="27217" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="563" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E307211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26329" e_stop="26466"/>
          <exon e_start="26793" e_stop="27217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCAGGCGATCATCCTCCGATAACTCCGATGCGTTCTGCTAGTGAGGATAGTTTGGGGAATGATGCATGGAAGTTGTACCAGTACATCTGCCAGCATTTTTTGGGAACTCTCTCTCCAGATTGCAAATATAGAAGGTTGAGCTTTATTTCGTGATTAACGTCTTAGTAACTCCTCTTGCTTTGAGCTTATTTGCATATCTTTTAAACTAACCAACTACTTGGATAACTCTAATACTGATTTCTTCCTAGAACATGTCAAACAGCTCTTTTATGTATTCACATTATAGATCCAATTCAGATCCTGCTTTTAGTGTTTTTTCTTTCTTGTAACTAGCACAGTACGTGCCAAGTATAGAGGACTATAACAAGTTCAAATCTAGGCACTATTAATCTACTTGTCTTTGAAGAATCTTAGTTTCTGACTGAGAAGTTTAAGTCATGTAAATTGGGTATTTTCTCAGGATAAAAGTTGAATTTGAAAGTGGAGGAGAGCAATTTCAGTGCGTTGGGCAGCTTGCCACAGTCAAAGGATTCACCTCTATTATGCCATGGCTGGCTATTAGTGAGAAGAATCTTCCTGAGTTTGCTGTAGGAGAGAAAATCGAGGTTTCTAAAGTTGAACTAGATGAGGTATCACATAATCTGTTCAATTGAACTTCTCATTTGTTCTTCAGCTCTGGATTAAATTGCTAGTCTTTGCACTTCAGTAGTATTTATTGGTCCATTAGTTAATTCTTTTGATTTAGGGTACAACTACACCTCAATCTCAAGTTAGTTGGGGTTGTCTATATGAATCCTCATTATCCATCATTTTACCTGACACTTTGTTCTTTCTTTGCTATGAAATGACTTGAAACACCCGCAGCTTACTGAGTATATGACCCTA</genome_strand>
        <mrna_strand>TGATGCAGGCGATCATCCTCCGATAACTCCGATGCGTTCTGCTAGTGAGGATAGTTTGGGGAATGATGCATGGAAGTTGTACCAGTACATCTGCCAGCATTTTTTGGGAACTCTCTCTCCAGATTGCAAATATAGAAG......................................................................................................................................................................................................................................................................................................................................GATAAAAGTTGAATTTGAAAGTGGAGGAGAGCAATTTCAGTGCGTTGGGCAGCTTGCCACAGTCAAAGGATTCACCTCTATTATGCCATGGCTGGCTATTAGTGAGAAGAATCTTCCTGAGTTTGCTGTAGGAGAGAAAATCGAGGTTTCTAAAGTTGAACTAGATGAGGTATCACATAATCTGTTCAATTGAACTTCTCATTTGTTCTTCAGCTCTGGATTAAATTGCTAGTCTTTGCACTTCAGTAGTATTTATTGGTCCATTAGTTAATTCTTTTGATTTAGGGTACAACTACACCTCAATCTCAAGTTAGTTGGGGTTGTCTATATGAATCCTCATTATCCATCATTTTACCTGACACTTTGTTCTTTCTTTGCTATGAAATGACTTGAAACACCCGCAGCTTACTGAGTATATGACCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265758" ref_strand="+" ref_description="SGN-E265758 [cLEI-11-D11]">
      <seq>tccaggtacaagctgggcggcgattggctccaactcccctgggtatcagcttgataagagggtatcaatgcatagattctgatctctgtttgcctgacatacgaagtttcattgagcaccagatcactttggtagctaaaggtcaagcagatcattcaatggttgtgcagcatgtactagaacaattcagaaggaagttcagttattttgttaagcagattgataacatggacgcactatttgaagcccaattttctccactttcagactctggacgtctcctcagtaaatgtggcaaatgcttgcgatatatgaaatacatatctactcaaccagctcgactgtactgtggtacctgtgaggaagtctattatgtacctcagaagggtacagtcaagctatacaaggagcttacttgcccccttgataatttcgagctgttgctatgtagcatgcctggtcccgaaagcaagtcgttccctctctgtccttattgcttcaactgtcccccgtttgaaggcatagatacattttttggcgctcctaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="27423" stop="29396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27586" g_stop="27590" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27591" i_stop="27727" i_length="137">
            <donor d_prob="0.877" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27728" g_stop="27940" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="218" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27941" i_stop="28585" i_length="645">
            <donor d_prob="0.304" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28586" g_stop="28765" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="398" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28766" i_stop="28943" i_length="178">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28944" g_stop="29096" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="551" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E265758" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27586" e_stop="27590"/>
          <exon e_start="27728" e_stop="27940"/>
          <exon e_start="28586" e_stop="28765"/>
          <exon e_start="28944" e_stop="29096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGTTTTGCTATATGCATTGATTTCCAATTCTAGCTGCTGTAGATTGTCCTCTCTATTGCTTTGTGTTGTGGTTCTTTTGACGTGAAACAATCTTCTACTAGAAATTAGACTTCTGAGTTTGGCTGAATCAAATTGCAGGTACAAGCTGGGCGGCGATTGGCTCCAACTCCCCTGGGTATCAGCTTGATAAGAGGGTATCAATGCATAGATTCTGATCTCTGTTTGCCTGACATACGAAGTTTCATTGAGCACCAGATCACTTTGGTAGCTAAAGGTCAAGCAGATCATTCAATGGTTGTGCAGCATGTACTAGAACAATTCAGAAGGAAGTTCAGTTATTTTGTTAAGCAGGTATAAGATATTAAGCTCTTACGCGATGGTAGATAGCGCTTTGCTGCTTTCTTTCTTTCCAAACTAGAAACAAGCCGATGTTCACAAATAGACGACTGATTATGCTTTTTATCTTTACTGAATCTGTAACATGCTGATGCTCACTGATAAAAACTTAATCATGAGCTTCCAAATACATCTCTTAAGAACTAGTCATGCAAACATCACCTTGCAGTTGTGGATCTGCCCTGCTGGTCTCCATTATTGTTTTTCCTGAAAAGCTACTGGACATAAAATAATATCAGACCGATCCTTAGAAATGAGTGTTTTTGGTATAAGAAACAACTACAACATACCCAATGTAGTCCCGCAAAATAGGATCTGGGGAGGATAGAGTGTACGGAGACCTTACCCTACATCAGATAGATCCTCGGCTTAAGGAAAAAGTCCAAAGCAGCCTGGAAAAGTAAAACTTTAGTCTAAACAAAAATTCGGGATAATTACTGTTATTGACACTAGAACCTAGCTAAGAATTGGAGGGCAAAAAAGTTCTGAAGCATGTTCTGCACTTTATCCCACCTTTCTCTCATTTTTGGCCCATAAATTCTTTAACTTGTATTATCTAATGCTTATTACTCACTGAATCTCGTGTCTGGCTTCATGTAGATTGATAACATGGACGCACTATTTGAAGCCCAATTTTCTCCACTTTCAGACTCTGGACGTCTCCTCAGTAAATGTGGCAAATGCTTGCGATATATGAAATACATATCTACTCAACCAGCTCGACTGTACTGTGGTACCTGTGAGGAAGTCTATTATGTACCTCAGAAGGGTACAGTCAAGGTAAGTGTTTTATTGTTATAAAGTTACTTCCAACCCTTATGAATTAGAACGGAAAGAACTACTATATATGCCCTTTTATGTTGCAGCTTGAGAAGTTGGTAATTTCTCTTTCGATTAGCACCTTATTGTATGATCACCCAATTTTCCAACTAAACGTTGAACTTTAACTTTTTTTCAGCTATACAAGGAGCTTACTTGCCCCCTTGATAATTTCGAGCTGTTGCTATGTAGCATGCCTGGTCCCGAAGGCAAGTCGTTCCCTCTCTGTCCTTATTGCTTCAACTGTCCCCCGTTTGAAGGCATAGATACATTTTTTGGCGCTCCTAAAACT</genome_strand>
        <mrna_strand>TCCAG.........................................................................................................................................GTACAAGCTGGGCGGCGATTGGCTCCAACTCCCCTGGGTATCAGCTTGATAAGAGGGTATCAATGCATAGATTCTGATCTCTGTTTGCCTGACATACGAAGTTTCATTGAGCACCAGATCACTTTGGTAGCTAAAGGTCAAGCAGATCATTCAATGGTTGTGCAGCATGTACTAGAACAATTCAGAAGGAAGTTCAGTTATTTTGTTAAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATAACATGGACGCACTATTTGAAGCCCAATTTTCTCCACTTTCAGACTCTGGACGTCTCCTCAGTAAATGTGGCAAATGCTTGCGATATATGAAATACATATCTACTCAACCAGCTCGACTGTACTGTGGTACCTGTGAGGAAGTCTATTATGTACCTCAGAAGGGTACAGTCAAG..................................................................................................................................................................................CTATACAAGGAGCTTACTTGCCCCCTTGATAATTTCGAGCTGTTGCTATGTAGCATGCCTGGTCCCGAAAGCAAGTCGTTCCCTCTCTGTCCTTATTGCTTCAACTGTCCCCCGTTTGAAGGCATAGATACATTTTTTGGCGCTCCTAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549054" ref_strand="+" ref_description="SGN-E549054 [TUS-66-O2](-)">
      <seq>agtggatttcagcaagaaaacaacgcccttgaaagatggagctacactccataagggttgtattttttgcggcgagctgctgcattcccttgtggaaatgaaacatggaagatcgttttctaggcatggcaggagaggaagaggtagaggaagaggaagaggaggttatcccggaagaggtcggggcagcaacaaacaccaagacccaaaaatgagtttccgagatttctaaagggttgtttgattatcttactagaagtttgaaatatgatttagatttttctcataaaaatttgttaattagagatcattatgtcagagacaacccgttacttgtttggaattgaaatgtagttgtagttgtagggaggacattttgttgaactaggaacaaaatatatgctggtttattttagagaaaagaaaaaagatattgacagttgccccgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="29057" stop="39646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29357" g_stop="29808" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29809" i_stop="29977" i_length="169">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.759" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29978" g_stop="29999" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="474" r_length="22" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30000" i_stop="30450" i_length="451">
            <donor d_prob="0.546" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30451" g_stop="30476" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="500" r_length="26" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E549054" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29357" e_stop="29808"/>
          <exon e_start="29978" e_stop="29999"/>
          <exon e_start="30451" e_stop="30476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCGATTTCAACAAGAAAACAACGCCCTTGAAAGATGGAGCTACACTCCATAAGGGTTGTATTCTTTGCGACGAGCTGCTGCATTCACTTGTGGAAATGAAACATGGAAGATCGTTTTCTAGGCATGGCAGGAGAGGAAGAGGTAGAGGAAGAGGAAGAGGAGGTTATCGCGGAAGAGGACGGGGCAGCAACAAACAACAAGACCCAAAAATGAGTTTCCGAGATTTCTAAAGTGTTGTTTGATTATCTTACTAGAAGTTTGAAATATGATTTAGATTTTTCTCATAAAAATTTGTTAATTAGAGATCATTATGTCAGAGACAACACGTTACTTGTTTGGAATTGAGATGTAGTTGTAGTTGTAGGGAGGACATTTTGTTGAACTAGGAACAATATATATGCTGGTTTATTTTAGAGAAAAGAAAAAAGATATTGACAGTTGCACTGTTAAATCTATTTTAGTGAATATTCTATCAACAATGGAATATTAATACCCTAAATCTATCTGCTTATTATCTTATTTCAAGCTCTATATATTCTATGACAAACAACATATCATCAGAGATTTATATCGGTGAGTTTTCTATTTTTAATCAGATATTTTGGGATTCTGTGCATAGGAGTGGGAATGAAAGAAAACATGTGAGTGGGACAACACTTTTCTTATTAACGGGATCTTATATTACACAATTCAAATTAATTGGATCTTAATGTAGATGTTGATCACCAAACTTTAATATAGATATCGATCATCGAACGATTTTCTTTTTTAAAAAAATACAACAAACAAGTTGACTATTTCCTTTCTTTCTCAATTCCATTTTCTTTGGAAGGATATGTTAGTGGGAGTGGGTAGATGGGGGACCTGTTATTGTGGTCCAATTTTGAGACAAGAAATCATGTTACTTTACATAGCATGGGAATCTTATTATTATGTCAACAATTGGAAAATAAAAGAAAAAAAGTTATCGGGTGAAGAGAAATGATAATATTAAATACCTAAATACTTGAAAAGAATAATAAAACGGGATAGTAATATAAATGCTACTCATAACTTAAAAATCCAATTTTACCTTTCATTTCTTAAAGCAAGAAAAAAAGACAAAAAGAAAAAAAAAA</genome_strand>
        <mrna_strand>AGTGGATTTCAGCAAGAAAACAACGCCCTTGAAAGATGGAGCTACACTCCATAAGGGTTGTATTTTTTGCGGCGAGCTGCTGCATTCCCTTGTGGAAATGAAACATGGAAGATCGTTTTCTAGGCATGGCAGGAGAGGAAGAGGTAGAGGAAGAGGAAGAGGAGGTTATCCCGGAAGAGGTCGGGGCAGCAACAAACACCAAGACCCAAAAATGAGTTTCCGAGATTTCTAAAGGGTTGTTTGATTATCTTACTAGAAGTTTGAAATATGATTTAGATTTTTCTCATAAAAATTTGTTAATTAGAGATCATTATGTCAGAGACAACCCGTTACTTGTTTGGAATTGAAATGTAGTTGTAGTTGTAGGGAGGACATTTTGTTGAACTAGGAACAAAATATATGCTGGTTTATTTTAGAGAAAAGAAAAAAGATATTGACAGTTGCCCCGTTAA.........................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAACAAAAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377207" ref_strand="+" ref_description="SGN-E377207 [TUS-19-H4]">
      <seq>cacaagtagtagttggttaccactagttcttatcattttcccaaaataaaattgaaatttcaagattccaaatatttcaagaacattagacatgggattatatgaatcatgttgtgttatagtcctatattttatgttcttacttttgaatcctcaattttcatgttccatgtcatgtacaacacaaaagttcaccagcaacaaattgtatgaacattgcaatgacttgccacatttgaattgttaccttcattggacttacaatccaaaaatttcttctttaaatttagcatttgcagctactcctactaagcctaatggatggatttcatggggaatcaatccaaatgggacgggaatgattggtacacaatcgttgatcgcgtttaaaaatctcaacgatactatagttgtgaaaaccttcaagttgaactcgtataagtctatcgtggaaggggaacttgagtatcgcgtttcgaatatgcaagcaatgtatagtaatgagctgatggtaatttttgctagtgttgaattacctaaaggaatgaaagagttgaatcaagtatggcaagttggaagtttagtgttaaatgggacatttccaggaattcatgattttcaaattgaaaatttgaattcaaaaggaaaacttgatttgatgaaaggaaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="30456" stop="31729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30756" g_stop="31429" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E377207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30756" e_stop="31429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATCGCGTTTAAAAATCTCAACGATACTATAGTTGTGAAAACCTTCAAGTTGAACTCGTATAAGTCTATCGTGGAAGGGGAACTTGAGTATCGCGTTTCGAATATGCAAGCAATGTATAGTAATGAGCTGATGGTAATTTTTGCTAGTGTTGAATTACCTAAAGGAATGAAAGAGTTGAATCAAGTATGGCAAGTTGGAAGTTTAGTGTTAAATGGGACATTTCCAGGAATTCATGATTTTCAAATTGAAAATTTGAATTCAAAAGGAAAACTTGATTTGATGAAAGGAAAAAATG</genome_strand>
        <mrna_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATCGCGTTTAAAAATCTCAACGATACTATAGTTGTGAAAACCTTCAAGTTGAACTCGTATAAGTCTATCGTGGAAGGGGAACTTGAGTATCGCGTTTCGAATATGCAAGCAATGTATAGTAATGAGCTGATGGTAATTTTTGCTAGTGTTGAATTACCTAAAGGAATGAAAGAGTTGAATCAAGTATGGCAAGTTGGAAGTTTAGTGTTAAATGGGACATTTCCAGGAATTCATGATTTTCAAATTGAAAATTTGAATTCAAAAGGAAAACTTGATTTGATGAAAGGAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240644" ref_strand="+" ref_description="SGN-E240644 [cLED-21-N12]">
      <seq>cacaagtagtagttggttaccactagttcttatcattttcccaaaataaaattgaaatttcaagattccaaatatttcaagaacattagacatgggattatatgaatcatgttgtgttatagtcctatattttatgttcttacttttgaatcctcaattttcatgttccatgtcatgtacaacacaaaagttcaccagcaacaaattgtatgaacattgcaatgacttgccacatttgaattgttaccttcattggacttacaatccaaaaatttcttctttaaatttagcatttgcagctactcctactaagcctaatggatggatttcatggggaatcaatccaaatgggacgggaatgattggtacacaatcgttgatcgcgtttaaaaatctcaacgatactatagttgtgaaaaccttcaagttgaactcgtataagtctatcgtggaaggggaacttgagtatcgcgtttcgaatatgcaagcaatgtatagtaatgagctgatggtaatttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="30456" stop="31577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30756" g_stop="31277" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E240644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30756" e_stop="31277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATCGCGTTTAAAAATCTCAACGATACTATAGTTGTGAAAACCTTCAAGTTGAACTCGTATAAGTCTATCGTGGAAGGGGAACTTGAGTATCGCGTTTCGAATATGCAAGCAATGTATAGTAATGAGCTGATGGTAATTTTTGC</genome_strand>
        <mrna_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATCGCGTTTAAAAATCTCAACGATACTATAGTTGTGAAAACCTTCAAGTTGAACTCGTATAAGTCTATCGTGGAAGGGGAACTTGAGTATCGCGTTTCGAATATGCAAGCAATGTATAGTAATGAGCTGATGGTAATTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238098" ref_strand="+" ref_description="SGN-E238098 [cLED-22-G6]">
      <seq>cacaagtagtagttggttaccactagttcttatcattttcccaaaataaaattgaaatttcaagattccaaatatttcaagaacattagacatgggattatatgaatcatgttgtgttatagtcctatattttatgttcttacttttgaatcctcaattttcatgttccatgtcatgtacaacacaaaagttcaccagcaacaaattgtatgaacattgcaatgacttgccacatttgaattgttaccttcattggacttacaatccaaaaatttcttctttaaatttagcatttgcagctactcctactaagcctaatggatggatttcatggggaatcaatccaaatgggacgggaatgattggtacacaatcgttgatcgcgtttaaaaatctcaacgatactatagttgtgaaaaccttcaagttgaactcgtataagtctatcgtggaaggggaacttgagtatcgcgtttcgaatatgcaagcaatgtatagtaatgagctgatggtaatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="30456" stop="31576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30756" g_stop="31276" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E238098" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30756" e_stop="31276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATCGCGTTTAAAAATCTCAACGATACTATAGTTGTGAAAACCTTCAAGTTGAACTCGTATAAGTCTATCGTGGAAGGGGAACTTGAGTATCGCGTTTCGAATATGCAAGCAATGTATAGTAATGAGCTGATGGTAATTTTTG</genome_strand>
        <mrna_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATCGCGTTTAAAAATCTCAACGATACTATAGTTGTGAAAACCTTCAAGTTGAACTCGTATAAGTCTATCGTGGAAGGGGAACTTGAGTATCGCGTTTCGAATATGCAAGCAATGTATAGTAATGAGCTGATGGTAATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236333" ref_strand="+" ref_description="SGN-E236333 [cLED-13-C11]">
      <seq>cacaagtagtagttggttaccactagttcttatcattttcccaaaataaaattgaaatttcaagattccaaatatttcaagaacattagacatgggattatatgaatcatgttgtgttatagtcctatattttatgttcttacttttgaatcctcaattttcatgttccatgtcatgtacaacacaaaagttcaccagcaacaaattgtatgaacattgcaatgacttgccacatttgaattgttaccttcattggacttacaatccaaaaatttcttctttaaatttagcatttgcagctactcctactaagcctaatggatgggatttcatggggaatcaatccaaatgggacgggaatgattggtacacaatcgttgatcgcgtttaaaaatctcaacgatactatagttgtgaaaaccttcaagttgaactcgtataagtctatcgtggaaggggaacttgagtatcgcgtttcgaatatgcaagcaatgtatagtaatgagctgatggtaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="30456" stop="31575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30756" g_stop="31275" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E236333" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30756" e_stop="31275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGAT-GGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATCGCGTTTAAAAATCTCAACGATACTATAGTTGTGAAAACCTTCAAGTTGAACTCGTATAAGTCTATCGTGGAAGGGGAACTTGAGTATCGCGTTTCGAATATGCAAGCAATGTATAGTAATGAGCTGATGGTAATTTTT</genome_strand>
        <mrna_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATCGCGTTTAAAAATCTCAACGATACTATAGTTGTGAAAACCTTCAAGTTGAACTCGTATAAGTCTATCGTGGAAGGGGAACTTGAGTATCGCGTTTCGAATATGCAAGCAATGTATAGTAATGAGCTGATGGTAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231280" ref_strand="+" ref_description="SGN-E231280 [cLED-5-H10]">
      <seq>cacaagtagtagttggttaccactagttcttatcattttcccaaaataaaattgaaatttcaagattccaaatatttcaagaacattagacatgggattatatgaatcatgttgtgttatagtcctatattttatgttcttacttttgaatcctcaattttcatgttccatgtcatgtacaacacaaaagttcaccagcaacaaattgtatgaacattgcaatgacttgccacatttgaattgttaccttcattggacttacaatccaaaaatttcttctttaaatttagcatttgcagctactcctactaagcctaatggatggatttcatggggaatcaatccaaatgggacgggaatgattggtacacaatcgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="30456" stop="31437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30756" g_stop="31137" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E231280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30756" e_stop="31137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATC</genome_strand>
        <mrna_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239846" ref_strand="+" ref_description="SGN-E239846 [cLED-29-N17]">
      <seq>cacaagtagtagttggttaccactagttcttatcattttcccaaaataaaattgaaatttcaagattccaaatatttcaagaacattagacatgggattatatgaatcatgttgtgttatagtcctatattttatgttcttacttttgaatcctcaattttcatgttccatgtcatgtacaacacaaaagttcaccagcaacaaattgtatgaacattgcaatgacttgccacatttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="30456" stop="31296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30756" g_stop="30996" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E239846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30756" e_stop="30996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAAT</genome_strand>
        <mrna_strand>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377206" ref_strand="+" ref_description="SGN-E377206 [TUS-19-H4](-)">
      <seq>tgatcgcaaggtatctaagaccatttttggatccaatatggttttatgttcatgtgacttgtcaaatatcatcttatattattggagtttctggttgggccactggtctaaaacttggaagccaatccaaaggaattatttacaattctcatagagattttggtattgccttgttttgtcttgcaactctacaggtgtttgcaatatttctgaggccaaagaaggaacacaaatacagattttattggaatatgtatcatcatggagttggatatggtgtacttgttctaggtatcattaatgtatttaaaggtcttgaaattttacaaccacaaagcaaatggaaattggcttatattattttcctatcaattattggaggaattgctcttattttagaagcaattacttggataattgtacttaaaaggaagcctagaaaatcaaataacaaacttcatgatggacaaaatggaagacaacaacctctcacttcttgaagttattattgagttttattttttcatatatatatatatttgtttttctatggttgggttgaatttattttaataattttcttcttgtttagaatccatactcttatgagagtattgttgttgtattgcttcattttagtatttatatagtaaggaatataaatattgttgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="31403" stop="33166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31703" g_stop="31896" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31897" i_stop="32384" i_length="488">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32385" g_stop="32866" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="676" r_length="482" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E377206" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31703" e_stop="31896"/>
          <exon e_start="32385" e_stop="32866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCGCAAGGTATCTAAGAACATTTTTGGATCCAATATGGTTTTATGTTCATGTGACTTGTCAAATATCATCTTATATTATTGGAGTTTCTGGTTGGGCCACTGGTCTAAAACTTGGAAGCCAATCCAAAGGAATTATTTACAATTCTCATAGAGATTTTGGTATTGCCTTGTTTTGTCTTGCAACTCTACAGGTATTTTCCTAAATCCCCAATGATTCTTTTTCGACGTTTACGCTATATATATCGTCAGTCAAGTCACAAAACTCCCGAATATATCATAATAATCTTAAAAGTAAGTTGCTAATAAGTTCGTTAATATCATCCACCTCCAATCTTAATTGTGTTTTCAACTCGCAAGATATATAAAAAAATATCAGAGTTGCTAGGAAGTTTAAAAAAGGAACAGGAAAAGTACCATGATATATATATATAGTGTAAGAAAATTACAAATTAAAAAGGTGTATATAGCCAACTATTACACCAACACCTAATTGTGTTTGTTCACGTTTAAACAAATGAGAAAAAATTACCTAGCTTTATTGGATTCATATATAATCATGATCTTACATACTTTTCGTTCACTTGTTAGGTCATATATCGTCATGTGCTTAGATGTTTGTATTCTGCAAAATTGATGCTAATTTATTTTTATTTTTTCCTCCAAAATTATGAAAATGTAGGTGTTTGCAATATTTTTGAGGCCAAAGAAGGAACACAAATACAGATTTTATTGGAATATGTATCATCATGGAGTTGGATATGGTGTACTTGTTCTAGGTATCATTAATGTATTTAAAGGTCTTGAAATTTTACAACCACAAAGCAAATGGAAATTGGCTTATATTATTTTCCTATCAATTATTGGAGGAATTGCTCTTATTTTAGAAGCAATTACTTGGATAATTGTACTTAAAAGGAAGCCTAGAAAATCAAATAACAAACTTCATGATGGACAAAATGGAAGACAACAACCTCTCACTTCTTGAAGTTATTATTGAGTTTTATTTTTTCATATATATATATATTTGTTTTTCTATGGTTGGGTTGAATTTATTTTAATAATTTTCTTCTTGTTTAGAATCCATACTCTTATGAGAGTATTGTTGTTGTATTGCTTCATTTTAGTATTTATATAGTAAGGAATATAAATATTGTTGCTATT</genome_strand>
        <mrna_strand>TGATCGCAAGGTATCTAAGACCATTTTTGGATCCAATATGGTTTTATGTTCATGTGACTTGTCAAATATCATCTTATATTATTGGAGTTTCTGGTTGGGCCACTGGTCTAAAACTTGGAAGCCAATCCAAAGGAATTATTTACAATTCTCATAGAGATTTTGGTATTGCCTTGTTTTGTCTTGCAACTCTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGCAATATTTCTGAGGCCAAAGAAGGAACACAAATACAGATTTTATTGGAATATGTATCATCATGGAGTTGGATATGGTGTACTTGTTCTAGGTATCATTAATGTATTTAAAGGTCTTGAAATTTTACAACCACAAAGCAAATGGAAATTGGCTTATATTATTTTCCTATCAATTATTGGAGGAATTGCTCTTATTTTAGAAGCAATTACTTGGATAATTGTACTTAAAAGGAAGCCTAGAAAATCAAATAACAAACTTCATGATGGACAAAATGGAAGACAACAACCTCTCACTTCTTGAAGTTATTATTGAGTTTTATTTTTTCATATATATATATATTTGTTTTTCTATGGTTGGGTTGAATTTATTTTAATAATTTTCTTCTTGTTTAGAATCCATACTCTTATGAGAGTATTGTTGTTGTATTGCTTCATTTTAGTATTTATATAGTAAGGAATATAAATATTGTTGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545568" ref_strand="+" ref_description="SGN-E545568 [TUS-68-H19](-)">
      <seq>tagagacgttagtattgaagaaggcgcgaagcttgcagaagcagaaggattgttcttcatggagacatccgcgttggattctacaaacgttaataaggctttcgagattgttatccgtgaaatctatagcaatgtcagtcgaaaggtcttgaattcggattcctacaaggcagagttatctattaacagggtaaaccttgtaaaagacgacggagaaggatcgaaacgatcttggagcagttgttgctcaagatgaaccatgtcttaactggttatacattttgttattgttagctcaagattaagagatttttcagtattcattcaattcagtaacacagtgaattgtataaatctctcttaactctgattgagcatatgtattctcacttttaagttttattactcttaaacgataaattgtttgattcgatgtaaacatcaggtacgaggaactattttttatggagacatatttatttttagcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="35009" stop="33915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34212" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E545568" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGACGTTAGTATTGAAGAAGGCGCGAAGCTTGCAGAAGCAGAAGGATTGTTCTTCATGGAGACATCCGCGTTGGATTCTACAAACGTTAATAAGGCTTTCGAGATTGTTATCCGTGAAATCTATAGCAATGTCAGTCGAAAGGTCTTGAATTCGGATTCCTACAAGGCAGAGTTATCTATTAACAGGGTAAACCTTGTAAAAGACGACGGAGAAGGATCGAAACGATCTTGGAGCAGTTGTTGCTCAAGATGAACCATGTCTTAACTGGTTATACATTTTGTTATTGTTAGCTCAAGATTAAGAGATTTTTCAGTATTCATTCAATTCAGTAACACAGTGAATTGTATAAATCTCTCTTAACTCTGATTGAGCATATGTATTCTCACTTTTAAGTTTTATTACTCTTAAACGATAAATTGTTTGATTCGATGTAAACATCAGGTACGAGGAACTATTTTTTATGGAGACATATTTATTTTTAGCAGACTACATGT</genome_strand>
        <mrna_strand>TAGAGACGTTAGTATTGAAGAAGGCGCGAAGCTTGCAGAAGCAGAAGGATTGTTCTTCATGGAGACATCCGCGTTGGATTCTACAAACGTTAATAAGGCTTTCGAGATTGTTATCCGTGAAATCTATAGCAATGTCAGTCGAAAGGTCTTGAATTCGGATTCCTACAAGGCAGAGTTATCTATTAACAGGGTAAACCTTGTAAAAGACGACGGAGAAGGATCGAAACGATCTTGGAGCAGTTGTTGCTCAAGATGAACCATGTCTTAACTGGTTATACATTTTGTTATTGTTAGCTCAAGATTAAGAGATTTTTCAGTATTCATTCAATTCAGTAACACAGTGAATTGTATAAATCTCTCTTAACTCTGATTGAGCATATGTATTCTCACTTTTAAGTTTTATTACTCTTAAACGATAAATTGTTTGATTCGATGTAAACATCAGGTACGAGGAACTATTTTTTATGGAGACATATTTATTTTTAGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545569" ref_strand="+" ref_description="SGN-E545569 [TUS-68-H19]">
      <seq>tagagacgttagtattgaagaaggcgcgaagcttgcagaagcagaaggattgttcttcatggagacatccgcgttggattctacaaacgttaataaggctttcgagattgttatccgtgaaatctatagcaatgtcagtcgaaaggtcttgaattcggattcctacaaggcagagttatctattaacagggtaaaccttgtaaaagacgacggagaaggatcgaaacgatcttggagcagttgttgctcaagatgaaccatgtcttaactggttatacattttgttattgttagctcaagattaagagatttttcagtattcattcaattcagtaacacagtgaattgtataaatctctcttaactctgattgagcatatgtattctcacttttaagttttattactcttaaacgataaattgtttgattcgatgtaaacatcaggtacgaggaactattttttatggagacatatttatttttagcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="35009" stop="33915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34709" g_stop="34212" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E545569" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34709" e_stop="34212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGACGTTAGTATTGAAGAAGGCGCGAAGCTTGCAGAAGCAGAAGGATTGTTCTTCATGGAGACATCCGCGTTGGATTCTACAAACGTTAATAAGGCTTTCGAGATTGTTATCCGTGAAATCTATAGCAATGTCAGTCGAAAGGTCTTGAATTCGGATTCCTACAAGGCAGAGTTATCTATTAACAGGGTAAACCTTGTAAAAGACGACGGAGAAGGATCGAAACGATCTTGGAGCAGTTGTTGCTCAAGATGAACCATGTCTTAACTGGTTATACATTTTGTTATTGTTAGCTCAAGATTAAGAGATTTTTCAGTATTCATTCAATTCAGTAACACAGTGAATTGTATAAATCTCTCTTAACTCTGATTGAGCATATGTATTCTCACTTTTAAGTTTTATTACTCTTAAACGATAAATTGTTTGATTCGATGTAAACATCAGGTACGAGGAACTATTTTTTATGGAGACATATTTATTTTTAGCAGACTACATGT</genome_strand>
        <mrna_strand>TAGAGACGTTAGTATTGAAGAAGGCGCGAAGCTTGCAGAAGCAGAAGGATTGTTCTTCATGGAGACATCCGCGTTGGATTCTACAAACGTTAATAAGGCTTTCGAGATTGTTATCCGTGAAATCTATAGCAATGTCAGTCGAAAGGTCTTGAATTCGGATTCCTACAAGGCAGAGTTATCTATTAACAGGGTAAACCTTGTAAAAGACGACGGAGAAGGATCGAAACGATCTTGGAGCAGTTGTTGCTCAAGATGAACCATGTCTTAACTGGTTATACATTTTGTTATTGTTAGCTCAAGATTAAGAGATTTTTCAGTATTCATTCAATTCAGTAACACAGTGAATTGTATAAATCTCTCTTAACTCTGATTGAGCATATGTATTCTCACTTTTAAGTTTTATTACTCTTAAACGATAAATTGTTTGATTCGATGTAAACATCAGGTACGAGGAACTATTTTTTATGGAGACATATTTATTTTTAGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311006" ref_strand="+" ref_description="SGN-E311006 [cLEZ-17-M3]">
      <seq>agagacgttagtattgaagaaggcgcgaagcttgcagaagcagaaggattgttcttcatggagacatccgcgttggattctacaaacgttaataaggctttcgagattgttatccgtgaaatctatagcaatgtcagtcgaaaggtcttgaattcggattcctacaaggcagagttatctattaacagggtaaaccttgtaaaagacgacggagaaggatcgaaacgatcttggagcagttgttgctcaagatgaaccatgtcttaactggttatacattttgttattgttagctcaagattaagagatttttcagtattcattcaattcagtaacacagtgaattgtataaatctctcttaactctgattgagcatatgtattctcacttttaagttttattactcttaaacgataaattgtttgattcgatgtaaacatcaggtacgaggaactattttttatggagacatatttatttttagcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="35008" stop="33915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34708" g_stop="34212" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E311006" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34708" e_stop="34212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACGTTAGTATTGAAGAAGGCGCGAAGCTTGCAGAAGCAGAAGGATTGTTCTTCATGGAGACATCCGCGTTGGATTCTACAAACGTTAATAAGGCTTTCGAGATTGTTATCCGTGAAATCTATAGCAATGTCAGTCGAAAGGTCTTGAATTCGGATTCCTACAAGGCAGAGTTATCTATTAACAGGGTAAACCTTGTAAAAGACGACGGAGAAGGATCGAAACGATCTTGGAGCAGTTGTTGCTCAAGATGAACCATGTCTTAACTGGTTATACATTTTGTTATTGTTAGCTCAAGATTAAGAGATTTTTCAGTATTCATTCAATTCAGTAACACAGTGAATTGTATAAATCTCTCTTAACTCTGATTGAGCATATGTATTCTCACTTTTAAGTTTTATTACTCTTAAACGATAAATTGTTTGATTCGATGTAAACATCAGGTACGAGGAACTATTTTTTATGGAGACATATTTATTTTTAGCAGACTACATGT</genome_strand>
        <mrna_strand>AGAGACGTTAGTATTGAAGAAGGCGCGAAGCTTGCAGAAGCAGAAGGATTGTTCTTCATGGAGACATCCGCGTTGGATTCTACAAACGTTAATAAGGCTTTCGAGATTGTTATCCGTGAAATCTATAGCAATGTCAGTCGAAAGGTCTTGAATTCGGATTCCTACAAGGCAGAGTTATCTATTAACAGGGTAAACCTTGTAAAAGACGACGGAGAAGGATCGAAACGATCTTGGAGCAGTTGTTGCTCAAGATGAACCATGTCTTAACTGGTTATACATTTTGTTATTGTTAGCTCAAGATTAAGAGATTTTTCAGTATTCATTCAATTCAGTAACACAGTGAATTGTATAAATCTCTCTTAACTCTGATTGAGCATATGTATTCTCACTTTTAAGTTTTATTACTCTTAAACGATAAATTGTTTGATTCGATGTAAACATCAGGTACGAGGAACTATTTTTTATGGAGACATATTTATTTTTAGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316967" ref_strand="+" ref_description="SGN-E316967 [cTOA-27-F16]">
      <seq>ccaaatttcccaaaaccatgaaaaaagcttccaattcactaaactaactccaccccatctctcaaaattcaatcttttttctatctctgtccaaatcttgattattagattattactgataatgtctgttgcaccaatgggcatagtttcaggaggcattgggtatctttcacagttgtttacaaatgatataactgcttctactcatcacctttgttgtttttcattgaattcaagcccattgcatatgaatttttctacgagtggttgtttggtgaaaaggggttctttgttaagccctagattttcagtttctactactggtaatgctaagattgatggagttgatgatcacttatctttgtcacctgatgatatcaaaccagctccgaattctgctgattggaaagcatcaaggacatacagtgagatgggactgatatttgagggcaatgttgaaggcttcaatggtggtggtttgctgattctattttattctctcgagagttttctgcccttcccacagatgatcccttatcactcttgtaaacaaccacataagactattcaacagattgcgagggacttgaccggttctgtcctctctgtgaatgtaatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="40521" stop="42890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40821" g_stop="41211" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41212" i_stop="42182" i_length="971">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42183" g_stop="42342" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="551" r_length="160" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42343" i_stop="42523" i_length="181">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42524" g_stop="42585" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="613" r_length="62" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E316967" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40821" e_stop="41211"/>
          <exon e_start="42183" e_stop="42342"/>
          <exon e_start="42524" e_stop="42585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTTCCCAAAACCATGAAAAAAGCTTCCAATTCGCAAAACTAACTCCACCCCATCTCTCAAAATTCAATCTTTTTTCAATCTCTGTCCAAATCTTGATTATTAGATTAGTACTGATAATGTCTGTTGCAGCAATGGGCATAGTTTCAGGAGGCATTGGGTATCTTTCACAGTTGTTTACAAGTGATATAGCTGCTTCTACTCATCAGTTTTGTTGTTTTTCAGTGAATTCAAGCCCATTGCATATGAATTTTTCTAGGAGTGGTTGTTTGGTGAAAAGGGGTTCTTTGTTAAGCCCTAGAGTTTCAGTTTCTACTACTGGTAATGCTAAGATTGATGGAGTTGATGATCAGTTATCTTTGTCACCTGATGAGATCAAACCAGCTCGGGTGAGACCCTTTATTCGTATTTGCATTGTGAACATTTTGCAAATTTGCAACTTGAAAAATTTGAGTTTTTGAAGTTGGGATTTTTGGAATTTGAAGTTGTGTTTTAACATGCATTTCACTTGAAAAAAGTTTGAAATTTGAAGTTTTGTGATGGAAAGTCCCAAGAATCTTGAAAATATTTGAAGATCAGATTTTTGAATTGATCAAATTTCGTGGCCAAACAGATATTTGAATATATATTTTTTTGAAAGCTACTCCCAGGTCAAACGCTAGCTTAAGCCTTTATAGACTTCCTATATTGCTTGTGGATGGGTGTTAATTTTTTTAAAAGGACAGTCATTGATAAATGCAATTGTTTTCTCCATTATGATGCTCTCATGACGAACATCCTTTCATCATCTGAGTGGGTGGTTAAGCAGGGTTTACTTTGTTAATAAATACATCCAATGAATCAAGAGAATGCAGAAGAGTGGTAGACACAGCTGAATGGATAAAATAGATTGACTTGGACTGCGGTTGGATTAGCGGAGTTAGAATTGAGAGGTCTTGGAGTGAACTTGTTAAAAGTCCCAGCATGTTGAATCTAAGGACTTTTTAAAAATAATCATGGTTCAGACAAAGTTTTGTTGGTTATGCAGTAGATATATCCAAGTAGTGTTGTTTAGGGCCTGATTATGGCTTCAGTTCCATATTACTTATGCAAATATCTTTGGAAAGATAAAATTCAGCTAGATCAAATGGATCCTGATATATATGTCATGTATCTTTGGAGTTTTTGAGCTGCAAGGTGATTGGCCTTCGCATTGGTGATGAATATATTCTAAAGATTTTACCATCTGTATTTCTTTTCATATTGCTGACTAACTTGATTCAGCACTATAATATATGCATTACCTTGTTCTACACTTCCCTTTAGATTATTGTGGTTTGAAGCGTATGTAATATAGTACTCCTTTACTACAAAGTATTAGAAGTCTGCTGATTGGAAAGCAGCAAGGACATACAGTGAGAGGGGACTGATATTTGAGGGCAAGGTTGAAGGCTTCAATGGTGGTGGTTTGCTGATTCGATTTTATTCTCTCGTGGGTTTTCTGCCCTTCCCACAGATGAGCCCTTATCACTCTTGTAAAGGTACTAAGTTCACCTTTACAGCTTATTTTTCGTTTCAAATCACCATTTTGTGCTGATCCTTGATATTTCTAAGCTTCATAGGTTGATTAATGTATCACATGTTTCTACATAGAAGTTATGGTAATATATGCATACTTACTGAGGGTTTATCTGTCTTTCTTGTTACCCTTACTTTTTGTAGAACCACAAAAGACTATTCAAGAGATTGCGAGGGACTTGACCGGTTCTGTCCTCTCTGTGAAG</genome_strand>
        <mrna_strand>CCAAATTTCCCAAAACCATGAAAAAAGCTTCCAATTCACTAAACTAACTCCACCCCATCTCTCAAAATTCAATCTTTTTTCTATCTCTGTCCAAATCTTGATTATTAGATTATTACTGATAATGTCTGTTGCACCAATGGGCATAGTTTCAGGAGGCATTGGGTATCTTTCACAGTTGTTTACAAATGATATAACTGCTTCTACTCATCACCTTTGTTGTTTTTCATTGAATTCAAGCCCATTGCATATGAATTTTTCTACGAGTGGTTGTTTGGTGAAAAGGGGTTCTTTGTTAAGCCCTAGATTTTCAGTTTCTACTACTGGTAATGCTAAGATTGATGGAGTTGATGATCACTTATCTTTGTCACCTGATGATATCAAACCAGCTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCTGCTGATTGGAAAGCATCAAGGACATACAGTGAGATGGGACTGATATTTGAGGGCAATGTTGAAGGCTTCAATGGTGGTGGTTTGCTGATTCTATTTTATTCTCTCGAGAGTTTTCTGCCCTTCCCACAGATGATCCCTTATCACTCTTGTAAAC.....................................................................................................................................................................................AACCACATAAGACTATTCAACAGATTGCGAGGGACTTGACCGGTTCTGTCCTCTCTGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317007" ref_strand="+" ref_description="SGN-E317007 [cTOA-27-E7]">
      <seq>ccaaatttcccaaaaccatgaaaaaagcttccaattcgcaaaactaactccaccccatctctcaaaattcaatcttttttcaatctctgtccaaatcttgattattagattagtactgataatgtctgttgcagcaatgggcatagtttcaggaggcattgggtatctttcacagttgtttacaagtgatatagctgcttctactcatcagttttgttgtttttcagtgaattcaagcccattgcatatgaatttttctaggagtggttgtttggtgaaaaggggttctttgttaagccctagagtttcagtttctactactggtaatgctaagattgatggagttgatgatcagttatctttgtcacctgatgagatcaaaccagctcggaagtctgctgattggaaagcagcaaggacatacagtgagaggggactgatatttgagggcaaggttgaaggcttcaatggtggtggtttgctgattcgattttattctctcgtgggttttctgcccttcccacagatgagcccttatcactcttgtnaagaacacaaaagactattcaagagattgcgaggggacttgacgggtctgtcctctctgtgaaggtatccaagctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="40521" stop="42899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40821" g_stop="41211" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41212" i_stop="42182" i_length="971">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42183" g_stop="42342" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="551" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42343" i_stop="42523" i_length="181">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42524" g_stop="42585" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="612" r_length="61" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E317007" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40821" e_stop="41211"/>
          <exon e_start="42183" e_stop="42342"/>
          <exon e_start="42524" e_stop="42585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTTCCCAAAACCATGAAAAAAGCTTCCAATTCGCAAAACTAACTCCACCCCATCTCTCAAAATTCAATCTTTTTTCAATCTCTGTCCAAATCTTGATTATTAGATTAGTACTGATAATGTCTGTTGCAGCAATGGGCATAGTTTCAGGAGGCATTGGGTATCTTTCACAGTTGTTTACAAGTGATATAGCTGCTTCTACTCATCAGTTTTGTTGTTTTTCAGTGAATTCAAGCCCATTGCATATGAATTTTTCTAGGAGTGGTTGTTTGGTGAAAAGGGGTTCTTTGTTAAGCCCTAGAGTTTCAGTTTCTACTACTGGTAATGCTAAGATTGATGGAGTTGATGATCAGTTATCTTTGTCACCTGATGAGATCAAACCAGCTCGGGTGAGACCCTTTATTCGTATTTGCATTGTGAACATTTTGCAAATTTGCAACTTGAAAAATTTGAGTTTTTGAAGTTGGGATTTTTGGAATTTGAAGTTGTGTTTTAACATGCATTTCACTTGAAAAAAGTTTGAAATTTGAAGTTTTGTGATGGAAAGTCCCAAGAATCTTGAAAATATTTGAAGATCAGATTTTTGAATTGATCAAATTTCGTGGCCAAACAGATATTTGAATATATATTTTTTTGAAAGCTACTCCCAGGTCAAACGCTAGCTTAAGCCTTTATAGACTTCCTATATTGCTTGTGGATGGGTGTTAATTTTTTTAAAAGGACAGTCATTGATAAATGCAATTGTTTTCTCCATTATGATGCTCTCATGACGAACATCCTTTCATCATCTGAGTGGGTGGTTAAGCAGGGTTTACTTTGTTAATAAATACATCCAATGAATCAAGAGAATGCAGAAGAGTGGTAGACACAGCTGAATGGATAAAATAGATTGACTTGGACTGCGGTTGGATTAGCGGAGTTAGAATTGAGAGGTCTTGGAGTGAACTTGTTAAAAGTCCCAGCATGTTGAATCTAAGGACTTTTTAAAAATAATCATGGTTCAGACAAAGTTTTGTTGGTTATGCAGTAGATATATCCAAGTAGTGTTGTTTAGGGCCTGATTATGGCTTCAGTTCCATATTACTTATGCAAATATCTTTGGAAAGATAAAATTCAGCTAGATCAAATGGATCCTGATATATATGTCATGTATCTTTGGAGTTTTTGAGCTGCAAGGTGATTGGCCTTCGCATTGGTGATGAATATATTCTAAAGATTTTACCATCTGTATTTCTTTTCATATTGCTGACTAACTTGATTCAGCACTATAATATATGCATTACCTTGTTCTACACTTCCCTTTAGATTATTGTGGTTTGAAGCGTATGTAATATAGTACTCCTTTACTACAAAGTATTAGAAGTCTGCTGATTGGAAAGCAGCAAGGACATACAGTGAGAGGGGACTGATATTTGAGGGCAAGGTTGAAGGCTTCAATGGTGGTGGTTTGCTGATTCGATTTTATTCTCTCGTGGGTTTTCTGCCCTTCCCACAGATGAGCCCTTATCACTCTTGTAAAGGTACTAAGTTCACCTTTACAGCTTATTTTTCGTTTCAAATCACCATTTTGTGCTGATCCTTGATATTTCTAAGCTTCATAGGTTGATTAATGTATCACATGTTTCTACATAGAAGTTATGGTAATATATGCATACTTACTGAGGGTTTATCTGTCTTTCTTGTTACCCTTACTTTTTGTAGAACCACAAAAGACTATTCAAGAGATTGCGA-GGGACTTGACCGGTTCTGTCCTCTCTGTGAAG</genome_strand>
        <mrna_strand>CCAAATTTCCCAAAACCATGAAAAAAGCTTCCAATTCGCAAAACTAACTCCACCCCATCTCTCAAAATTCAATCTTTTTTCAATCTCTGTCCAAATCTTGATTATTAGATTAGTACTGATAATGTCTGTTGCAGCAATGGGCATAGTTTCAGGAGGCATTGGGTATCTTTCACAGTTGTTTACAAGTGATATAGCTGCTTCTACTCATCAGTTTTGTTGTTTTTCAGTGAATTCAAGCCCATTGCATATGAATTTTTCTAGGAGTGGTTGTTTGGTGAAAAGGGGTTCTTTGTTAAGCCCTAGAGTTTCAGTTTCTACTACTGGTAATGCTAAGATTGATGGAGTTGATGATCAGTTATCTTTGTCACCTGATGAGATCAAACCAGCTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCTGCTGATTGGAAAGCAGCAAGGACATACAGTGAGAGGGGACTGATATTTGAGGGCAAGGTTGAAGGCTTCAATGGTGGTGGTTTGCTGATTCGATTTTATTCTCTCGTGGGTTTTCTGCCCTTCCCACAGATGAGCCCTTATCACTCTTGTNAAG.....................................................................................................................................................................................AA-CACAAAAGACTATTCAAGAGATTGCGAGGGGACTTGA-CGGGTCTGTCCTCTCTGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336068" ref_strand="+" ref_description="SGN-E336068 [cTOE-12-M17]">
      <seq>caaaaccatgaaaaaagcttccaattcgcaaaactaactccaccccatctctcaaaattcaatcttttttcaatctctgtccaaatcttgattattagattagtactgataatgtctgttgcagcaatgggcatagtttcaggaggcattgggtatctttcacagttgtttacaagtgatatagctgcttctactcatcagttttgttgtttttcagtgaattcaagcccattgcatatgaatttttctaggagtggttgtttggtgaaaaggggttctttgttaagccctagagtttcagtttctactactggtaatgctaagattgatggagttgatgatcagttatctttgtcacctgatgagatcaaaccagctcgggtgagaccctttattcgtatttgcattgtgaacattttgcaaatttgcaacttgaaaaatttgagtttttgaagctgggatttttggaatttgaagttgtgttttaacatgcatttcacttgataaaagtttgaaatttgaaagtttgtgatggaaagtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="40531" stop="41673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40831" g_stop="41373" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E336068" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40831" e_stop="41373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCATGAAAAAAGCTTCCAATTCGCAAAACTAACTCCACCCCATCTCTCAAAATTCAATCTTTTTTCAATCTCTGTCCAAATCTTGATTATTAGATTAGTACTGATAATGTCTGTTGCAGCAATGGGCATAGTTTCAGGAGGCATTGGGTATCTTTCACAGTTGTTTACAAGTGATATAGCTGCTTCTACTCATCAGTTTTGTTGTTTTTCAGTGAATTCAAGCCCATTGCATATGAATTTTTCTAGGAGTGGTTGTTTGGTGAAAAGGGGTTCTTTGTTAAGCCCTAGAGTTTCAGTTTCTACTACTGGTAATGCTAAGATTGATGGAGTTGATGATCAGTTATCTTTGTCACCTGATGAGATCAAACCAGCTCGGGTGAGACCCTTTATTCGTATTTGCATTGTGAACATTTTGCAAATTTGCAACTTGAAAAATTTGAGTTTTTGAAGTTGGGATTTTTGGAATTTGAAGTTGTGTTTTAACATGCATTTCACTTGAAAAAAGTTTGAAATTTGAAGTTTTGTGATGGAAAGTCCC</genome_strand>
        <mrna_strand>CAAAACCATGAAAAAAGCTTCCAATTCGCAAAACTAACTCCACCCCATCTCTCAAAATTCAATCTTTTTTCAATCTCTGTCCAAATCTTGATTATTAGATTAGTACTGATAATGTCTGTTGCAGCAATGGGCATAGTTTCAGGAGGCATTGGGTATCTTTCACAGTTGTTTACAAGTGATATAGCTGCTTCTACTCATCAGTTTTGTTGTTTTTCAGTGAATTCAAGCCCATTGCATATGAATTTTTCTAGGAGTGGTTGTTTGGTGAAAAGGGGTTCTTTGTTAAGCCCTAGAGTTTCAGTTTCTACTACTGGTAATGCTAAGATTGATGGAGTTGATGATCAGTTATCTTTGTCACCTGATGAGATCAAACCAGCTCGGGTGAGACCCTTTATTCGTATTTGCATTGTGAACATTTTGCAAATTTGCAACTTGAAAAATTTGAGTTTTTGAAGCTGGGATTTTTGGAATTTGAAGTTGTGTTTTAACATGCATTTCACTTGATAAAAGTTTGAAATTTGAAAGTTTGTGATGGAAAGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739284" ref_strand="+" ref_description="SGN-E739284 [LC16DC10]">
      <seq>cattcatgaaaaaagcttccaattcgcaaaactaactccaccccatctctcaaaattcaatcttttttcaatctctgtccaaatcttgattattagattagtactgataatgtctgttgcagcaatgggcatagtttcaggaggcattgggtatctttcacagttgtttacaagtgatatagctgcttctactcatcagttttgttgtttttcagtgaattcaagcccattgcatatgaatttttctaggagtggttgtttggtgaaaaggggttctttgttaagccctagagtttcagtttctactactggtaatgctaagattgatggagttgatgatcagttatctttgtcacctgatgagatcaaaccagctcgggtgagaccctttattcgtatttgcattgtgaacattttgcaaatttgcaacttgaaaaatttgagtttttgaagttgggatttttggaatttgaagttgtgttttaacatgcatttcacttgaaaaaagtttgaaatttgaagttttgtgatggaaagtcccaagaatcttgaaaatatttgaagatcagatttttgaattgatcaaatttcgtggccaaacagatatttgaatatatatttttttgaaagctactcccaggtcaaacgctagcttaagcctttatagacttcctatattgcttgtggatgggtgttaatttttttaaaaggacagtcattgataaatgcaattgttttctccattatgatgctctcatgacgaacatcctttcatcatctgagtgggtggttaagcagggtttactttgttaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="40537" stop="41949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40833" g_stop="41649" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E739284" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40833" e_stop="41649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCATGAAAAAAGCTTCCAATTCGCAAAACTAACTCCACCCCATCTCTCAAAATTCAATCTTTTTTCAATCTCTGTCCAAATCTTGATTATTAGATTAGTACTGATAATGTCTGTTGCAGCAATGGGCATAGTTTCAGGAGGCATTGGGTATCTTTCACAGTTGTTTACAAGTGATATAGCTGCTTCTACTCATCAGTTTTGTTGTTTTTCAGTGAATTCAAGCCCATTGCATATGAATTTTTCTAGGAGTGGTTGTTTGGTGAAAAGGGGTTCTTTGTTAAGCCCTAGAGTTTCAGTTTCTACTACTGGTAATGCTAAGATTGATGGAGTTGATGATCAGTTATCTTTGTCACCTGATGAGATCAAACCAGCTCGGGTGAGACCCTTTATTCGTATTTGCATTGTGAACATTTTGCAAATTTGCAACTTGAAAAATTTGAGTTTTTGAAGTTGGGATTTTTGGAATTTGAAGTTGTGTTTTAACATGCATTTCACTTGAAAAAAGTTTGAAATTTGAAGTTTTGTGATGGAAAGTCCCAAGAATCTTGAAAATATTTGAAGATCAGATTTTTGAATTGATCAAATTTCGTGGCCAAACAGATATTTGAATATATATTTTTTTGAAAGCTACTCCCAGGTCAAACGCTAGCTTAAGCCTTTATAGACTTCCTATATTGCTTGTGGATGGGTGTTAATTTTTTTAAAAGGACAGTCATTGATAAATGCAATTGTTTTCTCCATTATGATGCTCTCATGACGAACATCCTTTCATCATCTGAGTGGGTGGTTAAGCAGGGTTTACTTTGTTAATAAA</genome_strand>
        <mrna_strand>CATTCATGAAAAAAGCTTCCAATTCGCAAAACTAACTCCACCCCATCTCTCAAAATTCAATCTTTTTTCAATCTCTGTCCAAATCTTGATTATTAGATTAGTACTGATAATGTCTGTTGCAGCAATGGGCATAGTTTCAGGAGGCATTGGGTATCTTTCACAGTTGTTTACAAGTGATATAGCTGCTTCTACTCATCAGTTTTGTTGTTTTTCAGTGAATTCAAGCCCATTGCATATGAATTTTTCTAGGAGTGGTTGTTTGGTGAAAAGGGGTTCTTTGTTAAGCCCTAGAGTTTCAGTTTCTACTACTGGTAATGCTAAGATTGATGGAGTTGATGATCAGTTATCTTTGTCACCTGATGAGATCAAACCAGCTCGGGTGAGACCCTTTATTCGTATTTGCATTGTGAACATTTTGCAAATTTGCAACTTGAAAAATTTGAGTTTTTGAAGTTGGGATTTTTGGAATTTGAAGTTGTGTTTTAACATGCATTTCACTTGAAAAAAGTTTGAAATTTGAAGTTTTGTGATGGAAAGTCCCAAGAATCTTGAAAATATTTGAAGATCAGATTTTTGAATTGATCAAATTTCGTGGCCAAACAGATATTTGAATATATATTTTTTTGAAAGCTACTCCCAGGTCAAACGCTAGCTTAAGCCTTTATAGACTTCCTATATTGCTTGTGGATGGGTGTTAATTTTTTTAAAAGGACAGTCATTGATAAATGCAATTGTTTTCTCCATTATGATGCTCTCATGACGAACATCCTTTCATCATCTGAGTGGGTGGTTAAGCAGGGTTTACTTTGTTAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746776" ref_strand="+" ref_description="SGN-E746776 [GI|47104506]">
      <seq>aaacagtcggcgcagtttcaaaattttatgtaaatcacaacagaagaagaagaagatgaagggaaaaacagagaatgatgaagaaggagcaaaaggggttgtgactcttgaagagctgaagaaaaaaatggctgattttgctaaagaaagagagtgggatcagtttcatacaccaagaaatctccttttagctatggtgggtgaagtgggagaattgtctgaaatatttcagtggaaaggtgaggtcccaagaggtctaccagattgggcagaaaaagagaagcagcatttaggtgaagagctatcagatgtattgctttatcttgtcaggctttcagatatttgtggcattgatctaggtaatgctgtactcagaaaactggagcttaatgccattaaataccctgttagtctttgcaaaggttcatcaaaaaagcttactcttttgagcaaaagtacaaccaccaccaccaccacctcaagcagtgaaaatggtgtgattaatgatggtgaatgatctttttttgatttagtaggtggtctatttataggtacttgcaatgacatctaatagtttttttttgtgctaaaaggggatgtagagacatatagtgtttgatttgaagtaacatgtatcaagtcaactaatttcttcctatttctagattgtttggttttttgctttatccatatcccctttgcctacaggttaatactgtagaagtttaagacaaatgtgttgagatttgtgtagtataatttttcgtcatttgaatttgtttgtatgattttgacttggcaaaaaatagttgttcttttagaagtggattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="53005" stop="50135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52705" g_stop="52510" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52509" i_stop="51089" i_length="1421">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51088" g_stop="50436" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="849" r_length="653" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E746776" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52705" e_stop="52510"/>
          <exon e_start="51088" e_stop="50436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGTCGGCGCAGTTTCAAAATTTTATGTAAATCACAACAGAAGAAGAAGAAGATGAAGGGAAAAACAGAGAATGATGAAGAAGGAGCAAAAGGGGTTGTGACTCTTGAAGAGCTGAAGAAAAAAATGGCTGATTTTGCTAAAGAAAGAGAGTGGGATCAGTTTCATACACCAAGAAATCTCCTTTTAGCTATGGTTTGTATATACCCATTACCCCTTTTGTAAAAAATGAAGTCTTTTTTGGCTTTCAAGTATGTGGGGTTTGGGTTTGGGTTGGTACATAGTGCAACTTTGTCTTCTGTGGGTTTTTTCTGTTGTCTACATTTATGGGTTTTGTTGTGTATCATGTTTTGAGCCATGAAAATGGTGTCTTTTTCTCTGTGTTTTATGATTTTCTGCTATTCTTGGTGATTTTGCTTTGTTTTCTATTTTTTTTAAGGAAAAGCTGGTGTTTTAATTTTTCTGCTCAATGGGTCAGTCTTTATGCTAGTCTGATTATTTTTTTTGTTTGTTTTGTTTTTCAAGATTGCTACTTTTGTTTATCTCTTAGTAAATGTGTTTTTCCTGTGGAATTAGCAAGATATACACATATACACTCAAACTTGGCTGCAGTTGTTGAAGAATAAGCACTTTAATATTGATAGTGAACGTTTAGATACCTCAACTTATCTTTATTGTGTAGGTTGAACACTCTCAACTTCAAAAAGACTATCTAAATACCTCTAAAATTTATGTATTAGGTGTTCATGACACACAATATCGACAAGTTCGAGCGTTTAGTTGTCACTTGAAATCAAGTTAGCTGATAGTTAGAAGTGTTACTTTTCGGCTGAGGTTAAGTTTAGAAAGTTGGAGTCTTGAAAGATAAAAGAACAATTCTTCTCTAAATTTTCCTTAGACAAAACCATGGAACAAAGAGTTCTGTTTGTTTCATAGAAACTAGAAATGTTTGCCAGTATTGGGTCATTGTGGAGAATTTGGATTTCCAATTTTGTGGAAACCCCAATAAAAAAAAAAGCTTTCTTTTGTTTCCCACCAAAGAAGGCATAGTGCTAATAATCTTTTATATGATTTTATGTTCCCCATTATGTAATTTTAGCTTTGCAGTACTTACATGGAAACTAGTGCAACACTTGCACTAATACTAAAAAATGGACATTATAATAAAAGGCTCATATCAATATTCTTCATTTTATAATGGGCATGTAAAGTTCATATTGAACAAATAAAATTGTACGGAGAGAGTAAATAATACTACTCCTAGTAGTGTAAAAACCACATGTAGTGTCAGTTGTATAGATAAATCATTGGATAAATTACTTGGTGAAGATTAAGAAAAGTGGTATTTTGCTTATTTTGACACACACTTCTAATACGTTATATATGCATTTGTGATGTCGCTCGGACTCTTCAGAAATGTTGGCAAGAGTGTGTCAGATGCTCCTATGCAGGTGTGAATAATTCTGGACTCTTGCCAGATACTCCTACGCAGGTGTGACAATAATTTCGGAGAGTTCGAGCAACATAGTGTATTTGCACAATATTGGCATAAAATGAGTTTATATGGTCAATGAAGATTCATATAGTCGATTCTAAAACTTTATTTTGAATACCAGGTGGGTGAAGTGGGAGAATTGTCTGAAATATTTCAGTGGAAAGGTGAGGTCCCAAGAGGTCTACCAGATTGGGCAGAAAAAGAGAAGCAGCATTTAGGTGAAGAGCTATCAGATGTATTGCTTTATCTTGTCAGGCTTTCAGATATTTGTGGCATTGATCTAGGTAATGCTGTACTCAGAAAACTGGAGCTTAATGCCATTAAATACCCTGTTAGTCTTTGCAAAGGTTCATCAAAAAAGCTTACTCTTTTGAGCAAAAGTACAACCACCACCACCACCACCTCAAGCAGTGAAAATGGTGTGATTAATGATGGTGAATGATCTTTTTTTGATTTAGTAGGTGGTCTATTTATAGGTACTTGCAATGACATCTAATAGTTTTTTTTTGTGCTAAAAGGGGATGTAGAGACATATAGTGTTTGATTTGAAGTAACATGTATCAAGTCAACTAATTTCTTCCTATTTCTAGATTGTTTGGTTTTTTGCTTTATCCATATCCCCTTTGCCTACAGGTTAATACTGTAGAAGTTTAAGACAAATGTGTTGAGATTTGTGTAGTATAATTTTTCGTCATTTGAATTTGTTTGTATGATTTTGACTTGGCAAAAAATAGTTGTTCTTTTAGAAGTGGATTTAAAAATATAAAAGACAAA</genome_strand>
        <mrna_strand>AAACAGTCGGCGCAGTTTCAAAATTTTATGTAAATCACAACAGAAGAAGAAGAAGATGAAGGGAAAAACAGAGAATGATGAAGAAGGAGCAAAAGGGGTTGTGACTCTTGAAGAGCTGAAGAAAAAAATGGCTGATTTTGCTAAAGAAAGAGAGTGGGATCAGTTTCATACACCAAGAAATCTCCTTTTAGCTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGAAGTGGGAGAATTGTCTGAAATATTTCAGTGGAAAGGTGAGGTCCCAAGAGGTCTACCAGATTGGGCAGAAAAAGAGAAGCAGCATTTAGGTGAAGAGCTATCAGATGTATTGCTTTATCTTGTCAGGCTTTCAGATATTTGTGGCATTGATCTAGGTAATGCTGTACTCAGAAAACTGGAGCTTAATGCCATTAAATACCCTGTTAGTCTTTGCAAAGGTTCATCAAAAAAGCTTACTCTTTTGAGCAAAAGTACAACCACCACCACCACCACCTCAAGCAGTGAAAATGGTGTGATTAATGATGGTGAATGATCTTTTTTTGATTTAGTAGGTGGTCTATTTATAGGTACTTGCAATGACATCTAATAGTTTTTTTTTGTGCTAAAAGGGGATGTAGAGACATATAGTGTTTGATTTGAAGTAACATGTATCAAGTCAACTAATTTCTTCCTATTTCTAGATTGTTTGGTTTTTTGCTTTATCCATATCCCCTTTGCCTACAGGTTAATACTGTAGAAGTTTAAGACAAATGTGTTGAGATTTGTGTAGTATAATTTTTCGTCATTTGAATTTGTTTGTATGATTTTGACTTGGCAAAAAATAGTTGTTCTTTTAGAAGTGGATTAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379938" ref_strand="+" ref_description="SGN-E379938 [TUS-1-B19](-)">
      <seq>gaagaagaagaagatgaagggaaaaccagagaatgatgaagaaggagcaaaaggggttgtgactcttgaagagctgaagaaaaaaatggctgattttgctaaagaaagagagtgggatcagtttcatacaccaagaaatctccttttagctatggtgggtgaagtgggagaattgtctgaaatatttcagtggaaaggtgaggtcccaagaggtctaccagattgggcagaaaaagagaagcagcatttaggtgaagagctatcagatgtattgctttatcttgtcaggctttcagatatttgtggcattgatctaggtaatgctgtactcagaaaactggagcttaatgccattaaataccctgttagtctttgcaaaggttcatcaaaaaagcttactcttttgagcaaaagtacaaccaccaccaccaccacctcaagcagtgaaaatggtgtgattaatgatggtgaatgatctttttttgatttagtaggtggtctatttataggtacttgcaatgacatctaatagtttttttttgtgctaaaaggggatgtagagacatatagtgtttgatttgaagtaacatgtatcaagtcaactaatttcttcctatttctagattgtttggttttttgctttatccatatcccctttgcctacaggttaatactgtagaagtttaagacaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="52963" stop="50247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52663" g_stop="52510" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52509" i_stop="51089" i_length="1421">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51088" g_stop="50547" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="696" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E379938" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52663" e_stop="52510"/>
          <exon e_start="51088" e_stop="50547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAGATGAAGGGAAAAACAGAGAATGATGAAGAAGGAGCAAAAGGGGTTGTGACTCTTGAAGAGCTGAAGAAAAAAATGGCTGATTTTGCTAAAGAAAGAGAGTGGGATCAGTTTCATACACCAAGAAATCTCCTTTTAGCTATGGTTTGTATATACCCATTACCCCTTTTGTAAAAAATGAAGTCTTTTTTGGCTTTCAAGTATGTGGGGTTTGGGTTTGGGTTGGTACATAGTGCAACTTTGTCTTCTGTGGGTTTTTTCTGTTGTCTACATTTATGGGTTTTGTTGTGTATCATGTTTTGAGCCATGAAAATGGTGTCTTTTTCTCTGTGTTTTATGATTTTCTGCTATTCTTGGTGATTTTGCTTTGTTTTCTATTTTTTTTAAGGAAAAGCTGGTGTTTTAATTTTTCTGCTCAATGGGTCAGTCTTTATGCTAGTCTGATTATTTTTTTTGTTTGTTTTGTTTTTCAAGATTGCTACTTTTGTTTATCTCTTAGTAAATGTGTTTTTCCTGTGGAATTAGCAAGATATACACATATACACTCAAACTTGGCTGCAGTTGTTGAAGAATAAGCACTTTAATATTGATAGTGAACGTTTAGATACCTCAACTTATCTTTATTGTGTAGGTTGAACACTCTCAACTTCAAAAAGACTATCTAAATACCTCTAAAATTTATGTATTAGGTGTTCATGACACACAATATCGACAAGTTCGAGCGTTTAGTTGTCACTTGAAATCAAGTTAGCTGATAGTTAGAAGTGTTACTTTTCGGCTGAGGTTAAGTTTAGAAAGTTGGAGTCTTGAAAGATAAAAGAACAATTCTTCTCTAAATTTTCCTTAGACAAAACCATGGAACAAAGAGTTCTGTTTGTTTCATAGAAACTAGAAATGTTTGCCAGTATTGGGTCATTGTGGAGAATTTGGATTTCCAATTTTGTGGAAACCCCAATAAAAAAAAAAGCTTTCTTTTGTTTCCCACCAAAGAAGGCATAGTGCTAATAATCTTTTATATGATTTTATGTTCCCCATTATGTAATTTTAGCTTTGCAGTACTTACATGGAAACTAGTGCAACACTTGCACTAATACTAAAAAATGGACATTATAATAAAAGGCTCATATCAATATTCTTCATTTTATAATGGGCATGTAAAGTTCATATTGAACAAATAAAATTGTACGGAGAGAGTAAATAATACTACTCCTAGTAGTGTAAAAACCACATGTAGTGTCAGTTGTATAGATAAATCATTGGATAAATTACTTGGTGAAGATTAAGAAAAGTGGTATTTTGCTTATTTTGACACACACTTCTAATACGTTATATATGCATTTGTGATGTCGCTCGGACTCTTCAGAAATGTTGGCAAGAGTGTGTCAGATGCTCCTATGCAGGTGTGAATAATTCTGGACTCTTGCCAGATACTCCTACGCAGGTGTGACAATAATTTCGGAGAGTTCGAGCAACATAGTGTATTTGCACAATATTGGCATAAAATGAGTTTATATGGTCAATGAAGATTCATATAGTCGATTCTAAAACTTTATTTTGAATACCAGGTGGGTGAAGTGGGAGAATTGTCTGAAATATTTCAGTGGAAAGGTGAGGTCCCAAGAGGTCTACCAGATTGGGCAGAAAAAGAGAAGCAGCATTTAGGTGAAGAGCTATCAGATGTATTGCTTTATCTTGTCAGGCTTTCAGATATTTGTGGCATTGATCTAGGTAATGCTGTACTCAGAAAACTGGAGCTTAATGCCATTAAATACCCTGTTAGTCTTTGCAAAGGTTCATCAAAAAAGCTTACTCTTTTGAGCAAAAGTACAACCACCACCACCACCACCTCAAGCAGTGAAAATGGTGTGATTAATGATGGTGAATGATCTTTTTTTGATTTAGTAGGTGGTCTATTTATAGGTACTTGCAATGACATCTAATAGTTTTTTTTTGTGCTAAAAGGGGATGTAGAGACATATAGTGTTTGATTTGAAGTAACATGTATCAAGTCAACTAATTTCTTCCTATTTCTAGATTGTTTGGTTTTTTGCTTTATCCATATCCCCTTTGCCTACAGGTTAATACTGTAGAAGTTTAAGACAAATGT</genome_strand>
        <mrna_strand>GAAGAAGAAGAAGATGAAGGGAAAACCAGAGAATGATGAAGAAGGAGCAAAAGGGGTTGTGACTCTTGAAGAGCTGAAGAAAAAAATGGCTGATTTTGCTAAAGAAAGAGAGTGGGATCAGTTTCATACACCAAGAAATCTCCTTTTAGCTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGAAGTGGGAGAATTGTCTGAAATATTTCAGTGGAAAGGTGAGGTCCCAAGAGGTCTACCAGATTGGGCAGAAAAAGAGAAGCAGCATTTAGGTGAAGAGCTATCAGATGTATTGCTTTATCTTGTCAGGCTTTCAGATATTTGTGGCATTGATCTAGGTAATGCTGTACTCAGAAAACTGGAGCTTAATGCCATTAAATACCCTGTTAGTCTTTGCAAAGGTTCATCAAAAAAGCTTACTCTTTTGAGCAAAAGTACAACCACCACCACCACCACCTCAAGCAGTGAAAATGGTGTGATTAATGATGGTGAATGATCTTTTTTTGATTTAGTAGGTGGTCTATTTATAGGTACTTGCAATGACATCTAATAGTTTTTTTTTGTGCTAAAAGGGGATGTAGAGACATATAGTGTTTGATTTGAAGTAACATGTATCAAGTCAACTAATTTCTTCCTATTTCTAGATTGTTTGGTTTTTTGCTTTATCCATATCCCCTTTGCCTACAGGTTAATACTGTAGAAGTTTAAGACAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379233" ref_strand="+" ref_description="SGN-E379233 [TUS-1-B19]">
      <seq>aacagtcggcgcagtttcaaaattttatgtaaatcacaacagaagaagaagaagatgaagggaaaaacagagaatgatgaagaaggagcaaaaggggttgtgactcttgaagagctgaagaaaaaaatggctgattttgctaaagaaagagagtgggatcagtttcatacaccaagaaatctccttttagctatggtgggtgaagtgggagaattgtctgaaatatttcagtggaaaggtgaggtcccaagaggtctaccagattgggcagaaaaagagaagcagcatttaggtgaagagctatcagatgtattgctttatcttgtcaggctttcagatatttgtggcattgatctaggtaatgctgtactcagaaaactggagcttaatgccattaaataccctgttagtctttgcaaaggttcatcaaaaaagcttactcttttgagcaaaagtacaaccaccaccaccaccacctcaagcagtgaaaatggtgtgattaatgatggtgaatgatctttttttgatttagtaggtggtctatttataggtacttgcaatgacatctaatagtttttttttgtgctaaaaggggatgtagagacatatagtgtttgatttgaagtaacatgtatcaagtcaactaatttcttcctatttctagattgtttggttttttgctttatccatatcccctttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="53004" stop="50282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52704" g_stop="52510" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52509" i_stop="51089" i_length="1421">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51088" g_stop="50582" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="702" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E379233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52704" e_stop="52510"/>
          <exon e_start="51088" e_stop="50582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTCGGCGCAGTTTCAAAATTTTATGTAAATCACAACAGAAGAAGAAGAAGATGAAGGGAAAAACAGAGAATGATGAAGAAGGAGCAAAAGGGGTTGTGACTCTTGAAGAGCTGAAGAAAAAAATGGCTGATTTTGCTAAAGAAAGAGAGTGGGATCAGTTTCATACACCAAGAAATCTCCTTTTAGCTATGGTTTGTATATACCCATTACCCCTTTTGTAAAAAATGAAGTCTTTTTTGGCTTTCAAGTATGTGGGGTTTGGGTTTGGGTTGGTACATAGTGCAACTTTGTCTTCTGTGGGTTTTTTCTGTTGTCTACATTTATGGGTTTTGTTGTGTATCATGTTTTGAGCCATGAAAATGGTGTCTTTTTCTCTGTGTTTTATGATTTTCTGCTATTCTTGGTGATTTTGCTTTGTTTTCTATTTTTTTTAAGGAAAAGCTGGTGTTTTAATTTTTCTGCTCAATGGGTCAGTCTTTATGCTAGTCTGATTATTTTTTTTGTTTGTTTTGTTTTTCAAGATTGCTACTTTTGTTTATCTCTTAGTAAATGTGTTTTTCCTGTGGAATTAGCAAGATATACACATATACACTCAAACTTGGCTGCAGTTGTTGAAGAATAAGCACTTTAATATTGATAGTGAACGTTTAGATACCTCAACTTATCTTTATTGTGTAGGTTGAACACTCTCAACTTCAAAAAGACTATCTAAATACCTCTAAAATTTATGTATTAGGTGTTCATGACACACAATATCGACAAGTTCGAGCGTTTAGTTGTCACTTGAAATCAAGTTAGCTGATAGTTAGAAGTGTTACTTTTCGGCTGAGGTTAAGTTTAGAAAGTTGGAGTCTTGAAAGATAAAAGAACAATTCTTCTCTAAATTTTCCTTAGACAAAACCATGGAACAAAGAGTTCTGTTTGTTTCATAGAAACTAGAAATGTTTGCCAGTATTGGGTCATTGTGGAGAATTTGGATTTCCAATTTTGTGGAAACCCCAATAAAAAAAAAAGCTTTCTTTTGTTTCCCACCAAAGAAGGCATAGTGCTAATAATCTTTTATATGATTTTATGTTCCCCATTATGTAATTTTAGCTTTGCAGTACTTACATGGAAACTAGTGCAACACTTGCACTAATACTAAAAAATGGACATTATAATAAAAGGCTCATATCAATATTCTTCATTTTATAATGGGCATGTAAAGTTCATATTGAACAAATAAAATTGTACGGAGAGAGTAAATAATACTACTCCTAGTAGTGTAAAAACCACATGTAGTGTCAGTTGTATAGATAAATCATTGGATAAATTACTTGGTGAAGATTAAGAAAAGTGGTATTTTGCTTATTTTGACACACACTTCTAATACGTTATATATGCATTTGTGATGTCGCTCGGACTCTTCAGAAATGTTGGCAAGAGTGTGTCAGATGCTCCTATGCAGGTGTGAATAATTCTGGACTCTTGCCAGATACTCCTACGCAGGTGTGACAATAATTTCGGAGAGTTCGAGCAACATAGTGTATTTGCACAATATTGGCATAAAATGAGTTTATATGGTCAATGAAGATTCATATAGTCGATTCTAAAACTTTATTTTGAATACCAGGTGGGTGAAGTGGGAGAATTGTCTGAAATATTTCAGTGGAAAGGTGAGGTCCCAAGAGGTCTACCAGATTGGGCAGAAAAAGAGAAGCAGCATTTAGGTGAAGAGCTATCAGATGTATTGCTTTATCTTGTCAGGCTTTCAGATATTTGTGGCATTGATCTAGGTAATGCTGTACTCAGAAAACTGGAGCTTAATGCCATTAAATACCCTGTTAGTCTTTGCAAAGGTTCATCAAAAAAGCTTACTCTTTTGAGCAAAAGTACAACCACCACCACCACCACCTCAAGCAGTGAAAATGGTGTGATTAATGATGGTGAATGATCTTTTTTTGATTTAGTAGGTGGTCTATTTATAGGTACTTGCAATGACATCTAATAGTTTTTTTTTGTGCTAAAAGGGGATGTAGAGACATATAGTGTTTGATTTGAAGTAACATGTATCAAGTCAACTAATTTCTTCCTATTTCTAGATTGTTTGGTTTTTTGCTTTATCCATATCCCCTTTGCC</genome_strand>
        <mrna_strand>AACAGTCGGCGCAGTTTCAAAATTTTATGTAAATCACAACAGAAGAAGAAGAAGATGAAGGGAAAAACAGAGAATGATGAAGAAGGAGCAAAAGGGGTTGTGACTCTTGAAGAGCTGAAGAAAAAAATGGCTGATTTTGCTAAAGAAAGAGAGTGGGATCAGTTTCATACACCAAGAAATCTCCTTTTAGCTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGAAGTGGGAGAATTGTCTGAAATATTTCAGTGGAAAGGTGAGGTCCCAAGAGGTCTACCAGATTGGGCAGAAAAAGAGAAGCAGCATTTAGGTGAAGAGCTATCAGATGTATTGCTTTATCTTGTCAGGCTTTCAGATATTTGTGGCATTGATCTAGGTAATGCTGTACTCAGAAAACTGGAGCTTAATGCCATTAAATACCCTGTTAGTCTTTGCAAAGGTTCATCAAAAAAGCTTACTCTTTTGAGCAAAAGTACAACCACCACCACCACCACCTCAAGCAGTGAAAATGGTGTGATTAATGATGGTGAATGATCTTTTTTTGATTTAGTAGGTGGTCTATTTATAGGTACTTGCAATGACATCTAATAGTTTTTTTTTGTGCTAAAAGGGGATGTAGAGACATATAGTGTTTGATTTGAAGTAACATGTATCAAGTCAACTAATTTCTTCCTATTTCTAGATTGTTTGGTTTTTTGCTTTATCCATATCCCCTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200696" ref_strand="+" ref_description="SGN-E200696 [cLEC-9-L21]">
      <seq>aacagtcggcgcagtttcaaaattttatgtaaatcacaacagaagaagaagaagatgaagggaaaaacagagaatgatgaagaaggagcaaaaggggttgtgactcttgaagagctgaagaaaaaaatggctgattttgctaaagaaagagagtgggatcagtttcatacaccaagaaatctccttttagctatggtgggtgaagtgggagaattgtctgaaatatttcagtggaaaggtgaggtcccaagaggtctaccagattgggcagaaaaagagaagcagcatttaggtgaagagctatcagatgtattgctttatcttgtcaggctttcagatatttgtggcattgatctaggtaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="53004" stop="50618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52704" g_stop="52510" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52509" i_stop="51089" i_length="1421">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51088" g_stop="50918" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="366" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E200696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52704" e_stop="52510"/>
          <exon e_start="51088" e_stop="50918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTCGGCGCAGTTTCAAAATTTTATGTAAATCACAACAGAAGAAGAAGAAGATGAAGGGAAAAACAGAGAATGATGAAGAAGGAGCAAAAGGGGTTGTGACTCTTGAAGAGCTGAAGAAAAAAATGGCTGATTTTGCTAAAGAAAGAGAGTGGGATCAGTTTCATACACCAAGAAATCTCCTTTTAGCTATGGTTTGTATATACCCATTACCCCTTTTGTAAAAAATGAAGTCTTTTTTGGCTTTCAAGTATGTGGGGTTTGGGTTTGGGTTGGTACATAGTGCAACTTTGTCTTCTGTGGGTTTTTTCTGTTGTCTACATTTATGGGTTTTGTTGTGTATCATGTTTTGAGCCATGAAAATGGTGTCTTTTTCTCTGTGTTTTATGATTTTCTGCTATTCTTGGTGATTTTGCTTTGTTTTCTATTTTTTTTAAGGAAAAGCTGGTGTTTTAATTTTTCTGCTCAATGGGTCAGTCTTTATGCTAGTCTGATTATTTTTTTTGTTTGTTTTGTTTTTCAAGATTGCTACTTTTGTTTATCTCTTAGTAAATGTGTTTTTCCTGTGGAATTAGCAAGATATACACATATACACTCAAACTTGGCTGCAGTTGTTGAAGAATAAGCACTTTAATATTGATAGTGAACGTTTAGATACCTCAACTTATCTTTATTGTGTAGGTTGAACACTCTCAACTTCAAAAAGACTATCTAAATACCTCTAAAATTTATGTATTAGGTGTTCATGACACACAATATCGACAAGTTCGAGCGTTTAGTTGTCACTTGAAATCAAGTTAGCTGATAGTTAGAAGTGTTACTTTTCGGCTGAGGTTAAGTTTAGAAAGTTGGAGTCTTGAAAGATAAAAGAACAATTCTTCTCTAAATTTTCCTTAGACAAAACCATGGAACAAAGAGTTCTGTTTGTTTCATAGAAACTAGAAATGTTTGCCAGTATTGGGTCATTGTGGAGAATTTGGATTTCCAATTTTGTGGAAACCCCAATAAAAAAAAAAGCTTTCTTTTGTTTCCCACCAAAGAAGGCATAGTGCTAATAATCTTTTATATGATTTTATGTTCCCCATTATGTAATTTTAGCTTTGCAGTACTTACATGGAAACTAGTGCAACACTTGCACTAATACTAAAAAATGGACATTATAATAAAAGGCTCATATCAATATTCTTCATTTTATAATGGGCATGTAAAGTTCATATTGAACAAATAAAATTGTACGGAGAGAGTAAATAATACTACTCCTAGTAGTGTAAAAACCACATGTAGTGTCAGTTGTATAGATAAATCATTGGATAAATTACTTGGTGAAGATTAAGAAAAGTGGTATTTTGCTTATTTTGACACACACTTCTAATACGTTATATATGCATTTGTGATGTCGCTCGGACTCTTCAGAAATGTTGGCAAGAGTGTGTCAGATGCTCCTATGCAGGTGTGAATAATTCTGGACTCTTGCCAGATACTCCTACGCAGGTGTGACAATAATTTCGGAGAGTTCGAGCAACATAGTGTATTTGCACAATATTGGCATAAAATGAGTTTATATGGTCAATGAAGATTCATATAGTCGATTCTAAAACTTTATTTTGAATACCAGGTGGGTGAAGTGGGAGAATTGTCTGAAATATTTCAGTGGAAAGGTGAGGTCCCAAGAGGTCTACCAGATTGGGCAGAAAAAGAGAAGCAGCATTTAGGTGAAGAGCTATCAGATGTATTGCTTTATCTTGTCAGGCTTTCAGATATTTGTGGCATTGATCTAGGTAATGCT</genome_strand>
        <mrna_strand>AACAGTCGGCGCAGTTTCAAAATTTTATGTAAATCACAACAGAAGAAGAAGAAGATGAAGGGAAAAACAGAGAATGATGAAGAAGGAGCAAAAGGGGTTGTGACTCTTGAAGAGCTGAAGAAAAAAATGGCTGATTTTGCTAAAGAAAGAGAGTGGGATCAGTTTCATACACCAAGAAATCTCCTTTTAGCTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGAAGTGGGAGAATTGTCTGAAATATTTCAGTGGAAAGGTGAGGTCCCAAGAGGTCTACCAGATTGGGCAGAAAAAGAGAAGCAGCATTTAGGTGAAGAGCTATCAGATGTATTGCTTTATCTTGTCAGGCTTTCAGATATTTGTGGCATTGATCTAGGTAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745325" ref_strand="+" ref_description="SGN-E745325 [GI|47105753]">
      <seq>ggaacgacaacaatgacgaaagagggaaagaatgtgaaaagaatcaaattgggttcagagggacttgaagtatctgttcaaggacttggttgtctgggtatgtccgatttctacggtccgcccaaacccgaacccgatatgattgaactaatacaccatgccattaactccggcataacatttttcgatacttcaaatagttatgggccttacactaatgaaatcctccttggcaaggctttgaagggaggaatgagggaacgagtcgagttagcaacaaaatttggtatacattttgcagatggaaagatagaagtacgtggagagccagaatatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgattgcatagacttgtactaccagcaccggattgatacacgcgtgcccattgaagtaacggttggagaacttaagaagctggttgaagagggtaaaataaaatatataggtctatcagaggcttcagcatcaacaattagaagagcacacgctgttcatccaataacagcagtacaattagaatggtcactatggtcgagagatgtagaggaagaaataatccctacttgcagagaactcggaattgggattgtagcatacagtccactaggccggggctttttgtcatccggtccaaagctggttgaggacttgacaaatgaagatttccgaaagcatctaccgaggtttcagggcgagaatcttgagcataacaaaaaattgtacgagaggatttgtgaattggcaactaagaagggatgcaccccgtctcaactggcgttggcgtgggtacatcaccaaggaaacgacgtgtgtcccatcccgggcaccactaagattgaaaatttcaatcagaacattggagctctgtccataaagctaacatcagaagacatggcagagcttgaatctattgcttcagctaatgcagtccagggtgataggtacggttcggctgcggcaacctacaaagattcagaaactcctcctatttcagcatggaaggctacataaatatagagttgttcttgtgttgtgcactgtatgtaatgaggtttcttttttcctgtttcaaaactattgtgccacttactgatggttcaaataataaaatcaattctctgtttgtggactttttcctatggacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="60632" stop="62823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60931" g_stop="61167" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61265" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61266" g_stop="61466" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="438" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61467" i_stop="61581" i_length="115">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61582" g_stop="61754" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="611" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61755" i_stop="61845" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61846" g_stop="61948" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="714" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61949" i_stop="62044" i_length="96">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62045" g_stop="62515" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="1185" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1187" polyA_stop="1205"/>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E745325" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1185</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60931" e_stop="61167"/>
          <exon e_start="61266" e_stop="61466"/>
          <exon e_start="61582" e_stop="61754"/>
          <exon e_start="61846" e_stop="61948"/>
          <exon e_start="62045" e_stop="62515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACGACAACAATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTTCTCTGTTTCCATTGATAACTCTTGTCAAATCTTTACGAACACTCAATGCTGCATAAAAAATTACACTATCAGCATGTTTTATTACTGTGCAATTCTTGATCTACTAGGTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACACGCTGTTCATCCAATAACAGCAGTACAATTAGAATGGTCACTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGCAGGTACTTTTTTTCTTCTTTCTGTTAGTTTTTTTTGTGTTTGAGGTTTATACCAATGTGAGATCCTGATTTTTCCCGTCTGTTAACTGTTCAGAGAACTCGGAATTGGGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCATCCGGTCCAAAGCTGGTTGAGGACTTGACAAATGAAGATTTCCGAAAGGTTCAGATTATATTTATTGTTTGTTTTGAGGTCCAATATGTTCACATTATGTTTAATTGCAGTGCATTTGACTTGAAAAGATCTCCAACTTTGCAGCATCTACCGAGGTTTCAGGGCGAGAATCTTGAGCATAACAAAAAATTGTACGAGAGGATTTGTGAATTGGCAACTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCGGGCACCACTAAGATTGAAAATTTCAATCAGAACATTGGAGCTCTGTCCATAAAGCTAACATCAGAAGACATGGCAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCAGCAACCTACAAAGATTCAGAAACTCCTCCTATTTCAGCATGGAAGGCTACATAAATATAGAGTTGTTCTTGTGTTGTGCACTGTATGTAATGAGGTTTCTTTTTTCCTGTTTCAAAACTATTGTGCCACTTACTGATGGTTCAAATAATAAAATCAATTCTCTGTTTGTGGACTTTTTCCTATGGA</genome_strand>
        <mrna_strand>GGAACGACAACAATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAG..................................................................................................GCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACG...................................................................................................................GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACACGCTGTTCATCCAATAACAGCAGTACAATTAGAATGGTCACTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGCAG...........................................................................................AGAACTCGGAATTGGGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCATCCGGTCCAAAGCTGGTTGAGGACTTGACAAATGAAGATTTCCGAAAG................................................................................................CATCTACCGAGGTTTCAGGGCGAGAATCTTGAGCATAACAAAAAATTGTACGAGAGGATTTGTGAATTGGCAACTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCGGGCACCACTAAGATTGAAAATTTCAATCAGAACATTGGAGCTCTGTCCATAAAGCTAACATCAGAAGACATGGCAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCGGCAACCTACAAAGATTCAGAAACTCCTCCTATTTCAGCATGGAAGGCTACATAAATATAGAGTTGTTCTTGTGTTGTGCACTGTATGTAATGAGGTTTCTTTTTTCCTGTTTCAAAACTATTGTGCCACTTACTGATGGTTCAAATAATAAAATCAATTCTCTGTTTGTGGACTTTTTCCTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309922" ref_strand="+" ref_description="SGN-E309922 [cLEZ-10-K24]">
      <seq>aacaatgacgaaagagggaaagaatgtgaaaagaatcaaattgggttcagagggacttgaagtatctgttcaaggacttggttgtctgggtatgtccgatttctacggtccgcccaaacccgaacccgatatgattgaactaatacaccatgccattaactccggcataacatttttcgatacttcaaatagttatgggccttacactaatgaaatcctccttggcaaggtatcaatttgtcaattcttttaagttatggttgtaccgaatcgaacatgaagtaataaggtgaaagtaaatactgagctgctaaaattctaatacaggctttgaagggaggaatgagggaacgagtcgagttagcaacaaaatttggtatacattttgcagatggaaagatagaagtacgtggagagccagaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="60639" stop="61665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60939" g_stop="61365" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E309922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60939" e_stop="61365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATG</genome_strand>
        <mrna_strand>AACAATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310889" ref_strand="+" ref_description="SGN-E310889 [cLEZ-17-I13]">
      <seq>aacaatgactaaagagggaaagaatgtgaaaagaatcaaattgggttcagagggacttgaagtatctgttcaaggacttggttgtctgggtatgtccgatttctacggtccgcccaaaccccaacccgatatgattgaactaatacaccatgccattaactccggcataacatttttcgatactctaaatagttatgggccttacactaatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="60639" stop="61454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60939" g_stop="61154" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E310889" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60939" e_stop="61154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAAT</genome_strand>
        <mrna_strand>AACAATGACTAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCCAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTCTAAATAGTTATGGGCCTTACACTAATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337480" ref_strand="+" ref_description="SGN-E337480 [cTOE-11-H17]">
      <seq>aatgacgaaagagggaaagaatgtgaaaagaatcaaattgggttcagagggacttgaagtatctgttcaaggacttggttgtctgggtatgtccgatttctacggtccgcccaaacccgaacccgatatgattgaactaatacaccatgccattaactccggcataacatttttcgatacttcaaatagttatgggccttacactaatgaaatcctccttggcaaggctttgaagggaggaatgagggaacgagtcgagttagcaacaaaatttggtatacattttgcagatggaaagatagaagtacgtggagagccagaatatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgattgcatagacttgtactaccagcaccggattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="60642" stop="61743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60942" g_stop="61167" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61265" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61266" g_stop="61443" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="404" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E337480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60942" e_stop="61167"/>
          <exon e_start="61266" e_stop="61443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATA</genome_strand>
        <mrna_strand>AATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAG..................................................................................................GCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201962" ref_strand="+" ref_description="SGN-E201962 [cLEC-7-C8]">
      <seq>aatgacgaaagagggaaagaatgtgaaaagaatcaaattgggttcagagggacttgaagtatctgttcaaggacttggttgtctgggtatgtccgatttctacggtccgcccaaacccgaacccgatatgattgaactaatacaccatgccattaactccggcataacatttttcgatacttcaaatagttatgggccttacactaatgaaatcctccttggcaaggctttgaagggaggaatgagggaacgagtcgagttagcaacaaaatttggtatacattttgcagatggaaagatagaagtacgtggagagccataatatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgattgcatagacttgtactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="60642" stop="61728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60942" g_stop="61167" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61265" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61266" g_stop="61428" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="389" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E201962" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60942" e_stop="61167"/>
          <exon e_start="61266" e_stop="61428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACC</genome_strand>
        <mrna_strand>AATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAG..................................................................................................GCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCATAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281897" ref_strand="+" ref_description="SGN-E281897 [cLES-2-J15]">
      <seq>gaaagagggaaagaatgtgaaaagaatcaaattgggttcagagggacttgaagtatctgttcaaggacttggttgtctgggtatgtccgatttctacggtccgcccaaacccgaacccgatatgattgaactaatacaccatgccattaactccggcataacatttttcgatacttcaaatagttatgggccttacactaatgaaatcctccttggcaaggctttgaagggaggaatgagggaacgagtcgagttagcaacaaaatttggtatacattttgcagatggaaagatagaagtacgtggagagccagaatatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgattgcatagacttgtactaccagcaccggattgatacacgcgtgcccattgaagtaacggttggagaacttaagaagctggttgaagagggtaaaataaaatatataggtctatcagaggcttcagcatcaacaattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="60648" stop="61961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60948" g_stop="61167" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61265" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61266" g_stop="61466" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="421" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61467" i_stop="61581" i_length="115">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61582" g_stop="61661" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="501" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E281897" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60948" e_stop="61167"/>
          <exon e_start="61266" e_stop="61466"/>
          <exon e_start="61582" e_stop="61661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTTCTCTGTTTCCATTGATAACTCTTGTCAAATCTTTACGAACACTCAATGCTGCATAAAAAATTACACTATCAGCATGTTTTATTACTGTGCAATTCTTGATCTACTAGGTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAG</genome_strand>
        <mrna_strand>GAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAG..................................................................................................GCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACG...................................................................................................................GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309060" ref_strand="+" ref_description="SGN-E309060 [cLEZ-1-I9]">
      <seq>aaagagggaaagaatgtgaaaagaatcaaattgggttcagagggacttgaagtatctgttcaaggacttggttgtctgggtatgtccgatttctacggtccgcccaaacccgaacccgatatgattgaactaatacaccatgccattaactccggcataacatttttcgatacttcaaatagttatgggccttacactaatgaaatcctccttggcaaggctttgaagggaggaatgagggaacgagtcgagttagcaacaaaatttggtatacattttgcagatggaaagatagaagtacgtggagagccagaatatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgattgcatagacttgtactaccagcaccggattgatacacgcgtgcccattgaagtaacggttggagaacttaagaagctggttgaagagggtaaaataaaatatataggtctatcagaggcttcagcatcaacaattagaagagcacacgctgttcatccaataacagcagtacaattagaatggtcactatggtcgagagatgtagaggaagaaataatccctacttgcagagaactcggaattgggattgtagcatacagtccactaggccggggctttttgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="60649" stop="62201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60949" g_stop="61167" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61265" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61266" g_stop="61466" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="420" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61467" i_stop="61581" i_length="115">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61582" g_stop="61754" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="593" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61755" i_stop="61845" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61846" g_stop="61901" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="649" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E309060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60949" e_stop="61167"/>
          <exon e_start="61266" e_stop="61466"/>
          <exon e_start="61582" e_stop="61754"/>
          <exon e_start="61846" e_stop="61901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTTCTCTGTTTCCATTGATAACTCTTGTCAAATCTTTACGAACACTCAATGCTGCATAAAAAATTACACTATCAGCATGTTTTATTACTGTGCAATTCTTGATCTACTAGGTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACACGCTGTTCATCCAATAACAGCAGTACAATTAGAATGGTCACTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGCAGGTACTTTTTTTCTTCTTTCTGTTAGTTTTTTTTGTGTTTGAGGTTTATACCAATGTGAGATCCTGATTTTTCCCGTCTGTTAACTGTTCAGAGAACTCGGAATTGGGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCAT</genome_strand>
        <mrna_strand>AAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAG..................................................................................................GCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACG...................................................................................................................GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACACGCTGTTCATCCAATAACAGCAGTACAATTAGAATGGTCACTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGCAG...........................................................................................AGAACTCGGAATTGGGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339709" ref_strand="+" ref_description="SGN-E339709 [cTOE-16-E14]">
      <seq>aaagagggaaagaatgtgaaaagaatcaaattgggttcagagggacttgaagtatctgttcaaggacttggttgtctgggtatgtccgatttctacggtccgcccaaacccgaacccgatatgattgaactaatacaccatgccattaactccggcataacatttttcgatacttcaaatagttatgggccttacactaatgaaatcctccttggcaaggctttgaagggaggaatgagggaacgagtcgagttagcaacaaaatttggtatacattttgcagatggaaagatagaagtacgtggagagccagaatatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgattgcatagacttgtactaccagcaccggattgatacacgcgtgcccattgaagtaacggttggtttctctgtttccattgataactcttgtcaaatctttacgaacactcaatgctgcataaaaaattacactatcagcatgttttattactgtgcaattcttgatctactaggttggagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="60649" stop="61892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60949" g_stop="61167" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61265" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61266" g_stop="61592" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="546" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E339709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60949" e_stop="61167"/>
          <exon e_start="61266" e_stop="61592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTTCTCTGTTTCCATTGATAACTCTTGTCAAATCTTTACGAACACTCAATGCTGCATAAAAAATTACACTATCAGCATGTTTTATTACTGTGCAATTCTTGATCTACTAGGTTGGAGAACT</genome_strand>
        <mrna_strand>AAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAG..................................................................................................GCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTTCTCTGTTTCCATTGATAACTCTTGTCAAATCTTTACGAACACTCAATGCTGCATAAAAAATTACACTATCAGCATGTTTTATTACTGTGCAATTCTTGATCTACTAGGTTGGAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200213" ref_strand="+" ref_description="SGN-E200213 [cLEC-12-G17]">
      <seq>ggaaagaatgtgaaaagaatcaaattgggttcagagggacttgaagtatctgttcaaggacttggttgtctgggtatgtccgatttctacggtccgcccaaacccgaacccgatatgattgaactaatacaccatgccattaactccggcataacatttttcgatacttcaaatagttatgggccttacactaatgaaatcctccttggcaaggctttgaagggaggaatgagggaacgagtcgagttagcaacaaaatttggtatacattttgcagatggaaagatagaagtacgtggagagccagaatatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgattgcatagacttgtactaccagcaccggattgatacacgcgtgcccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="60655" stop="61757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60955" g_stop="61167" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61265" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61266" g_stop="61457" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="405" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E200213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60955" e_stop="61167"/>
          <exon e_start="61266" e_stop="61457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATT</genome_strand>
        <mrna_strand>GGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAG..................................................................................................GCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310883" ref_strand="+" ref_description="SGN-E310883 [cLEZ-17-E11]">
      <seq>agaatgtgaaaagaatcaaattgggttcagagggacttgaagtatctgttcaaggacttggttgtctgggtatgtccgatttctacggtccgcccaaacccgaacccgatatgattgaactaatacaccatgccattaactccggcataacatttttcgatacttcaaatagttatgggccttacactaatgaaatcctccttggcaaggctttgaagggaggaatgagggaacgagtcgagttagcaacaaaatttggtatacattttgcagatggaaagatagaagtacgtggagagccagaatatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgattgcatagacttgtactaccagcaccggattgatacacgcgtgcccattgaagtaacggttggagaacttaagaagctggttgaagagggtaaaataaaatatataggtctatcagaggcttcagcatcaacaattagaagagcacacgctgttcatccaataacagcagtacaattagaatggtcactatggtcgagagatgtagaggaagaaataatccctacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="60659" stop="62052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60959" g_stop="61167" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61168" i_stop="61265" i_length="98">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61266" g_stop="61466" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="410" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61467" i_stop="61581" i_length="115">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61582" g_stop="61752" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="581" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E310883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60959" e_stop="61167"/>
          <exon e_start="61266" e_stop="61466"/>
          <exon e_start="61582" e_stop="61752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTTCTCTGTTTCCATTGATAACTCTTGTCAAATCTTTACGAACACTCAATGCTGCATAAAAAATTACACTATCAGCATGTTTTATTACTGTGCAATTCTTGATCTACTAGGTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACACGCTGTTCATCCAATAACAGCAGTACAATTAGAATGGTCACTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGC</genome_strand>
        <mrna_strand>AGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAG..................................................................................................GCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACG...................................................................................................................GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACACGCTGTTCATCCAATAACAGCAGTACAATTAGAATGGTCACTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E350332" ref_strand="+" ref_description="SGN-E350332 [cTOS-5-M19]">
      <seq>tggtcactatggtcgagagatgtagaggaagaaataatccctacttgcagagaactcggaattgggattgtagcatacagtccactaggccggggctttttgtcatccggtccaaagctggttgaggacttgacaaatgaagatttccgaaagcatctaccgaggtttcagggcgagaatcttgagcataacaaaaaattgtacgagaggatttgtgaattggcaactaagaagggatgcaccccgtctcaactggcgttggcgtgggtacatcaccaaggaaacgacgtgtgtcccatcccgggcaccactaagattgaaaatttcaatcagaacattggagctctgtccataaagctaacatcagaagacatggcagagcttgaatctattgcttcagctaatgcagtccagggtgataggtacggttcggctgcagcaacctacaaagattcagaaactcctcctatttcagcatggaaggctacataaatatagagttgttcttgtgttgtgcactgtatgtaatgaggtttcttttttcctgtttcaaaactattgtgccacttactgatggttcaaataataaaatcaattctctgtttgtggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="61405" stop="62801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61705" g_stop="61754" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61755" i_stop="61845" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61846" g_stop="61948" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="153" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61949" i_stop="62044" i_length="96">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62045" g_stop="62501" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="610" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E350332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61705" e_stop="61754"/>
          <exon e_start="61846" e_stop="61948"/>
          <exon e_start="62045" e_stop="62501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCACTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGCAGGTACTTTTTTTCTTCTTTCTGTTAGTTTTTTTTGTGTTTGAGGTTTATACCAATGTGAGATCCTGATTTTTCCCGTCTGTTAACTGTTCAGAGAACTCGGAATTGGGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCATCCGGTCCAAAGCTGGTTGAGGACTTGACAAATGAAGATTTCCGAAAGGTTCAGATTATATTTATTGTTTGTTTTGAGGTCCAATATGTTCACATTATGTTTAATTGCAGTGCATTTGACTTGAAAAGATCTCCAACTTTGCAGCATCTACCGAGGTTTCAGGGCGAGAATCTTGAGCATAACAAAAAATTGTACGAGAGGATTTGTGAATTGGCAACTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCGGGCACCACTAAGATTGAAAATTTCAATCAGAACATTGGAGCTCTGTCCATAAAGCTAACATCAGAAGACATGGCAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCAGCAACCTACAAAGATTCAGAAACTCCTCCTATTTCAGCATGGAAGGCTACATAAATATAGAGTTGTTCTTGTGTTGTGCACTGTATGTAATGAGGTTTCTTTTTTCCTGTTTCAAAACTATTGTGCCACTTACTGATGGTTCAAATAATAAAATCAATTCTCTGTTTGTGGA</genome_strand>
        <mrna_strand>TGGTCACTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGCAG...........................................................................................AGAACTCGGAATTGGGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCATCCGGTCCAAAGCTGGTTGAGGACTTGACAAATGAAGATTTCCGAAAG................................................................................................CATCTACCGAGGTTTCAGGGCGAGAATCTTGAGCATAACAAAAAATTGTACGAGAGGATTTGTGAATTGGCAACTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCGGGCACCACTAAGATTGAAAATTTCAATCAGAACATTGGAGCTCTGTCCATAAAGCTAACATCAGAAGACATGGCAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCAGCAACCTACAAAGATTCAGAAACTCCTCCTATTTCAGCATGGAAGGCTACATAAATATAGAGTTGTTCTTGTGTTGTGCACTGTATGTAATGAGGTTTCTTTTTTCCTGTTTCAAAACTATTGTGCCACTTACTGATGGTTCAAATAATAAAATCAATTCTCTGTTTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309061" ref_strand="+" ref_description="SGN-E309061 [cLEZ-1-I9](-)">
      <seq>aggaagaaataatccctacttgcagagaactcggaattgggattgtagcatacagtccactaggccggggctttttgtcatccggtccaaagctggttgaggacttgacaaatgaagatttccgaaagcatctaccgaggtttcagggcgagaatcttgagcataacaaaaaattgtacgagaggatttgtgaattggcaactaagaagggatgcaccccgtctcaactggcgttggcgtgggtacatcaccaaggaaacgacgtgtgtcccatcccgggcaccactaagattgaaaatttcaatcagaacattggagctctgtccataaagctaacatcagaagacatggcagagcttgaatctattgcttcagctaatgcagtccagggtgataggtacggttcggctgcagcaacctacaaagattcagaaactcctcctatttcagcatggaaggctacataaatatagagttgttcttgtgttgtgcactgtatgtaatgaggtttcttttttcctgtttcaaaactattgtgccacttactgatggttcaaataataaaatcaattctctgtttgtggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="61430" stop="62801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61730" g_stop="61754" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61755" i_stop="61845" i_length="91">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61846" g_stop="61948" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="128" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61949" i_stop="62044" i_length="96">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62045" g_stop="62501" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="585" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="586" polyA_stop="595"/>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E309061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61730" e_stop="61754"/>
          <exon e_start="61846" e_stop="61948"/>
          <exon e_start="62045" e_stop="62501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAAATAATCCCTACTTGCAGGTACTTTTTTTCTTCTTTCTGTTAGTTTTTTTTGTGTTTGAGGTTTATACCAATGTGAGATCCTGATTTTTCCCGTCTGTTAACTGTTCAGAGAACTCGGAATTGGGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCATCCGGTCCAAAGCTGGTTGAGGACTTGACAAATGAAGATTTCCGAAAGGTTCAGATTATATTTATTGTTTGTTTTGAGGTCCAATATGTTCACATTATGTTTAATTGCAGTGCATTTGACTTGAAAAGATCTCCAACTTTGCAGCATCTACCGAGGTTTCAGGGCGAGAATCTTGAGCATAACAAAAAATTGTACGAGAGGATTTGTGAATTGGCAACTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCGGGCACCACTAAGATTGAAAATTTCAATCAGAACATTGGAGCTCTGTCCATAAAGCTAACATCAGAAGACATGGCAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCAGCAACCTACAAAGATTCAGAAACTCCTCCTATTTCAGCATGGAAGGCTACATAAATATAGAGTTGTTCTTGTGTTGTGCACTGTATGTAATGAGGTTTCTTTTTTCCTGTTTCAAAACTATTGTGCCACTTACTGATGGTTCAAATAATAAAATCAATTCTCTGTTTGTGGA</genome_strand>
        <mrna_strand>AGGAAGAAATAATCCCTACTTGCAG...........................................................................................AGAACTCGGAATTGGGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCATCCGGTCCAAAGCTGGTTGAGGACTTGACAAATGAAGATTTCCGAAAG................................................................................................CATCTACCGAGGTTTCAGGGCGAGAATCTTGAGCATAACAAAAAATTGTACGAGAGGATTTGTGAATTGGCAACTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCGGGCACCACTAAGATTGAAAATTTCAATCAGAACATTGGAGCTCTGTCCATAAAGCTAACATCAGAAGACATGGCAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCAGCAACCTACAAAGATTCAGAAACTCCTCCTATTTCAGCATGGAAGGCTACATAAATATAGAGTTGTTCTTGTGTTGTGCACTGTATGTAATGAGGTTTCTTTTTTCCTGTTTCAAAACTATTGTGCCACTTACTGATGGTTCAAATAATAAAATCAATTCTCTGTTTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202661" ref_strand="-" ref_description="SGN-E202661 [cLEC-19-H9]">
      <seq>ggattgtagcatacagtccactaggccggggctttttgtcatccggtccaaagctggttgaggacttgacaaatgaagatttccgaaagcatctaccgaggtttcagggcgagaatcttgagcataacaaaaaattgtacgagaggatttgtgaattggcaactaagaagggatgcaccccgtctcaactggcgttggcgtgggtacatcaccaaggaaacgacgtgtgtcccatcccgggcaccactaagattgaaaatttcaatcagaacattggagctctgtccataaagctaacatcagaagacatggcagagcttgaatctattgcttcagctaatgcagtccagggtgataggtacggttcggctgcagcaacctacaaagattcagaaactcctcctatttcagcatggaaggctacataaatatagagttgttcttgtgttgtgcactgtatgtaatgaggtttcttttttcctgtttcaaaactattgtgccacttactgatggttcaaataataaaatcaattctctgtttgtggactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="61560" stop="62806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61860" g_stop="61948" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61949" i_stop="62044" i_length="96">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62045" g_stop="62506" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="551" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E202661" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202661" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61860" e_stop="61948"/>
          <exon e_start="62045" e_stop="62506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCATCCGGTCCAAAGCTGGTTGAGGACTTGACAAATGAAGATTTCCGAAAGGTTCAGATTATATTTATTGTTTGTTTTGAGGTCCAATATGTTCACATTATGTTTAATTGCAGTGCATTTGACTTGAAAAGATCTCCAACTTTGCAGCATCTACCGAGGTTTCAGGGCGAGAATCTTGAGCATAACAAAAAATTGTACGAGAGGATTTGTGAATTGGCAACTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCGGGCACCACTAAGATTGAAAATTTCAATCAGAACATTGGAGCTCTGTCCATAAAGCTAACATCAGAAGACATGGCAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCAGCAACCTACAAAGATTCAGAAACTCCTCCTATTTCAGCATGGAAGGCTACATAAATATAGAGTTGTTCTTGTGTTGTGCACTGTATGTAATGAGGTTTCTTTTTTCCTGTTTCAAAACTATTGTGCCACTTACTGATGGTTCAAATAATAAAATCAATTCTCTGTTTGTGGACTTTT</genome_strand>
        <mrna_strand>GGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCATCCGGTCCAAAGCTGGTTGAGGACTTGACAAATGAAGATTTCCGAAAG................................................................................................CATCTACCGAGGTTTCAGGGCGAGAATCTTGAGCATAACAAAAAATTGTACGAGAGGATTTGTGAATTGGCAACTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCGGGCACCACTAAGATTGAAAATTTCAATCAGAACATTGGAGCTCTGTCCATAAAGCTAACATCAGAAGACATGGCAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCAGCAACCTACAAAGATTCAGAAACTCCTCCTATTTCAGCATGGAAGGCTACATAAATATAGAGTTGTTCTTGTGTTGTGCACTGTATGTAATGAGGTTTCTTTTTTCCTGTTTCAAAACTATTGTGCCACTTACTGATGGTTCAAATAATAAAATCAATTCTCTGTTTGTGGACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689549" ref_strand="+" ref_description="SGN-E689549 [LH_Ea01D03]">
      <seq>cacttcttaagctgaatcacaacaatggcggcagagggaacccctttgggaagaatcaaattgggttcagagggtcttgaagtatctgctcaaggacttggttgtatgggtatgtccgctttttacgggcctcccaaacccgattccgatatgggccaactcatccaccacgccattaactccggcgtcacatttctcgatacttccgatgtatatgggccccacactaatgaaatcctcctcggcaaggctctgatgggcgggatgagggaacgagttgagttagcaacaaaatttgctgtaagttttgcagaaggaaaaatgcaagtgcgcggagagccagcctatgtaagggcagcatgtgaggctagcttaaagcgacttgatgttgactgcatagacttgtactaccagcaccggattgatacacgcgtgcccattgaagtgacggttggagaacttaagaagctggttgaagagggtaaaattaaatatataggtctatcggaggcttcagcatcaacaattagaagagcacatgcagttcatccaataacagcggttcaattagaatggtctctatggtcgagagatgtacaggaagacatagtccctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="62837" stop="66244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63132" g_stop="63380" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63381" i_stop="64970" i_length="1590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64971" g_stop="65171" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="450" r_length="201" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65172" i_stop="65776" i_length="605">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65777" g_stop="65944" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="618" r_length="168" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E689549" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63132" e_stop="63380"/>
          <exon e_start="64971" e_stop="65171"/>
          <exon e_start="65777" e_stop="65944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGCTTAAGCTGAATCACAACAATGGCGGCAGAGGGAACAAAAGTGGGAAGAATCAAATTGGGTTCAGAGGGTCTTGAAGTATCTGCTCAAGGACTTGGTTGTATGGGTATGTCCGCTTTTTACGGGCCTCCCAAACCCGATTCCGATATGGTCCAACTCATCCACCACGCCATTAACTCCGGCGTCACATTTCTCGATACTTCCGATGTATATGGGCCCCACACTAATGAAATCCTCCTCGGCAAGGTACTTAACTTCTTAATTTTTGGGATTTTCTCTGCCTTTTATGCATTGATTATTGTACGCTATGCTTGTTGATTTTGGAATCTTGGTGTTTGAGCTGGAATTGTTGTAACATATGCAAATGTGCTGGTTCATAAAGCTTAAAAGGCTTGCACTTTTCGCATCCTTGTAGCCTAGGGATCTGTTAAATGAGTCGAGAACATGAGGTTTAAGGTTCAGCTAAGACACCATGGTTATCAATAAAAAAGAAAAGACTCTACTTTTTGTTTTAGGTTGAATTGGGTTGGATTTGGTGCTATTCTTTACACGTTTTAGCTCCTTTGAGGTGGACCTTAGCAAGAAATGTTGTTCATGGTTCTTCAAAACATGTATATCTTTTGGAGGTGTTGACCTAAGTTGCTCGGACTCAGGTGCGGGTGTCCGATACGTGTGTGGATCTAAAGGTCGGATTCATCATGATCGATCTAATTTTTAAGATTCAGGAATATGGATCCATATGAGTGCGGGGACTCGCCTAAAAATAATTAGAATATTTAAAAAATAGAGCTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCAGGAAGGAGATCAAAGGAAAAGGAGGGATATCGAAATTTCTATATAAAAGGTATTCCATTTCCTTCAATTTCACCTTAGCTTTTGTATTGATTACAAAAATCATTAAAATTGTCCAGACTTTCCCCATCGATTTTGGTCAAAATACCCAAAATCGGTTGACCGAATCGGACACAGATCCCTCACTTTCACCCATGCGGCACCAAAAGTGAAGAGTCTGAGCAACTTAGGTGTTGAGAAAGGCGAATTCAAAATTTGAAACTTAATGGGTTCGCACCAAAATTTTATCATTTGCCGTCTAATTTAGTGGTTCAAAAATCTATTACTTGTACTAATTTATTGAGCTTTTTAACGCATATAGATGGTCTAAGCCAAAGCTATTGGGTTCGGATGAGTCCATAGGTTCTTTACTAGGTCCTCCCTGGGTGTTCGGGATGGTTTTCCCTGGGTGCTTGAAATTTGAAGGTTCCAATGAAGTCAGTGCTAGTATGCAGAGTTTATCTTTACTTGTAATAGCTAGTTCCAACAATTTCATTCTTAATATGCTAAATAATCTGATTATTTAGATGCTAAAATCTATCGAGGTCAGGATAAGGGCAAATGTAGCGAGAATCGAAGTGAAATGACAGAAAACGGAAAGCTCAGAGACAGAATTGTTTTATTGTTGAACCACTGTCCAGTCGAAAAAGAAAAGAAACCTCTTGTCGATACAAAGTCAGCCAAGTCTAAGAACAAGAATACAAGTAATGAAAGAAAGAGCTTTAGTGAGTGTTATGTAGTAGTTGCAGTGAATAATTGATGATTGATGTCCTTGTTTGTAGGGATGAGGCTCCTTTTACAGGGTAAAGAAGAGGGTCTCTATGTAATTTTTTAATTCTTTTTTCAAATGATGAGAGTCATGGTCAGTTGCTAAGAGCGTGGCTGTCGGTTCTTGGGTTGGTTGAGAGTCTGTTGGTCCTCAAGGTTATATGATAATCAATGATCATTGTATTTATGCAGGCTCTGATGGGCGGGATGAGGGAACGAGTTGAGTTAGCAACAAAATTTGCTGTAAGTTTTGCAGAAGGAAAAATGCAAGTGCGCGGAGAGCCAGCCTATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTCTCTATATCACAACTCTATAAAATGAATGTTACGAACATTTTCCTATCCATGATGTTAAATGATTGACTTGTTTGGATACAATTCCTATCCATGATTTTAAATGATTGACTTGTTTGGATACAATATATATTTTACAAACACTAAATGGCTTCAGTTCTGATCAACATACGCAATAATTTTGGGGTCGATCTAGTTGTTGAAAGCCAGTCTCTGTATATGTTTATGGTACAATCGCCGCGATTATAATCCAAATGGCTTTCTACACAGACAAAAAAAGGAGAAGAATTGATCCTCCAGAGATGGGAAGAAGCAATATGAAGTTAAGACAAAATTAGATGCAACTGCACTCTAATTTAGACTTTTCCGACTTCTAGTTTACATCTCTAAGCTTGATGAACCATTAAAAGAATTTAAAATGAGAAGCCGTTACCTCTGATATAATGCATGGGTAACCTTTAGAGAGTATTGGCATAGACCAATACATTTCAGCCGCGCACCAATTAAGTGAAGTGCTTATATTGTTTAATTTTTTCCCATCTTTGTTCAAATGGTTAATGATCATCATTTTTTTCCCCTTTGAATGTCTTGTTTTACTAGGTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTATGGTCAAGAGATGTAGAGGAAGACATAGTCCCTACT</genome_strand>
        <mrna_strand>CACTTCTTAAGCTGAATCACAACAATGGCGGCAGAGGGAACCCCTTTGGGAAGAATCAAATTGGGTTCAGAGGGTCTTGAAGTATCTGCTCAAGGACTTGGTTGTATGGGTATGTCCGCTTTTTACGGGCCTCCCAAACCCGATTCCGATATGGGCCAACTCATCCACCACGCCATTAACTCCGGCGTCACATTTCTCGATACTTCCGATGTATATGGGCCCCACACTAATGAAATCCTCCTCGGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGGGCGGGATGAGGGAACGAGTTGAGTTAGCAACAAAATTTGCTGTAAGTTTTGCAGAAGGAAAAATGCAAGTGCGCGGAGAGCCAGCCTATGTAAGGGCAGCATGTGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTGACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCGGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTATGGTCGAGAGATGTACAGGAAGACATAGTCCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548993" ref_strand="+" ref_description="SGN-E548993 [TUS-66-F2]">
      <seq>caacaatggcggcagagggaacaaaagtgggaagaatcaaattgggttcagagggtcttgaagtatctgctcaaggacttggttgtatgggtatgtccgctttttacgggcctcccaaacccgattccgatatggtccaactcatccaccacgccattaactccggcgtcacatttctcgatacttccgatgtatatgggccccacactaatgaaatcctcctcggcaaggctctgatgggcgggatgagggaacgagttgagttagcaacaaaatttgctgtaagttttgcagaaggaaaaatgcaagtgcgcggagagccagcctatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgactgcatagacttgtactaccagcaccggattgatacacgcgtgcccattgaagtaacggttggagaacttaagaagctggttgaagagggtaaaattaaatatataggtctatcagaggcttcagcatcaacaattagaagagcacatgcagttcatccaataacagcggttcaattagaatggtctctatggtcaagagatgtagaggaagacatagtccctacttgcagagaacttggaatcgggattgtagcatacagtccactagggcgtggctttttatcatccggtccaaagctgcttgaggactgctcaaatgaagatttccgaaagtatctaccgaggttccagggcgagaatcttgagcacaacaaaaaactgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="62851" stop="66605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63151" g_stop="63380" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63381" i_stop="64970" i_length="1590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64971" g_stop="65171" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="431" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65172" i_stop="65776" i_length="605">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65777" g_stop="65949" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="604" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65950" i_stop="66034" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66035" g_stop="66137" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="707" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66138" i_stop="66253" i_length="116">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66254" g_stop="66305" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="759" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E548993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63151" e_stop="63380"/>
          <exon e_start="64971" e_stop="65171"/>
          <exon e_start="65777" e_stop="65949"/>
          <exon e_start="66035" e_stop="66137"/>
          <exon e_start="66254" e_stop="66305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAATGGCGGCAGAGGGAACAAAAGTGGGAAGAATCAAATTGGGTTCAGAGGGTCTTGAAGTATCTGCTCAAGGACTTGGTTGTATGGGTATGTCCGCTTTTTACGGGCCTCCCAAACCCGATTCCGATATGGTCCAACTCATCCACCACGCCATTAACTCCGGCGTCACATTTCTCGATACTTCCGATGTATATGGGCCCCACACTAATGAAATCCTCCTCGGCAAGGTACTTAACTTCTTAATTTTTGGGATTTTCTCTGCCTTTTATGCATTGATTATTGTACGCTATGCTTGTTGATTTTGGAATCTTGGTGTTTGAGCTGGAATTGTTGTAACATATGCAAATGTGCTGGTTCATAAAGCTTAAAAGGCTTGCACTTTTCGCATCCTTGTAGCCTAGGGATCTGTTAAATGAGTCGAGAACATGAGGTTTAAGGTTCAGCTAAGACACCATGGTTATCAATAAAAAAGAAAAGACTCTACTTTTTGTTTTAGGTTGAATTGGGTTGGATTTGGTGCTATTCTTTACACGTTTTAGCTCCTTTGAGGTGGACCTTAGCAAGAAATGTTGTTCATGGTTCTTCAAAACATGTATATCTTTTGGAGGTGTTGACCTAAGTTGCTCGGACTCAGGTGCGGGTGTCCGATACGTGTGTGGATCTAAAGGTCGGATTCATCATGATCGATCTAATTTTTAAGATTCAGGAATATGGATCCATATGAGTGCGGGGACTCGCCTAAAAATAATTAGAATATTTAAAAAATAGAGCTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCAGGAAGGAGATCAAAGGAAAAGGAGGGATATCGAAATTTCTATATAAAAGGTATTCCATTTCCTTCAATTTCACCTTAGCTTTTGTATTGATTACAAAAATCATTAAAATTGTCCAGACTTTCCCCATCGATTTTGGTCAAAATACCCAAAATCGGTTGACCGAATCGGACACAGATCCCTCACTTTCACCCATGCGGCACCAAAAGTGAAGAGTCTGAGCAACTTAGGTGTTGAGAAAGGCGAATTCAAAATTTGAAACTTAATGGGTTCGCACCAAAATTTTATCATTTGCCGTCTAATTTAGTGGTTCAAAAATCTATTACTTGTACTAATTTATTGAGCTTTTTAACGCATATAGATGGTCTAAGCCAAAGCTATTGGGTTCGGATGAGTCCATAGGTTCTTTACTAGGTCCTCCCTGGGTGTTCGGGATGGTTTTCCCTGGGTGCTTGAAATTTGAAGGTTCCAATGAAGTCAGTGCTAGTATGCAGAGTTTATCTTTACTTGTAATAGCTAGTTCCAACAATTTCATTCTTAATATGCTAAATAATCTGATTATTTAGATGCTAAAATCTATCGAGGTCAGGATAAGGGCAAATGTAGCGAGAATCGAAGTGAAATGACAGAAAACGGAAAGCTCAGAGACAGAATTGTTTTATTGTTGAACCACTGTCCAGTCGAAAAAGAAAAGAAACCTCTTGTCGATACAAAGTCAGCCAAGTCTAAGAACAAGAATACAAGTAATGAAAGAAAGAGCTTTAGTGAGTGTTATGTAGTAGTTGCAGTGAATAATTGATGATTGATGTCCTTGTTTGTAGGGATGAGGCTCCTTTTACAGGGTAAAGAAGAGGGTCTCTATGTAATTTTTTAATTCTTTTTTCAAATGATGAGAGTCATGGTCAGTTGCTAAGAGCGTGGCTGTCGGTTCTTGGGTTGGTTGAGAGTCTGTTGGTCCTCAAGGTTATATGATAATCAATGATCATTGTATTTATGCAGGCTCTGATGGGCGGGATGAGGGAACGAGTTGAGTTAGCAACAAAATTTGCTGTAAGTTTTGCAGAAGGAAAAATGCAAGTGCGCGGAGAGCCAGCCTATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTCTCTATATCACAACTCTATAAAATGAATGTTACGAACATTTTCCTATCCATGATGTTAAATGATTGACTTGTTTGGATACAATTCCTATCCATGATTTTAAATGATTGACTTGTTTGGATACAATATATATTTTACAAACACTAAATGGCTTCAGTTCTGATCAACATACGCAATAATTTTGGGGTCGATCTAGTTGTTGAAAGCCAGTCTCTGTATATGTTTATGGTACAATCGCCGCGATTATAATCCAAATGGCTTTCTACACAGACAAAAAAAGGAGAAGAATTGATCCTCCAGAGATGGGAAGAAGCAATATGAAGTTAAGACAAAATTAGATGCAACTGCACTCTAATTTAGACTTTTCCGACTTCTAGTTTACATCTCTAAGCTTGATGAACCATTAAAAGAATTTAAAATGAGAAGCCGTTACCTCTGATATAATGCATGGGTAACCTTTAGAGAGTATTGGCATAGACCAATACATTTCAGCCGCGCACCAATTAAGTGAAGTGCTTATATTGTTTAATTTTTTCCCATCTTTGTTCAAATGGTTAATGATCATCATTTTTTTCCCCTTTGAATGTCTTGTTTTACTAGGTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTATGGTCAAGAGATGTAGAGGAAGACATAGTCCCTACTTGCAGGTACTTTCTTTTTTCTGTTAATTTTTCGTGTTTGGCTCTATTGCAATTCGAGCTCCTGATGTACGCCTATGTGTGAACTGTTTAGAGAACTTGGAATCGGGATTGTAGCATACAGTCCACTAGGGCGTGGCTTTTTATCATCCGGTCCAAAGCTGCTTGAGGACTGCTCAAATGAAGATTTCCGAAAGGTTAGCTTGTGTTTATTGTTCGTCTTGGAGTTGTAGCATACTCGCATCATGTTTAATTTCAGTGCATTTGTGTTGTTAGTGTAATATGGGGCATGGTTTGATCTTCAATTTTGCAGTATCTACCGAGGTTCCAGGGCGAGAATCTTGAGCACAACAAAAAACTGTATG</genome_strand>
        <mrna_strand>CAACAATGGCGGCAGAGGGAACAAAAGTGGGAAGAATCAAATTGGGTTCAGAGGGTCTTGAAGTATCTGCTCAAGGACTTGGTTGTATGGGTATGTCCGCTTTTTACGGGCCTCCCAAACCCGATTCCGATATGGTCCAACTCATCCACCACGCCATTAACTCCGGCGTCACATTTCTCGATACTTCCGATGTATATGGGCCCCACACTAATGAAATCCTCCTCGGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGGGCGGGATGAGGGAACGAGTTGAGTTAGCAACAAAATTTGCTGTAAGTTTTGCAGAAGGAAAAATGCAAGTGCGCGGAGAGCCAGCCTATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTATGGTCAAGAGATGTAGAGGAAGACATAGTCCCTACTTGCAG.....................................................................................AGAACTTGGAATCGGGATTGTAGCATACAGTCCACTAGGGCGTGGCTTTTTATCATCCGGTCCAAAGCTGCTTGAGGACTGCTCAAATGAAGATTTCCGAAAG....................................................................................................................TATCTACCGAGGTTCCAGGGCGAGAATCTTGAGCACAACAAAAAACTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306804" ref_strand="+" ref_description="SGN-E306804 [cLEY-11-C10]">
      <seq>aacaatggcggcagagggaacaaaagtgggaagaatcaaattgggttcagagggtcttgaagtatctgctcaaggacttggttgtatgggtatgtccgctttttacgggcctcccaaacccgattccgatatggtccaactcatccaccacgccattaactccggcgtcacatttctcgatacttccgatgtatatgggccccacactaatgaaatcctcctcggcaaggctctgatgggcgggatgagggaacgagttgagttagcaacaaaatttgctgtaagttttgcagaaggaaaaatgcaagtgcgcggagagccagcctatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgactgcatagacttgtactaccagcaccggattgatacacgcgtgcccattgaagtaacggttggagaacttaagaagctggttgaagagggtaaaattaaatatataggtctatcagaggcttcagcatcaacaattagaagagcacatgcagttcatccaataacagcggttcaattagaatggtctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="62852" stop="66209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63152" g_stop="63380" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63381" i_stop="64970" i_length="1590">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64971" g_stop="65171" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="430" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65172" i_stop="65776" i_length="605">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65777" g_stop="65909" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="563" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E306804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63152" e_stop="63380"/>
          <exon e_start="64971" e_stop="65171"/>
          <exon e_start="65777" e_stop="65909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGCGGCAGAGGGAACAAAAGTGGGAAGAATCAAATTGGGTTCAGAGGGTCTTGAAGTATCTGCTCAAGGACTTGGTTGTATGGGTATGTCCGCTTTTTACGGGCCTCCCAAACCCGATTCCGATATGGTCCAACTCATCCACCACGCCATTAACTCCGGCGTCACATTTCTCGATACTTCCGATGTATATGGGCCCCACACTAATGAAATCCTCCTCGGCAAGGTACTTAACTTCTTAATTTTTGGGATTTTCTCTGCCTTTTATGCATTGATTATTGTACGCTATGCTTGTTGATTTTGGAATCTTGGTGTTTGAGCTGGAATTGTTGTAACATATGCAAATGTGCTGGTTCATAAAGCTTAAAAGGCTTGCACTTTTCGCATCCTTGTAGCCTAGGGATCTGTTAAATGAGTCGAGAACATGAGGTTTAAGGTTCAGCTAAGACACCATGGTTATCAATAAAAAAGAAAAGACTCTACTTTTTGTTTTAGGTTGAATTGGGTTGGATTTGGTGCTATTCTTTACACGTTTTAGCTCCTTTGAGGTGGACCTTAGCAAGAAATGTTGTTCATGGTTCTTCAAAACATGTATATCTTTTGGAGGTGTTGACCTAAGTTGCTCGGACTCAGGTGCGGGTGTCCGATACGTGTGTGGATCTAAAGGTCGGATTCATCATGATCGATCTAATTTTTAAGATTCAGGAATATGGATCCATATGAGTGCGGGGACTCGCCTAAAAATAATTAGAATATTTAAAAAATAGAGCTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCAGGAAGGAGATCAAAGGAAAAGGAGGGATATCGAAATTTCTATATAAAAGGTATTCCATTTCCTTCAATTTCACCTTAGCTTTTGTATTGATTACAAAAATCATTAAAATTGTCCAGACTTTCCCCATCGATTTTGGTCAAAATACCCAAAATCGGTTGACCGAATCGGACACAGATCCCTCACTTTCACCCATGCGGCACCAAAAGTGAAGAGTCTGAGCAACTTAGGTGTTGAGAAAGGCGAATTCAAAATTTGAAACTTAATGGGTTCGCACCAAAATTTTATCATTTGCCGTCTAATTTAGTGGTTCAAAAATCTATTACTTGTACTAATTTATTGAGCTTTTTAACGCATATAGATGGTCTAAGCCAAAGCTATTGGGTTCGGATGAGTCCATAGGTTCTTTACTAGGTCCTCCCTGGGTGTTCGGGATGGTTTTCCCTGGGTGCTTGAAATTTGAAGGTTCCAATGAAGTCAGTGCTAGTATGCAGAGTTTATCTTTACTTGTAATAGCTAGTTCCAACAATTTCATTCTTAATATGCTAAATAATCTGATTATTTAGATGCTAAAATCTATCGAGGTCAGGATAAGGGCAAATGTAGCGAGAATCGAAGTGAAATGACAGAAAACGGAAAGCTCAGAGACAGAATTGTTTTATTGTTGAACCACTGTCCAGTCGAAAAAGAAAAGAAACCTCTTGTCGATACAAAGTCAGCCAAGTCTAAGAACAAGAATACAAGTAATGAAAGAAAGAGCTTTAGTGAGTGTTATGTAGTAGTTGCAGTGAATAATTGATGATTGATGTCCTTGTTTGTAGGGATGAGGCTCCTTTTACAGGGTAAAGAAGAGGGTCTCTATGTAATTTTTTAATTCTTTTTTCAAATGATGAGAGTCATGGTCAGTTGCTAAGAGCGTGGCTGTCGGTTCTTGGGTTGGTTGAGAGTCTGTTGGTCCTCAAGGTTATATGATAATCAATGATCATTGTATTTATGCAGGCTCTGATGGGCGGGATGAGGGAACGAGTTGAGTTAGCAACAAAATTTGCTGTAAGTTTTGCAGAAGGAAAAATGCAAGTGCGCGGAGAGCCAGCCTATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTCTCTATATCACAACTCTATAAAATGAATGTTACGAACATTTTCCTATCCATGATGTTAAATGATTGACTTGTTTGGATACAATTCCTATCCATGATTTTAAATGATTGACTTGTTTGGATACAATATATATTTTACAAACACTAAATGGCTTCAGTTCTGATCAACATACGCAATAATTTTGGGGTCGATCTAGTTGTTGAAAGCCAGTCTCTGTATATGTTTATGGTACAATCGCCGCGATTATAATCCAAATGGCTTTCTACACAGACAAAAAAAGGAGAAGAATTGATCCTCCAGAGATGGGAAGAAGCAATATGAAGTTAAGACAAAATTAGATGCAACTGCACTCTAATTTAGACTTTTCCGACTTCTAGTTTACATCTCTAAGCTTGATGAACCATTAAAAGAATTTAAAATGAGAAGCCGTTACCTCTGATATAATGCATGGGTAACCTTTAGAGAGTATTGGCATAGACCAATACATTTCAGCCGCGCACCAATTAAGTGAAGTGCTTATATTGTTTAATTTTTTCCCATCTTTGTTCAAATGGTTAATGATCATCATTTTTTTCCCCTTTGAATGTCTTGTTTTACTAGGTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTAT</genome_strand>
        <mrna_strand>AACAATGGCGGCAGAGGGAACAAAAGTGGGAAGAATCAAATTGGGTTCAGAGGGTCTTGAAGTATCTGCTCAAGGACTTGGTTGTATGGGTATGTCCGCTTTTTACGGGCCTCCCAAACCCGATTCCGATATGGTCCAACTCATCCACCACGCCATTAACTCCGGCGTCACATTTCTCGATACTTCCGATGTATATGGGCCCCACACTAATGAAATCCTCCTCGGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGATGGGCGGGATGAGGGAACGAGTTGAGTTAGCAACAAAATTTGCTGTAAGTTTTGCAGAAGGAAAAATGCAAGTGCGCGGAGAGCCAGCCTATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734377" ref_strand="+" ref_description="SGN-E734377 [LB12CA09]">
      <seq>ctctgatgggcgggatgagggaacgagttgagttagcaacaaaatttgctgtaagttttgcagaaggaaaaatgcaagtgcgcggagagccagcctatgtaagggcagcatgcgaggctagcttaaagcgacttgatgttgactgcatagacttgtactaccagcaccggattgatacacgcgtgcccattgaagtaacggttggagaacttaagaagctggttgaagagggtaaaattaaatatataggtctatcagaggcttcagcatcaacaattagaagagcacatgcagttcatccaataacagcggttcaattagaatggtctctatggtcaagagatgtagaggaagacatagtccctacttgcagagaacttggaatcgggattgtagcatacagtccactagggcgtggctttttatcatccggtccaaagctgcttgaggactgctcaaatgaagatttccgaaagtatctaccgaggttccagggcgagaatcttgagcacaacaaaaaactgtatgagaggatttgtcaaattgcagctaagaagggatgcaccccgtctcaactggcgttggcgtgggtacatcaccaaggaaacgacgtgtgtcccattcctggcaccactaagattgaaaacttaaaccagaacattggagctctgtccataaagcttacttctgaagacatgacagagcttgaatctattgcttcagctaatgcagtccagggtgataggtacggttcggctgcggncacctacaaagattcagaaactccacccctttcagcatgggaggctacataaatataggctacgtgctgttgttttcaataataaattatgtctccaaacataatttgaacttgcaatttttaagtttgcacgcttaccgtcccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="64672" stop="66989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64972" g_stop="65171" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65172" i_stop="65776" i_length="605">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65777" g_stop="65949" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="373" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65950" i_stop="66034" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66035" g_stop="66137" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="476" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66138" i_stop="66253" i_length="116">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66254" g_stop="66690" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="913" r_length="437" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E734377" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64972" e_stop="65171"/>
          <exon e_start="65777" e_stop="65949"/>
          <exon e_start="66035" e_stop="66137"/>
          <exon e_start="66254" e_stop="66690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATGGGCGGGATGAGGGAACGAGTTGAGTTAGCAACAAAATTTGCTGTAAGTTTTGCAGAAGGAAAAATGCAAGTGCGCGGAGAGCCAGCCTATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTCTCTATATCACAACTCTATAAAATGAATGTTACGAACATTTTCCTATCCATGATGTTAAATGATTGACTTGTTTGGATACAATTCCTATCCATGATTTTAAATGATTGACTTGTTTGGATACAATATATATTTTACAAACACTAAATGGCTTCAGTTCTGATCAACATACGCAATAATTTTGGGGTCGATCTAGTTGTTGAAAGCCAGTCTCTGTATATGTTTATGGTACAATCGCCGCGATTATAATCCAAATGGCTTTCTACACAGACAAAAAAAGGAGAAGAATTGATCCTCCAGAGATGGGAAGAAGCAATATGAAGTTAAGACAAAATTAGATGCAACTGCACTCTAATTTAGACTTTTCCGACTTCTAGTTTACATCTCTAAGCTTGATGAACCATTAAAAGAATTTAAAATGAGAAGCCGTTACCTCTGATATAATGCATGGGTAACCTTTAGAGAGTATTGGCATAGACCAATACATTTCAGCCGCGCACCAATTAAGTGAAGTGCTTATATTGTTTAATTTTTTCCCATCTTTGTTCAAATGGTTAATGATCATCATTTTTTTCCCCTTTGAATGTCTTGTTTTACTAGGTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTATGGTCAAGAGATGTAGAGGAAGACATAGTCCCTACTTGCAGGTACTTTCTTTTTTCTGTTAATTTTTCGTGTTTGGCTCTATTGCAATTCGAGCTCCTGATGTACGCCTATGTGTGAACTGTTTAGAGAACTTGGAATCGGGATTGTAGCATACAGTCCACTAGGGCGTGGCTTTTTATCATCCGGTCCAAAGCTGCTTGAGGACTGCTCAAATGAAGATTTCCGAAAGGTTAGCTTGTGTTTATTGTTCGTCTTGGAGTTGTAGCATACTCGCATCATGTTTAATTTCAGTGCATTTGTGTTGTTAGTGTAATATGGGGCATGGTTTGATCTTCAATTTTGCAGTATCTACCGAGGTTCCAGGGCGAGAATCTTGAGCACAACAAAAAACTGTATGAGAGGATTTGTCAAATTGCAGCTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATTCCTGGCACCACTAAGATTGAAAACTTAAACCAGAACATTGGAGCTCTGTCCATAAAGCTTACTTCTGAAGACATGACAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCGGCAACCTACAAAGATTCAGAAACTCCACCCCTTTCAGCATGGAAGGCTACATAAATATAGGCTACGTGCTGTTGTTTCAAATAATAAATTATGTCTCCAAACATAATTTGAACTTGCAATTTTTAAGTTTGCACGCTTACCGTCCAATCAAT</genome_strand>
        <mrna_strand>CTCTGATGGGCGGGATGAGGGAACGAGTTGAGTTAGCAACAAAATTTGCTGTAAGTTTTGCAGAAGGAAAAATGCAAGTGCGCGGAGAGCCAGCCTATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTATGGTCAAGAGATGTAGAGGAAGACATAGTCCCTACTTGCAG.....................................................................................AGAACTTGGAATCGGGATTGTAGCATACAGTCCACTAGGGCGTGGCTTTTTATCATCCGGTCCAAAGCTGCTTGAGGACTGCTCAAATGAAGATTTCCGAAAG....................................................................................................................TATCTACCGAGGTTCCAGGGCGAGAATCTTGAGCACAACAAAAAACTGTATGAGAGGATTTGTCAAATTGCAGCTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATTCCTGGCACCACTAAGATTGAAAACTTAAACCAGAACATTGGAGCTCTGTCCATAAAGCTTACTTCTGAAGACATGACAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCGGNCACCTACAAAGATTCAGAAACTCCACCCCTTTCAGCATGGGAGGCTACATAAATATAGGCTACGTGCTGTTGTTTTCAATAATAAATTATGTCTCCAAACATAATTTGAACTTGCAATTTTTAAGTTTGCACGCTTACCGTCCCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693389" ref_strand="+" ref_description="SGN-E693389 [LH_Ea01D03](-)">
      <seq>gggcagcatgtgaggctagcttaaagcgacttgatgttgactgcatagacttgtactaccagcaccggattgatacacgcgtgcccattgaagtgacggttggagaacttaagaagctggttgaagagggtaaaattaaatatataggtctatcggaggcttcagcatcaacaattagaagagcacatgcagttcatccaataacagcggttcaattagaatggtctctatggtcgagagatgtagaggaagacatagtccctacttgcagagaacttggaatcgggattgtagcatacagtccactaggacgtggctttttatcatccggtccaaagctgcttgaggactgctcaaatgaagatttccgaaagtatctaccgaggttccagggcgagaatcttgagcataacaaaaaactgtatgagaggatttgtcaaattgcagctaagaagggatgcaccccgtctcaacttgcattggcgtgggtacatcaccaaggaaacgacgtgtgtcccattcctggcaccactaagattgaaaacttcaaccagaacattggagctctgtccataaagcttacttctgaagacatgacagagcttgaatctattgcttcagctaatccagtccagggtgataggtacggttcggctgcggctacctacaaagattcagaaactccacccctttcagcatggaaggctacataaatataggctactttctgtagggtcaaataataaattatgtctccaaacataatttcaaaatgggatttttaagtttgcacgcttaccattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="64774" stop="85943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65074" g_stop="65171" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65172" i_stop="65776" i_length="605">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65777" g_stop="65949" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="271" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65950" i_stop="66034" i_length="85">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.440" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66035" g_stop="66137" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="374" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66138" i_stop="66253" i_length="116">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66254" g_stop="66698" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="819" r_length="445" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E693389" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65074" e_stop="65171"/>
          <exon e_start="65777" e_stop="65949"/>
          <exon e_start="66035" e_stop="66137"/>
          <exon e_start="66254" e_stop="66698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTCTCTATATCACAACTCTATAAAATGAATGTTACGAACATTTTCCTATCCATGATGTTAAATGATTGACTTGTTTGGATACAATTCCTATCCATGATTTTAAATGATTGACTTGTTTGGATACAATATATATTTTACAAACACTAAATGGCTTCAGTTCTGATCAACATACGCAATAATTTTGGGGTCGATCTAGTTGTTGAAAGCCAGTCTCTGTATATGTTTATGGTACAATCGCCGCGATTATAATCCAAATGGCTTTCTACACAGACAAAAAAAGGAGAAGAATTGATCCTCCAGAGATGGGAAGAAGCAATATGAAGTTAAGACAAAATTAGATGCAACTGCACTCTAATTTAGACTTTTCCGACTTCTAGTTTACATCTCTAAGCTTGATGAACCATTAAAAGAATTTAAAATGAGAAGCCGTTACCTCTGATATAATGCATGGGTAACCTTTAGAGAGTATTGGCATAGACCAATACATTTCAGCCGCGCACCAATTAAGTGAAGTGCTTATATTGTTTAATTTTTTCCCATCTTTGTTCAAATGGTTAATGATCATCATTTTTTTCCCCTTTGAATGTCTTGTTTTACTAGGTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTATGGTCAAGAGATGTAGAGGAAGACATAGTCCCTACTTGCAGGTACTTTCTTTTTTCTGTTAATTTTTCGTGTTTGGCTCTATTGCAATTCGAGCTCCTGATGTACGCCTATGTGTGAACTGTTTAGAGAACTTGGAATCGGGATTGTAGCATACAGTCCACTAGGGCGTGGCTTTTTATCATCCGGTCCAAAGCTGCTTGAGGACTGCTCAAATGAAGATTTCCGAAAGGTTAGCTTGTGTTTATTGTTCGTCTTGGAGTTGTAGCATACTCGCATCATGTTTAATTTCAGTGCATTTGTGTTGTTAGTGTAATATGGGGCATGGTTTGATCTTCAATTTTGCAGTATCTACCGAGGTTCCAGGGCGAGAATCTTGAGCACAACAAAAAACTGTATGAGAGGATTTGTCAAATTGCAGCTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATTCCTGGCACCACTAAGATTGAAAACTTAAACCAGAACATTGGAGCTCTGTCCATAAAGCTTACTTCTGAAGACATGACAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCGGCAACCTACAAAGATTCAGAAACTCCACCCCTTTCAGCATGGAAGGCTACATAAATATAGGCTACGTGCTGTTGTTTCAAATAATAAATTATGTCTCCAAACATAATTTGAACTTGCAATTTTTAAGTTTGCACGCTTACCGTCCAATCAATCCCTCTTA</genome_strand>
        <mrna_strand>GGGCAGCATGTGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTGACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCGGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTATGGTCGAGAGATGTAGAGGAAGACATAGTCCCTACTTGCAG.....................................................................................AGAACTTGGAATCGGGATTGTAGCATACAGTCCACTAGGACGTGGCTTTTTATCATCCGGTCCAAAGCTGCTTGAGGACTGCTCAAATGAAGATTTCCGAAAG....................................................................................................................TATCTACCGAGGTTCCAGGGCGAGAATCTTGAGCATAACAAAAAACTGTATGAGAGGATTTGTCAAATTGCAGCTAAGAAGGGATGCACCCCGTCTCAACTTGCATTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATTCCTGGCACCACTAAGATTGAAAACTTCAACCAGAACATTGGAGCTCTGTCCATAAAGCTTACTTCTGAAGACATGACAGAGCTTGAATCTATTGCTTCAGCTAATCCAGTCCAGGGTGATAGGTACGGTTCGGCTGCGGCTACCTACAAAGATTCAGAAACTCCACCCCTTTCAGCATGGAAGGCTACATAAATATAGGCTACTTTCTGTAGGGTCAAATAATAAATTATGTCTCCAAACATAATTTCAAAATGGGATTTTTAAGTTTGCACGCTTACCATTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544138" ref_strand="+" ref_description="SGN-E544138 [TUS-66-F2](-)">
      <seq>tccaaagctgcttgaggactgctcaaatgaagatttccgaaagtatctaccgaggttccagggcgagaatcttgagcacaacaaaaaactgtatgagaggatttgtcaaattgcagctaagaagggatgcaccccgtctcaactggcgttggcgtgggtacatcaccaaggaaacgacgtgtgtcccattcctggcaccactaagattgaaaacttaaaccagaacattggagctctgtccataaagcttacttctgaagacatgacagagcttgaatctattgcttcagctaatgcagtccagggtgataggtacggttcggctgcggcaacctacaaagattcagaaactccacccctttcagcatggaaggctacataaatataggctacgtgctgttgtttcaaataataaattatgtctccaaacataatttgaacttgcaatttttaagtttgcacgcttaccgtccaatcaatccctctttccaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="65795" stop="67006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66095" g_stop="66137" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66138" i_stop="66253" i_length="116">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66254" g_stop="66709" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="498" r_length="455" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E544138" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66095" e_stop="66137"/>
          <exon e_start="66254" e_stop="66709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAGCTGCTTGAGGACTGCTCAAATGAAGATTTCCGAAAGGTTAGCTTGTGTTTATTGTTCGTCTTGGAGTTGTAGCATACTCGCATCATGTTTAATTTCAGTGCATTTGTGTTGTTAGTGTAATATGGGGCATGGTTTGATCTTCAATTTTGCAGTATCTACCGAGGTTCCAGGGCGAGAATCTTGAGCACAACAAAAAACTGTATGAGAGGATTTGTCAAATTGCAGCTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATTCCTGGCACCACTAAGATTGAAAACTTAAACCAGAACATTGGAGCTCTGTCCATAAAGCTTACTTCTGAAGACATGACAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCGGCAACCTACAAAGATTCAGAAACTCCACCCCTTTCAGCATGGAAGGCTACATAAATATAGGCTACGTGCTGTTGTTTCAAATAATAAATTATGTCTCCAAACATAATTTGAACTTGCAATTTTTAAGTTTGCACGCTTACCGTCCAATCAATCCCTCTTATCCAACAACTT</genome_strand>
        <mrna_strand>TCCAAAGCTGCTTGAGGACTGCTCAAATGAAGATTTCCGAAAG....................................................................................................................TATCTACCGAGGTTCCAGGGCGAGAATCTTGAGCACAACAAAAAACTGTATGAGAGGATTTGTCAAATTGCAGCTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATTCCTGGCACCACTAAGATTGAAAACTTAAACCAGAACATTGGAGCTCTGTCCATAAAGCTTACTTCTGAAGACATGACAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCGGCAACCTACAAAGATTCAGAAACTCCACCCCTTTCAGCATGGAAGGCTACATAAATATAGGCTACGTGCTGTTGTTTCAAATAATAAATTATGTCTCCAAACATAATTTGAACTTGCAATTTTTAAGTTTGCACGCTTACCGTCCAATCAATCCCTCTT-TCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365953" ref_strand="+" ref_description="SGN-E365953 [cLPT-11-C8]">
      <seq>cagagtgaagtaggctgaaacgacaacaatggcgacggaaggaacaaaagtgggaagaatgaaattgggttcagaggggcttcaagtatctgctcaaggacttggttgtatgggtatgtccgctttttacgggccgcccaaacccgaacccgatatgatcgaactaatccaccacgccattaactccggcgtcactcttctcgatacctccgatgtatatgggccttacaccaatgaaatcctcattggtaaagctttgaagggagggatgagagaacgggttgtattagcaacaaagtttggtattgttttaggagatgaaaagaaagcagaaggaaagagagaagtgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="66699" stop="68774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66999" g_stop="67251" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67252" i_stop="68375" i_length="1124">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68376" g_stop="68474" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="352" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E365953" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66999" e_stop="67251"/>
          <exon e_start="68376" e_stop="68474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTGAAATAGGCTGAAAGGACAACAATGGCGACGGAAGGAACAAAAGTGGGAAGAATGAAGTTGGGTTCAGAGGGGCTTCAAGTATCTGTTCAAGGACTTGGTTGTATGGGTATGTCCGCTTTTTACGGGCCGCCCAAACCCGAACCCGAAATGATCGAACTAATCCACCACGCCATTAACTCCGGCGTCACTCTTCTTGATAGCTCCGATGTATATGGGCCATACACCAACGAAATCCTCATTGGTAAAGTATGATGTTCAACCTTTTTTACCCCAAATGCTTAATTTTTTTTTGTTTATGCATTAGGATGGTTGTACGTAATTCTATGATTGTTGTACCTTTATTGGTTTTGGTAAAAGTATGTGATTGCTACTCGTCGTCCCAAGATGAGAACTTTACAGTTAAATTGTTACTAATAAATAAAGCTATACTATCTGTTTCAATTTGTTTGTCTTACTTTTCTTGTTAATCCGTTTTTAAAATTGCTTATATGTTTAGATCACGCAATTGAAGAACATTTTGATACATTCTACGTATCTTTAGTTTAACATCATAAGATTCAAAAGTTTTTCATTATTCTCTTAAATTTTGTGTAAGTGAAAACCAGGCAGACAAATTGAAATGGAGTATCATTTTTGGAACGGACTAAAAAAAGGAGTGTTACATCACAGGACGGAGGGAGTAAGTACTAAGTAGTAGTGCTAATTACTGGTGTTTGAGAAGGAACACTTTTTTATTTGTTTACATATGCAGAATATGATTGTTCTCAGAGTTTAAAGTCTTGCACTTTTCTTTTTTTGGGTTGGCGGCGGGGTTGTTATGAAACTTTGAGGTACTATTACATGTTTTCACCTGACAATGTGCTACCTTTCAGACTTTCAGATGCTTAAGCCTCGCGAGTTACACCTTAAGAAGAAGAATTTTCATGATTCTTCAAACCTGTATCATCATGCGCGATTTCTAATTTTACTATTTGAGCTTACCTTGTTTTTTTCCTGCAAAGTCGTTTTTTTCTTAATATAAAGTACACTGAAACAAAAGTGTAGTGAACTTGTATTTTCTTATAGAAGTGTTCAAGTTAACTTATGTGCACCTTGATTATTTCATCATGTAGTTGCTACCTTCCATTAGCACAAATATTGAGTAACTTTACAGACCTAGGCTGAGATAAATGAAATGAAATCATTTTGTATTTTATTTTTAATTTTTGTCTCCGCTGAGATTTGAATCGAACTTTATAAAGTTCGCATCGACTTCATCAACCATAAACCACACTCTTAAGCTTATTCATTCATCGCATAAGCAACTGAGAATTTTTAACCATTTTGCAATAATTGTTGCTTGCAATTCTGATTATTATGTATCTATGTAGGCTTTGAAGGGAGGGATGAGAGAACGGGTTGAATTAGCAACAAAGTTTGGTATTGTTTTAGGAGATGAAAAGAAAGCAGAAGGAAAGAGAGAAGTGCAT</genome_strand>
        <mrna_strand>CAGAGTGAAGTAGGCTGAAACGACAACAATGGCGACGGAAGGAACAAAAGTGGGAAGAATGAAATTGGGTTCAGAGGGGCTTCAAGTATCTGCTCAAGGACTTGGTTGTATGGGTATGTCCGCTTTTTACGGGCCGCCCAAACCCGAACCCGATATGATCGAACTAATCCACCACGCCATTAACTCCGGCGTCACTCTTCTCGATACCTCCGATGTATATGGGCCTTACACCAATGAAATCCTCATTGGTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGAAGGGAGGGATGAGAGAACGGGTTGTATTAGCAACAAAGTTTGGTATTGTTTTAGGAGATGAAAAGAAAGCAGAAGGAAAGAGAGAAGTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317049" ref_strand="+" ref_description="SGN-E317049 [cTOA-27-C18]">
      <seq>tttggtattgttttaggagatgaaaagaaagcagaaggattgagagaagtgcatggaaatccagcctatgtaaggtcagcgtgcgaggctagtttaaagcgacttgatgttgactgtatagacttgtactatcagcaccgaattgatacacgtgtgcccattgaagtcacggttggagaacttaagaagctggtcgaagaaggtaaaataaaatatataggtctatccgaggcttcagcatcaacaattagaagagcacatgctgttcatccaataacagcagtacaattagaatggtctctatggtcgagagatgtagaggaagaaataatccctacttgcagagaactcggaattgggattgtggcatacagtccactaggacggggctttttgtcttccggtccaaagctgcttgaggatttgtcaaatgaagactaccgaaagcatctgccaaggttccaggcggagaatcttgagcataacaaaaagctgtatgagcgaatttgtcaaatggcagctaagaagggatgcactccttctcaactagcgttggcttgggtacatcaccaaggaaacgacgtgtgtcccatccctggcaccactaagattgaaaacttcaaccagaacattggagctctgtctgtaaagttaacatcagaagacatggcagaacttgaatccattgcctcagctaacgcagtccagggtgatcgatatatacctggtatgagtactttcaaaaattcagaaacgccgcccctttcagcatggaaggctacatgatgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="68121" stop="70433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68421" g_stop="68591" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68592" i_stop="69081" i_length="490">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69082" g_stop="69254" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="344" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69255" i_stop="69339" i_length="85">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69340" g_stop="69442" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="447" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69443" i_stop="69788" i_length="346">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69789" g_stop="70133" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="792" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E317049" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68421" e_stop="68591"/>
          <exon e_start="69082" e_stop="69254"/>
          <exon e_start="69340" e_stop="69442"/>
          <exon e_start="69789" e_stop="70133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTATTGTTTTAGGAGATGAAAAGAAAGCAGAAGGAAAGAGAGAAGTGCATGGAAATCCAGCCTATGTAAGGTCAGCGTGCGAGGCTAGTTTAAAGCGACTTGATGTTGACTGTATAGACTTGTACTATCAGCACCGAATTGATACACGTGTGCCCATTGAAGTCACGGTTAGTTCTTTTTTTTCCATTTATGACTCTTTGAAGGTACTTATTATGTATTTTGGAAAATGATGTAATATTTGATCTTACTCGGAGGATGACTACTGAGGAAATAGTGTTGCTAAAATCTAATAAAATAATTACTGTATAGTGGTTATATTGTATCTACAAATGCTCTTGACTGTAATGCAAGCTTCTGGCTAGTATTCGAGTATATGTTTTTACTTATTATCTCAATGCAATATTTCGGAATTGATCTAGCACTTGTTAGCCACACTCTTTATATTGCTTAGACCAAAATCATTGCCCTTATAGTCCAAATCAGCAAGACAATTCCCTGTCTTTCTGCTTTATTGAAAAAGAAAGCAACAATAAAAGAAATGATCATCCAGAGACTGGAATCAAACAATATGAAGATGAACGGAAAAATAGATTAACTGCTCTCTTTTTCAGATTATTGTCAACATTTCTTATTCCCTTGAGATTCCTGTTTTACCAGGTTGGAGAACTTAAGAAGCTGGTCGAAGAAGGTAAAATAAAATATATAGGTCTATCCGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCTGTTCATCCAATAACAGCAGTACAATTAGAATGGTCTCTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGCAGGTCTATTCTTCTTTCTGTTAGTTTTCGTGTTTGGGGTATACAGCAGTGTGAGATCCTGATGTTCTCCTATCTGTTAATCGTTCAGAGAACTCGGAATTGGGATTGTGGCATACAGTCCACTAGGACGGGGCTTTTTGTCTTCCGGTCCAAAGCTGCTTGAGGATTTGTCAAATGAAGACTACCGAAAGGTTTGCTTTGTTGTTCCGGATTTCAAACATATTGCTATCATGTTTAATTGCATTGATGTATTTCTGTTGCGAGTATATTTGCTTGTTTTATAGAAGAAAGAGTTTCGAATAATAAGCTATTTGATCTGGATGGTATTACTAGGGACAAAAGCTTTCAATCAAAAGTCATGAAGTATGAACTTAACATTGTCCCTTATATATTGCCATTTGTTTAATTGGTATACAATGCTCTCCTTTGTGCTGTTTAGTGTTACTATTTGTTTTCCTCTACTTGCTACGCGATATTGTGGGAGAGTAAAGTACGTCTTCAATTGGTTGGACTTAAAATTGATCCTCAATTTTGCAGCATCTGCCAAGGTTCCAGGCGGAGAATCTTGAGCATAACAAAAAGCTGTATGAGCGAATTTGTCAAATGGCAGCTAAGAAGGGATGCACTCCTTCTCAACTAGCGTTGGCTTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCTGGCACCACTAAGATTGAAAACTTCAACCAGAACATTGGAGCTCTGTCTGTAAAGTTAACATCAGAAGACATGGCAGAACTTGAATCCATTGCCTCAGCTAACGCAGTCCAGGGTGATCGATATATACCTGGTATGAGTACTTTCAAAAATTCAGAAACGCCGCCCCTTTCAGCATGGAAGGCTACATGATGTTGC</genome_strand>
        <mrna_strand>TTTGGTATTGTTTTAGGAGATGAAAAGAAAGCAGAAGGATTGAGAGAAGTGCATGGAAATCCAGCCTATGTAAGGTCAGCGTGCGAGGCTAGTTTAAAGCGACTTGATGTTGACTGTATAGACTTGTACTATCAGCACCGAATTGATACACGTGTGCCCATTGAAGTCACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGAACTTAAGAAGCTGGTCGAAGAAGGTAAAATAAAATATATAGGTCTATCCGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCTGTTCATCCAATAACAGCAGTACAATTAGAATGGTCTCTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGCAG.....................................................................................AGAACTCGGAATTGGGATTGTGGCATACAGTCCACTAGGACGGGGCTTTTTGTCTTCCGGTCCAAAGCTGCTTGAGGATTTGTCAAATGAAGACTACCGAAAG..........................................................................................................................................................................................................................................................................................................................................................CATCTGCCAAGGTTCCAGGCGGAGAATCTTGAGCATAACAAAAAGCTGTATGAGCGAATTTGTCAAATGGCAGCTAAGAAGGGATGCACTCCTTCTCAACTAGCGTTGGCTTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCTGGCACCACTAAGATTGAAAACTTCAACCAGAACATTGGAGCTCTGTCTGTAAAGTTAACATCAGAAGACATGGCAGAACTTGAATCCATTGCCTCAGCTAACGCAGTCCAGGGTGATCGATATATACCTGGTATGAGTACTTTCAAAAATTCAGAAACGCCGCCCCTTTCAGCATGGAAGGCTACATGATGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309339" ref_strand="+" ref_description="SGN-E309339 [cLEY-22-A19]">
      <seq>atgtgtgggaaattaatagagattctactttttgggaggatcccttaatgtttaagcctgagaggttttggcattcaaatttatacgtgcgaggacaagattttgaactgatcccatttggtgcgggtagaagaatgtgccctgccttgccacttgcattgcgaatgattccagtcatgttgggctcactcttgaattccttcaattggaaactcgaggcaggcattagaccagaagacctagacatggaggaaaaatttggtttggctttaatcaaagctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="82942" stop="83824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83242" g_stop="83524" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E309339" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83242" e_stop="83524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAGTGTTTAAACCTGAGAGGTTTTGGCATTCAAATTTAGACGTGCGAGGACAAGATTTTGAACTGATCCCATTTGGTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGTTGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACCTAGACATGGAGGAGAAATTTGGTTTGGCTTTAGTCAAAGCTCA</genome_strand>
        <mrna_strand>ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAATGTTTAAGCCTGAGAGGTTTTGGCATTCAAATTTATACGTGCGAGGACAAGATTTTGAACTGATCCCATTTGGTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGTTGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACCTAGACATGGAGGAAAAATTTGGTTTGGCTTTAATCAAAGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310265" ref_strand="+" ref_description="SGN-E310265 [cTOA-1-A4]">
      <seq>ctatggattactatacacttgtgtttgtgtcaattttagtgttggctaatatcatagcaaaaatatgtatcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87234" stop="88231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87534" g_stop="87931" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E310265" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87534" e_stop="87931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTC</genome_strand>
        <mrna_strand>CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTATCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305501" ref_strand="+" ref_description="SGN-E305501 [cLEX-15-J4]">
      <seq>gattactattcacttgtgtttgtgtcaattttagtgttggctaatatcatagcaaaaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttctaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcgacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87239" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87539" g_stop="88091" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E305501" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87539" e_stop="88091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCT</genome_strand>
        <mrna_strand>GATTACTATTCACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCTAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCGACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300235" ref_strand="+" ref_description="SGN-E300235 [cLEW-17-B11]">
      <seq>ttagtgttggctaatatcataccaaaaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaagatttggctgatccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87269" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87569" g_stop="88115" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E300235" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87569" e_stop="88115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTT</genome_strand>
        <mrna_strand>TTAGTGTTGGCTAATATCATACCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAAGATTTGGCTGATCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390674" ref_strand="+" ref_description="SGN-E390674 [TUS-46-F12]">
      <seq>aaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87294" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87594" g_stop="88167" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E390674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87594" e_stop="88167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGT</genome_strand>
        <mrna_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390673" ref_strand="+" ref_description="SGN-E390673 [TUS-46-F10]">
      <seq>aaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87294" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87594" g_stop="88123" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E390673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87594" e_stop="88123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCA</genome_strand>
        <mrna_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302472" ref_strand="+" ref_description="SGN-E302472 [cLEW-27-J2]">
      <seq>aaatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagccccaccaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgccttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaaccaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87294" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87594" g_stop="88116" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E302472" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87594" e_stop="88116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAG-CGCA-CAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACG-CTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAA-CAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTC</genome_strand>
        <mrna_strand>AAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCCCCACCAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACCAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294328" ref_strand="+" ref_description="SGN-E294328 [cLET-14-J22](-)">
      <seq>gacctatatccaaagcttcaccttgttgactacatttgtcacaataatcaatcaattgtttcaccttttgagaccttagatgttgatttgcatcaagcttattggaagataagaggttagtgttcaatattcttcgaagcgttcgccattgaggacaaacaggaagccatgccacagaaaatttgtaatggttgtgcgcttgaagagcattaggagcaaatctagatgaaaaggcttgatcttgagttttaaggacttgttttgcaatggttgatgaggaaatgactattgttgttatttgacctaactttaaactcataattggaccataattttttgcaagattggctagtgatatatgaggttttgcacctaacaactgaaggtttccaataattggccatggtgatggacctggtggaagttttttgcttcctttgctacatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="-" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="88343" stop="87295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88043" g_stop="87595" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="-" ref_id="SGN-E294328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88043" e_stop="87595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTATATCCAAAGCTTCACCTTGTTGACTACATTTGTCACAATAATCAATCAATTGTTTCACCTTTTGAGACCTTAGATGTTGATTTGCATCAAGCTTATTGGAAGATAAGAGGTTAGTGTTCAATATTCTTCGAAGCGTTCGCCATTGAGGACAAACAGGAAGCCATGCCACAGAAAATTTGTAATGGTTGTGCGCTTGAAGAGCATTAGGAGCAAATCTAGATGAAAAGGCTTGATCTTGAGTTTTAAGGACTTGTTTTGCAATGGTTGATGAGGAAATGACTATTGTTGTTATTTGACCTAACTTTAAACTCATAATTGGACCATAATTTTTTGCAAGATTGGCTAGTGATATATGAGGTTTTGCACCTAACAACTGAAGGTTTCCAATAATTGGCCATGGTGATGGACCTGGTGGAAGTTTTTTGCTTCCTTTGCTACATATT</genome_strand>
        <mrna_strand>GACCTATATCCAAAGCTTCACCTTGTTGACTACATTTGTCACAATAATCAATCAATTGTTTCACCTTTTGAGACCTTAGATGTTGATTTGCATCAAGCTTATTGGAAGATAAGAGGTTAGTGTTCAATATTCTTCGAAGCGTTCGCCATTGAGGACAAACAGGAAGCCATGCCACAGAAAATTTGTAATGGTTGTGCGCTTGAAGAGCATTAGGAGCAAATCTAGATGAAAAGGCTTGATCTTGAGTTTTAAGGACTTGTTTTGCAATGGTTGATGAGGAAATGACTATTGTTGTTATTTGACCTAACTTTAAACTCATAATTGGACCATAATTTTTTGCAAGATTGGCTAGTGATATATGAGGTTTTGCACCTAACAACTGAAGGTTTCCAATAATTGGCCATGGTGATGGACCTGGTGGAAGTTTTTTGCTTCCTTTGCTACATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E294327" ref_strand="+" ref_description="SGN-E294327 [cLET-14-J22]">
      <seq>aatatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87295" stop="88343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87595" g_stop="88043" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E294327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87595" e_stop="88043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTC</genome_strand>
        <mrna_strand>AATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291872" ref_strand="+" ref_description="SGN-E291872 [cLET-7-N15]">
      <seq>atatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaagatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87296" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87596" g_stop="88216" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E291872" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87596" e_stop="88216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGAT</genome_strand>
        <mrna_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAAGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291937" ref_strand="+" ref_description="SGN-E291937 [cLET-7-M17]">
      <seq>atatgtagcaaaggaagcaaaaaacttccaccaggtccatcaccatggccaattattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttagggnnntnncccnaaaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctattgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgcctgtcctcaatggcaaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87296" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87596" g_stop="88162" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E291937" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87596" e_stop="88162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTA-GG---T----C---AAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCT</genome_strand>
        <mrna_strand>ATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGGNNNTNNCCCNAAAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTATTGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGCCTGTCCTCAATGGCAAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301544" ref_strand="+" ref_description="SGN-E301544 [cLEW-23-O2]">
      <seq>ttattggaaaccttcagttgttaggtgcaaaacctcatatatcactagccaatcttgcaaaaaattatggtccaattatgagtttaaagttaggtcaaataacaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgatcttcaaggaataagacgtcgcgctatcattcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87348" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87648" g_stop="88253" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E301544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87648" e_stop="88253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTG</genome_strand>
        <mrna_strand>TTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335463" ref_strand="+" ref_description="SGN-E335463 [cTOE-2-C13]">
      <seq>acaacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgatcttcaaggaataagacgtcgcgctatcattcattttggtaagttgtttaaactttttgatgatttgatcaacgaacgattggaggaaaagaaaagaccaggattcatggaaaagagcgatgttcttgaaatatttctcaatattactgaaaaaaatcctcaagagattgatcataatcacatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87449" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87749" g_stop="88383" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E335463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87749" e_stop="88383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATCCTCAAGAGAT</genome_strand>
        <mrna_strand>ACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATCCTCAAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302969" ref_strand="+" ref_description="SGN-E302969 [cLEW-26-D4]">
      <seq>aacaatagtcatttcctcatcaaccattgcaaaacaagtccttaaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87451" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87751" g_stop="88186" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E302969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87751" e_stop="88186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTA</genome_strand>
        <mrna_strand>AACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278924" ref_strand="+" ref_description="SGN-E278924 [cLER-2-C12]">
      <seq>taaaactcaagatcaagccttttcatctagatttgctcctaatgctcttcaagcgcacaaccattacaaattttctgtggcatggcttcctgtttgtcctcaatggcgaacgcttcgaagaatattgaacactaacctcttatcttccaataagcttgatgcaaatcaacatctaaggtctcaaaaggtgaaacaattgattgattattgtgacaaatgtagtcaacaaggtgaagctttggatataggtcaagttgttttcaagactagtcttaatttgttgtcaaacacacttttctccaaggatttggctgatcctttttcagattcaaaggtagagttgaaggaagttatatggggtatcatggctgaggtagggaagcctaatttagtagattttttccccatacttgaaaaaattgatcttcaaggaataagacgtcgcgctatcattcattttggtaagttgtttaaactttttgatgatttgatcaacgaacgattggaggaaaagaaaagaccaggattcatggaaaagagcgatgttcttgaaatatttctcaatattactgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0037I08-8pDIj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09SLm0037I08.2" temp_strand="+" temp_description="C09SLm0037I08.2  EF647613.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647613| upload_account_name:spain (1 - 88383)">
        <position start="87493" stop="88383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87793" g_stop="88369" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0037I08.2" gen_strand="+" ref_id="SGN-E278924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0037I08.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87793" e_stop="88369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAA</genome_strand>
        <mrna_strand>TAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>84</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1260" PGL_stop="452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1260" e_stop="636"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="1260" e_stop="636" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1260" stop="674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1258" stop="653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1258" stop="670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1257" stop="638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1257" stop="639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1254" stop="636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1254" stop="640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1254" stop="663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1254" stop="670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1251" stop="712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1249" stop="837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1230" stop="643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1226" stop="638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1226" stop="695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1206" stop="675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1149" stop="651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAATGTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAAATTATGCTATCTCTA</gDNA_template>
            <first_frame> I  N  V  P  N  L  Q  W  Q  N  P  Q  K  F  S  H  Q  S  S  F  S  S  S  F  S  V  Y  F  L  H  Q  T  H  *  A  E  S  S  A  E  E  H  K  S  K  T  *  K  Q  I  R  K  F  K  I  *  V  S  T  V  S  K  N  T  T  E  I  C  G  I  S  M  V  L  *  V  L  Y  *  V  F  L  K  L  L  K  Q  K  N  K  L  F  L  V  L  N  I  I  *  K  S  Q  L  L  L  N  H  L  A  H  Q  N  C  S  M  L  L  L  L  L  K  L  G  R  R  R  R  N  C  L  R  F  L  L  L  L  H  R  L  Q  S  E  F  S  M  V  D  S  G  *  K  L  K  L  L  V  V  L  M  L  F  N  L  I  L  K  Y  F  N  L  *  P  F  Y  F  F  *  P  I  L  S  S  L  V  Y  Y  V  M  Q  *  S  M  N  D  I  C  I  S  M  L  L  *  I  N  Y  A  I  S  </first_frame>
            <second_frame>  L  M  S  P  I  S  N  G  K  I  H  K  N  S  L  I  N  P  H  S  L  L  H  F  Q  S  I  F  F  I  K  R  I  R  R  K  A  R  R  K  N  T  N  Q  K  R  E  N  K  S  G  N  S  R  S  R  *  V  L  C  R  R  T  Q  Q  R  F  A  A  Y  Q  W  C  F  E  F  F  I  E  F  F  S  S  C  *  S  R  K  T  S  C  F  W  C  *  I  L  S  K  N  L  S  Y  C  *  I  I  *  L  T  K  I  V  R  C  C  C  C  C  *  S  L  G  E  E  E  G  I  A  Y  V  F  S  F  S  F  T  G  Y  K  V  N  F  R  W  L  I  V  A  K  S  *  N  F  *  *  C  *  C  C  L  I  *  F  *  S  T  L  I  C  S  L  F  I  F  F  N  L  F  *  V  L  L  C  T  M  *  C  N  N  Q  *  M  T  Y  V  L  V  C  Y  Y  R  *  I  M  L  S  L </second_frame>
            <third_frame>   *  C  P  Q  S  P  M  A  K  S  T  K  I  L  S  S  I  L  I  L  F  F  I  F  S  L  F  S  S  S  N  A  L  G  G  K  L  G  G  R  T  Q  I  K  N  V  K  T  N  Q  E  I  Q  D  L  G  K  Y  C  V  E  E  H  N  R  D  L  R  H  I  N  G  A  L  S  S  L  L  S  F  S  Q  V  V  E  A  E  K  Q  V  V  S  G  V  K  Y  Y  L  K  I  S  A  I  V  K  S  S  S  S  P  K  L  F  D  A  V  V  V  V  K  A  W  E  K  K  K  E  L  L  T  F  S  P  S  P  S  P  A  T  K  *  I  F  D  G  *  *  W  L  K  V  K  T  S  S  S  A  N  V  V  *  S  N  F  E  V  L  *  F  V  A  F  L  F  F  L  T  Y  F  E  F  S  C  V  L  C  D  A  I  I  N  E  *  H  M  Y  *  Y  V  I  I  D  K  L  C  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1255" stop="836"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPQSPMAKSTKILSSILILFFIFSLFSSSNALGGKLGGRTQIKNVKTNQEIQDLGKYCVEEHNRDLRHINGALSSLLSFSQVVEAEKQVVSGVKYYLKISAIVKSSSSPKLFDAVVVVKAWEKKKELLTFSPSPSPATK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1260" e_stop="651"/>
            <exon e_start="465" e_stop="452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.933" e_score="0.997"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="1260" e_stop="651" e_length="610"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.933">
            <gDNA_intron_boundary i_start="650" i_stop="466" i_length="185"/>
          </intron>
          <exon e_serial="2" e_score="0.643">
            <gDNA_exon_boundary e_start="465" e_stop="452" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1260" stop="674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1258" stop="653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1258" stop="670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1254" stop="663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1254" stop="670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1251" stop="712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1249" stop="837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1226" stop="695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1206" stop="675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1149" stop="651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1109" stop="651"/>
              <exon start="465" stop="452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAATGTCCCCAATCTCCAATGGCAAAATCCACAAAAATTCTCTCATCAATCCTCATTCTCTTCTTCATTTTCAGTCTATTTTCTTCATCAAACGCATTAGGCGGAAAGCTCGGCGGAAGAACACAAATCAAAAACGTGAAAACAAATCAGGAAATTCAAGATCTAGGTAAGTACTGTGTCGAAGAACACAACAGAGATTTGCGGCATATCAATGGTGCTTTGAGTTCTTTATTGAGTTTTTCTCAAGTTGTTGAAGCAGAAAAACAAGTTGTTTCTGGTGTTAAATATTATCTAAAAATCTCAGCTATTGTTAAATCATCTAGCTCACCAAAATTGTTCGATGCTGTTGTTGTTGTTAAAGCTTGGGAGAAGAAGAAGGAATTGCTTACGTTTTCTCCTTCTCCTTCACCGGCTACAAAGTGAATTTTCGATGGTTGATAGTGGCTAAAAGTTAAAACTTCTAGTAGTGCTAATGTTGTTTAATCTAATTTTGAAGTACTTTAATTTGTAGCCTTTTTATTTTTTTTAACCTATTTTGAGTTCTCTTGTGTACTATGTGATGCAATAATCAATGAATGACATATGTATTAGTATGTTATTATAGATAA : AAAAATGTCAAAGA</gDNA_template>
            <first_frame> I  N  V  P  N  L  Q  W  Q  N  P  Q  K  F  S  H  Q  S  S  F  S  S  S  F  S  V  Y  F  L  H  Q  T  H  *  A  E  S  S  A  E  E  H  K  S  K  T  *  K  Q  I  R  K  F  K  I  *  V  S  T  V  S  K  N  T  T  E  I  C  G  I  S  M  V  L  *  V  L  Y  *  V  F  L  K  L  L  K  Q  K  N  K  L  F  L  V  L  N  I  I  *  K  S  Q  L  L  L  N  H  L  A  H  Q  N  C  S  M  L  L  L  L  L  K  L  G  R  R  R  R  N  C  L  R  F  L  L  L  L  H  R  L  Q  S  E  F  S  M  V  D  S  G  *  K  L  K  L  L  V  V  L  M  L  F  N  L  I  L  K  Y  F  N  L  *  P  F  Y  F  F  *  P  I  L  S  S  L  V  Y  Y  V  M  Q  *  S  M  N  D  I  C  I  S  M  L  L  *  I   : K  K  C  Q  R </first_frame>
            <second_frame>  L  M  S  P  I  S  N  G  K  I  H  K  N  S  L  I  N  P  H  S  L  L  H  F  Q  S  I  F  F  I  K  R  I  R  R  K  A  R  R  K  N  T  N  Q  K  R  E  N  K  S  G  N  S  R  S  R  *  V  L  C  R  R  T  Q  Q  R  F  A  A  Y  Q  W  C  F  E  F  F  I  E  F  F  S  S  C  *  S  R  K  T  S  C  F  W  C  *  I  L  S  K  N  L  S  Y  C  *  I  I  *  L  T  K  I  V  R  C  C  C  C  C  *  S  L  G  E  E  E  G  I  A  Y  V  F  S  F  S  F  T  G  Y  K  V  N  F  R  W  L  I  V  A  K  S  *  N  F  *  *  C  *  C  C  L  I  *  F  *  S  T  L  I  C  S  L  F  I  F  F  N  L  F  *  V  L  L  C  T  M  *  C  N  N  Q  *  M  T  Y  V  L  V  C  Y  Y  R  *  :  K  N  V  K   </second_frame>
            <third_frame>   *  C  P  Q  S  P  M  A  K  S  T  K  I  L  S  S  I  L  I  L  F  F  I  F  S  L  F  S  S  S  N  A  L  G  G  K  L  G  G  R  T  Q  I  K  N  V  K  T  N  Q  E  I  Q  D  L  G  K  Y  C  V  E  E  H  N  R  D  L  R  H  I  N  G  A  L  S  S  L  L  S  F  S  Q  V  V  E  A  E  K  Q  V  V  S  G  V  K  Y  Y  L  K  I  S  A  I  V  K  S  S  S  S  P  K  L  F  D  A  V  V  V  V  K  A  W  E  K  K  K  E  L  L  T  F  S  P  S  P  S  P  A  T  K  *  I  F  D  G  *  *  W  L  K  V  K  T  S  S  S  A  N  V  V  *  S  N  F  E  V  L  *  F  V  A  F  L  F  F  L  T  Y  F  E  F  S  C  V  L  C  D  A  I  I  N  E  *  H  M  Y  *  Y  V  I  I  D  K :   K  M  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1255" stop="836"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPQSPMAKSTKILSSILILFFIFSLFSSSNALGGKLGGRTQIKNVKTNQEIQDLGKYCVEEHNRDLRHINGALSSLLSFSQVVEAEKQVVSGVKYYLKISAIVKSSSSPKLFDAVVVVKAWEKKKELLTFSPSPSPATK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19589" PGL_stop="17958"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19589" e_stop="19527"/>
            <exon e_start="19420" e_stop="19355"/>
            <exon e_start="19250" e_stop="19182"/>
            <exon e_start="19071" e_stop="19000"/>
            <exon e_start="18894" e_stop="18682"/>
            <exon e_start="18540" e_stop="18453"/>
            <exon e_start="18296" e_stop="18098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.869"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19589" e_stop="19527" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.984">
            <gDNA_intron_boundary i_start="19526" i_stop="19421" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19420" e_stop="19355" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19354" i_stop="19251" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19250" e_stop="19182" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.929">
            <gDNA_intron_boundary i_start="19181" i_stop="19072" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19071" e_stop="19000" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.974">
            <gDNA_intron_boundary i_start="18999" i_stop="18895" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18894" e_stop="18682" e_length="213"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="18681" i_stop="18541" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18540" e_stop="18453" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18452" i_stop="18297" i_length="156"/>
          </intron>
          <exon e_serial="7" e_score="0.869">
            <gDNA_exon_boundary e_start="18296" e_stop="18098" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19589" stop="19527"/>
              <exon start="19420" stop="19355"/>
              <exon start="19250" stop="19182"/>
              <exon start="19071" stop="19000"/>
              <exon start="18894" stop="18738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19566" stop="19527"/>
              <exon start="19420" stop="19355"/>
              <exon start="19250" stop="19182"/>
              <exon start="19071" stop="19000"/>
              <exon start="18894" stop="18682"/>
              <exon start="18540" stop="18453"/>
              <exon start="18296" stop="18257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19185" stop="19182"/>
              <exon start="19071" stop="19000"/>
              <exon start="18894" stop="18682"/>
              <exon start="18540" stop="18453"/>
              <exon start="18296" stop="18098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTATATTCATGTGAGAGCTAGAAGGGGACAGGCCACAGATGCACATAGTCTAGCTGAAAGA : GTGAGAAGGGAGAAAATTAGTGAAAGAATGAAGCTTTTACAAGATCTTGTACCAGGCTGCAATAAG : GTGACTGGAAAAGCTGTAATGCTTGATGAGATTATTAACTATGTACAATCACTTCAACGTCAAGTTGAG : TTCCTTTCAATGAAATTAGCTACTGTGAATCCAAGAATGGACTTTAATATGGAAGCACTTCTTTCCAAGGAT : ATGTTTCAATCTAGGGGATCATTGGGACATAACATGTATCAATCAGAAACATCAACCCAAGCATTTCCTTATGGATTTCAATCTCAACCAAACCAAAATTATCATAAAGGAACAGAGTTTCCTTTCCAAATTAACTCATTGAATCCTAATTTGATCAGAAATTCAAGTATGCAATTGCCTCCTCTAGATGGTTTTGTTGAGCCTACCCCTCAG : GTCCCCACATTCTTTGAGGATGATCTCAATAGTGTTGTTCAAATGGGATTTGGACAAAATCAGAACCAAAGTTTTCCGGGTGTAGCAG : GCAATGTACCTAATTCTCAAATGAAAGTTGAACTATGACCCAAAAAAGCTCAGTAAAAATTGATGAATTTATTTGAGGCCCTAAGGCTTTGTACATAAAGAGAGGGAAAATTCGCGATTAAGACCTATTCAAAGCAAATATCGCGATTCAAGAAGAAAGAAGAAATTAAAGAGATATTTTTTTCTCTTAAAAAATTCTT</gDNA_template>
            <first_frame> D  Y  I  H  V  R  A  R  R  G  Q  A  T  D  A  H  S  L  A  E  R  :  V  R  R  E  K  I  S  E  R  M  K  L  L  Q  D  L  V  P  G  C  N  K  :  V  T  G  K  A  V  M  L  D  E  I  I  N  Y  V  Q  S  L  Q  R  Q  V  E  :  F  L  S  M  K  L  A  T  V  N  P  R  M  D  F  N  M  E  A  L  L  S  K  D  :  M  F  Q  S  R  G  S  L  G  H  N  M  Y  Q  S  E  T  S  T  Q  A  F  P  Y  G  F  Q  S  Q  P  N  Q  N  Y  H  K  G  T  E  F  P  F  Q  I  N  S  L  N  P  N  L  I  R  N  S  S  M  Q  L  P  P  L  D  G  F  V  E  P  T  P  Q  :  V  P  T  F  F  E  D  D  L  N  S  V  V  Q  M  G  F  G  Q  N  Q  N  Q  S  F  P  G  V  A   : G  N  V  P  N  S  Q  M  K  V  E  L  *  P  K  K  A  Q  *  K  L  M  N  L  F  E  A  L  R  L  C  T  *  R  E  G  K  F  A  I  K  T  Y  S  K  Q  I  S  R  F  K  K  K  E  E  I  K  E  I  F  F  S  L  K  K  F   </first_frame>
            <second_frame>  T  I  F  M  *  E  L  E  G  D  R  P  Q  M  H  I  V  *  L  K  E :   *  E  G  R  K  L  V  K  E  *  S  F  Y  K  I  L  Y  Q  A  A  I  R :   *  L  E  K  L  *  C  L  M  R  L  L  T  M  Y  N  H  F  N  V  K  L  S :   S  F  Q  *  N  *  L  L  *  I  Q  E  W  T  L  I  W  K  H  F  F  P  R  I :   C  F  N  L  G  D  H  W  D  I  T  C  I  N  Q  K  H  Q  P  K  H  F  L  M  D  F  N  L  N  Q  T  K  I  I  I  K  E  Q  S  F  L  S  K  L  T  H  *  I  L  I  *  S  E  I  Q  V  C  N  C  L  L  *  M  V  L  L  S  L  P  L  R :   S  P  H  S  L  R  M  I  S  I  V  L  F  K  W  D  L  D  K  I  R  T  K  V  F  R  V  *  Q  :  A  M  Y  L  I  L  K  *  K  L  N  Y  D  P  K  K  L  S  K  N  *  *  I  Y  L  R  P  *  G  F  V  H  K  E  R  E  N  S  R  L  R  P  I  Q  S  K  Y  R  D  S  R  R  K  K  K  L  K  R  Y  F  F  L  L  K  N  S  </second_frame>
            <third_frame>   L  Y  S  C  E  S  *  K  G  T  G  H  R  C  T  *  S  S  *  K   : S  E  K  G  E  N  *  *  K  N  E  A  F  T  R  S  C  T  R  L  Q  *   : G  D  W  K  S  C  N  A  *  *  D  Y  *  L  C  T  I  T  S  T  S  S  *   : V  P  F  N  E  I  S  Y  C  E  S  K  N  G  L  *  Y  G  S  T  S  F  Q  G   : Y  V  S  I  *  G  I  I  G  T  *  H  V  S  I  R  N  I  N  P  S  I  S  L  W  I  S  I  S  T  K  P  K  L  S  *  R  N  R  V  S  F  P  N  *  L  I  E  S  *  F  D  Q  K  F  K  Y  A  I  A  S  S  R  W  F  C  *  A  Y  P  S   : G  P  H  I  L  *  G  *  S  Q  *  C  C  S  N  G  I  W  T  K  S  E  P  K  F  S  G  C  S  R :   Q  C  T  *  F  S  N  E  S  *  T  M  T  Q  K  S  S  V  K  I  D  E  F  I  *  G  P  K  A  L  Y  I  K  R  G  K  I  R  D  *  D  L  F  K  A  N  I  A  I  Q  E  E  R  R  N  *  R  D  I  F  F  S  *  K  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19589" stop="19527"/>
                    <exon start="19420" stop="19355"/>
                    <exon start="19250" stop="19182"/>
                    <exon start="19071" stop="19000"/>
                    <exon start="18894" stop="18682"/>
                    <exon start="18540" stop="18453"/>
                    <exon start="18296" stop="18259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYIHVRARRGQATDAHSLAERVRREKISERMKLLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMEALLSKDMFQSRGSLGHNMYQSETSTQAFPYGFQSQPNQNYHKGTEFPFQINSLNPNLIRNSSMQLPPLDGFVEPTPQVPTFFEDDLNSVVQMGFGQNQNQSFPGVAGNVPNSQMKVEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19589" e_stop="19527"/>
            <exon e_start="19420" e_stop="19355"/>
            <exon e_start="19250" e_stop="19182"/>
            <exon e_start="19071" e_stop="19000"/>
            <exon e_start="18894" e_stop="17958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.984" e_score="0.937"/>
          <exon-intron don_prob="0.983" acc_prob="0.995" e_score="0.985"/>
          <exon-intron don_prob="0.975" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.974" e_score="0.958"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="19589" e_stop="19527" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.984">
            <gDNA_intron_boundary i_start="19526" i_stop="19421" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="19420" e_stop="19355" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19354" i_stop="19251" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19250" e_stop="19182" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.929">
            <gDNA_intron_boundary i_start="19181" i_stop="19072" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="0.958">
            <gDNA_exon_boundary e_start="19071" e_stop="19000" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.974">
            <gDNA_intron_boundary i_start="18999" i_stop="18895" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="18894" e_stop="17958" e_length="937"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19589" stop="19527"/>
              <exon start="19420" stop="19355"/>
              <exon start="19250" stop="19182"/>
              <exon start="19071" stop="19000"/>
              <exon start="18894" stop="18738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18740" stop="17958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18527" stop="17973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTATATTCATGTGAGAGCTAGAAGGGGACAGGCCACAGATGCACATAGTCTAGCTGAAAGA : GTGAGAAGGGAGAAAATTAGTGAAAGAATGAAGCTTTTACAAGATCTTGTACCAGGCTGCAATAAG : GTGACTGGAAAAGCTGTAATGCTTGATGAGATTATTAACTATGTACAATCACTTCAACGTCAAGTTGAG : TTCCTTTCAATGAAATTAGCTACTGTGAATCCAAGAATGGACTTTAATATGGAAGCACTTCTTTCCAAGGAT : ATGTTTCAATCTAGGGGATCATTGGGACATAACATGTATCAATCAGAAACATCAACCCAAGCATTTCCTTATGGATTTCAATCTCAACCAAACCAAAATTATCATAAAGGAACAGAGTTTCCTTTCCAAATTAACTCATTGAATCCTAATTTGATCAGAAATTCAAGTATGCAATTGCCTCCTCTAGATGGTTTTGTTGAGCCTACCCCTCAGGTAATAAATTTAATCCTGATAGTTTGAGTTCTTCAAAAATATTATTATATCTGTGTCGTTTCATGTAAATATCGAAGCAGAATAGGTATTTATTAAAAAAATTGTAACATACTAAATGAAAGTTTAATTTGTTTCTTTTAGGTCCCCACATTCTTTGAGGATGATCTCAATAGTGTTGTTCAAATGGGATTTGGACAAAATCAGAACCAAAGTTTTCCGGGTGTAGCAGGTAACTTGTCTTATTGTACGATCTATTCTTTAAATGGTTTATTAGTATAAATATATATTTTTATACTGTCAATATACAAAAGATTAGAAAATTGCACCTATCGATTTTTATACAAAAATAGTTTTAACATTTTTTTTTCTTTGTTGAAAAATGCAGGCAATGTACCTAATTCTCAAATGAAAGTTGAACTATGACCCAAAAAAGCTCAGTAAAAATTGATGAATTTATTTGAGGCCCTAAGGCTTTGTACATAAAGAGAGGGAAAATTCGCGATTAAGACCTATTCAAAGCAAATATCGCGATTCAAGAAGAAAGAAGAAATTAAAGAGATATTTTTTTCTCTTAAAAAATTCTTGATTTATTTAGTGATTAATTTGGCTTATTGTTATTATTACTGTTTCAATTATTTTTCTCTCCTTTCATGTAATTCTTACTACAAAAATTGGAGAGGCAATTAGCAAACTCTACCAAGATTTGCACTTTGTAAAATATTTT</gDNA_template>
            <first_frame> D  Y  I  H  V  R  A  R  R  G  Q  A  T  D  A  H  S  L  A  E  R  :  V  R  R  E  K  I  S  E  R  M  K  L  L  Q  D  L  V  P  G  C  N  K  :  V  T  G  K  A  V  M  L  D  E  I  I  N  Y  V  Q  S  L  Q  R  Q  V  E  :  F  L  S  M  K  L  A  T  V  N  P  R  M  D  F  N  M  E  A  L  L  S  K  D  :  M  F  Q  S  R  G  S  L  G  H  N  M  Y  Q  S  E  T  S  T  Q  A  F  P  Y  G  F  Q  S  Q  P  N  Q  N  Y  H  K  G  T  E  F  P  F  Q  I  N  S  L  N  P  N  L  I  R  N  S  S  M  Q  L  P  P  L  D  G  F  V  E  P  T  P  Q  V  I  N  L  I  L  I  V  *  V  L  Q  K  Y  Y  Y  I  C  V  V  S  C  K  Y  R  S  R  I  G  I  Y  *  K  N  C  N  I  L  N  E  S  L  I  C  F  F  *  V  P  T  F  F  E  D  D  L  N  S  V  V  Q  M  G  F  G  Q  N  Q  N  Q  S  F  P  G  V  A  G  N  L  S  Y  C  T  I  Y  S  L  N  G  L  L  V  *  I  Y  I  F  I  L  S  I  Y  K  R  L  E  N  C  T  Y  R  F  L  Y  K  N  S  F  N  I  F  F  S  L  L  K  N  A  G  N  V  P  N  S  Q  M  K  V  E  L  *  P  K  K  A  Q  *  K  L  M  N  L  F  E  A  L  R  L  C  T  *  R  E  G  K  F  A  I  K  T  Y  S  K  Q  I  S  R  F  K  K  K  E  E  I  K  E  I  F  F  S  L  K  K  F  L  I  Y  L  V  I  N  L  A  Y  C  Y  Y  Y  C  F  N  Y  F  S  L  L  S  C  N  S  Y  Y  K  N  W  R  G  N  *  Q  T  L  P  R  F  A  L  C  K  I  F  </first_frame>
            <second_frame>  T  I  F  M  *  E  L  E  G  D  R  P  Q  M  H  I  V  *  L  K  E :   *  E  G  R  K  L  V  K  E  *  S  F  Y  K  I  L  Y  Q  A  A  I  R :   *  L  E  K  L  *  C  L  M  R  L  L  T  M  Y  N  H  F  N  V  K  L  S :   S  F  Q  *  N  *  L  L  *  I  Q  E  W  T  L  I  W  K  H  F  F  P  R  I :   C  F  N  L  G  D  H  W  D  I  T  C  I  N  Q  K  H  Q  P  K  H  F  L  M  D  F  N  L  N  Q  T  K  I  I  I  K  E  Q  S  F  L  S  K  L  T  H  *  I  L  I  *  S  E  I  Q  V  C  N  C  L  L  *  M  V  L  L  S  L  P  L  R  *  *  I  *  S  *  *  F  E  F  F  K  N  I  I  I  S  V  S  F  H  V  N  I  E  A  E  *  V  F  I  K  K  I  V  T  Y  *  M  K  V  *  F  V  S  F  R  S  P  H  S  L  R  M  I  S  I  V  L  F  K  W  D  L  D  K  I  R  T  K  V  F  R  V  *  Q  V  T  C  L  I  V  R  S  I  L  *  M  V  Y  *  Y  K  Y  I  F  L  Y  C  Q  Y  T  K  D  *  K  I  A  P  I  D  F  Y  T  K  I  V  L  T  F  F  F  L  C  *  K  M  Q  A  M  Y  L  I  L  K  *  K  L  N  Y  D  P  K  K  L  S  K  N  *  *  I  Y  L  R  P  *  G  F  V  H  K  E  R  E  N  S  R  L  R  P  I  Q  S  K  Y  R  D  S  R  R  K  K  K  L  K  R  Y  F  F  L  L  K  N  S  *  F  I  *  *  L  I  W  L  I  V  I  I  T  V  S  I  I  F  L  S  F  H  V  I  L  T  T  K  I  G  E  A  I  S  K  L  Y  Q  D  L  H  F  V  K  Y  F </second_frame>
            <third_frame>   L  Y  S  C  E  S  *  K  G  T  G  H  R  C  T  *  S  S  *  K   : S  E  K  G  E  N  *  *  K  N  E  A  F  T  R  S  C  T  R  L  Q  *   : G  D  W  K  S  C  N  A  *  *  D  Y  *  L  C  T  I  T  S  T  S  S  *   : V  P  F  N  E  I  S  Y  C  E  S  K  N  G  L  *  Y  G  S  T  S  F  Q  G   : Y  V  S  I  *  G  I  I  G  T  *  H  V  S  I  R  N  I  N  P  S  I  S  L  W  I  S  I  S  T  K  P  K  L  S  *  R  N  R  V  S  F  P  N  *  L  I  E  S  *  F  D  Q  K  F  K  Y  A  I  A  S  S  R  W  F  C  *  A  Y  P  S  G  N  K  F  N  P  D  S  L  S  S  S  K  I  L  L  Y  L  C  R  F  M  *  I  S  K  Q  N  R  Y  L  L  K  K  L  *  H  T  K  *  K  F  N  L  F  L  L  G  P  H  I  L  *  G  *  S  Q  *  C  C  S  N  G  I  W  T  K  S  E  P  K  F  S  G  C  S  R  *  L  V  L  L  Y  D  L  F  F  K  W  F  I  S  I  N  I  Y  F  Y  T  V  N  I  Q  K  I  R  K  L  H  L  S  I  F  I  Q  K  *  F  *  H  F  F  F  F  V  E  K  C  R  Q  C  T  *  F  S  N  E  S  *  T  M  T  Q  K  S  S  V  K  I  D  E  F  I  *  G  P  K  A  L  Y  I  K  R  G  K  I  R  D  *  D  L  F  K  A  N  I  A  I  Q  E  E  R  R  N  *  R  D  I  F  F  S  *  K  I  L  D  L  F  S  D  *  F  G  L  L  L  L  L  L  F  Q  L  F  F  S  P  F  M  *  F  L  L  Q  K  L  E  R  Q  L  A  N  S  T  K  I  C  T  L  *  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19589" stop="19527"/>
                    <exon start="19420" stop="19355"/>
                    <exon start="19250" stop="19182"/>
                    <exon start="19071" stop="19000"/>
                    <exon start="18894" stop="18655"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYIHVRARRGQATDAHSLAERVRREKISERMKLLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMEALLSKDMFQSRGSLGHNMYQSETSTQAFPYGFQSQPNQNYHKGTEFPFQINSLNPNLIRNSSMQLPPLDGFVEPTPQVINLILIV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18198" stop="17995"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REGKFAIKTYSKQISRFKKKEEIKEIFFSLKKFLIYLVINLAYCYYYCFNYFSLLSCNSYYKNWRGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20566" PGL_stop="19613"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20566" e_stop="19842"/>
            <exon e_start="19715" e_stop="19613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.792" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="20566" e_stop="19842" e_length="725"/>
          </exon>
          <intron i_serial="1" don_prob="0.792" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19841" i_stop="19716" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19715" e_stop="19613" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20566" stop="20053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20528" stop="19842"/>
              <exon start="19715" stop="19613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20528" stop="19907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20527" stop="20030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20084" stop="19842"/>
              <exon start="19715" stop="19638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTCTCCTCTCTACATGTTTTCTTTCCTTTCAAACAACAAAGTCATTTTCTTCTAATATTTTGTTACTACTCCAAAAGATATTGTGTCCATTTTTTTTCCAAGAAAATTCCTACCCTTTTTTCTTCTTGAATTTTTAGCCTTTTGGGGTTCTTTTTTTCAAAATGGAAAAGGGAAATTTGTTCATAAATGATGATAACACTACCTATGAACATCTTCAAAATTGTTTCTTTAATCCCAATTTAGATAACAACAATTCTGATCCATTTGAATCAGCATTGAGTTCAATGGTATCTTCTCCTATTTCAATTCCTAATAATAATAGTGGTAGTGATAATTTTGTATTAAGGGAATTAATTGGTAGACTAGGAAGTATTTGTAACAATACTAATAATAATAGTAGTAGTACTAATAATTCTTGTTATAGTACCCCTTTAAATTCTCCACCAAAATTGAATCTTTCTATGAGAGGTAATTTACCACCAACACAATTTACTACTGATCCTGGATTTGCAGAAAGAGCTGCTAGATTTTCTTGTTTTGCTACAAATTTAGAAAGTAATCATTCCATCAAGATTCAAGATGTCAATTTGGTTCAAAGAAATTCTGAATTTGGAGATTCAAGAGAAAATTCATCACTTTCTGAGCAAATGATTGGTCAAAATGATACAAATTCAAGAAAAAGAAAATCAATTTCCAAGGGAAAATCATCCAAGATTGTCAAT : GATAAAAATGAATCAAATGCCAAAAGAAGCAAGTCTGAGGAAAATGAAAATAAAGTAACAAAAAAAGAGGAAAATGCTGTTTTAGAAGAAAATAAAGATAACC</gDNA_template>
            <first_frame> Q  F  S  S  L  H  V  F  F  P  F  K  Q  Q  S  H  F  L  L  I  F  C  Y  Y  S  K  R  Y  C  V  H  F  F  S  K  K  I  P  T  L  F  S  S  *  I  F  S  L  L  G  F  F  F  S  K  W  K  R  E  I  C  S  *  M  M  I  T  L  P  M  N  I  F  K  I  V  S  L  I  P  I  *  I  T  T  I  L  I  H  L  N  Q  H  *  V  Q  W  Y  L  L  L  F  Q  F  L  I  I  I  V  V  V  I  I  L  Y  *  G  N  *  L  V  D  *  E  V  F  V  T  I  L  I  I  I  V  V  V  L  I  I  L  V  I  V  P  L  *  I  L  H  Q  N  *  I  F  L  *  E  V  I  Y  H  Q  H  N  L  L  L  I  L  D  L  Q  K  E  L  L  D  F  L  V  L  L  Q  I  *  K  V  I  I  P  S  R  F  K  M  S  I  W  F  K  E  I  L  N  L  E  I  Q  E  K  I  H  H  F  L  S  K  *  L  V  K  M  I  Q  I  Q  E  K  E  N  Q  F  P  R  E  N  H  P  R  L  S  M :   I  K  M  N  Q  M  P  K  E  A  S  L  R  K  M  K  I  K  *  Q  K  K  R  K  M  L  F  *  K  K  I  K  I  T </first_frame>
            <second_frame>  N  S  P  L  Y  M  F  S  F  L  S  N  N  K  V  I  F  F  *  Y  F  V  T  T  P  K  D  I  V  S  I  F  F  P  R  K  F  L  P  F  F  L  L  E  F  L  A  F  W  G  S  F  F  Q  N  G  K  G  K  F  V  H  K  *  *  *  H  Y  L  *  T  S  S  K  L  F  L  *  S  Q  F  R  *  Q  Q  F  *  S  I  *  I  S  I  E  F  N  G  I  F  S  Y  F  N  S  *  *  *  *  W  *  *  *  F  C  I  K  G  I  N  W  *  T  R  K  Y  L  *  Q  Y  *  *  *  *  *  *  Y  *  *  F  L  L  *  Y  P  F  K  F  S  T  K  I  E  S  F  Y  E  R  *  F  T  T  N  T  I  Y  Y  *  S  W  I  C  R  K  S  C  *  I  F  L  F  C  Y  K  F  R  K  *  S  F  H  Q  D  S  R  C  Q  F  G  S  K  K  F  *  I  W  R  F  K  R  K  F  I  T  F  *  A  N  D  W  S  K  *  Y  K  F  K  K  K  K  I  N  F  Q  G  K  I  I  Q  D  C  Q   : *  *  K  *  I  K  C  Q  K  K  Q  V  *  G  K  *  K  *  S  N  K  K  R  G  K  C  C  F  R  R  K  *  R  *   </second_frame>
            <third_frame>   I  L  L  S  T  C  F  L  S  F  Q  T  T  K  S  F  S  S  N  I  L  L  L  L  Q  K  I  L  C  P  F  F  F  Q  E  N  S  Y  P  F  F  F  L  N  F  *  P  F  G  V  L  F  F  K  M  E  K  G  N  L  F  I  N  D  D  N  T  T  Y  E  H  L  Q  N  C  F  F  N  P  N  L  D  N  N  N  S  D  P  F  E  S  A  L  S  S  M  V  S  S  P  I  S  I  P  N  N  N  S  G  S  D  N  F  V  L  R  E  L  I  G  R  L  G  S  I  C  N  N  T  N  N  N  S  S  S  T  N  N  S  C  Y  S  T  P  L  N  S  P  P  K  L  N  L  S  M  R  G  N  L  P  P  T  Q  F  T  T  D  P  G  F  A  E  R  A  A  R  F  S  C  F  A  T  N  L  E  S  N  H  S  I  K  I  Q  D  V  N  L  V  Q  R  N  S  E  F  G  D  S  R  E  N  S  S  L  S  E  Q  M  I  G  Q  N  D  T  N  S  R  K  R  K  S  I  S  K  G  K  S  S  K  I  V  N  :  D  K  N  E  S  N  A  K  R  S  K  S  E  E  N  E  N  K  V  T  K  K  E  E  N  A  V  L  E  E  N  K  D  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20426" stop="19842"/>
                    <exon start="19715" stop="19614"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFGVLFFKMEKGNLFINDDNTTYEHLQNCFFNPNLDNNNSDPFESALSSMVSSPISIPNNNSGSDNFVLRELIGRLGSICNNTNNNSSSTNNSCYSTPLNSPPKLNLSMRGNLPPTQFTTDPGFAERAARFSCFATNLESNHSIKIQDVNLVQRNSEFGDSRENSSLSEQMIGQNDTNSRKRKSISKGKSSKIVNDKNESNAKRSKSEENENKVTKKEENAVLEENKDN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="26329" PGL_stop="27217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26329" e_stop="26466"/>
            <exon e_start="26793" e_stop="27217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.704" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26329" e_stop="26466" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.704" acc_prob="0.994">
            <gDNA_intron_boundary i_start="26467" i_stop="26792" i_length="326"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26793" e_stop="27217" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26329" stop="26466"/>
              <exon start="26793" stop="27217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGCAGGCGATCATCCTCCGATAACTCCGATGCGTTCTGCTAGTGAGGATAGTTTGGGGAATGATGCATGGAAGTTGTACCAGTACATCTGCCAGCATTTTTTGGGAACTCTCTCTCCAGATTGCAAATATAGAAG : GATAAAAGTTGAATTTGAAAGTGGAGGAGAGCAATTTCAGTGCGTTGGGCAGCTTGCCACAGTCAAAGGATTCACCTCTATTATGCCATGGCTGGCTATTAGTGAGAAGAATCTTCCTGAGTTTGCTGTAGGAGAGAAAATCGAGGTTTCTAAAGTTGAACTAGATGAGGTATCACATAATCTGTTCAATTGAACTTCTCATTTGTTCTTCAGCTCTGGATTAAATTGCTAGTCTTTGCACTTCAGTAGTATTTATTGGTCCATTAGTTAATTCTTTTGATTTAGGGTACAACTACACCTCAATCTCAAGTTAGTTGGGGTTGTCTATATGAATCCTCATTATCCATCATTTTACCTGACACTTTGTTCTTTCTTTGCTATGAAATGACTTGAAACACCCGCAGCTTACTGAGTATATGACCCTA</gDNA_template>
            <first_frame> *  C  R  R  S  S  S  D  N  S  D  A  F  C  *  *  G  *  F  G  E  *  C  M  E  V  V  P  V  H  L  P  A  F  F  G  N  S  L  S  R  L  Q  I  *  K  :  D  K  S  *  I  *  K  W  R  R  A  I  S  V  R  W  A  A  C  H  S  Q  R  I  H  L  Y  Y  A  M  A  G  Y  *  *  E  E  S  S  *  V  C  C  R  R  E  N  R  G  F  *  S  *  T  R  *  G  I  T  *  S  V  Q  L  N  F  S  F  V  L  Q  L  W  I  K  L  L  V  F  A  L  Q  *  Y  L  L  V  H  *  L  I  L  L  I  *  G  T  T  T  P  Q  S  Q  V  S  W  G  C  L  Y  E  S  S  L  S  I  I  L  P  D  T  L  F  F  L  C  Y  E  M  T  *  N  T  R  S  L  L  S  I  *  P   </first_frame>
            <second_frame>  D  A  G  D  H  P  P  I  T  P  M  R  S  A  S  E  D  S  L  G  N  D  A  W  K  L  Y  Q  Y  I  C  Q  H  F  L  G  T  L  S  P  D  C  K  Y  R  R :   I  K  V  E  F  E  S  G  G  E  Q  F  Q  C  V  G  Q  L  A  T  V  K  G  F  T  S  I  M  P  W  L  A  I  S  E  K  N  L  P  E  F  A  V  G  E  K  I  E  V  S  K  V  E  L  D  E  V  S  H  N  L  F  N  *  T  S  H  L  F  F  S  S  G  L  N  C  *  S  L  H  F  S  S  I  Y  W  S  I  S  *  F  F  *  F  R  V  Q  L  H  L  N  L  K  L  V  G  V  V  Y  M  N  P  H  Y  P  S  F  Y  L  T  L  C  S  F  F  A  M  K  *  L  E  T  P  A  A  Y  *  V  Y  D  P  </second_frame>
            <third_frame>   M  Q  A  I  I  L  R  *  L  R  C  V  L  L  V  R  I  V  W  G  M  M  H  G  S  C  T  S  T  S  A  S  I  F  W  E  L  S  L  Q  I  A  N  I  E   : G  *  K  L  N  L  K  V  E  E  S  N  F  S  A  L  G  S  L  P  Q  S  K  D  S  P  L  L  C  H  G  W  L  L  V  R  R  I  F  L  S  L  L  *  E  R  K  S  R  F  L  K  L  N  *  M  R  Y  H  I  I  C  S  I  E  L  L  I  C  S  S  A  L  D  *  I  A  S  L  C  T  S  V  V  F  I  G  P  L  V  N  S  F  D  L  G  Y  N  Y  T  S  I  S  S  *  L  G  L  S  I  *  I  L  I  I  H  H  F  T  *  H  F  V  L  S  L  L  *  N  D  L  K  H  P  Q  L  T  E  Y  M  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26330" stop="26466"/>
                    <exon start="26793" stop="26985"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAGDHPPITPMRSASEDSLGNDAWKLYQYICQHFLGTLSPDCKYRRIKVEFESGGEQFQCVGQLATVKGFTSIMPWLAISEKNLPEFAVGEKIEVSKVELDEVSHNLFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27586" PGL_stop="29096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27586" e_stop="27590"/>
            <exon e_start="27728" e_stop="27940"/>
            <exon e_start="28586" e_stop="28765"/>
            <exon e_start="28944" e_stop="29096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.877" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.304" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.827" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27586" e_stop="27590" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.877" acc_prob="0.992">
            <gDNA_intron_boundary i_start="27591" i_stop="27727" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27728" e_stop="27940" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.304" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27941" i_stop="28585" i_length="645"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28586" e_stop="28765" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.827">
            <gDNA_intron_boundary i_start="28766" i_stop="28943" i_length="178"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="28944" e_stop="29096" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27586" stop="27590"/>
              <exon start="27728" stop="27940"/>
              <exon start="28586" stop="28765"/>
              <exon start="28944" stop="29096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCAG : GTACAAGCTGGGCGGCGATTGGCTCCAACTCCCCTGGGTATCAGCTTGATAAGAGGGTATCAATGCATAGATTCTGATCTCTGTTTGCCTGACATACGAAGTTTCATTGAGCACCAGATCACTTTGGTAGCTAAAGGTCAAGCAGATCATTCAATGGTTGTGCAGCATGTACTAGAACAATTCAGAAGGAAGTTCAGTTATTTTGTTAAGCAG : ATTGATAACATGGACGCACTATTTGAAGCCCAATTTTCTCCACTTTCAGACTCTGGACGTCTCCTCAGTAAATGTGGCAAATGCTTGCGATATATGAAATACATATCTACTCAACCAGCTCGACTGTACTGTGGTACCTGTGAGGAAGTCTATTATGTACCTCAGAAGGGTACAGTCAAG : CTATACAAGGAGCTTACTTGCCCCCTTGATAATTTCGAGCTGTTGCTATGTAGCATGCCTGGTCCCGAAGGCAAGTCGTTCCCTCTCTGTCCTTATTGCTTCAACTGTCCCCCGTTTGAAGGCATAGATACATTTTTTGGCGCTCCTAAAACT</gDNA_template>
            <first_frame> S  R :   Y  K  L  G  G  D  W  L  Q  L  P  W  V  S  A  *  *  E  G  I  N  A  *  I  L  I  S  V  C  L  T  Y  E  V  S  L  S  T  R  S  L  W  *  L  K  V  K  Q  I  I  Q  W  L  C  S  M  Y  *  N  N  S  E  G  S  S  V  I  L  L  S  R :   L  I  T  W  T  H  Y  L  K  P  N  F  L  H  F  Q  T  L  D  V  S  S  V  N  V  A  N  A  C  D  I  *  N  T  Y  L  L  N  Q  L  D  C  T  V  V  P  V  R  K  S  I  M  Y  L  R  R  V  Q  S  S :   Y  T  R  S  L  L  A  P  L  I  I  S  S  C  C  Y  V  A  C  L  V  P  K  A  S  R  S  L  S  V  L  I  A  S  T  V  P  R  L  K  A  *  I  H  F  L  A  L  L  K   </first_frame>
            <second_frame>  P   : G  T  S  W  A  A  I  G  S  N  S  P  G  Y  Q  L  D  K  R  V  S  M  H  R  F  *  S  L  F  A  *  H  T  K  F  H  *  A  P  D  H  F  G  S  *  R  S  S  R  S  F  N  G  C  A  A  C  T  R  T  I  Q  K  E  V  Q  L  F  C  *  A   : D  *  *  H  G  R  T  I  *  S  P  I  F  S  T  F  R  L  W  T  S  P  Q  *  M  W  Q  M  L  A  I  Y  E  I  H  I  Y  S  T  S  S  T  V  L  W  Y  L  *  G  S  L  L  C  T  S  E  G  Y  S  Q   : A  I  Q  G  A  Y  L  P  P  *  *  F  R  A  V  A  M  *  H  A  W  S  R  R  Q  V  V  P  S  L  S  L  L  L  Q  L  S  P  V  *  R  H  R  Y  I  F  W  R  S  *  N  </second_frame>
            <third_frame>   Q  :  V  Q  A  G  R  R  L  A  P  T  P  L  G  I  S  L  I  R  G  Y  Q  C  I  D  S  D  L  C  L  P  D  I  R  S  F  I  E  H  Q  I  T  L  V  A  K  G  Q  A  D  H  S  M  V  V  Q  H  V  L  E  Q  F  R  R  K  F  S  Y  F  V  K  Q  :  I  D  N  M  D  A  L  F  E  A  Q  F  S  P  L  S  D  S  G  R  L  L  S  K  C  G  K  C  L  R  Y  M  K  Y  I  S  T  Q  P  A  R  L  Y  C  G  T  C  E  E  V  Y  Y  V  P  Q  K  G  T  V  K  :  L  Y  K  E  L  T  C  P  L  D  N  F  E  L  L  L  C  S  M  P  G  P  E  G  K  S  F  P  L  C  P  Y  C  F  N  C  P  P  F  E  G  I  D  T  F  F  G  A  P  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27588" stop="27590"/>
                    <exon start="27728" stop="27940"/>
                    <exon start="28586" stop="28765"/>
                    <exon start="28944" stop="29096"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVQAGRRLAPTPLGISLIRGYQCIDSDLCLPDIRSFIEHQITLVAKGQADHSMVVQHVLEQFRRKFSYFVKQIDNMDALFEAQFSPLSDSGRLLSKCGKCLRYMKYISTQPARLYCGTCEEVYYVPQKGTVKLYKELTCPLDNFELLLCSMPGPEGKSFPLCPYCFNCPPFEGIDTFFGAPKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="29357" PGL_stop="30476"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29357" e_stop="29808"/>
            <exon e_start="29978" e_stop="29999"/>
            <exon e_start="30451" e_stop="30476"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.759" e_score="0.969"/>
          <exon-intron don_prob="0.546" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.808"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="29357" e_stop="29808" e_length="452"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.759">
            <gDNA_intron_boundary i_start="29809" i_stop="29977" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="29978" e_stop="29999" e_length="22"/>
          </exon>
          <intron i_serial="2" don_prob="0.546" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30000" i_stop="30450" i_length="451"/>
          </intron>
          <exon e_serial="3" e_score="0.808">
            <gDNA_exon_boundary e_start="30451" e_stop="30476" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29357" stop="29808"/>
              <exon start="29978" stop="29999"/>
              <exon start="30451" stop="30476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549054" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTCGATTTCAACAAGAAAACAACGCCCTTGAAAGATGGAGCTACACTCCATAAGGGTTGTATTCTTTGCGACGAGCTGCTGCATTCACTTGTGGAAATGAAACATGGAAGATCGTTTTCTAGGCATGGCAGGAGAGGAAGAGGTAGAGGAAGAGGAAGAGGAGGTTATCGCGGAAGAGGACGGGGCAGCAACAAACAACAAGACCCAAAAATGAGTTTCCGAGATTTCTAAAGTGTTGTTTGATTATCTTACTAGAAGTTTGAAATATGATTTAGATTTTTCTCATAAAAATTTGTTAATTAGAGATCATTATGTCAGAGACAACACGTTACTTGTTTGGAATTGAGATGTAGTTGTAGTTGTAGGGAGGACATTTTGTTGAACTAGGAACAATATATATGCTGGTTTATTTTAGAGAAAAGAAAAAAGATATTGACAGTTGCACTGTTAA : GAGTGGGAATGAAAGAAAACAT : AAAAAAAGACAAAAAGAAAAAAAAAA</gDNA_template>
            <first_frame> S  R  F  Q  Q  E  N  N  A  L  E  R  W  S  Y  T  P  *  G  L  Y  S  L  R  R  A  A  A  F  T  C  G  N  E  T  W  K  I  V  F  *  A  W  Q  E  R  K  R  *  R  K  R  K  R  R  L  S  R  K  R  T  G  Q  Q  Q  T  T  R  P  K  N  E  F  P  R  F  L  K  C  C  L  I  I  L  L  E  V  *  N  M  I  *  I  F  L  I  K  I  C  *  L  E  I  I  M  S  E  T  T  R  Y  L  F  G  I  E  M  *  L  *  L  *  G  G  H  F  V  E  L  G  T  I  Y  M  L  V  Y  F  R  E  K  K  K  D  I  D  S  C  T  V  K :   S  G  N  E  R  K  H  :  K  K  R  Q  K  E  K  K   </first_frame>
            <second_frame>  V  D  F  N  K  K  T  T  P  L  K  D  G  A  T  L  H  K  G  C  I  L  C  D  E  L  L  H  S  L  V  E  M  K  H  G  R  S  F  S  R  H  G  R  R  G  R  G  R  G  R  G  R  G  G  Y  R  G  R  G  R  G  S  N  K  Q  Q  D  P  K  M  S  F  R  D  F  *  S  V  V  *  L  S  Y  *  K  F  E  I  *  F  R  F  F  S  *  K  F  V  N  *  R  S  L  C  Q  R  Q  H  V  T  C  L  E  L  R  C  S  C  S  C  R  E  D  I  L  L  N  *  E  Q  Y  I  C  W  F  I  L  E  K  R  K  K  I  L  T  V  A  L  L   : R  V  G  M  K  E  N  I :   K  K  D  K  K  K  K  K  </second_frame>
            <third_frame>   S  I  S  T  R  K  Q  R  P  *  K  M  E  L  H  S  I  R  V  V  F  F  A  T  S  C  C  I  H  L  W  K  *  N  M  E  D  R  F  L  G  M  A  G  E  E  E  V  E  E  E  E  E  E  V  I  A  E  E  D  G  A  A  T  N  N  K  T  Q  K  *  V  S  E  I  S  K  V  L  F  D  Y  L  T  R  S  L  K  Y  D  L  D  F  S  H  K  N  L  L  I  R  D  H  Y  V  R  D  N  T  L  L  V  W  N  *  D  V  V  V  V  V  G  R  T  F  C  *  T  R  N  N  I  Y  A  G  L  F  *  R  K  E  K  R  Y  *  Q  L  H  C  *  :  E  W  E  *  K  K  T   : *  K  K  T  K  R  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29358" stop="29588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDFNKKTTPLKDGATLHKGCILCDELLHSLVEMKHGRSFSRHGRRGRGRGRGRGGYRGRGRGSNKQQDPKMSFRDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="30756" PGL_stop="31429"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30756" e_stop="31429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30756" e_stop="31429" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30756" stop="31429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30756" stop="31277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30756" stop="31276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30756" stop="31275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30756" stop="31137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30756" stop="30996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239846" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAAGTAGTAGTTGGTTACCACTAGTTCTTATCATTTTCCCAAAATAAAATTGAAATTTCAAGATTCCAAATATTTCAAGAACATTAGACATGGGATTATATGAATCATGTTGTGTTATAGTCCTATATTTTATGTTCTTACTTTTGAATCCTCAATTTTCATGTTCCATGTCATGTACAACACAAAAGTTCACCAGCAACAAATTGTATGAACATTGCAATGACTTGCCACATTTGAATTGTTACCTTCATTGGACTTACAATCCAAAAATTTCTTCTTTAAATTTAGCATTTGCAGCTACTCCTACTAAGCCTAATGGATGGATTTCATGGGGAATCAATCCAAATGGGACGGGAATGATTGGTACACAATCGTTGATCGCGTTTAAAAATCTCAACGATACTATAGTTGTGAAAACCTTCAAGTTGAACTCGTATAAGTCTATCGTGGAAGGGGAACTTGAGTATCGCGTTTCGAATATGCAAGCAATGTATAGTAATGAGCTGATGGTAATTTTTGCTAGTGTTGAATTACCTAAAGGAATGAAAGAGTTGAATCAAGTATGGCAAGTTGGAAGTTTAGTGTTAAATGGGACATTTCCAGGAATTCATGATTTTCAAATTGAAAATTTGAATTCAAAAGGAAAACTTGATTTGATGAAAGGAAAAAATG</gDNA_template>
            <first_frame> H  K  *  *  L  V  T  T  S  S  Y  H  F  P  K  I  K  L  K  F  Q  D  S  K  Y  F  K  N  I  R  H  G  I  I  *  I  M  L  C  Y  S  P  I  F  Y  V  L  T  F  E  S  S  I  F  M  F  H  V  M  Y  N  T  K  V  H  Q  Q  Q  I  V  *  T  L  Q  *  L  A  T  F  E  L  L  P  S  L  D  L  Q  S  K  N  F  F  F  K  F  S  I  C  S  Y  S  Y  *  A  *  W  M  D  F  M  G  N  Q  S  K  W  D  G  N  D  W  Y  T  I  V  D  R  V  *  K  S  Q  R  Y  Y  S  C  E  N  L  Q  V  E  L  V  *  V  Y  R  G  R  G  T  *  V  S  R  F  E  Y  A  S  N  V  *  *  *  A  D  G  N  F  C  *  C  *  I  T  *  R  N  E  R  V  E  S  S  M  A  S  W  K  F  S  V  K  W  D  I  S  R  N  S  *  F  S  N  *  K  F  E  F  K  R  K  T  *  F  D  E  R  K  K   </first_frame>
            <second_frame>  T  S  S  S  W  L  P  L  V  L  I  I  F  P  K  *  N  *  N  F  K  I  P  N  I  S  R  T  L  D  M  G  L  Y  E  S  C  C  V  I  V  L  Y  F  M  F  L  L  L  N  P  Q  F  S  C  S  M  S  C  T  T  Q  K  F  T  S  N  K  L  Y  E  H  C  N  D  L  P  H  L  N  C  Y  L  H  W  T  Y  N  P  K  I  S  S  L  N  L  A  F  A  A  T  P  T  K  P  N  G  W  I  S  W  G  I  N  P  N  G  T  G  M  I  G  T  Q  S  L  I  A  F  K  N  L  N  D  T  I  V  V  K  T  F  K  L  N  S  Y  K  S  I  V  E  G  E  L  E  Y  R  V  S  N  M  Q  A  M  Y  S  N  E  L  M  V  I  F  A  S  V  E  L  P  K  G  M  K  E  L  N  Q  V  W  Q  V  G  S  L  V  L  N  G  T  F  P  G  I  H  D  F  Q  I  E  N  L  N  S  K  G  K  L  D  L  M  K  G  K  N  </second_frame>
            <third_frame>   Q  V  V  V  G  Y  H  *  F  L  S  F  S  Q  N  K  I  E  I  S  R  F  Q  I  F  Q  E  H  *  T  W  D  Y  M  N  H  V  V  L  *  S  Y  I  L  C  S  Y  F  *  I  L  N  F  H  V  P  C  H  V  Q  H  K  S  S  P  A  T  N  C  M  N  I  A  M  T  C  H  I  *  I  V  T  F  I  G  L  T  I  Q  K  F  L  L  *  I  *  H  L  Q  L  L  L  L  S  L  M  D  G  F  H  G  E  S  I  Q  M  G  R  E  *  L  V  H  N  R  *  S  R  L  K  I  S  T  I  L  *  L  *  K  P  S  S  *  T  R  I  S  L  S  W  K  G  N  L  S  I  A  F  R  I  C  K  Q  C  I  V  M  S  *  W  *  F  L  L  V  L  N  Y  L  K  E  *  K  S  *  I  K  Y  G  K  L  E  V  *  C  *  M  G  H  F  Q  E  F  M  I  F  K  L  K  I  *  I  Q  K  E  N  L  I  *  *  K  E  K  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30811" stop="31428"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFKIPNISRTLDMGLYESCCVIVLYFMFLLLNPQFSCSMSCTTQKFTSNKLYEHCNDLPHLNCYLHWTYNPKISSLNLAFAATPTKPNGWISWGINPNGTGMIGTQSLIAFKNLNDTIVVKTFKLNSYKSIVEGELEYRVSNMQAMYSNELMVIFASVELPKGMKELNQVWQVGSLVLNGTFPGIHDFQIENLNSKGKLDLMKGKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="31703" PGL_stop="32866"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31703" e_stop="31896"/>
            <exon e_start="32385" e_stop="32866"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.933" e_score="0.995"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="31703" e_stop="31896" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.933">
            <gDNA_intron_boundary i_start="31897" i_stop="32384" i_length="488"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="32385" e_stop="32866" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31703" stop="31896"/>
              <exon start="32385" stop="32866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATCGCAAGGTATCTAAGAACATTTTTGGATCCAATATGGTTTTATGTTCATGTGACTTGTCAAATATCATCTTATATTATTGGAGTTTCTGGTTGGGCCACTGGTCTAAAACTTGGAAGCCAATCCAAAGGAATTATTTACAATTCTCATAGAGATTTTGGTATTGCCTTGTTTTGTCTTGCAACTCTACAG : GTGTTTGCAATATTTTTGAGGCCAAAGAAGGAACACAAATACAGATTTTATTGGAATATGTATCATCATGGAGTTGGATATGGTGTACTTGTTCTAGGTATCATTAATGTATTTAAAGGTCTTGAAATTTTACAACCACAAAGCAAATGGAAATTGGCTTATATTATTTTCCTATCAATTATTGGAGGAATTGCTCTTATTTTAGAAGCAATTACTTGGATAATTGTACTTAAAAGGAAGCCTAGAAAATCAAATAACAAACTTCATGATGGACAAAATGGAAGACAACAACCTCTCACTTCTTGAAGTTATTATTGAGTTTTATTTTTTCATATATATATATATTTGTTTTTCTATGGTTGGGTTGAATTTATTTTAATAATTTTCTTCTTGTTTAGAATCCATACTCTTATGAGAGTATTGTTGTTGTATTGCTTCATTTTAGTATTTATATAGTAAGGAATATAAATATTGTTGCTATT</gDNA_template>
            <first_frame> *  S  Q  G  I  *  E  H  F  W  I  Q  Y  G  F  M  F  M  *  L  V  K  Y  H  L  I  L  L  E  F  L  V  G  P  L  V  *  N  L  E  A  N  P  K  E  L  F  T  I  L  I  E  I  L  V  L  P  C  F  V  L  Q  L  Y  R :   C  L  Q  Y  F  *  G  Q  R  R  N  T  N  T  D  F  I  G  I  C  I  I  M  E  L  D  M  V  Y  L  F  *  V  S  L  M  Y  L  K  V  L  K  F  Y  N  H  K  A  N  G  N  W  L  I  L  F  S  Y  Q  L  L  E  E  L  L  L  F  *  K  Q  L  L  G  *  L  Y  L  K  G  S  L  E  N  Q  I  T  N  F  M  M  D  K  M  E  D  N  N  L  S  L  L  E  V  I  I  E  F  Y  F  F  I  Y  I  Y  I  C  F  S  M  V  G  L  N  L  F  *  *  F  S  S  C  L  E  S  I  L  L  *  E  Y  C  C  C  I  A  S  F  *  Y  L  Y  S  K  E  Y  K  Y  C  C  Y  </first_frame>
            <second_frame>  D  R  K  V  S  K  N  I  F  G  S  N  M  V  L  C  S  C  D  L  S  N  I  I  L  Y  Y  W  S  F  W  L  G  H  W  S  K  T  W  K  P  I  Q  R  N  Y  L  Q  F  S  *  R  F  W  Y  C  L  V  L  S  C  N  S  T   : G  V  C  N  I  F  E  A  K  E  G  T  Q  I  Q  I  L  L  E  Y  V  S  S  W  S  W  I  W  C  T  C  S  R  Y  H  *  C  I  *  R  S  *  N  F  T  T  T  K  Q  M  E  I  G  L  Y  Y  F  P  I  N  Y  W  R  N  C  S  Y  F  R  S  N  Y  L  D  N  C  T  *  K  E  A  *  K  I  K  *  Q  T  S  *  W  T  K  W  K  T  T  T  S  H  F  L  K  L  L  L  S  F  I  F  S  Y  I  Y  I  F  V  F  L  W  L  G  *  I  Y  F  N  N  F  L  L  V  *  N  P  Y  S  Y  E  S  I  V  V  V  L  L  H  F  S  I  Y  I  V  R  N  I  N  I  V  A  I </second_frame>
            <third_frame>   I  A  R  Y  L  R  T  F  L  D  P  I  W  F  Y  V  H  V  T  C  Q  I  S  S  Y  I  I  G  V  S  G  W  A  T  G  L  K  L  G  S  Q  S  K  G  I  I  Y  N  S  H  R  D  F  G  I  A  L  F  C  L  A  T  L  Q  :  V  F  A  I  F  L  R  P  K  K  E  H  K  Y  R  F  Y  W  N  M  Y  H  H  G  V  G  Y  G  V  L  V  L  G  I  I  N  V  F  K  G  L  E  I  L  Q  P  Q  S  K  W  K  L  A  Y  I  I  F  L  S  I  I  G  G  I  A  L  I  L  E  A  I  T  W  I  I  V  L  K  R  K  P  R  K  S  N  N  K  L  H  D  G  Q  N  G  R  Q  Q  P  L  T  S  *  S  Y  Y  *  V  L  F  F  H  I  Y  I  Y  L  F  F  Y  G  W  V  E  F  I  L  I  I  F  F  L  F  R  I  H  T  L  M  R  V  L  L  L  Y  C  F  I  L  V  F  I  *  *  G  I  *  I  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31705" stop="31896"/>
                    <exon start="32385" stop="32690"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IARYLRTFLDPIWFYVHVTCQISSYIIGVSGWATGLKLGSQSKGIIYNSHRDFGIALFCLATLQVFAIFLRPKKEHKYRFYWNMYHHGVGYGVLVLGIINVFKGLEILQPQSKWKLAYIIFLSIIGGIALILEAITWIIVLKRKPRKSNNKLHDGQNGRQQPLTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="34709" PGL_stop="34212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34709" e_stop="34212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="34709" e_stop="34212" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34709" stop="34212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34708" stop="34212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAGACGTTAGTATTGAAGAAGGCGCGAAGCTTGCAGAAGCAGAAGGATTGTTCTTCATGGAGACATCCGCGTTGGATTCTACAAACGTTAATAAGGCTTTCGAGATTGTTATCCGTGAAATCTATAGCAATGTCAGTCGAAAGGTCTTGAATTCGGATTCCTACAAGGCAGAGTTATCTATTAACAGGGTAAACCTTGTAAAAGACGACGGAGAAGGATCGAAACGATCTTGGAGCAGTTGTTGCTCAAGATGAACCATGTCTTAACTGGTTATACATTTTGTTATTGTTAGCTCAAGATTAAGAGATTTTTCAGTATTCATTCAATTCAGTAACACAGTGAATTGTATAAATCTCTCTTAACTCTGATTGAGCATATGTATTCTCACTTTTAAGTTTTATTACTCTTAAACGATAAATTGTTTGATTCGATGTAAACATCAGGTACGAGGAACTATTTTTTATGGAGACATATTTATTTTTAGCAGACTACATGT</gDNA_template>
            <first_frame> *  R  R  *  Y  *  R  R  R  E  A  C  R  S  R  R  I  V  L  H  G  D  I  R  V  G  F  Y  K  R  *  *  G  F  R  D  C  Y  P  *  N  L  *  Q  C  Q  S  K  G  L  E  F  G  F  L  Q  G  R  V  I  Y  *  Q  G  K  P  C  K  R  R  R  R  R  I  E  T  I  L  E  Q  L  L  L  K  M  N  H  V  L  T  G  Y  T  F  C  Y  C  *  L  K  I  K  R  F  F  S  I  H  S  I  Q  *  H  S  E  L  Y  K  S  L  L  T  L  I  E  H  M  Y  S  H  F  *  V  L  L  L  L  N  D  K  L  F  D  S  M  *  T  S  G  T  R  N  Y  F  L  W  R  H  I  Y  F  *  Q  T  T  C </first_frame>
            <second_frame>  R  D  V  S  I  E  E  G  A  K  L  A  E  A  E  G  L  F  F  M  E  T  S  A  L  D  S  T  N  V  N  K  A  F  E  I  V  I  R  E  I  Y  S  N  V  S  R  K  V  L  N  S  D  S  Y  K  A  E  L  S  I  N  R  V  N  L  V  K  D  D  G  E  G  S  K  R  S  W  S  S  C  C  S  R  *  T  M  S  *  L  V  I  H  F  V  I  V  S  S  R  L  R  D  F  S  V  F  I  Q  F  S  N  T  V  N  C  I  N  L  S  *  L  *  L  S  I  C  I  L  T  F  K  F  Y  Y  S  *  T  I  N  C  L  I  R  C  K  H  Q  V  R  G  T  I  F  Y  G  D  I  F  I  F  S  R  L  H   </second_frame>
            <third_frame>   E  T  L  V  L  K  K  A  R  S  L  Q  K  Q  K  D  C  S  S  W  R  H  P  R  W  I  L  Q  T  L  I  R  L  S  R  L  L  S  V  K  S  I  A  M  S  V  E  R  S  *  I  R  I  P  T  R  Q  S  Y  L  L  T  G  *  T  L  *  K  T  T  E  K  D  R  N  D  L  G  A  V  V  A  Q  D  E  P  C  L  N  W  L  Y  I  L  L  L  L  A  Q  D  *  E  I  F  Q  Y  S  F  N  S  V  T  Q  *  I  V  *  I  S  L  N  S  D  *  A  Y  V  F  S  L  L  S  F  I  T  L  K  R  *  I  V  *  F  D  V  N  I  R  Y  E  E  L  F  F  M  E  T  Y  L  F  L  A  D  Y  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34708" stop="34454"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDVSIEEGAKLAEAEGLFFMETSALDSTNVNKAFEIVIREIYSNVSRKVLNSDSYKAELSINRVNLVKDDGEGSKRSWSSCCSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="40821" PGL_stop="42585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40831" e_stop="41649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="40831" e_stop="41649" e_length="819"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40831" stop="41373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40833" stop="41649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739284" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAACCATGAAAAAAGCTTCCAATTCGCAAAACTAACTCCACCCCATCTCTCAAAATTCAATCTTTTTTCAATCTCTGTCCAAATCTTGATTATTAGATTAGTACTGATAATGTCTGTTGCAGCAATGGGCATAGTTTCAGGAGGCATTGGGTATCTTTCACAGTTGTTTACAAGTGATATAGCTGCTTCTACTCATCAGTTTTGTTGTTTTTCAGTGAATTCAAGCCCATTGCATATGAATTTTTCTAGGAGTGGTTGTTTGGTGAAAAGGGGTTCTTTGTTAAGCCCTAGAGTTTCAGTTTCTACTACTGGTAATGCTAAGATTGATGGAGTTGATGATCAGTTATCTTTGTCACCTGATGAGATCAAACCAGCTCGGGTGAGACCCTTTATTCGTATTTGCATTGTGAACATTTTGCAAATTTGCAACTTGAAAAATTTGAGTTTTTGAAGTTGGGATTTTTGGAATTTGAAGTTGTGTTTTAACATGCATTTCACTTGAAAAAAGTTTGAAATTTGAAGTTTTGTGATGGAAAGTCCCAAGAATCTTGAAAATATTTGAAGATCAGATTTTTGAATTGATCAAATTTCGTGGCCAAACAGATATTTGAATATATATTTTTTTGAAAGCTACTCCCAGGTCAAACGCTAGCTTAAGCCTTTATAGACTTCCTATATTGCTTGTGGATGGGTGTTAATTTTTTTAAAAGGACAGTCATTGATAAATGCAATTGTTTTCTCCATTATGATGCTCTCATGACGAACATCCTTTCATCATCTGAGTGGGTGGTTAAGCAGGGTTTACTTTGTTAATAAA</gDNA_template>
            <first_frame> Q  N  H  E  K  S  F  Q  F  A  K  L  T  P  P  H  L  S  K  F  N  L  F  S  I  S  V  Q  I  L  I  I  R  L  V  L  I  M  S  V  A  A  M  G  I  V  S  G  G  I  G  Y  L  S  Q  L  F  T  S  D  I  A  A  S  T  H  Q  F  C  C  F  S  V  N  S  S  P  L  H  M  N  F  S  R  S  G  C  L  V  K  R  G  S  L  L  S  P  R  V  S  V  S  T  T  G  N  A  K  I  D  G  V  D  D  Q  L  S  L  S  P  D  E  I  K  P  A  R  V  R  P  F  I  R  I  C  I  V  N  I  L  Q  I  C  N  L  K  N  L  S  F  *  S  W  D  F  W  N  L  K  L  C  F  N  M  H  F  T  *  K  K  F  E  I  *  S  F  V  M  E  S  P  K  N  L  E  N  I  *  R  S  D  F  *  I  D  Q  I  S  W  P  N  R  Y  L  N  I  Y  F  F  E  S  Y  S  Q  V  K  R  *  L  K  P  L  *  T  S  Y  I  A  C  G  W  V  L  I  F  L  K  G  Q  S  L  I  N  A  I  V  F  S  I  M  M  L  S  *  R  T  S  F  H  H  L  S  G  W  L  S  R  V  Y  F  V  N  K </first_frame>
            <second_frame>  K  T  M  K  K  A  S  N  S  Q  N  *  L  H  P  I  S  Q  N  S  I  F  F  Q  S  L  S  K  S  *  L  L  D  *  Y  *  *  C  L  L  Q  Q  W  A  *  F  Q  E  A  L  G  I  F  H  S  C  L  Q  V  I  *  L  L  L  L  I  S  F  V  V  F  Q  *  I  Q  A  H  C  I  *  I  F  L  G  V  V  V  W  *  K  G  V  L  C  *  A  L  E  F  Q  F  L  L  L  V  M  L  R  L  M  E  L  M  I  S  Y  L  C  H  L  M  R  S  N  Q  L  G  *  D  P  L  F  V  F  A  L  *  T  F  C  K  F  A  T  *  K  I  *  V  F  E  V  G  I  F  G  I  *  S  C  V  L  T  C  I  S  L  E  K  S  L  K  F  E  V  L  *  W  K  V  P  R  I  L  K  I  F  E  D  Q  I  F  E  L  I  K  F  R  G  Q  T  D  I  *  I  Y  I  F  L  K  A  T  P  R  S  N  A  S  L  S  L  Y  R  L  P  I  L  L  V  D  G  C  *  F  F  *  K  D  S  H  *  *  M  Q  L  F  S  P  L  *  C  S  H  D  E  H  P  F  I  I  *  V  G  G  *  A  G  F  T  L  L  I   </second_frame>
            <third_frame>   K  P  *  K  K  L  P  I  R  K  T  N  S  T  P  S  L  K  I  Q  S  F  F  N  L  C  P  N  L  D  Y  *  I  S  T  D  N  V  C  C  S  N  G  H  S  F  R  R  H  W  V  S  F  T  V  V  Y  K  *  Y  S  C  F  Y  S  S  V  L  L  F  F  S  E  F  K  P  I  A  Y  E  F  F  *  E  W  L  F  G  E  K  G  F  F  V  K  P  *  S  F  S  F  Y  Y  W  *  C  *  D  *  W  S  *  *  S  V  I  F  V  T  *  *  D  Q  T  S  S  G  E  T  L  Y  S  Y  L  H  C  E  H  F  A  N  L  Q  L  E  K  F  E  F  L  K  L  G  F  L  E  F  E  V  V  F  *  H  A  F  H  L  K  K  V  *  N  L  K  F  C  D  G  K  S  Q  E  S  *  K  Y  L  K  I  R  F  L  N  *  S  N  F  V  A  K  Q  I  F  E  Y  I  F  F  *  K  L  L  P  G  Q  T  L  A  *  A  F  I  D  F  L  Y  C  L  W  M  G  V  N  F  F  K  R  T  V  I  D  K  C  N  C  F  L  H  Y  D  A  L  M  T  N  I  L  S  S  S  E  W  V  V  K  Q  G  L  L  C  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40831" stop="41283"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNHEKSFQFAKLTPPHLSKFNLFSISVQILIIRLVLIMSVAAMGIVSGGIGYLSQLFTSDIAASTHQFCCFSVNSSPLHMNFSRSGCLVKRGSLLSPRVSVSTTGNAKIDGVDDQLSLSPDEIKPARVRPFIRICIVNILQICNLKNLSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40821" e_stop="41211"/>
            <exon e_start="42183" e_stop="42342"/>
            <exon e_start="42524" e_stop="42585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="0.962"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.944"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="40821" e_stop="41211" e_length="391"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41212" i_stop="42182" i_length="971"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="42183" e_stop="42342" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="42343" i_stop="42523" i_length="181"/>
          </intron>
          <exon e_serial="3" e_score="0.952">
            <gDNA_exon_boundary e_start="42524" e_stop="42585" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40821" stop="41211"/>
              <exon start="42183" stop="42342"/>
              <exon start="42524" stop="42585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40821" stop="41211"/>
              <exon start="42183" stop="42342"/>
              <exon start="42524" stop="42585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317007" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAATTTCCCAAAACCATGAAAAAAGCTTCCAATTCGCAAAACTAACTCCACCCCATCTCTCAAAATTCAATCTTTTTTCAATCTCTGTCCAAATCTTGATTATTAGATTAGTACTGATAATGTCTGTTGCAGCAATGGGCATAGTTTCAGGAGGCATTGGGTATCTTTCACAGTTGTTTACAAGTGATATAGCTGCTTCTACTCATCAGTTTTGTTGTTTTTCAGTGAATTCAAGCCCATTGCATATGAATTTTTCTAGGAGTGGTTGTTTGGTGAAAAGGGGTTCTTTGTTAAGCCCTAGAGTTTCAGTTTCTACTACTGGTAATGCTAAGATTGATGGAGTTGATGATCAGTTATCTTTGTCACCTGATGAGATCAAACCAGCTCGG : AAGTCTGCTGATTGGAAAGCAGCAAGGACATACAGTGAGAGGGGACTGATATTTGAGGGCAAGGTTGAAGGCTTCAATGGTGGTGGTTTGCTGATTCGATTTTATTCTCTCGTGGGTTTTCTGCCCTTCCCACAGATGAGCCCTTATCACTCTTGTAAAG : AACCACAAAAGACTATTCAAGAGATTGCGAGGGACTTGACCGGTTCTGTCCTCTCTGTGAAG</gDNA_template>
            <first_frame> P  N  F  P  K  P  *  K  K  L  P  I  R  K  T  N  S  T  P  S  L  K  I  Q  S  F  F  N  L  C  P  N  L  D  Y  *  I  S  T  D  N  V  C  C  S  N  G  H  S  F  R  R  H  W  V  S  F  T  V  V  Y  K  *  Y  S  C  F  Y  S  S  V  L  L  F  F  S  E  F  K  P  I  A  Y  E  F  F  *  E  W  L  F  G  E  K  G  F  F  V  K  P  *  S  F  S  F  Y  Y  W  *  C  *  D  *  W  S  *  *  S  V  I  F  V  T  *  *  D  Q  T  S  S   : E  V  C  *  L  E  S  S  K  D  I  Q  *  E  G  T  D  I  *  G  Q  G  *  R  L  Q  W  W  W  F  A  D  S  I  L  F  S  R  G  F  S  A  L  P  T  D  E  P  L  S  L  L  *  R :   T  T  K  D  Y  S  R  D  C  E  G  L  D  R  F  C  P  L  C  E  </first_frame>
            <second_frame>  Q  I  S  Q  N  H  E  K  S  F  Q  F  A  K  L  T  P  P  H  L  S  K  F  N  L  F  S  I  S  V  Q  I  L  I  I  R  L  V  L  I  M  S  V  A  A  M  G  I  V  S  G  G  I  G  Y  L  S  Q  L  F  T  S  D  I  A  A  S  T  H  Q  F  C  C  F  S  V  N  S  S  P  L  H  M  N  F  S  R  S  G  C  L  V  K  R  G  S  L  L  S  P  R  V  S  V  S  T  T  G  N  A  K  I  D  G  V  D  D  Q  L  S  L  S  P  D  E  I  K  P  A  R  :  K  S  A  D  W  K  A  A  R  T  Y  S  E  R  G  L  I  F  E  G  K  V  E  G  F  N  G  G  G  L  L  I  R  F  Y  S  L  V  G  F  L  P  F  P  Q  M  S  P  Y  H  S  C  K   : E  P  Q  K  T  I  Q  E  I  A  R  D  L  T  G  S  V  L  S  V  K </second_frame>
            <third_frame>   K  F  P  K  T  M  K  K  A  S  N  S  Q  N  *  L  H  P  I  S  Q  N  S  I  F  F  Q  S  L  S  K  S  *  L  L  D  *  Y  *  *  C  L  L  Q  Q  W  A  *  F  Q  E  A  L  G  I  F  H  S  C  L  Q  V  I  *  L  L  L  L  I  S  F  V  V  F  Q  *  I  Q  A  H  C  I  *  I  F  L  G  V  V  V  W  *  K  G  V  L  C  *  A  L  E  F  Q  F  L  L  L  V  M  L  R  L  M  E  L  M  I  S  Y  L  C  H  L  M  R  S  N  Q  L  G :   S  L  L  I  G  K  Q  Q  G  H  T  V  R  G  D  *  Y  L  R  A  R  L  K  A  S  M  V  V  V  C  *  F  D  F  I  L  S  W  V  F  C  P  S  H  R  *  A  L  I  T  L  V  K  :  N  H  K  R  L  F  K  R  L  R  G  T  *  P  V  L  S  S  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40822" stop="41211"/>
                    <exon start="42183" stop="42342"/>
                    <exon start="42524" stop="42585"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISQNHEKSFQFAKLTPPHLSKFNLFSISVQILIIRLVLIMSVAAMGIVSGGIGYLSQLFTSDIAASTHQFCCFSVNSSPLHMNFSRSGCLVKRGSLLSPRVSVSTTGNAKIDGVDDQLSLSPDEIKPARKSADWKAARTYSERGLIFEGKVEGFNGGGLLIRFYSLVGFLPFPQMSPYHSCKEPQKTIQEIARDLTGSVLSVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="52705" PGL_stop="50436"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52705" e_stop="52510"/>
            <exon e_start="51088" e_stop="50436"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52705" e_stop="52510" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52509" i_stop="51089" i_length="1421"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="51088" e_stop="50436" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52705" stop="52510"/>
              <exon start="51088" stop="50436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52704" stop="52510"/>
              <exon start="51088" stop="50582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52704" stop="52510"/>
              <exon start="51088" stop="50918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52663" stop="52510"/>
              <exon start="51088" stop="50547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAGTCGGCGCAGTTTCAAAATTTTATGTAAATCACAACAGAAGAAGAAGAAGATGAAGGGAAAAACAGAGAATGATGAAGAAGGAGCAAAAGGGGTTGTGACTCTTGAAGAGCTGAAGAAAAAAATGGCTGATTTTGCTAAAGAAAGAGAGTGGGATCAGTTTCATACACCAAGAAATCTCCTTTTAGCTATG : GTGGGTGAAGTGGGAGAATTGTCTGAAATATTTCAGTGGAAAGGTGAGGTCCCAAGAGGTCTACCAGATTGGGCAGAAAAAGAGAAGCAGCATTTAGGTGAAGAGCTATCAGATGTATTGCTTTATCTTGTCAGGCTTTCAGATATTTGTGGCATTGATCTAGGTAATGCTGTACTCAGAAAACTGGAGCTTAATGCCATTAAATACCCTGTTAGTCTTTGCAAAGGTTCATCAAAAAAGCTTACTCTTTTGAGCAAAAGTACAACCACCACCACCACCACCTCAAGCAGTGAAAATGGTGTGATTAATGATGGTGAATGATCTTTTTTTGATTTAGTAGGTGGTCTATTTATAGGTACTTGCAATGACATCTAATAGTTTTTTTTTGTGCTAAAAGGGGATGTAGAGACATATAGTGTTTGATTTGAAGTAACATGTATCAAGTCAACTAATTTCTTCCTATTTCTAGATTGTTTGGTTTTTTGCTTTATCCATATCCCCTTTGCCTACAGGTTAATACTGTAGAAGTTTAAGACAAATGTGTTGAGATTTGTGTAGTATAATTTTTCGTCATTTGAATTTGTTTGTATGATTTTGACTTGGCAAAAAATAGTTGTTCTTTTAGAAGTGGATTTAAAAATATAAAAGACAAA</gDNA_template>
            <first_frame> K  Q  S  A  Q  F  Q  N  F  M  *  I  T  T  E  E  E  E  D  E  G  K  N  R  E  *  *  R  R  S  K  R  G  C  D  S  *  R  A  E  E  K  N  G  *  F  C  *  R  K  R  V  G  S  V  S  Y  T  K  K  S  P  F  S  Y   : G  G  *  S  G  R  I  V  *  N  I  S  V  E  R  *  G  P  K  R  S  T  R  L  G  R  K  R  E  A  A  F  R  *  R  A  I  R  C  I  A  L  S  C  Q  A  F  R  Y  L  W  H  *  S  R  *  C  C  T  Q  K  T  G  A  *  C  H  *  I  P  C  *  S  L  Q  R  F  I  K  K  A  Y  S  F  E  Q  K  Y  N  H  H  H  H  H  L  K  Q  *  K  W  C  D  *  *  W  *  M  I  F  F  *  F  S  R  W  S  I  Y  R  Y  L  Q  *  H  L  I  V  F  F  C  A  K  R  G  C  R  D  I  *  C  L  I  *  S  N  M  Y  Q  V  N  *  F  L  P  I  S  R  L  F  G  F  L  L  Y  P  Y  P  L  C  L  Q  V  N  T  V  E  V  *  D  K  C  V  E  I  C  V  V  *  F  F  V  I  *  I  C  L  Y  D  F  D  L  A  K  N  S  C  S  F  R  S  G  F  K  N  I  K  D  K </first_frame>
            <second_frame>  N  S  R  R  S  F  K  I  L  C  K  S  Q  Q  K  K  K  K  M  K  G  K  T  E  N  D  E  E  G  A  K  G  V  V  T  L  E  E  L  K  K  K  M  A  D  F  A  K  E  R  E  W  D  Q  F  H  T  P  R  N  L  L  L  A  M  :  V  G  E  V  G  E  L  S  E  I  F  Q  W  K  G  E  V  P  R  G  L  P  D  W  A  E  K  E  K  Q  H  L  G  E  E  L  S  D  V  L  L  Y  L  V  R  L  S  D  I  C  G  I  D  L  G  N  A  V  L  R  K  L  E  L  N  A  I  K  Y  P  V  S  L  C  K  G  S  S  K  K  L  T  L  L  S  K  S  T  T  T  T  T  T  T  S  S  S  E  N  G  V  I  N  D  G  E  *  S  F  F  D  L  V  G  G  L  F  I  G  T  C  N  D  I  *  *  F  F  F  V  L  K  G  D  V  E  T  Y  S  V  *  F  E  V  T  C  I  K  S  T  N  F  F  L  F  L  D  C  L  V  F  C  F  I  H  I  P  F  A  Y  R  L  I  L  *  K  F  K  T  N  V  L  R  F  V  *  Y  N  F  S  S  F  E  F  V  C  M  I  L  T  W  Q  K  I  V  V  L  L  E  V  D  L  K  I  *  K  T   </second_frame>
            <third_frame>   T  V  G  A  V  S  K  F  Y  V  N  H  N  R  R  R  R  R  *  R  E  K  Q  R  M  M  K  K  E  Q  K  G  L  *  L  L  K  S  *  R  K  K  W  L  I  L  L  K  K  E  S  G  I  S  F  I  H  Q  E  I  S  F  *  L  W :   W  V  K  W  E  N  C  L  K  Y  F  S  G  K  V  R  S  Q  E  V  Y  Q  I  G  Q  K  K  R  S  S  I  *  V  K  S  Y  Q  M  Y  C  F  I  L  S  G  F  Q  I  F  V  A  L  I  *  V  M  L  Y  S  E  N  W  S  L  M  P  L  N  T  L  L  V  F  A  K  V  H  Q  K  S  L  L  F  *  A  K  V  Q  P  P  P  P  P  P  Q  A  V  K  M  V  *  L  M  M  V  N  D  L  F  L  I  *  *  V  V  Y  L  *  V  L  A  M  T  S  N  S  F  F  L  C  *  K  G  M  *  R  H  I  V  F  D  L  K  *  H  V  S  S  Q  L  I  S  S  Y  F  *  I  V  W  F  F  A  L  S  I  S  P  L  P  T  G  *  Y  C  R  S  L  R  Q  M  C  *  D  L  C  S  I  I  F  R  H  L  N  L  F  V  *  F  *  L  G  K  K  *  L  F  F  *  K  W  I  *  K  Y  K  R  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52704" stop="52510"/>
                    <exon start="51088" stop="50768"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSRRSFKILCKSQQKKKKMKGKTENDEEGAKGVVTLEELKKKMADFAKEREWDQFHTPRNLLLAMVGEVGELSEIFQWKGEVPRGLPDWAEKEKQHLGEELSDVLLYLVRLSDICGIDLGNAVLRKLELNAIKYPVSLCKGSSKKLTLLSKSTTTTTTTSSSENGVINDGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="60931" PGL_stop="62515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60931" e_stop="61167"/>
            <exon e_start="61266" e_stop="61466"/>
            <exon e_start="61582" e_stop="61754"/>
            <exon e_start="61846" e_stop="61948"/>
            <exon e_start="62045" e_stop="62515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.685" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.916" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60931" e_stop="61167" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="61168" i_stop="61265" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61266" e_stop="61466" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.685" acc_prob="0.987">
            <gDNA_intron_boundary i_start="61467" i_stop="61581" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61582" e_stop="61754" e_length="173"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="61755" i_stop="61845" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61846" e_stop="61948" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.916">
            <gDNA_intron_boundary i_start="61949" i_stop="62044" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62045" e_stop="62515" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60931" stop="61167"/>
              <exon start="61266" stop="61466"/>
              <exon start="61582" stop="61754"/>
              <exon start="61846" stop="61948"/>
              <exon start="62045" stop="62515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60939" stop="61154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60942" stop="61167"/>
              <exon start="61266" stop="61443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60942" stop="61167"/>
              <exon start="61266" stop="61428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60948" stop="61167"/>
              <exon start="61266" stop="61466"/>
              <exon start="61582" stop="61661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60949" stop="61167"/>
              <exon start="61266" stop="61466"/>
              <exon start="61582" stop="61754"/>
              <exon start="61846" stop="61901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60955" stop="61167"/>
              <exon start="61266" stop="61457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60959" stop="61167"/>
              <exon start="61266" stop="61466"/>
              <exon start="61582" stop="61752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61705" stop="61754"/>
              <exon start="61846" stop="61948"/>
              <exon start="62045" stop="62501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61730" stop="61754"/>
              <exon start="61846" stop="61948"/>
              <exon start="62045" stop="62501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61860" stop="61948"/>
              <exon start="62045" stop="62506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202661" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAACGACAACAATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAG : GCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACG : GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATAAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACACGCTGTTCATCCAATAACAGCAGTACAATTAGAATGGTCACTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGCAG : AGAACTCGGAATTGGGATTGTAGCATACAGTCCACTAGGCCGGGGCTTTTTGTCATCCGGTCCAAAGCTGGTTGAGGACTTGACAAATGAAGATTTCCGAAAG : CATCTACCGAGGTTTCAGGGCGAGAATCTTGAGCATAACAAAAAATTGTACGAGAGGATTTGTGAATTGGCAACTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCGGGCACCACTAAGATTGAAAATTTCAATCAGAACATTGGAGCTCTGTCCATAAAGCTAACATCAGAAGACATGGCAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCAGCAACCTACAAAGATTCAGAAACTCCTCCTATTTCAGCATGGAAGGCTACATAAATATAGAGTTGTTCTTGTGTTGTGCACTGTATGTAATGAGGTTTCTTTTTTCCTGTTTCAAAACTATTGTGCCACTTACTGATGGTTCAAATAATAAAATCAATTCTCTGTTTGTGGACTTTTTCCTATGGA</gDNA_template>
            <first_frame> *  T  T  T  M  T  K  E  G  K  N  V  K  R  I  K  L  G  S  E  G  L  E  V  S  V  Q  G  L  G  C  L  G  M  S  D  F  Y  G  P  P  K  P  E  P  D  M  I  E  L  I  H  H  A  I  N  S  G  I  T  F  F  D  T  S  N  S  Y  G  P  Y  T  N  E  I  L  L  G  K  :  A  L  K  G  G  M  R  E  R  V  E  L  A  T  K  F  G  I  H  F  A  D  G  K  I  E  V  R  G  E  P  E  Y  V  R  A  A  C  E  A  S  L  K  R  L  D  V  D  C  I  D  L  Y  Y  Q  H  R  I  D  T  R  V  P  I  E  V  T  :  V  G  E  L  K  K  L  V  E  E  G  K  I  K  Y  I  G  L  S  E  A  S  A  S  T  I  R  R  A  H  A  V  H  P  I  T  A  V  Q  L  E  W  S  L  W  S  R  D  V  E  E  E  I  I  P  T  C  R :   E  L  G  I  G  I  V  A  Y  S  P  L  G  R  G  F  L  S  S  G  P  K  L  V  E  D  L  T  N  E  D  F  R  K  :  H  L  P  R  F  Q  G  E  N  L  E  H  N  K  K  L  Y  E  R  I  C  E  L  A  T  K  K  G  C  T  P  S  Q  L  A  L  A  W  V  H  H  Q  G  N  D  V  C  P  I  P  G  T  T  K  I  E  N  F  N  Q  N  I  G  A  L  S  I  K  L  T  S  E  D  M  A  E  L  E  S  I  A  S  A  N  A  V  Q  G  D  R  Y  G  S  A  A  A  T  Y  K  D  S  E  T  P  P  I  S  A  W  K  A  T  *  I  *  S  C  S  C  V  V  H  C  M  *  *  G  F  F  F  P  V  S  K  L  L  C  H  L  L  M  V  Q  I  I  K  S  I  L  C  L  W  T  F  S  Y  G </first_frame>
            <second_frame>  E  R  Q  Q  *  R  K  R  E  R  M  *  K  E  S  N  W  V  Q  R  D  L  K  Y  L  F  K  D  L  V  V  W  V  C  P  I  S  T  V  R  P  N  P  N  P  I  *  L  N  *  Y  T  M  P  L  T  P  A  *  H  F  S  I  L  Q  I  V  M  G  L  T  L  M  K  S  S  L  A  R :   L  *  R  E  E  *  G  N  E  S  S  *  Q  Q  N  L  V  Y  I  L  Q  M  E  R  *  K  Y  V  E  S  Q  N  M  *  G  Q  H  A  R  L  A  *  S  D  L  M  L  I  A  *  T  C  T  T  S  T  G  L  I  H  A  C  P  L  K  *  R :   L  E  N  L  R  S  W  L  K  R  V  K  *  N  I  *  V  Y  Q  R  L  Q  H  Q  Q  L  E  E  H  T  L  F  I  Q  *  Q  Q  Y  N  *  N  G  H  Y  G  R  E  M  *  R  K  K  *  S  L  L  A   : E  N  S  E  L  G  L  *  H  T  V  H  *  A  G  A  F  C  H  P  V  Q  S  W  L  R  T  *  Q  M  K  I  S  E  S :   I  Y  R  G  F  R  A  R  I  L  S  I  T  K  N  C  T  R  G  F  V  N  W  Q  L  R  R  D  A  P  R  L  N  W  R  W  R  G  Y  I  T  K  E  T  T  C  V  P  S  R  A  P  L  R  L  K  I  S  I  R  T  L  E  L  C  P  *  S  *  H  Q  K  T  W  Q  S  L  N  L  L  L  Q  L  M  Q  S  R  V  I  G  T  V  R  L  Q  Q  P  T  K  I  Q  K  L  L  L  F  Q  H  G  R  L  H  K  Y  R  V  V  L  V  L  C  T  V  C  N  E  V  S  F  F  L  F  Q  N  Y  C  A  T  Y  *  W  F  K  *  *  N  Q  F  S  V  C  G  L  F  P  M   </second_frame>
            <third_frame>   N  D  N  N  D  E  R  G  K  E  C  E  K  N  Q  I  G  F  R  G  T  *  S  I  C  S  R  T  W  L  S  G  Y  V  R  F  L  R  S  A  Q  T  R  T  R  Y  D  *  T  N  T  P  C  H  *  L  R  H  N  I  F  R  Y  F  K  *  L  W  A  L  H  *  *  N  P  P  W  Q   : G  F  E  G  R  N  E  G  T  S  R  V  S  N  K  I  W  Y  T  F  C  R  W  K  D  R  S  T  W  R  A  R  I  C  K  G  S  M  R  G  *  L  K  A  T  *  C  *  L  H  R  L  V  L  P  A  P  D  *  Y  T  R  A  H  *  S  N   : G  W  R  T  *  E  A  G  *  R  G  *  N  K  I  Y  R  S  I  R  G  F  S  I  N  N  *  K  S  T  R  C  S  S  N  N  S  S  T  I  R  M  V  T  M  V  E  R  C  R  G  R  N  N  P  Y  L  Q  :  R  T  R  N  W  D  C  S  I  Q  S  T  R  P  G  L  F  V  I  R  S  K  A  G  *  G  L  D  K  *  R  F  P  K   : A  S  T  E  V  S  G  R  E  S  *  A  *  Q  K  I  V  R  E  D  L  *  I  G  N  *  E  G  M  H  P  V  S  T  G  V  G  V  G  T  S  P  R  K  R  R  V  S  H  P  G  H  H  *  D  *  K  F  Q  S  E  H  W  S  S  V  H  K  A  N  I  R  R  H  G  R  A  *  I  Y  C  F  S  *  C  S  P  G  *  *  V  R  F  G  C  S  N  L  Q  R  F  R  N  S  S  Y  F  S  M  E  G  Y  I  N  I  E  L  F  L  C  C  A  L  Y  V  M  R  F  L  F  S  C  F  K  T  I  V  P  L  T  D  G  S  N  N  K  I  N  S  L  F  V  D  F  F  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60934" stop="61167"/>
                    <exon start="61266" stop="61466"/>
                    <exon start="61582" stop="61754"/>
                    <exon start="61846" stop="61948"/>
                    <exon start="62045" stop="62383"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTTMTKEGKNVKRIKLGSEGLEVSVQGLGCLGMSDFYGPPKPEPDMIELIHHAINSGITFFDTSNSYGPYTNEILLGKALKGGMRERVELATKFGIHFADGKIEVRGEPEYVRAACEASLKRLDVDCIDLYYQHRIDTRVPIEVTVGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVAYSPLGRGFLSSGPKLVEDLTNEDFRKHLPRFQGENLEHNKKLYERICELATKKGCTPSQLALAWVHHQGNDVCPIPGTTKIENFNQNIGALSIKLTSEDMAELESIASANAVQGDRYGSAAATYKDSETPPISAWKAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60939" e_stop="61167"/>
            <exon e_start="61266" e_stop="61592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60939" e_stop="61167" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="61168" i_stop="61265" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61266" e_stop="61592" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60939" stop="61154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60942" stop="61167"/>
              <exon start="61266" stop="61443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60942" stop="61167"/>
              <exon start="61266" stop="61428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60949" stop="61167"/>
              <exon start="61266" stop="61592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60955" stop="61167"/>
              <exon start="61266" stop="61457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAG : GCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGATTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACGGTTGGTTTCTCTGTTTCCATTGATAACTCTTGTCAAATCTTTACGAACACTCAATGCTGCATAAAAAATTACACTATCAGCATGTTTTATTACTGTGCAATTCTTGATCTACTAGGTTGGAGAACT</gDNA_template>
            <first_frame> N  N  D  E  R  G  K  E  C  E  K  N  Q  I  G  F  R  G  T  *  S  I  C  S  R  T  W  L  S  G  Y  V  R  F  L  R  S  A  Q  T  R  T  R  Y  D  *  T  N  T  P  C  H  *  L  R  H  N  I  F  R  Y  F  K  *  L  W  A  L  H  *  *  N  P  P  W  Q   : G  F  E  G  R  N  E  G  T  S  R  V  S  N  K  I  W  Y  T  F  C  R  W  K  D  R  S  T  W  R  A  R  I  C  K  G  S  M  R  G  *  L  K  A  T  *  C  *  L  H  R  L  V  L  P  A  P  D  *  Y  T  R  A  H  *  S  N  G  W  F  L  C  F  H  *  *  L  L  S  N  L  Y  E  H  S  M  L  H  K  K  L  H  Y  Q  H  V  L  L  L  C  N  S  *  S  T  R  L  E  N  </first_frame>
            <second_frame>  T  M  T  K  E  G  K  N  V  K  R  I  K  L  G  S  E  G  L  E  V  S  V  Q  G  L  G  C  L  G  M  S  D  F  Y  G  P  P  K  P  E  P  D  M  I  E  L  I  H  H  A  I  N  S  G  I  T  F  F  D  T  S  N  S  Y  G  P  Y  T  N  E  I  L  L  G  K  :  A  L  K  G  G  M  R  E  R  V  E  L  A  T  K  F  G  I  H  F  A  D  G  K  I  E  V  R  G  E  P  E  Y  V  R  A  A  C  E  A  S  L  K  R  L  D  V  D  C  I  D  L  Y  Y  Q  H  R  I  D  T  R  V  P  I  E  V  T  V  G  F  S  V  S  I  D  N  S  C  Q  I  F  T  N  T  Q  C  C  I  K  N  Y  T  I  S  M  F  Y  Y  C  A  I  L  D  L  L  G  W  R  T </second_frame>
            <third_frame>   Q  *  R  K  R  E  R  M  *  K  E  S  N  W  V  Q  R  D  L  K  Y  L  F  K  D  L  V  V  W  V  C  P  I  S  T  V  R  P  N  P  N  P  I  *  L  N  *  Y  T  M  P  L  T  P  A  *  H  F  S  I  L  Q  I  V  M  G  L  T  L  M  K  S  S  L  A  R :   L  *  R  E  E  *  G  N  E  S  S  *  Q  Q  N  L  V  Y  I  L  Q  M  E  R  *  K  Y  V  E  S  Q  N  M  *  G  Q  H  A  R  L  A  *  S  D  L  M  L  I  A  *  T  C  T  T  S  T  G  L  I  H  A  C  P  L  K  *  R  L  V  S  L  F  P  L  I  T  L  V  K  S  L  R  T  L  N  A  A  *  K  I  T  L  S  A  C  F  I  T  V  Q  F  L  I  Y  *  V  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60940" stop="61167"/>
                    <exon start="61266" stop="61592"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMTKEGKNVKRIKLGSEGLEVSVQGLGCLGMSDFYGPPKPEPDMIELIHHAINSGITFFDTSNSYGPYTNEILLGKALKGGMRERVELATKFGIHFADGKIEVRGEPEYVRAACEASLKRLDVDCIDLYYQHRIDTRVPIEVTVGFSVSIDNSCQIFTNTQCCIKNYTISMFYYCAILDLLGWRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="60939" e_stop="61365"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60939" e_stop="61365" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60939" stop="61365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60939" stop="61154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAATGACGAAAGAGGGAAAGAATGTGAAAAGAATCAAATTGGGTTCAGAGGGACTTGAAGTATCTGTTCAAGGACTTGGTTGTCTGGGTATGTCCGATTTCTACGGTCCGCCCAAACCCGAACCCGATATGATTGAACTAATACACCATGCCATTAACTCCGGCATAACATTTTTCGATACTTCAAATAGTTATGGGCCTTACACTAATGAAATCCTCCTTGGCAAGGTATCAATTTGTCAATTCTTTTAAGTTATGGTTGTACCGAATCGAACATGAAGTAATAAGGTGAAAGTAAATACTGAGCTGCTAAAATTCTAATACAGGCTTTGAAGGGAGGAATGAGGGAACGAGTCGAGTTAGCAACAAAATTTGGTATACATTTTGCAGATGGAAAGATAGAAGTACGTGGAGAGCCAGAATATG</gDNA_template>
            <first_frame> N  N  D  E  R  G  K  E  C  E  K  N  Q  I  G  F  R  G  T  *  S  I  C  S  R  T  W  L  S  G  Y  V  R  F  L  R  S  A  Q  T  R  T  R  Y  D  *  T  N  T  P  C  H  *  L  R  H  N  I  F  R  Y  F  K  *  L  W  A  L  H  *  *  N  P  P  W  Q  G  I  N  L  S  I  L  L  S  Y  G  C  T  E  S  N  M  K  *  *  G  E  S  K  Y  *  A  A  K  I  L  I  Q  A  L  K  G  G  M  R  E  R  V  E  L  A  T  K  F  G  I  H  F  A  D  G  K  I  E  V  R  G  E  P  E  Y  </first_frame>
            <second_frame>  T  M  T  K  E  G  K  N  V  K  R  I  K  L  G  S  E  G  L  E  V  S  V  Q  G  L  G  C  L  G  M  S  D  F  Y  G  P  P  K  P  E  P  D  M  I  E  L  I  H  H  A  I  N  S  G  I  T  F  F  D  T  S  N  S  Y  G  P  Y  T  N  E  I  L  L  G  K  V  S  I  C  Q  F  F  *  V  M  V  V  P  N  R  T  *  S  N  K  V  K  V  N  T  E  L  L  K  F  *  Y  R  L  *  R  E  E  *  G  N  E  S  S  *  Q  Q  N  L  V  Y  I  L  Q  M  E  R  *  K  Y  V  E  S  Q  N  M </second_frame>
            <third_frame>   Q  *  R  K  R  E  R  M  *  K  E  S  N  W  V  Q  R  D  L  K  Y  L  F  K  D  L  V  V  W  V  C  P  I  S  T  V  R  P  N  P  N  P  I  *  L  N  *  Y  T  M  P  L  T  P  A  *  H  F  S  I  L  Q  I  V  M  G  L  T  L  M  K  S  S  L  A  R  Y  Q  F  V  N  S  F  K  L  W  L  Y  R  I  E  H  E  V  I  R  *  K  *  I  L  S  C  *  N  S  N  T  G  F  E  G  R  N  E  G  T  S  R  V  S  N  K  I  W  Y  T  F  C  R  W  K  D  R  S  T  W  R  A  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60940" stop="61191"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMTKEGKNVKRIKLGSEGLEVSVQGLGCLGMSDFYGPPKPEPDMIELIHHAINSGITFFDTSNSYGPYTNEILLGKVSICQFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="63132" PGL_stop="66709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63132" e_stop="63380"/>
            <exon e_start="64971" e_stop="65171"/>
            <exon e_start="65777" e_stop="65949"/>
            <exon e_start="66035" e_stop="66137"/>
            <exon e_start="66254" e_stop="66709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.440" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63132" e_stop="63380" e_length="249"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63381" i_stop="64970" i_length="1590"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64971" e_stop="65171" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65172" i_stop="65776" i_length="605"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65777" e_stop="65949" e_length="173"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.440">
            <gDNA_intron_boundary i_start="65950" i_stop="66034" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66035" e_stop="66137" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="66138" i_stop="66253" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="66254" e_stop="66709" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63132" stop="63380"/>
              <exon start="64971" stop="65171"/>
              <exon start="65777" stop="65944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63151" stop="63380"/>
              <exon start="64971" stop="65171"/>
              <exon start="65777" stop="65949"/>
              <exon start="66035" stop="66137"/>
              <exon start="66254" stop="66305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63152" stop="63380"/>
              <exon start="64971" stop="65171"/>
              <exon start="65777" stop="65909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64972" stop="65171"/>
              <exon start="65777" stop="65949"/>
              <exon start="66035" stop="66137"/>
              <exon start="66254" stop="66690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65074" stop="65171"/>
              <exon start="65777" stop="65949"/>
              <exon start="66035" stop="66137"/>
              <exon start="66254" stop="66698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66095" stop="66137"/>
              <exon start="66254" stop="66709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAGCTTAAGCTGAATCACAACAATGGCGGCAGAGGGAACAAAAGTGGGAAGAATCAAATTGGGTTCAGAGGGTCTTGAAGTATCTGCTCAAGGACTTGGTTGTATGGGTATGTCCGCTTTTTACGGGCCTCCCAAACCCGATTCCGATATGGTCCAACTCATCCACCACGCCATTAACTCCGGCGTCACATTTCTCGATACTTCCGATGTATATGGGCCCCACACTAATGAAATCCTCCTCGGCAAG : GCTCTGATGGGCGGGATGAGGGAACGAGTTGAGTTAGCAACAAAATTTGCTGTAAGTTTTGCAGAAGGAAAAATGCAAGTGCGCGGAGAGCCAGCCTATGTAAGGGCAGCATGCGAGGCTAGCTTAAAGCGACTTGATGTTGACTGCATAGACTTGTACTACCAGCACCGGATTGATACACGCGTGCCCATTGAAGTAACG : GTTGGAGAACTTAAGAAGCTGGTTGAAGAGGGTAAAATTAAATATATAGGTCTATCAGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCAGTTCATCCAATAACAGCGGTTCAATTAGAATGGTCTCTATGGTCAAGAGATGTAGAGGAAGACATAGTCCCTACTTGCAG : AGAACTTGGAATCGGGATTGTAGCATACAGTCCACTAGGGCGTGGCTTTTTATCATCCGGTCCAAAGCTGCTTGAGGACTGCTCAAATGAAGATTTCCGAAAG : TATCTACCGAGGTTCCAGGGCGAGAATCTTGAGCACAACAAAAAACTGTATGAGAGGATTTGTCAAATTGCAGCTAAGAAGGGATGCACCCCGTCTCAACTGGCGTTGGCGTGGGTACATCACCAAGGAAACGACGTGTGTCCCATTCCTGGCACCACTAAGATTGAAAACTTAAACCAGAACATTGGAGCTCTGTCCATAAAGCTTACTTCTGAAGACATGACAGAGCTTGAATCTATTGCTTCAGCTAATGCAGTCCAGGGTGATAGGTACGGTTCGGCTGCGGCAACCTACAAAGATTCAGAAACTCCACCCCTTTCAGCATGGAAGGCTACATAAATATAGGCTACGTGCTGTTGTTTCAAATAATAAATTATGTCTCCAAACATAATTTGAACTTGCAATTTTTAAGTTTGCACGCTTACCGTCCAATCAATCCCTCTTATCCAACAACTT</gDNA_template>
            <first_frame> V  S  L  S  *  I  T  T  M  A  A  E  G  T  K  V  G  R  I  K  L  G  S  E  G  L  E  V  S  A  Q  G  L  G  C  M  G  M  S  A  F  Y  G  P  P  K  P  D  S  D  M  V  Q  L  I  H  H  A  I  N  S  G  V  T  F  L  D  T  S  D  V  Y  G  P  H  T  N  E  I  L  L  G  K  :  A  L  M  G  G  M  R  E  R  V  E  L  A  T  K  F  A  V  S  F  A  E  G  K  M  Q  V  R  G  E  P  A  Y  V  R  A  A  C  E  A  S  L  K  R  L  D  V  D  C  I  D  L  Y  Y  Q  H  R  I  D  T  R  V  P  I  E  V  T  :  V  G  E  L  K  K  L  V  E  E  G  K  I  K  Y  I  G  L  S  E  A  S  A  S  T  I  R  R  A  H  A  V  H  P  I  T  A  V  Q  L  E  W  S  L  W  S  R  D  V  E  E  D  I  V  P  T  C  R :   E  L  G  I  G  I  V  A  Y  S  P  L  G  R  G  F  L  S  S  G  P  K  L  L  E  D  C  S  N  E  D  F  R  K  :  Y  L  P  R  F  Q  G  E  N  L  E  H  N  K  K  L  Y  E  R  I  C  Q  I  A  A  K  K  G  C  T  P  S  Q  L  A  L  A  W  V  H  H  Q  G  N  D  V  C  P  I  P  G  T  T  K  I  E  N  L  N  Q  N  I  G  A  L  S  I  K  L  T  S  E  D  M  T  E  L  E  S  I  A  S  A  N  A  V  Q  G  D  R  Y  G  S  A  A  A  T  Y  K  D  S  E  T  P  P  L  S  A  W  K  A  T  *  I  *  A  T  C  C  C  F  K  *  *  I  M  S  P  N  I  I  *  T  C  N  F  *  V  C  T  L  T  V  Q  S  I  P  L  I  Q  Q  L </first_frame>
            <second_frame>  *  A  *  A  E  S  Q  Q  W  R  Q  R  E  Q  K  W  E  E  S  N  W  V  Q  R  V  L  K  Y  L  L  K  D  L  V  V  W  V  C  P  L  F  T  G  L  P  N  P  I  P  I  W  S  N  S  S  T  T  P  L  T  P  A  S  H  F  S  I  L  P  M  Y  M  G  P  T  L  M  K  S  S  S  A  R :   L  *  W  A  G  *  G  N  E  L  S  *  Q  Q  N  L  L  *  V  L  Q  K  E  K  C  K  C  A  E  S  Q  P  M  *  G  Q  H  A  R  L  A  *  S  D  L  M  L  T  A  *  T  C  T  T  S  T  G  L  I  H  A  C  P  L  K  *  R :   L  E  N  L  R  S  W  L  K  R  V  K  L  N  I  *  V  Y  Q  R  L  Q  H  Q  Q  L  E  E  H  M  Q  F  I  Q  *  Q  R  F  N  *  N  G  L  Y  G  Q  E  M  *  R  K  T  *  S  L  L  A   : E  N  L  E  S  G  L  *  H  T  V  H  *  G  V  A  F  Y  H  P  V  Q  S  C  L  R  T  A  Q  M  K  I  S  E  S :   I  Y  R  G  S  R  A  R  I  L  S  T  T  K  N  C  M  R  G  F  V  K  L  Q  L  R  R  D  A  P  R  L  N  W  R  W  R  G  Y  I  T  K  E  T  T  C  V  P  F  L  A  P  L  R  L  K  T  *  T  R  T  L  E  L  C  P  *  S  L  L  L  K  T  *  Q  S  L  N  L  L  L  Q  L  M  Q  S  R  V  I  G  T  V  R  L  R  Q  P  T  K  I  Q  K  L  H  P  F  Q  H  G  R  L  H  K  Y  R  L  R  A  V  V  S  N  N  K  L  C  L  Q  T  *  F  E  L  A  I  F  K  F  A  R  L  P  S  N  Q  S  L  L  S  N  N   </second_frame>
            <third_frame>   K  L  K  L  N  H  N  N  G  G  R  G  N  K  S  G  K  N  Q  I  G  F  R  G  S  *  S  I  C  S  R  T  W  L  Y  G  Y  V  R  F  L  R  A  S  Q  T  R  F  R  Y  G  P  T  H  P  P  R  H  *  L  R  R  H  I  S  R  Y  F  R  C  I  W  A  P  H  *  *  N  P  P  R  Q   : G  S  D  G  R  D  E  G  T  S  *  V  S  N  K  I  C  C  K  F  C  R  R  K  N  A  S  A  R  R  A  S  L  C  K  G  S  M  R  G  *  L  K  A  T  *  C  *  L  H  R  L  V  L  P  A  P  D  *  Y  T  R  A  H  *  S  N   : G  W  R  T  *  E  A  G  *  R  G  *  N  *  I  Y  R  S  I  R  G  F  S  I  N  N  *  K  S  T  C  S  S  S  N  N  S  G  S  I  R  M  V  S  M  V  K  R  C  R  G  R  H  S  P  Y  L  Q  :  R  T  W  N  R  D  C  S  I  Q  S  T  R  A  W  L  F  I  I  R  S  K  A  A  *  G  L  L  K  *  R  F  P  K   : V  S  T  E  V  P  G  R  E  S  *  A  Q  Q  K  T  V  *  E  D  L  S  N  C  S  *  E  G  M  H  P  V  S  T  G  V  G  V  G  T  S  P  R  K  R  R  V  S  H  S  W  H  H  *  D  *  K  L  K  P  E  H  W  S  S  V  H  K  A  Y  F  *  R  H  D  R  A  *  I  Y  C  F  S  *  C  S  P  G  *  *  V  R  F  G  C  G  N  L  Q  R  F  R  N  S  T  P  F  S  M  E  G  Y  I  N  I  G  Y  V  L  L  F  Q  I  I  N  Y  V  S  K  H  N  L  N  L  Q  F  L  S  L  H  A  Y  R  P  I  N  P  S  Y  P  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63147" stop="63380"/>
                    <exon start="64971" stop="65171"/>
                    <exon start="65777" stop="65949"/>
                    <exon start="66035" stop="66137"/>
                    <exon start="66254" stop="66592"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITTMAAEGTKVGRIKLGSEGLEVSAQGLGCMGMSAFYGPPKPDSDMVQLIHHAINSGVTFLDTSDVYGPHTNEILLGKALMGGMRERVELATKFAVSFAEGKMQVRGEPAYVRAACEASLKRLDVDCIDLYYQHRIDTRVPIEVTVGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEDIVPTCRELGIGIVAYSPLGRGFLSSGPKLLEDCSNEDFRKYLPRFQGENLEHNKKLYERICQIAAKKGCTPSQLALAWVHHQGNDVCPIPGTTKIENLNQNIGALSIKLTSEDMTELESIASANAVQGDRYGSAAATYKDSETPPLSAWKAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="66999" PGL_stop="70133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66999" e_stop="67251"/>
            <exon e_start="68376" e_stop="68591"/>
            <exon e_start="69082" e_stop="69254"/>
            <exon e_start="69340" e_stop="69442"/>
            <exon e_start="69789" e_stop="70133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="0.964"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.988"/>
          <exon-intron don_prob="0.940" acc_prob="0.774" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="66999" e_stop="67251" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67252" i_stop="68375" i_length="1124"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="68376" e_stop="68591" e_length="216"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="68592" i_stop="69081" i_length="490"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69082" e_stop="69254" e_length="173"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.774">
            <gDNA_intron_boundary i_start="69255" i_stop="69339" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69340" e_stop="69442" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69443" i_stop="69788" i_length="346"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69789" e_stop="70133" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66999" stop="67251"/>
              <exon start="68376" stop="68474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68421" stop="68591"/>
              <exon start="69082" stop="69254"/>
              <exon start="69340" stop="69442"/>
              <exon start="69789" stop="70133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGTGAAATAGGCTGAAAGGACAACAATGGCGACGGAAGGAACAAAAGTGGGAAGAATGAAGTTGGGTTCAGAGGGGCTTCAAGTATCTGTTCAAGGACTTGGTTGTATGGGTATGTCCGCTTTTTACGGGCCGCCCAAACCCGAACCCGAAATGATCGAACTAATCCACCACGCCATTAACTCCGGCGTCACTCTTCTTGATAGCTCCGATGTATATGGGCCATACACCAACGAAATCCTCATTGGTAAA : GCTTTGAAGGGAGGGATGAGAGAACGGGTTGAATTAGCAACAAAGTTTGGTATTGTTTTAGGAGATGAAAAGAAAGCAGAAGGAAAGAGAGAAGTGCATGGAAATCCAGCCTATGTAAGGTCAGCGTGCGAGGCTAGTTTAAAGCGACTTGATGTTGACTGTATAGACTTGTACTATCAGCACCGAATTGATACACGTGTGCCCATTGAAGTCACG : GTTGGAGAACTTAAGAAGCTGGTCGAAGAAGGTAAAATAAAATATATAGGTCTATCCGAGGCTTCAGCATCAACAATTAGAAGAGCACATGCTGTTCATCCAATAACAGCAGTACAATTAGAATGGTCTCTATGGTCGAGAGATGTAGAGGAAGAAATAATCCCTACTTGCAG : AGAACTCGGAATTGGGATTGTGGCATACAGTCCACTAGGACGGGGCTTTTTGTCTTCCGGTCCAAAGCTGCTTGAGGATTTGTCAAATGAAGACTACCGAAAG : CATCTGCCAAGGTTCCAGGCGGAGAATCTTGAGCATAACAAAAAGCTGTATGAGCGAATTTGTCAAATGGCAGCTAAGAAGGGATGCACTCCTTCTCAACTAGCGTTGGCTTGGGTACATCACCAAGGAAACGACGTGTGTCCCATCCCTGGCACCACTAAGATTGAAAACTTCAACCAGAACATTGGAGCTCTGTCTGTAAAGTTAACATCAGAAGACATGGCAGAACTTGAATCCATTGCCTCAGCTAACGCAGTCCAGGGTGATCGATATATACCTGGTATGAGTACTTTCAAAAATTCAGAAACGCCGCCCCTTTCAGCATGGAAGGCTACATGATGTTGC</gDNA_template>
            <first_frame> Q  S  E  I  G  *  K  D  N  N  G  D  G  R  N  K  S  G  K  N  E  V  G  F  R  G  A  S  S  I  C  S  R  T  W  L  Y  G  Y  V  R  F  L  R  A  A  Q  T  R  T  R  N  D  R  T  N  P  P  R  H  *  L  R  R  H  S  S  *  *  L  R  C  I  W  A  I  H  Q  R  N  P  H  W  *   : S  F  E  G  R  D  E  R  T  G  *  I  S  N  K  V  W  Y  C  F  R  R  *  K  E  S  R  R  K  E  R  S  A  W  K  S  S  L  C  K  V  S  V  R  G  *  F  K  A  T  *  C  *  L  Y  R  L  V  L  S  A  P  N  *  Y  T  C  A  H  *  S  H   : G  W  R  T  *  E  A  G  R  R  R  *  N  K  I  Y  R  S  I  R  G  F  S  I  N  N  *  K  S  T  C  C  S  S  N  N  S  S  T  I  R  M  V  S  M  V  E  R  C  R  G  R  N  N  P  Y  L  Q  :  R  T  R  N  W  D  C  G  I  Q  S  T  R  T  G  L  F  V  F  R  S  K  A  A  *  G  F  V  K  *  R  L  P  K   : A  S  A  K  V  P  G  G  E  S  *  A  *  Q  K  A  V  *  A  N  L  S  N  G  S  *  E  G  M  H  S  F  S  T  S  V  G  L  G  T  S  P  R  K  R  R  V  S  H  P  W  H  H  *  D  *  K  L  Q  P  E  H  W  S  S  V  C  K  V  N  I  R  R  H  G  R  T  *  I  H  C  L  S  *  R  S  P  G  *  S  I  Y  T  W  Y  E  Y  F  Q  K  F  R  N  A  A  P  F  S  M  E  G  Y  M  M  L  </first_frame>
            <second_frame>  R  V  K  *  A  E  R  T  T  M  A  T  E  G  T  K  V  G  R  M  K  L  G  S  E  G  L  Q  V  S  V  Q  G  L  G  C  M  G  M  S  A  F  Y  G  P  P  K  P  E  P  E  M  I  E  L  I  H  H  A  I  N  S  G  V  T  L  L  D  S  S  D  V  Y  G  P  Y  T  N  E  I  L  I  G  K  :  A  L  K  G  G  M  R  E  R  V  E  L  A  T  K  F  G  I  V  L  G  D  E  K  K  A  E  G  K  R  E  V  H  G  N  P  A  Y  V  R  S  A  C  E  A  S  L  K  R  L  D  V  D  C  I  D  L  Y  Y  Q  H  R  I  D  T  R  V  P  I  E  V  T  :  V  G  E  L  K  K  L  V  E  E  G  K  I  K  Y  I  G  L  S  E  A  S  A  S  T  I  R  R  A  H  A  V  H  P  I  T  A  V  Q  L  E  W  S  L  W  S  R  D  V  E  E  E  I  I  P  T  C  R :   E  L  G  I  G  I  V  A  Y  S  P  L  G  R  G  F  L  S  S  G  P  K  L  L  E  D  L  S  N  E  D  Y  R  K  :  H  L  P  R  F  Q  A  E  N  L  E  H  N  K  K  L  Y  E  R  I  C  Q  M  A  A  K  K  G  C  T  P  S  Q  L  A  L  A  W  V  H  H  Q  G  N  D  V  C  P  I  P  G  T  T  K  I  E  N  F  N  Q  N  I  G  A  L  S  V  K  L  T  S  E  D  M  A  E  L  E  S  I  A  S  A  N  A  V  Q  G  D  R  Y  I  P  G  M  S  T  F  K  N  S  E  T  P  P  L  S  A  W  K  A  T  *  C  C </second_frame>
            <third_frame>   E  *  N  R  L  K  G  Q  Q  W  R  R  K  E  Q  K  W  E  E  *  S  W  V  Q  R  G  F  K  Y  L  F  K  D  L  V  V  W  V  C  P  L  F  T  G  R  P  N  P  N  P  K  *  S  N  *  S  T  T  P  L  T  P  A  S  L  F  L  I  A  P  M  Y  M  G  H  T  P  T  K  S  S  L  V  K :   L  *  R  E  G  *  E  N  G  L  N  *  Q  Q  S  L  V  L  F  *  E  M  K  R  K  Q  K  E  R  E  K  C  M  E  I  Q  P  M  *  G  Q  R  A  R  L  V  *  S  D  L  M  L  T  V  *  T  C  T  I  S  T  E  L  I  H  V  C  P  L  K  S  R :   L  E  N  L  R  S  W  S  K  K  V  K  *  N  I  *  V  Y  P  R  L  Q  H  Q  Q  L  E  E  H  M  L  F  I  Q  *  Q  Q  Y  N  *  N  G  L  Y  G  R  E  M  *  R  K  K  *  S  L  L  A   : E  N  S  E  L  G  L  W  H  T  V  H  *  D  G  A  F  C  L  P  V  Q  S  C  L  R  I  C  Q  M  K  T  T  E  S :   I  C  Q  G  S  R  R  R  I  L  S  I  T  K  S  C  M  S  E  F  V  K  W  Q  L  R  R  D  A  L  L  L  N  *  R  W  L  G  Y  I  T  K  E  T  T  C  V  P  S  L  A  P  L  R  L  K  T  S  T  R  T  L  E  L  C  L  *  S  *  H  Q  K  T  W  Q  N  L  N  P  L  P  Q  L  T  Q  S  R  V  I  D  I  Y  L  V  *  V  L  S  K  I  Q  K  R  R  P  F  Q  H  G  R  L  H  D  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67012" stop="67251"/>
                    <exon start="68376" stop="68591"/>
                    <exon start="69082" stop="69254"/>
                    <exon start="69340" stop="69442"/>
                    <exon start="69789" stop="70127"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AERTTMATEGTKVGRMKLGSEGLQVSVQGLGCMGMSAFYGPPKPEPEMIELIHHAINSGVTLLDSSDVYGPYTNEILIGKALKGGMRERVELATKFGIVLGDEKKAEGKREVHGNPAYVRSACEASLKRLDVDCIDLYYQHRIDTRVPIEVTVGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELGIGIVAYSPLGRGFLSSGPKLLEDLSNEDYRKHLPRFQAENLEHNKKLYERICQMAAKKGCTPSQLALAWVHHQGNDVCPIPGTTKIENFNQNIGALSVKLTSEDMAELESIASANAVQGDRYIPGMSTFKNSETPPLSAWKAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="83242" PGL_stop="83524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83242" e_stop="83524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="83242" e_stop="83524" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83242" stop="83524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309339" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTGTGGGAAATTAATAGAGATTCTACTTTTTGGGAGGATCCCTTAGTGTTTAAACCTGAGAGGTTTTGGCATTCAAATTTAGACGTGCGAGGACAAGATTTTGAACTGATCCCATTTGGTGCGGGTAGAAGAATGTGCCCTGCCTTGCCACTTGCATTGCGAATGATTCCAGTCATGTTGGGCTCACTCTTGAATTCCTTCAATTGGAAACTCGAGGCAGGCATTAGACCAGAAGACCTAGACATGGAGGAGAAATTTGGTTTGGCTTTAGTCAAAGCTCA</gDNA_template>
            <first_frame> M  C  G  K  L  I  E  I  L  L  F  G  R  I  P  *  C  L  N  L  R  G  F  G  I  Q  I  *  T  C  E  D  K  I  L  N  *  S  H  L  V  R  V  E  E  C  A  L  P  C  H  L  H  C  E  *  F  Q  S  C  W  A  H  S  *  I  P  S  I  G  N  S  R  Q  A  L  D  Q  K  T  *  T  W  R  R  N  L  V  W  L  *  S  K  L  </first_frame>
            <second_frame>  C  V  G  N  *  *  R  F  Y  F  L  G  G  S  L  S  V  *  T  *  E  V  L  A  F  K  F  R  R  A  R  T  R  F  *  T  D  P  I  W  C  G  *  K  N  V  P  C  L  A  T  C  I  A  N  D  S  S  H  V  G  L  T  L  E  F  L  Q  L  E  T  R  G  R  H  *  T  R  R  P  R  H  G  G  E  I  W  F  G  F  S  Q  S  S </second_frame>
            <third_frame>   V  W  E  I  N  R  D  S  T  F  W  E  D  P  L  V  F  K  P  E  R  F  W  H  S  N  L  D  V  R  G  Q  D  F  E  L  I  P  F  G  A  G  R  R  M  C  P  A  L  P  L  A  L  R  M  I  P  V  M  L  G  S  L  L  N  S  F  N  W  K  L  E  A  G  I  R  P  E  D  L  D  M  E  E  K  F  G  L  A  L  V  K  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83244" stop="83522"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWEINRDSTFWEDPLVFKPERFWHSNLDVRGQDFELIPFGAGRRMCPALPLALRMIPVMLGSLLNSFNWKLEAGIRPEDLDMEEKFGLALVKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="87534" PGL_stop="88383"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87534" e_stop="88383"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87534" e_stop="88383" e_length="850"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87534" stop="87931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87539" stop="88091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87569" stop="88115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87594" stop="88167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87594" stop="88123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87594" stop="88116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87595" stop="88043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87596" stop="88216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87596" stop="88162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87648" stop="88253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87749" stop="88383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87751" stop="88186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87793" stop="88369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATGGATTACTATACACTTGTGTTTGTGTCAATTTTAGTGTTGGCTAATATCATAGCAAAAATATGTAGCAAAGGAAGCAAAAAACTTCCACCAGGTCCATCACCATGGCCAATTATTGGAAACCTTCAGTTGTTAGGTGCAAAACCTCATATATCACTAGCCAATCTTGCAAAAAATTATGGTCCAATTATGAGTTTAAAGTTAGGTCAAATAACAACAATAGTCATTTCCTCATCAACCATTGCAAAACAAGTCCTTAAAACTCAAGATCAAGCCTTTTCATCTAGATTTGCTCCTAATGCTCTTCAAGCGCACAACCATTACAAATTTTCTGTGGCATGGCTTCCTGTTTGTCCTCAATGGCGAACGCTTCGAAGAATATTGAACACTAACCTCTTATCTTCCAATAAGCTTGATGCAAATCAACATCTAAGGTCTCAAAAGGTGAAACAATTGATTGATTATTGTGACAAATGTAGTCAACAAGGTGAAGCTTTGGATATAGGTCAAGTTGTTTTCAAGACTAGTCTTAATTTGTTGTCAAACACACTTTTCTCCAAGGATTTGGCTGATCCTTTTTCAGATTCAAAGGTAGAGTTGAAGGAAGTTATATGGGGTATCATGGCTGAGGTAGGGAAGCCTAATTTAGTAGATTTTTTCCCCATACTTGAAAAAATTGATCTTCAAGGAATAAGACGTCGCGCTATCATTCATTTTGGTAAGTTGTTTAAACTTTTTGATGATTTGATCAACGAACGATTGGAGGAAAAGAAAAGACCAGGATTCATGGAAAAGAGCGATGTTCTTGAAATATTTCTCAATATTACTGAAAAAAATCCTCAAGAGAT</gDNA_template>
            <first_frame> L  W  I  T  I  H  L  C  L  C  Q  F  *  C  W  L  I  S  *  Q  K  Y  V  A  K  E  A  K  N  F  H  Q  V  H  H  H  G  Q  L  L  E  T  F  S  C  *  V  Q  N  L  I  Y  H  *  P  I  L  Q  K  I  M  V  Q  L  *  V  *  S  *  V  K  *  Q  Q  *  S  F  P  H  Q  P  L  Q  N  K  S  L  K  L  K  I  K  P  F  H  L  D  L  L  L  M  L  F  K  R  T  T  I  T  N  F  L  W  H  G  F  L  F  V  L  N  G  E  R  F  E  E  Y  *  T  L  T  S  Y  L  P  I  S  L  M  Q  I  N  I  *  G  L  K  R  *  N  N  *  L  I  I  V  T  N  V  V  N  K  V  K  L  W  I  *  V  K  L  F  S  R  L  V  L  I  C  C  Q  T  H  F  S  P  R  I  W  L  I  L  F  Q  I  Q  R  *  S  *  R  K  L  Y  G  V  S  W  L  R  *  G  S  L  I  *  *  I  F  S  P  Y  L  K  K  L  I  F  K  E  *  D  V  A  L  S  F  I  L  V  S  C  L  N  F  L  M  I  *  S  T  N  D  W  R  K  R  K  D  Q  D  S  W  K  R  A  M  F  L  K  Y  F  S  I  L  L  K  K  I  L  K  R  </first_frame>
            <second_frame>  Y  G  L  L  Y  T  C  V  C  V  N  F  S  V  G  *  Y  H  S  K  N  M  *  Q  R  K  Q  K  T  S  T  R  S  I  T  M  A  N  Y  W  K  P  S  V  V  R  C  K  T  S  Y  I  T  S  Q  S  C  K  K  L  W  S  N  Y  E  F  K  V  R  S  N  N  N  N  S  H  F  L  I  N  H  C  K  T  S  P  *  N  S  R  S  S  L  F  I  *  I  C  S  *  C  S  S  S  A  Q  P  L  Q  I  F  C  G  M  A  S  C  L  S  S  M  A  N  A  S  K  N  I  E  H  *  P  L  I  F  Q  *  A  *  C  K  S  T  S  K  V  S  K  G  E  T  I  D  *  L  L  *  Q  M  *  S  T  R  *  S  F  G  Y  R  S  S  C  F  Q  D  *  S  *  F  V  V  K  H  T  F  L  Q  G  F  G  *  S  F  F  R  F  K  G  R  V  E  G  S  Y  M  G  Y  H  G  *  G  R  E  A  *  F  S  R  F  F  P  H  T  *  K  N  *  S  S  R  N  K  T  S  R  Y  H  S  F  W  *  V  V  *  T  F  *  *  F  D  Q  R  T  I  G  G  K  E  K  T  R  I  H  G  K  E  R  C  S  *  N  I  S  Q  Y  Y  *  K  K  S  S  R  D </second_frame>
            <third_frame>   M  D  Y  Y  T  L  V  F  V  S  I  L  V  L  A  N  I  I  A  K  I  C  S  K  G  S  K  K  L  P  P  G  P  S  P  W  P  I  I  G  N  L  Q  L  L  G  A  K  P  H  I  S  L  A  N  L  A  K  N  Y  G  P  I  M  S  L  K  L  G  Q  I  T  T  I  V  I  S  S  S  T  I  A  K  Q  V  L  K  T  Q  D  Q  A  F  S  S  R  F  A  P  N  A  L  Q  A  H  N  H  Y  K  F  S  V  A  W  L  P  V  C  P  Q  W  R  T  L  R  R  I  L  N  T  N  L  L  S  S  N  K  L  D  A  N  Q  H  L  R  S  Q  K  V  K  Q  L  I  D  Y  C  D  K  C  S  Q  Q  G  E  A  L  D  I  G  Q  V  V  F  K  T  S  L  N  L  L  S  N  T  L  F  S  K  D  L  A  D  P  F  S  D  S  K  V  E  L  K  E  V  I  W  G  I  M  A  E  V  G  K  P  N  L  V  D  F  F  P  I  L  E  K  I  D  L  Q  G  I  R  R  R  A  I  I  H  F  G  K  L  F  K  L  F  D  D  L  I  N  E  R  L  E  E  K  K  R  P  G  F  M  E  K  S  D  V  L  E  I  F  L  N  I  T  E  K  N  P  Q  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0037I08.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87536" stop="88381"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDYYTLVFVSILVLANIIAKICSKGSKKLPPGPSPWPIIGNLQLLGAKPHISLANLAKNYGPIMSLKLGQITTIVISSSTIAKQVLKTQDQAFSSRFAPNALQAHNHYKFSVAWLPVCPQWRTLRRILNTNLLSSNKLDANQHLRSQKVKQLIDYCDKCSQQGEALDIGQVVFKTSLNLLSNTLFSKDLADPFSDSKVELKEVIWGIMAEVGKPNLVDFFPILEKIDLQGIRRRAIIHFGKLFKLFDDLINERLEEKKRPGFMEKSDVLEIFLNITEKNPQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="88043" PGL_stop="87595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88043" e_stop="87595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88043" e_stop="87595" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88043" stop="87595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCTATATCCAAAGCTTCACCTTGTTGACTACATTTGTCACAATAATCAATCAATTGTTTCACCTTTTGAGACCTTAGATGTTGATTTGCATCAAGCTTATTGGAAGATAAGAGGTTAGTGTTCAATATTCTTCGAAGCGTTCGCCATTGAGGACAAACAGGAAGCCATGCCACAGAAAATTTGTAATGGTTGTGCGCTTGAAGAGCATTAGGAGCAAATCTAGATGAAAAGGCTTGATCTTGAGTTTTAAGGACTTGTTTTGCAATGGTTGATGAGGAAATGACTATTGTTGTTATTTGACCTAACTTTAAACTCATAATTGGACCATAATTTTTTGCAAGATTGGCTAGTGATATATGAGGTTTTGCACCTAACAACTGAAGGTTTCCAATAATTGGCCATGGTGATGGACCTGGTGGAAGTTTTTTGCTTCCTTTGCTACATATT</gDNA_template>
            <first_frame> D  L  Y  P  K  L  H  L  V  D  Y  I  C  H  N  N  Q  S  I  V  S  P  F  E  T  L  D  V  D  L  H  Q  A  Y  W  K  I  R  G  *  C  S  I  F  F  E  A  F  A  I  E  D  K  Q  E  A  M  P  Q  K  I  C  N  G  C  A  L  E  E  H  *  E  Q  I  *  M  K  R  L  D  L  E  F  *  G  L  V  L  Q  W  L  M  R  K  *  L  L  L  L  F  D  L  T  L  N  S  *  L  D  H  N  F  L  Q  D  W  L  V  I  Y  E  V  L  H  L  T  T  E  G  F  Q  *  L  A  M  V  M  D  L  V  E  V  F  C  F  L  C  Y  I   </first_frame>
            <second_frame>  T  Y  I  Q  S  F  T  L  L  T  T  F  V  T  I  I  N  Q  L  F  H  L  L  R  P  *  M  L  I  C  I  K  L  I  G  R  *  E  V  S  V  Q  Y  S  S  K  R  S  P  L  R  T  N  R  K  P  C  H  R  K  F  V  M  V  V  R  L  K  S  I  R  S  K  S  R  *  K  G  L  I  L  S  F  K  D  L  F  C  N  G  *  *  G  N  D  Y  C  C  Y  L  T  *  L  *  T  H  N  W  T  I  I  F  C  K  I  G  *  *  Y  M  R  F  C  T  *  Q  L  K  V  S  N  N  W  P  W  *  W  T  W  W  K  F  F  A  S  F  A  T  Y  </second_frame>
            <third_frame>   P  I  S  K  A  S  P  C  *  L  H  L  S  Q  *  S  I  N  C  F  T  F  *  D  L  R  C  *  F  A  S  S  L  L  E  D  K  R  L  V  F  N  I  L  R  S  V  R  H  *  G  Q  T  G  S  H  A  T  E  N  L  *  W  L  C  A  *  R  A  L  G  A  N  L  D  E  K  A  *  S  *  V  L  R  T  C  F  A  M  V  D  E  E  M  T  I  V  V  I  *  P  N  F  K  L  I  I  G  P  *  F  F  A  R  L  A  S  D  I  *  G  F  A  P  N  N  *  R  F  P  I  I  G  H  G  D  G  P  G  G  S  F  L  L  P  L  L  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0037I08.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 113 chains have been computed
$ 
$ memory statistics:
$ 230192 bytes spliced alignments in total
$ 84 spliced alignments have been stored
$ 2740 bytes was the average size of a spliced alignment
$ 26160 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1538 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 124 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:46:56
-->
