<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 08:29:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369023" ref_strand="+" ref_description="SGN-E369023 [TUS-25-H9](-)">
      <seq>aaagaaatccaatgatagagaagaaatagcagaaattgagaagatgcatgctcttatgaaggaacataacttggatggtcaattcagatggatatcagcccaaatgaaccgggcacgtaatggtgagctctatcgctatatagctgacaagagaggtatatttgttcagcctgcgtattatgaagcgtttggactgacggtggttgaagctatgacttgtggtcttccaacatttgcaacttgtcatggtggacctatggagatcattcaggacggtgtatccgggtaccatatagatccttatcatcccaataaagctgctgagctcatggtagaattcttccaacgatgcgaacaaaatcctactcactgggaaaatatatctgcatctggcctacaaaggattctcgacaggtatacatggaaaatttactcggagaggctgatgactttggctggtgtatatggtttctggaagcttgtttcaaaactcgagaggcgtgaaactagacgatacctcgagatgttctacattctcaagttccgtgagttggtaaaatctgttcctctagcagttgatgagaagcagtgaggattttgcaaaggaataaataacgtggagcataccactctatctatgataattttttttttgttcttcttgtttgttgtgtagttaaactaattaagtgcactgagtttctaatagatctcaaatagctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="11574" stop="9997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11274" g_stop="11106" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11105" i_stop="11009" i_length="97">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11008" g_stop="10764" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="414" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10763" i_stop="10698" i_length="66">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10697" g_stop="10559" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="553" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10558" i_stop="10469" i_length="90">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10468" g_stop="10288" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="734" r_length="181" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E369023" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11274" e_stop="11106"/>
          <exon e_start="11008" e_stop="10764"/>
          <exon e_start="10697" e_stop="10559"/>
          <exon e_start="10468" e_stop="10288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAATCCAATGATAGAGAAGAAATAGCAGAAATTGAGAAGATGCATGCTCTTATGAAGGAACATAACTTGGATGGTCAATTCAGATGGATATCAGCCCAAATGAACCGGGCACGTAATGGTGAGCTCTATCGCTATATAGCTGACAAGAGAGGTATATTTGTTCAGGTATGATGCTTGTATCGTATTGTTTCGATCATCTCCACTTTCATTCTCCTAGAGGTAGGTGGTTATCATGAAAAATATATACATATCTTCCTTTTAGCCTGCGTATTATGAAGCGTTTGGACTGACGGTGGTTGAAGCTATGACTTGTGGTCTTCCAACATTTGCAACTTGTCATGGTGGACCTATGGAGATCATTCAGGACGGTGTATCCGGGTACCATATAGATCCTTATCATCCCAATAAAGCTGCTGAGCTCATGGTAGAATTCTTCCAACGATGCGAACAAAATCCTACTCACTGGGAAAATATATCTGCATCTGGCCTACAAAGGATTCTCGACAGGTTTGTAGTTGTATATATTTGAATGGAAGCATTGCTCACTTTCTAATATTCAAACCATATTTAAAGGTATACATGGAAAATTTACTCGGAGAGGCTGATGACTTTGGCTGGTGTATATGGTTTCTGGAAGCTTGTTTCAAAACTCGAGAGGCGTGAAACTAGACGATACCTCGAGATGTTCTACATTCTCAAGTTCCGTGAGTTGGTGAGGTCCTTTTCAGCTCATATTCAATCAAAATAGAAATGCAGTTCAAGTGGTATATATACGCCGCTTAAACATGTCTCCTTTTTCCAGGTAAAATCTGTTCCTCTAGCAGTTGATGAGAAGCAGTGAGGATTTTGCAAAGGAATAAATAACGTGGAGCATACCACTCTATCTATGATAATTTTTTTTTTGTTCTTCTTGTTTGTTGTGTAGTTAAACTAATTAAGTGCACTGAGTTTCTAATAGATCTCAAATAGCTAAACGTTACTAT</genome_strand>
        <mrna_strand>AAAGAAATCCAATGATAGAGAAGAAATAGCAGAAATTGAGAAGATGCATGCTCTTATGAAGGAACATAACTTGGATGGTCAATTCAGATGGATATCAGCCCAAATGAACCGGGCACGTAATGGTGAGCTCTATCGCTATATAGCTGACAAGAGAGGTATATTTGTTCAG.................................................................................................CCTGCGTATTATGAAGCGTTTGGACTGACGGTGGTTGAAGCTATGACTTGTGGTCTTCCAACATTTGCAACTTGTCATGGTGGACCTATGGAGATCATTCAGGACGGTGTATCCGGGTACCATATAGATCCTTATCATCCCAATAAAGCTGCTGAGCTCATGGTAGAATTCTTCCAACGATGCGAACAAAATCCTACTCACTGGGAAAATATATCTGCATCTGGCCTACAAAGGATTCTCGACAG..................................................................GTATACATGGAAAATTTACTCGGAGAGGCTGATGACTTTGGCTGGTGTATATGGTTTCTGGAAGCTTGTTTCAAAACTCGAGAGGCGTGAAACTAGACGATACCTCGAGATGTTCTACATTCTCAAGTTCCGTGAGTTG..........................................................................................GTAAAATCTGTTCCTCTAGCAGTTGATGAGAAGCAGTGAGGATTTTGCAAAGGAATAAATAACGTGGAGCATACCACTCTATCTATGATAATTTTTTTTTTGTTCTTCTTGTTTGTTGTGTAGTTAAACTAATTAAGTGCACTGAGTTTCTAATAGATCTCAAATAGCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624387" ref_strand="+" ref_description="SGN-E624387 [GI|29289942]">
      <seq>gaattcggctgagacatatcaatgtcgaatccaaagttcacaagagtacctagtatgagagagagagttgaggatactctatctgctcaccgtaatcagctagtggctcttctatcgagatatgtggcgcaggggaaggggatattgcaacctcatcacttaattgatgagttcaatagtgctgtatgtgatgacactgcttgtgaaaagctcaaagaaggccccttttgtgaaatcttgaaatctactcaggaagccattgtgctcccaccatttgttgctatagcagttcgtccaaggccaggtgtttgggaatatgttcgtgttaacgtatatgatctgagtgttgaacaattgactattcctgaatatctccgtttcaaagaagaacttgtggatggagaggataataatctctttgtgcttgagctggattttgaaccatttaatgcatcagttcctcgtccatcacgctcttcatccattggaaatggagtccaattcctcaatcgtcatttgtcctcaaatatgtttcgcagcaaagaatctctcgacccgttacttgatttccttagaggacacaatcataaagggaatgtcttgatgttgaatgaacgtatacagcgaatctccaggctggagtcgtctcttaataaagcagatgattatctctcaaagctaccaccagatacaccctatactgagtttgaatatgcattgcaagaaatgggctttgagaaaggttggggtgatactgcaaaacgtgttttggagactatgcatctgctttctgacattcttcaggctcctgatccctcaaccttggagacttttcttggtagattaccaatggtgttcaatgttgtcatattatctcctcatggatactttggtcaagcaaatgtcttgggtttgccggacactggtggacaggttgtctatatactggatcaagtgcgtgctttggaggccgaaatgctccttagaataaagcaacaaggactcaacttcaagcctaaaatccttgttgtcacccgactgatacctgatgctaaaggaaccacgtgcaaccagcggttggagagaattagtggaactgaatactcacatattttacgtgtcccttttaggacagaaaatggaatccttcataaatggatatctaggtttgatgtatggccttacctggagaagtttactgaggacgtggcaggtgaaatgtctgctgagctccagggagtacccgatctgattattggcaactacagtgatggaaatttagttgcttccctgttagcatataaaatgggcgtcacacagtgtaccattgctcatgctttggagaaaacaaagtatcctgattctgacatctattggaaaaagtttgaggagaaatatcatttttcatgtcagtttactgctgatctactgtcaatgaatcattcagatttcataatcactagtacctatcaagagattgcaggaacgaagaatactgttggtcagtatgagagtcatactgctttcactctcccaggcctatatcgtgttgtccatggcattgatgttttcgatcccaaattcaatatagtgtctcctggagctgacatgacaatttacttcccatattctgacaaggaaaagagactgacatctttgcatccctcgattgagaagttgttatttgatcctgagcagaatgaagtgcatataggcaacctgaatgatcaatcaaaaccgataattttttcaatggcaaggcttgaccgggtcaagaacattacgggattagttgagtgctatgctaaaaatgccacactcagggaattggcaaaccttgttgtagtagctggatacaacgatgtaaagaaatccaatgatagagaagaaatagcagaaattgagaagatgcatgctcttatgaaggaacataacttggatggtcaattcagatggatatcagcccaaatgaaccgggcacgtaatggtgagctctatcgctatatagctgacaagagaggtatatttgttcagcctgcattttatgaagcgtttggactcacggtggttgaagctatgacttgtggtcttccaacatttgcaacttgtcatggtggtcctatggagatcattcaggacggtgtatccgggtaccatatagatccttatcatcccaataaagctgctgagctcatggtagaattcttccaacgatgtgaacaaaatcctactcactgggaaaatatatctgcatctggcctacaaaggattctcgacaggtatacatggaaaatttactcggagaggctgatgactttggctggtgtatatggtttctggaagcttgtttcaaaactcgagaggcgtgaaactagacgatacctcgagatgttctacattctcaagttccgcgagttggtaaaatctgttcctctagcaattgatgacaagcactgagcaatgatggtgcaagcatcggaggattttgcaaagaaataataacgtggattgagaagagcagctagttaaatgaagacataaatgttgtgtaaaaaaaaagcaatgtgctgcctcagtgggggtggctgatatgcactctatgatcatgtttttatcttcttgttgtagttaaactaatgtgcactcagtttttacttggttaaaaagttgtagcggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="15924" stop="10125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15624" g_stop="15526" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="119" r_length="99" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15525" i_stop="15445" i_length="81">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.816" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15444" g_stop="15312" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="252" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15311" i_stop="15242" i_length="70">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15241" g_stop="15090" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="404" r_length="152" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15089" i_stop="15023" i_length="67">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.928" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15022" g_stop="14827" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="597" r_length="193" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14826" i_stop="14650" i_length="177">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14649" g_stop="14531" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="716" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14530" i_stop="14434" i_length="97">
            <donor d_prob="0.826" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="14433" g_stop="14217" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="933" r_length="217" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="14216" i_stop="13735" i_length="482">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13734" g_stop="13639" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="934" r_stop="1029" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13638" i_stop="13556" i_length="83">
            <donor d_prob="0.511" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13555" g_stop="13382" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1030" r_stop="1203" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="13381" i_stop="13071" i_length="311">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.106" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13070" g_stop="12954" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1204" r_stop="1320" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="12953" i_stop="12856" i_length="98">
            <donor d_prob="0.857" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="12855" g_stop="12689" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1321" r_stop="1487" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="12688" i_stop="11933" i_length="756">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.169" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="11932" g_stop="11708" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1488" r_stop="1712" r_length="225" r_score="0.987"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="11707" i_stop="11428" i_length="280">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="11427" g_stop="11106" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1713" r_stop="2034" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="11105" i_stop="11009" i_length="97">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="11008" g_stop="10764" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="2035" r_stop="2279" r_length="245" r_score="0.980"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="10763" i_stop="10698" i_length="66">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="10697" g_stop="10559" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="2280" r_stop="2418" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="10558" i_stop="10469" i_length="90">
            <donor d_prob="0.685" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="10468" g_stop="10428" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="2419" r_stop="2459" r_length="41" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E624387" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>2442</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15624" e_stop="15526"/>
          <exon e_start="15444" e_stop="15312"/>
          <exon e_start="15241" e_stop="15090"/>
          <exon e_start="15022" e_stop="14827"/>
          <exon e_start="14649" e_stop="14531"/>
          <exon e_start="14433" e_stop="14217"/>
          <exon e_start="13734" e_stop="13639"/>
          <exon e_start="13555" e_stop="13382"/>
          <exon e_start="13070" e_stop="12954"/>
          <exon e_start="12855" e_stop="12689"/>
          <exon e_start="11932" e_stop="11708"/>
          <exon e_start="11427" e_stop="11106"/>
          <exon e_start="11008" e_stop="10764"/>
          <exon e_start="10697" e_stop="10559"/>
          <exon e_start="10468" e_stop="10428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCGAATCCAAAGTTGTCAAGAATACCTAGTATGAGAGAGAGAGTTGAGGATACTCTCTCTGCTCACCGTAATCAGCTAGTGGCTCTCCTATCCAGGTAGGTACTAATTTGGAGATTTTTCTTTTTTGATAAATTAGTTGAGAAAATTTGGAGATTTATTTAAAAAAAAAACAAAAGATATGTGGCGCAGGGGAAGGGGATATTGCAGCCTCATCATTTAATTGATGAGCTGAATAATGCTGTATGTGATGACACTGCTTGTGAAAAGCTGAAAGAAGGCCCCTTTTGTGAAATCTTGAAATCTACTCAGGTTGTTTCATTTGATTTTCTGTTCAGAATTTAAACATCGAAATTCGTTTACCTGACATCAAAATATATAGGAAGCCATTGTGCTCCCACCATTTGTTGCTATAGCAGTTCGTCCAAGGCCAGGTGTTTGGGAATATGTTCGTGTGAACGTATATGATCTGAGCGTTGAACAATTGACGGTTCCTGAATATCTCCGTTTCAAAGAAGAACTTGTCGATGGAGAGTAAGTGTTGTATTGCAAATATGTTACATAGGAAACTTGCACAAGTTTACCTTGGTTTCAACTGTAGGGATCATAATCATCTTTTTGTGCTTGAGCTGGATTTTGAGCCATTTAATGCATCAGTTCCTCGTCCCTCACGCTCTTCATCCATTGGAAATGGAGTACAATTCCTCAATCGTCATTTGTCCTCAAATATGTTTCGCAGCAACGAATCCCTCGACCCATTACTTGATTTCCTTAGAGGACACAATCATAAAGGGAATGTAAGTACCCTGACCGGTTTTTCCTAATTCTGCTTATCCCTGATTGTCTCGGTACGTGCAACCATTATCCGCTATTCTACTTGTATTGCTGGACACCATTACTTTATTGTTTTTCCCACTTGTTCATCTAACTGTTCAACTACTTCTATTTGTAAGATGGATTCTCTATCTACGCAGGTCTTGATGTTGAATGAACGTATACAGCGAATCTCCAGGCTGGAGTCGTCTCTTAATAAGGCAGATGATTATCTCTCAAAGCTACCACCAGATACACCCTATACTGACTTTGAATATGCGTGAGTTTGTACATATTTGTTTTGTCTTCTTACAAGTGTAAGAAAATTAAAGATATATAGGAGCTGAAATCTTGTTCATGGAACCATGTGGATGCAGATTGCAGGAAATGGGCTTTGAGAAAGGTTGGGGTGATACTGCAAATCGTGTTTTGGAGACTATGCATCTGCTTTCTGACATTCTTCAGGCTCCTGATCCCTCAACCTTAGAGACTTTTCTTGGTAGATTACCAATGGTGTTTAATGTTGTCATATTATCTCCTCATGGATACTTTGGTCAAGCAAATGTCTTGGGTTTGCCGGACACTGGTGGACAGGTAATAACAAGGTGAAAGGGGTCTTGTATTATGTAAACTCGTTTGCATACAACTCCAATTTTTTTTCAGCATATTCCCTTTAAACAGTTATCTATCATCTACTTCATCTTCCCCACAAACATTGTCACCTAGCTTTTCCTACAATCTGAAGAACTGGAGGAAAAAAAAAAGAATTATCTTATCTTCTATTTAGTATTAACGGAGAAGACTTATCTTTGTTGGAAATTCTGATTCTTACATTTGGTTTATTTCCTCTTCTTGCAAATTATACTGCTGAATCATCCTGAGATATGCCAGTTTACTTTGGATGTAAAGGTTAATACGGGACCACTCAGTTCTTTCTTGCAGTAGACTTGAGCAGGCACACTCTATTGCAGTTGATATATTTCGTATAATCTTGCAGAAGCTAGAGCAGTGTTGTAATGTTACTGAAGTTTCATCCATGGTTTCCTTGAATTTGTTCTCCTTTTGGTGATTCACAGGTTGTCTATATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTTCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAGAATCCTTGTTGTGAGTACATGTATGTTATGCAAACTCTAATTTGGTTTCTGGGATTGTATTTGACATAAATATGCTTTCTTTGATTGCAAAAGGTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCGCATATTTTACGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAGGTAACCTCTTTGTCTTTTGGAAATCACCGTTTGTTGCTGATGTTTGTTCAGTGTGCTAAAGTGAACGATGGCAACTAGTACAAATTGTGCGAACTTGAAGCCAACTGTTGTGTTTGCCAACATGTTGATAAATGGATAACTTTTGGTCATCATTTACATTTTTTGGTTTAACATACTGGATAACACACTTCTCGTGTCTTCCTGCGTATATATATTGGAAAATGACAATACTCGCCCTTCTATAATTTTTTAGGACCTTTCTGTGTACGGTAAATTTCCCAGCTGACATTTCCAAGTCAATTCTTGACCAGGACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTGCCTGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCTGTTAGCATATAAAATGGGCATCACACAGGTAGGAAAGACGTGATTATTTACCTGGCTAGCACAATGTCTTGAGGCTGTGTATCTGCAATACTAATTTAATACTTTTCTGCCACCTTTATTTCCCAGTGTACCATTGCTCATGCTTTGGAGAAAACAAAGTATCCTGATTCTGACATCTATTGGAAAAAGTTTGAGGAGAAATATCATTTTTCATGTCAGTTTACTGCTGACCTACTGTCAATGAATCATTCAGATTTCATAATCACTAGTACCTATCAAGAGATTGCAGGAACGTAAGTCATCTTAATTTGGCCCTGATTTTTTATTGAGTCCATTTTTAATTCAATAGCATGATTTGAGGAACTGTGATTGGTAACCTTGTCATATCTGTGAATTGTTCCACAATTTTATTTGTTATTGAAGAAACGATTTGAGCTTGTAATCAGATATAATTTGTCATGTTTGAGCTAGAACTTGTTTCATTATCTGTCGAGAGGATGATACTGTAACTATATTTTGTGTGTGGCAATTTACATTTCATCCGTCTATTTTTTATATATGTTTGGGCTTTTCTTCCTGCTGATCATGTTTACATGGCTGAAACTCAAAAAAGATATATGAACGCCTAGTTGATATTGTTGGATGCTTAAGAATCAGTAGATGTTTTGCTCCATGAATGACTAATGTTAATAAATAACAAGTGATATATATAGATGTGAATCATCTTGTAAGCAAGCGAAAAATGAACAGAAAAATGTAACATCCTCAATGGATTGTTCTGACTTGTAAAAAATTGTATCTAGAAATTGTTTCAGCTTGTAACCATATGTATGATGTTCCATACGGATGTGAACATTGATGTGCCATCGATCATGATCTGGATACTGAATCCTATATTGTAAACAATTTGGCTTGGCCATAATATTGTCTTTATAGTTCACGCAGATTGCTTAATTACACCACTATGTTTTACACGTTTAATATTCATGCGGCATAATGATGTTAAACATTAGATGGCTTGCTTGGAATCTGATAGCGGCTTGTTTCAGGAAGAATACTGTTGGTCAGTACGAGAGTCATACTGCTTTCACTCTCCCAGGCCTATATCGTGTTGTCCATGGCATTGATGTCTTCGATCCCAAATTCAATATAGTGTCTCCTGGAGCTGACATGACAATTTACTTCCCATATTTTGACAAGGAAAAGAGACTGACATCTTTGCATCCCTCGATTGAGAAGTTGTTATTTGATCCTGAGCAGAATGAAGTGCATATGTAAGTGGCCATTCATGTAAACTAATAATTTGGAATATATATATAATGATTTGTATAAAATGAACCCAACACCGCTACATTAGAAAAGGAGGGCCTGATATGATTATCCACAAATGAACTCCTTATATTTGCTCACACTGCCCTGGATATTGAAAGAGAGGAAGTACCACATATAATATTGTATTGATTTTTTGCTCTTTGCTTCTGATGGGCAGTTTTTTGTGATCAGTAAATTGACCATTGATTGATGTCATTACCTTTTTTTCTTTTTTAATTACAGAGGCAGCCTGAATGATCAATCAAAACCGATAATTTTTTCAATGGCAAGGCTTGACCGGGTAAAGAACATTACCGGATTAGTTGAGTGCTATGCTAAAAATGCCACACTCAGGGAACTGGCTAACCTTGTTGTAGTAGCTGGATACAACGATGTAAAGAAATCCAATGATAGAGAAGAAATAGCAGAAATTGAGAAGATGCATGCTCTTATGAAGGAACATAACTTGGATGGTCAATTCAGATGGATATCAGCCCAAATGAACCGGGCACGTAATGGTGAGCTCTATCGCTATATAGCTGACAAGAGAGGTATATTTGTTCAGGTATGATGCTTGTATCGTATTGTTTCGATCATCTCCACTTTCATTCTCCTAGAGGTAGGTGGTTATCATGAAAAATATATACATATCTTCCTTTTAGCCTGCGTATTATGAAGCGTTTGGACTGACGGTGGTTGAAGCTATGACTTGTGGTCTTCCAACATTTGCAACTTGTCATGGTGGACCTATGGAGATCATTCAGGACGGTGTATCCGGGTACCATATAGATCCTTATCATCCCAATAAAGCTGCTGAGCTCATGGTAGAATTCTTCCAACGATGCGAACAAAATCCTACTCACTGGGAAAATATATCTGCATCTGGCCTACAAAGGATTCTCGACAGGTTTGTAGTTGTATATATTTGAATGGAAGCATTGCTCACTTTCTAATATTCAAACCATATTTAAAGGTATACATGGAAAATTTACTCGGAGAGGCTGATGACTTTGGCTGGTGTATATGGTTTCTGGAAGCTTGTTTCAAAACTCGAGAGGCGTGAAACTAGACGATACCTCGAGATGTTCTACATTCTCAAGTTCCGTGAGTTGGTGAGGTCCTTTTCAGCTCATATTCAATCAAAATAGAAATGCAGTTCAAGTGGTATATATACGCCGCTTAAACATGTCTCCTTTTTCCAGGTAAAATCTGTTCCTCTAGCAGTTGATGAGAAGCAGTGAGG</genome_strand>
        <mrna_strand>AATGTCGAATCCAAAGTTCACAAGAGTACCTAGTATGAGAGAGAGAGTTGAGGATACTCTATCTGCTCACCGTAATCAGCTAGTGGCTCTTCTATCGAG.................................................................................ATATGTGGCGCAGGGGAAGGGGATATTGCAACCTCATCACTTAATTGATGAGTTCAATAGTGCTGTATGTGATGACACTGCTTGTGAAAAGCTCAAAGAAGGCCCCTTTTGTGAAATCTTGAAATCTACTCAG......................................................................GAAGCCATTGTGCTCCCACCATTTGTTGCTATAGCAGTTCGTCCAAGGCCAGGTGTTTGGGAATATGTTCGTGTTAACGTATATGATCTGAGTGTTGAACAATTGACTATTCCTGAATATCTCCGTTTCAAAGAAGAACTTGTGGATGGAGA...................................................................GGATAATAATC-TC--TTTGTGCTTGAGCTGGATTTTGAACCATTTAATGCATCAGTTCCTCGTCCATCACGCTCTTCATCCATTGGAAATGGAGTCCAATTCCTCAATCGTCATTTGTCCTCAAATATGTTTCGCAGCAAAGAATCTCTCGACCCGTTACTTGATTTCCTTAGAGGACACAATCATAAAGGGAAT.................................................................................................................................................................................GTCTTGATGTTGAATGAACGTATACAGCGAATCTCCAGGCTGGAGTCGTCTCTTAATAAAGCAGATGATTATCTCTCAAAGCTACCACCAGATACACCCTATACTGAGTTTGAATATGC.................................................................................................ATTGCAAGAAATGGGCTTTGAGAAAGGTTGGGGTGATACTGCAAAACGTGTTTTGGAGACTATGCATCTGCTTTCTGACATTCTTCAGGCTCCTGATCCCTCAACCTTGGAGACTTTTCTTGGTAGATTACCAATGGTGTTCAATGTTGTCATATTATCTCCTCATGGATACTTTGGTCAAGCAAATGTCTTGGGTTTGCCGGACACTGGTGGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTATATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTCCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAAAATCCTTGTT...................................................................................GTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCACATATTTTACGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAG.......................................................................................................................................................................................................................................................................................................................GACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTACCCGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCTTCCCTGTTAGCATATAAAATGGGCGTCACACAG..................................................................................................TGTACCATTGCTCATGCTTTGGAGAAAACAAAGTATCCTGATTCTGACATCTATTGGAAAAAGTTTGAGGAGAAATATCATTTTTCATGTCAGTTTACTGCTGATCTACTGTCAATGAATCATTCAGATTTCATAATCACTAGTACCTATCAAGAGATTGCAGGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATACTGTTGGTCAGTATGAGAGTCATACTGCTTTCACTCTCCCAGGCCTATATCGTGTTGTCCATGGCATTGATGTTTTCGATCCCAAATTCAATATAGTGTCTCCTGGAGCTGACATGACAATTTACTTCCCATATTCTGACAAGGAAAAGAGACTGACATCTTTGCATCCCTCGATTGAGAAGTTGTTATTTGATCCTGAGCAGAATGAAGTGCATAT........................................................................................................................................................................................................................................................................................AGGCAACCTGAATGATCAATCAAAACCGATAATTTTTTCAATGGCAAGGCTTGACCGGGTCAAGAACATTACGGGATTAGTTGAGTGCTATGCTAAAAATGCCACACTCAGGGAATTGGCAAACCTTGTTGTAGTAGCTGGATACAACGATGTAAAGAAATCCAATGATAGAGAAGAAATAGCAGAAATTGAGAAGATGCATGCTCTTATGAAGGAACATAACTTGGATGGTCAATTCAGATGGATATCAGCCCAAATGAACCGGGCACGTAATGGTGAGCTCTATCGCTATATAGCTGACAAGAGAGGTATATTTGTTCAG.................................................................................................CCTGCATTTTATGAAGCGTTTGGACTCACGGTGGTTGAAGCTATGACTTGTGGTCTTCCAACATTTGCAACTTGTCATGGTGGTCCTATGGAGATCATTCAGGACGGTGTATCCGGGTACCATATAGATCCTTATCATCCCAATAAAGCTGCTGAGCTCATGGTAGAATTCTTCCAACGATGTGAACAAAATCCTACTCACTGGGAAAATATATCTGCATCTGGCCTACAAAGGATTCTCGACAG..................................................................GTATACATGGAAAATTTACTCGGAGAGGCTGATGACTTTGGCTGGTGTATATGGTTTCTGGAAGCTTGTTTCAAAACTCGAGAGGCGTGAAACTAGACGATACCTCGAGATGTTCTACATTCTCAAGTTCCGCGAGTTG..........................................................................................GTAAAATCTGTTCCTCTAGCAATTGATGACAAGCACTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369024" ref_strand="+" ref_description="SGN-E369024 [TUS-25-H9]">
      <seq>tatactggatcaagtgcgtgctttggaggccgaaatgcttcttagaataaagcaacaaggactcaacttcaagcctagaatccttgttgtcacccgactgatacctgatgctaaaggaaccacgtgcaaccagcggttggagagaattagtggaactgaatactcgcatattttacgtgtcccttttaggacagaaaatggaatccttcataaatggatatctaggtttgatgtatggccttacctggagaagtttactgaggacgtggcaggtgaaatgtctgctgagctccagggagtgcctgatctgattattggcaactacagtgatggaaatttagttgcctccctgttagcatataaaatgggcatcacacagtgtaccattgctcatgctttggagaaaacaaagtatcctgattctgacatctattggaaaaagtttgaggagaaatatcatttttcatgtcagtttactgctgacctactgtcaatgaatcattcagatttcataatcactagtacctatcaagagattgcaggaacgaagaatactgttggtcagtacgagagtcatactgctttcactctcccaggcctatatcgtgttgtccatggcattgatgtcttcgatcccaaattcaatatagtgtctcctggagctgacatgacaatttacttccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="14026" stop="11494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13726" g_stop="13639" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13638" i_stop="13556" i_length="83">
            <donor d_prob="0.511" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13555" g_stop="13382" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="262" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13381" i_stop="13071" i_length="311">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.106" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13070" g_stop="12954" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="379" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12953" i_stop="12856" i_length="98">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12855" g_stop="12689" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="546" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12688" i_stop="11933" i_length="756">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.169" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11932" g_stop="11794" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="685" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E369024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13726" e_stop="13639"/>
          <exon e_start="13555" e_stop="13382"/>
          <exon e_start="13070" e_stop="12954"/>
          <exon e_start="12855" e_stop="12689"/>
          <exon e_start="11932" e_stop="11794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTTCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAGAATCCTTGTTGTGAGTACATGTATGTTATGCAAACTCTAATTTGGTTTCTGGGATTGTATTTGACATAAATATGCTTTCTTTGATTGCAAAAGGTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCGCATATTTTACGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAGGTAACCTCTTTGTCTTTTGGAAATCACCGTTTGTTGCTGATGTTTGTTCAGTGTGCTAAAGTGAACGATGGCAACTAGTACAAATTGTGCGAACTTGAAGCCAACTGTTGTGTTTGCCAACATGTTGATAAATGGATAACTTTTGGTCATCATTTACATTTTTTGGTTTAACATACTGGATAACACACTTCTCGTGTCTTCCTGCGTATATATATTGGAAAATGACAATACTCGCCCTTCTATAATTTTTTAGGACCTTTCTGTGTACGGTAAATTTCCCAGCTGACATTTCCAAGTCAATTCTTGACCAGGACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTGCCTGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCTGTTAGCATATAAAATGGGCATCACACAGGTAGGAAAGACGTGATTATTTACCTGGCTAGCACAATGTCTTGAGGCTGTGTATCTGCAATACTAATTTAATACTTTTCTGCCACCTTTATTTCCCAGTGTACCATTGCTCATGCTTTGGAGAAAACAAAGTATCCTGATTCTGACATCTATTGGAAAAAGTTTGAGGAGAAATATCATTTTTCATGTCAGTTTACTGCTGACCTACTGTCAATGAATCATTCAGATTTCATAATCACTAGTACCTATCAAGAGATTGCAGGAACGTAAGTCATCTTAATTTGGCCCTGATTTTTTATTGAGTCCATTTTTAATTCAATAGCATGATTTGAGGAACTGTGATTGGTAACCTTGTCATATCTGTGAATTGTTCCACAATTTTATTTGTTATTGAAGAAACGATTTGAGCTTGTAATCAGATATAATTTGTCATGTTTGAGCTAGAACTTGTTTCATTATCTGTCGAGAGGATGATACTGTAACTATATTTTGTGTGTGGCAATTTACATTTCATCCGTCTATTTTTTATATATGTTTGGGCTTTTCTTCCTGCTGATCATGTTTACATGGCTGAAACTCAAAAAAGATATATGAACGCCTAGTTGATATTGTTGGATGCTTAAGAATCAGTAGATGTTTTGCTCCATGAATGACTAATGTTAATAAATAACAAGTGATATATATAGATGTGAATCATCTTGTAAGCAAGCGAAAAATGAACAGAAAAATGTAACATCCTCAATGGATTGTTCTGACTTGTAAAAAATTGTATCTAGAAATTGTTTCAGCTTGTAACCATATGTATGATGTTCCATACGGATGTGAACATTGATGTGCCATCGATCATGATCTGGATACTGAATCCTATATTGTAAACAATTTGGCTTGGCCATAATATTGTCTTTATAGTTCACGCAGATTGCTTAATTACACCACTATGTTTTACACGTTTAATATTCATGCGGCATAATGATGTTAAACATTAGATGGCTTGCTTGGAATCTGATAGCGGCTTGTTTCAGGAAGAATACTGTTGGTCAGTACGAGAGTCATACTGCTTTCACTCTCCCAGGCCTATATCGTGTTGTCCATGGCATTGATGTCTTCGATCCCAAATTCAATATAGTGTCTCCTGGAGCTGACATGACAATTTACTTCCCA</genome_strand>
        <mrna_strand>TATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTTCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAGAATCCTTGTT...................................................................................GTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCGCATATTTTACGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAG.......................................................................................................................................................................................................................................................................................................................GACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTGCCTGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCTGTTAGCATATAAAATGGGCATCACACAG..................................................................................................TGTACCATTGCTCATGCTTTGGAGAAAACAAAGTATCCTGATTCTGACATCTATTGGAAAAAGTTTGAGGAGAAATATCATTTTTCATGTCAGTTTACTGCTGACCTACTGTCAATGAATCATTCAGATTTCATAATCACTAGTACCTATCAAGAGATTGCAGGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATACTGTTGGTCAGTACGAGAGTCATACTGCTTTCACTCTCCCAGGCCTATATCGTGTTGTCCATGGCATTGATGTCTTCGATCCCAAATTCAATATAGTGTCTCCTGGAGCTGACATGACAATTTACTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249036" ref_strand="+" ref_description="SGN-E249036 [cLEF-49-G4]">
      <seq>ctggatcaagtgccgtgcctttggagggccaaatgcttcttagaataaagcaacaagggactcaacttcaagcctagaatccttgttgtcacccgactgatacctgatgctaaaggaaccacgtgcaaccagcggttggagagaattagtggaacctgaatacctcgcatattttaccgtgtcccttttaggaaagaaaatggaatccttcataaatggatatctaggtttgatgtatggccttacctggagaagtttactgaggacgtggcaggtgaaatgtctgctgagctccagggagtgcctgatctgattattggcaactacagtgatggaaatttagttgcctccctgttagcatataaaatgggcatcacacagtgtaccattgctcatgcctttggagaaaacaaagtatcctgattctgacatctattggaaaaagtttgaggagaaatatcatttttcatgtcagtttactgctgacctactgtcaatgaatcattcagatttcataatcactagtacctatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="14022" stop="12402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13722" g_stop="13639" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13638" i_stop="13556" i_length="83">
            <donor d_prob="0.511" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13555" g_stop="13382" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="264" r_length="177" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13381" i_stop="13071" i_length="311">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.106" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13070" g_stop="12954" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="381" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12953" i_stop="12856" i_length="98">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12855" g_stop="12702" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="536" r_length="155" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E249036" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13722" e_stop="13639"/>
          <exon e_start="13555" e_stop="13382"/>
          <exon e_start="13070" e_stop="12954"/>
          <exon e_start="12855" e_stop="12702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATCAAGTG-CGTG-CTTTGGAGGCCGAAATGCTTCTTAGAATAAAGCAACAA-GGACTCAACTTCAAGCCTAGAATCCTTGTTGTGAGTACATGTATGTTATGCAAACTCTAATTTGGTTTCTGGGATTGTATTTGACATAAATATGCTTTCTTTGATTGCAAAAGGTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAA-CTGAATA-CTCGCATATTTTA-CGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAGGTAACCTCTTTGTCTTTTGGAAATCACCGTTTGTTGCTGATGTTTGTTCAGTGTGCTAAAGTGAACGATGGCAACTAGTACAAATTGTGCGAACTTGAAGCCAACTGTTGTGTTTGCCAACATGTTGATAAATGGATAACTTTTGGTCATCATTTACATTTTTTGGTTTAACATACTGGATAACACACTTCTCGTGTCTTCCTGCGTATATATATTGGAAAATGACAATACTCGCCCTTCTATAATTTTTTAGGACCTTTCTGTGTACGGTAAATTTCCCAGCTGACATTTCCAAGTCAATTCTTGACCAGGACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTGCCTGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCTGTTAGCATATAAAATGGGCATCACACAGGTAGGAAAGACGTGATTATTTACCTGGCTAGCACAATGTCTTGAGGCTGTGTATCTGCAATACTAATTTAATACTTTTCTGCCACCTTTATTTCCCAGTGTACCATTGCTCATG-CTTTGGAGAAAACAAAGTATCCTGATTCTGACATCTATTGGAAAAAGTTTGAGGAGAAATATCATTTTTCATGTCAGTTTACTGCTGACCTACTGTCAATGAATCATTCAGATTTCATAATCACTAGTACCTATCAAG</genome_strand>
        <mrna_strand>CTGGATCAAGTGCCGTGCCTTTGGAGGGCCAAATGCTTCTTAGAATAAAGCAACAAGGGACTCAACTTCAAGCCTAGAATCCTTGTT...................................................................................GTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACCTGAATACCTCGCATATTTTACCGTGTCCCTTTTAGGAAAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAG.......................................................................................................................................................................................................................................................................................................................GACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTGCCTGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCTGTTAGCATATAAAATGGGCATCACACAG..................................................................................................TGTACCATTGCTCATGCCTTTGGAGAAAACAAAGTATCCTGATTCTGACATCTATTGGAAAAAGTTTGAGGAGAAATATCATTTTTCATGTCAGTTTACTGCTGACCTACTGTCAATGAATCATTCAGATTTCATAATCACTAGTACCTATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454966" ref_strand="+" ref_description="SGN-E454966 [cSTS-24-L24]">
      <seq>caaatatgtttcgcagcaaagaatctctcgacccgttacttgatttccttagaggacacaatcataaagggaatatcttgatgttgaatgaacgtatacagcgaatctccaggctggagtcatctcttaataaagcagatgattatctttcaaagctaccagcagatacaccctatattgagtttgaatatgcattgcaagaaatgggctttgagaaaggttggggtgatactgcaaaacgtgttttggagactatgcatctgctttctgacattcttcaggctcctgatccctcaaccttggagacttttcttggtagattaccaatggtgttcaatgttgtcatattatctcctcatggatactttggtcaagcaaatgtcttgggtttgccggacactggtggacaggttgtctatatactggatcaagtgcgtgctttggaggccgaaatgctccttagaataaagcaacaaggactcaacttcaagcctagaatccttgttgtcacccgactgatacctgatgctaaaggaaccacgtgcagccagcggttggagagaattagtggaactgaatactcacatattttacgtgtcccttttaggacagaaaatggaatccttcataaatggatatctaggtttgatgtatggccttacctgnagaagtttactgaggacgtggcangtgaaatgtctgctgagctccagggagtacccgatctgattattggcaactacagtgatggaaatttagttgcctccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="15200" stop="12682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14900" g_stop="14827" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14826" i_stop="14650" i_length="177">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14649" g_stop="14531" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="193" r_length="119" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14530" i_stop="14434" i_length="97">
            <donor d_prob="0.826" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14433" g_stop="14217" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="410" r_length="217" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14216" i_stop="13735" i_length="482">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13734" g_stop="13639" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="506" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13638" i_stop="13556" i_length="83">
            <donor d_prob="0.511" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13555" g_stop="13382" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="680" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13381" i_stop="13071" i_length="311">
            <donor d_prob="0.868" d_score="0.98"/>
            <acceptor a_prob="0.106" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13070" g_stop="12982" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="769" r_length="89" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E454966" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14900" e_stop="14827"/>
          <exon e_start="14649" e_stop="14531"/>
          <exon e_start="14433" e_stop="14217"/>
          <exon e_start="13734" e_stop="13639"/>
          <exon e_start="13555" e_stop="13382"/>
          <exon e_start="13070" e_stop="12982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATATGTTTCGCAGCAACGAATCCCTCGACCCATTACTTGATTTCCTTAGAGGACACAATCATAAAGGGAATGTAAGTACCCTGACCGGTTTTTCCTAATTCTGCTTATCCCTGATTGTCTCGGTACGTGCAACCATTATCCGCTATTCTACTTGTATTGCTGGACACCATTACTTTATTGTTTTTCCCACTTGTTCATCTAACTGTTCAACTACTTCTATTTGTAAGATGGATTCTCTATCTACGCAGGTCTTGATGTTGAATGAACGTATACAGCGAATCTCCAGGCTGGAGTCGTCTCTTAATAAGGCAGATGATTATCTCTCAAAGCTACCACCAGATACACCCTATACTGACTTTGAATATGCGTGAGTTTGTACATATTTGTTTTGTCTTCTTACAAGTGTAAGAAAATTAAAGATATATAGGAGCTGAAATCTTGTTCATGGAACCATGTGGATGCAGATTGCAGGAAATGGGCTTTGAGAAAGGTTGGGGTGATACTGCAAATCGTGTTTTGGAGACTATGCATCTGCTTTCTGACATTCTTCAGGCTCCTGATCCCTCAACCTTAGAGACTTTTCTTGGTAGATTACCAATGGTGTTTAATGTTGTCATATTATCTCCTCATGGATACTTTGGTCAAGCAAATGTCTTGGGTTTGCCGGACACTGGTGGACAGGTAATAACAAGGTGAAAGGGGTCTTGTATTATGTAAACTCGTTTGCATACAACTCCAATTTTTTTTCAGCATATTCCCTTTAAACAGTTATCTATCATCTACTTCATCTTCCCCACAAACATTGTCACCTAGCTTTTCCTACAATCTGAAGAACTGGAGGAAAAAAAAAAGAATTATCTTATCTTCTATTTAGTATTAACGGAGAAGACTTATCTTTGTTGGAAATTCTGATTCTTACATTTGGTTTATTTCCTCTTCTTGCAAATTATACTGCTGAATCATCCTGAGATATGCCAGTTTACTTTGGATGTAAAGGTTAATACGGGACCACTCAGTTCTTTCTTGCAGTAGACTTGAGCAGGCACACTCTATTGCAGTTGATATATTTCGTATAATCTTGCAGAAGCTAGAGCAGTGTTGTAATGTTACTGAAGTTTCATCCATGGTTTCCTTGAATTTGTTCTCCTTTTGGTGATTCACAGGTTGTCTATATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTTCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAGAATCCTTGTTGTGAGTACATGTATGTTATGCAAACTCTAATTTGGTTTCTGGGATTGTATTTGACATAAATATGCTTTCTTTGATTGCAAAAGGTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCGCATATTTTACGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAGGTAACCTCTTTGTCTTTTGGAAATCACCGTTTGTTGCTGATGTTTGTTCAGTGTGCTAAAGTGAACGATGGCAACTAGTACAAATTGTGCGAACTTGAAGCCAACTGTTGTGTTTGCCAACATGTTGATAAATGGATAACTTTTGGTCATCATTTACATTTTTTGGTTTAACATACTGGATAACACACTTCTCGTGTCTTCCTGCGTATATATATTGGAAAATGACAATACTCGCCCTTCTATAATTTTTTAGGACCTTTCTGTGTACGGTAAATTTCCCAGCTGACATTTCCAAGTCAATTCTTGACCAGGACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTGCCTGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCT</genome_strand>
        <mrna_strand>CAAATATGTTTCGCAGCAAAGAATCTCTCGACCCGTTACTTGATTTCCTTAGAGGACACAATCATAAAGGGAAT.................................................................................................................................................................................ATCTTGATGTTGAATGAACGTATACAGCGAATCTCCAGGCTGGAGTCATCTCTTAATAAAGCAGATGATTATCTTTCAAAGCTACCAGCAGATACACCCTATATTGAGTTTGAATATGC.................................................................................................ATTGCAAGAAATGGGCTTTGAGAAAGGTTGGGGTGATACTGCAAAACGTGTTTTGGAGACTATGCATCTGCTTTCTGACATTCTTCAGGCTCCTGATCCCTCAACCTTGGAGACTTTTCTTGGTAGATTACCAATGGTGTTCAATGTTGTCATATTATCTCCTCATGGATACTTTGGTCAAGCAAATGTCTTGGGTTTGCCGGACACTGGTGGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTATATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTCCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAGAATCCTTGTT...................................................................................GTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAGCCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCACATATTTTACGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGNAGAAGTTTACTGAG.......................................................................................................................................................................................................................................................................................................................GACGTGGCANGTGAAATGTCTGCTGAGCTCCAGGGAGTACCCGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453687" ref_strand="+" ref_description="SGN-E453687 [cSTS-20-F18]">
      <seq>gaagaacttgtggatggagaggataataatctctttgtgcttgagctggattttgagccatttaatgcatcagttcctcgtccattcacgctcttcatccattggaaatggagtccaattcctcaatcgtcatttgtcctcaaatatgtttcgcagcaaagaatctctcgacccgttacttgatttccttagaggacacaatcataaagggaatgtcttgatgttgaatgaacgtatacagcgaatctccaggctggagtcgtctcttaataaagcagatgattatctctcaaagctaccaccagatacaccctatactgagtttgaatatgcattgcaagaaatgggctttgagaaaggttggggtgatactgcaaaacgtgttttggagactatgcatctgctttctgacattcttcaggctcctgatccctcaaccttggagacttttcttggtagattaccaatggtgttcaatgttgtcatattatctcctcatggatactttggtcaagcaaatgtcttgggtttgccggacactggtggacaggttgtctatatactggatcaagtgcgtgctttggaggccgaaatgctccttagaataaagcaacaaggactcaacttcaagcctagaaatccttgttgtcacccgactgatacctgatgctaaaggaaccacgtgcaaccagcggttggagaaaattagtggaactgaatactcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="15327" stop="13175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15109" g_stop="15090" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15089" i_stop="15023" i_length="67">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.928" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15022" g_stop="14827" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="214" r_length="194" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14826" i_stop="14650" i_length="177">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14649" g_stop="14531" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="333" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14530" i_stop="14434" i_length="97">
            <donor d_prob="0.826" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14433" g_stop="14217" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="550" r_length="217" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14216" i_stop="13735" i_length="482">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13734" g_stop="13639" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="647" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13638" i_stop="13556" i_length="83">
            <donor d_prob="0.511" d_score="0.94"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13555" g_stop="13475" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="728" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E453687" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15109" e_stop="15090"/>
          <exon e_start="15022" e_stop="14827"/>
          <exon e_start="14649" e_stop="14531"/>
          <exon e_start="14433" e_stop="14217"/>
          <exon e_start="13734" e_stop="13639"/>
          <exon e_start="13555" e_stop="13475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACTTGTCGATGGAGAGTAAGTGTTGTATTGCAAATATGTTACATAGGAAACTTGCACAAGTTTACCTTGGTTTCAACTGTAGGGATCATAATCATCTTTTTGTGCTTGAGCTGGATTTTGAGCCATTTAATGCATCAGTTCCTCGTCC-CTCACGCTCTTCATCCATTGGAAATGGAGTACAATTCCTCAATCGTCATTTGTCCTCAAATATGTTTCGCAGCAACGAATCCCTCGACCCATTACTTGATTTCCTTAGAGGACACAATCATAAAGGGAATGTAAGTACCCTGACCGGTTTTTCCTAATTCTGCTTATCCCTGATTGTCTCGGTACGTGCAACCATTATCCGCTATTCTACTTGTATTGCTGGACACCATTACTTTATTGTTTTTCCCACTTGTTCATCTAACTGTTCAACTACTTCTATTTGTAAGATGGATTCTCTATCTACGCAGGTCTTGATGTTGAATGAACGTATACAGCGAATCTCCAGGCTGGAGTCGTCTCTTAATAAGGCAGATGATTATCTCTCAAAGCTACCACCAGATACACCCTATACTGACTTTGAATATGCGTGAGTTTGTACATATTTGTTTTGTCTTCTTACAAGTGTAAGAAAATTAAAGATATATAGGAGCTGAAATCTTGTTCATGGAACCATGTGGATGCAGATTGCAGGAAATGGGCTTTGAGAAAGGTTGGGGTGATACTGCAAATCGTGTTTTGGAGACTATGCATCTGCTTTCTGACATTCTTCAGGCTCCTGATCCCTCAACCTTAGAGACTTTTCTTGGTAGATTACCAATGGTGTTTAATGTTGTCATATTATCTCCTCATGGATACTTTGGTCAAGCAAATGTCTTGGGTTTGCCGGACACTGGTGGACAGGTAATAACAAGGTGAAAGGGGTCTTGTATTATGTAAACTCGTTTGCATACAACTCCAATTTTTTTTCAGCATATTCCCTTTAAACAGTTATCTATCATCTACTTCATCTTCCCCACAAACATTGTCACCTAGCTTTTCCTACAATCTGAAGAACTGGAGGAAAAAAAAAAGAATTATCTTATCTTCTATTTAGTATTAACGGAGAAGACTTATCTTTGTTGGAAATTCTGATTCTTACATTTGGTTTATTTCCTCTTCTTGCAAATTATACTGCTGAATCATCCTGAGATATGCCAGTTTACTTTGGATGTAAAGGTTAATACGGGACCACTCAGTTCTTTCTTGCAGTAGACTTGAGCAGGCACACTCTATTGCAGTTGATATATTTCGTATAATCTTGCAGAAGCTAGAGCAGTGTTGTAATGTTACTGAAGTTTCATCCATGGTTTCCTTGAATTTGTTCTCCTTTTGGTGATTCACAGGTTGTCTATATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTTCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAG-AATCCTTGTTGTGAGTACATGTATGTTATGCAAACTCTAATTTGGTTTCTGGGATTGTATTTGACATAAATATGCTTTCTTTGATTGCAAAAGGTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCGCAT</genome_strand>
        <mrna_strand>GAAGAACTTGTGGATGGAGA...................................................................GGATAATAATC-TC--TTTGTGCTTGAGCTGGATTTTGAGCCATTTAATGCATCAGTTCCTCGTCCATTCACGCTCTTCATCCATTGGAAATGGAGTCCAATTCCTCAATCGTCATTTGTCCTCAAATATGTTTCGCAGCAAAGAATCTCTCGACCCGTTACTTGATTTCCTTAGAGGACACAATCATAAAGGGAAT.................................................................................................................................................................................GTCTTGATGTTGAATGAACGTATACAGCGAATCTCCAGGCTGGAGTCGTCTCTTAATAAAGCAGATGATTATCTCTCAAAGCTACCACCAGATACACCCTATACTGAGTTTGAATATGC.................................................................................................ATTGCAAGAAATGGGCTTTGAGAAAGGTTGGGGTGATACTGCAAAACGTGTTTTGGAGACTATGCATCTGCTTTCTGACATTCTTCAGGCTCCTGATCCCTCAACCTTGGAGACTTTTCTTGGTAGATTACCAATGGTGTTCAATGTTGTCATATTATCTCCTCATGGATACTTTGGTCAAGCAAATGTCTTGGGTTTGCCGGACACTGGTGGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTATATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTCCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAGAAATCCTTGTT...................................................................................GTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAAAATTAGTGGAACTGAATACTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446594" ref_strand="+" ref_description="SGN-E446594 [cSTA-22-I11]">
      <seq>tttcatatcaatgtcgaatctaaagttcacaagagtacctagtatgagagagagagttgaggatactctatctgctcaccgtaatcagctagtggctctcctgtcgagatatgtggcgcaggggaaggggatattgcaacctcatcacttaattgatgagttcaatagtgctgtatgtgatgacactgcttgtgaaaagctcaaagaaggccccttttgtgaaatcttgaaatctactcaggaagccattgtgctcccaccatttgttgctatagcagttcgtccaaggccaggtgtttgggaatatgttcgtgttaacgtatatgatctgagtgttgaacaattgactattcctgaatatctccgtttcaaagaagaacttgtggatggaaaggataataatctctttgtgcttgagctggattttgagccatttaatgcatcagttcctcgtccatcacgctcttcatccattggaaatggagtccaattcctcaatcgtcatttgtcctcaaatatgtttcgcagcaaagaatgtctcgacccgttacttgatttccttagaggacacaatcataaagggaatgtcttgatgttgaatgaacgtatacagcgaatctccaggctggagtcgtctcttaataaagcagatgattatctctcaaagctaccaccagatacaccctatactgagtttgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="15924" stop="14232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15635" g_stop="15526" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.873"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15525" i_stop="15445" i_length="81">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.816" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15444" g_stop="15312" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="241" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15311" i_stop="15242" i_length="70">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15241" g_stop="15090" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="393" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15089" i_stop="15023" i_length="67">
            <donor d_prob="0.972" d_score="0.92"/>
            <acceptor a_prob="0.928" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15022" g_stop="14827" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="586" r_length="193" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14826" i_stop="14650" i_length="177">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14649" g_stop="14532" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="704" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E446594" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15635" e_stop="15526"/>
          <exon e_start="15444" e_stop="15312"/>
          <exon e_start="15241" e_stop="15090"/>
          <exon e_start="15022" e_stop="14827"/>
          <exon e_start="14649" e_stop="14532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTGGAAAATGTCGAATCCAAAGTTGTCAAGAATACCTAGTATGAGAGAGAGAGTTGAGGATACTCTCTCTGCTCACCGTAATCAGCTAGTGGCTCTCCTATCCAGGTAGGTACTAATTTGGAGATTTTTCTTTTTTGATAAATTAGTTGAGAAAATTTGGAGATTTATTTAAAAAAAAAACAAAAGATATGTGGCGCAGGGGAAGGGGATATTGCAGCCTCATCATTTAATTGATGAGCTGAATAATGCTGTATGTGATGACACTGCTTGTGAAAAGCTGAAAGAAGGCCCCTTTTGTGAAATCTTGAAATCTACTCAGGTTGTTTCATTTGATTTTCTGTTCAGAATTTAAACATCGAAATTCGTTTACCTGACATCAAAATATATAGGAAGCCATTGTGCTCCCACCATTTGTTGCTATAGCAGTTCGTCCAAGGCCAGGTGTTTGGGAATATGTTCGTGTGAACGTATATGATCTGAGCGTTGAACAATTGACGGTTCCTGAATATCTCCGTTTCAAAGAAGAACTTGTCGATGGAGAGTAAGTGTTGTATTGCAAATATGTTACATAGGAAACTTGCACAAGTTTACCTTGGTTTCAACTGTAGGGATCATAATCATCTTTTTGTGCTTGAGCTGGATTTTGAGCCATTTAATGCATCAGTTCCTCGTCCCTCACGCTCTTCATCCATTGGAAATGGAGTACAATTCCTCAATCGTCATTTGTCCTCAAATATGTTTCGCAGCAACGAATCCCTCGACCCATTACTTGATTTCCTTAGAGGACACAATCATAAAGGGAATGTAAGTACCCTGACCGGTTTTTCCTAATTCTGCTTATCCCTGATTGTCTCGGTACGTGCAACCATTATCCGCTATTCTACTTGTATTGCTGGACACCATTACTTTATTGTTTTTCCCACTTGTTCATCTAACTGTTCAACTACTTCTATTTGTAAGATGGATTCTCTATCTACGCAGGTCTTGATGTTGAATGAACGTATACAGCGAATCTCCAGGCTGGAGTCGTCTCTTAATAAGGCAGATGATTATCTCTCAAAGCTACCACCAGATACACCCTATACTGACTTTGAATATG</genome_strand>
        <mrna_strand>TTTCAT--ATCAATGTCGAATCTAAAGTTCACAAGAGTACCTAGTATGAGAGAGAGAGTTGAGGATACTCTATCTGCTCACCGTAATCAGCTAGTGGCTCTCCTGTCGAG.................................................................................ATATGTGGCGCAGGGGAAGGGGATATTGCAACCTCATCACTTAATTGATGAGTTCAATAGTGCTGTATGTGATGACACTGCTTGTGAAAAGCTCAAAGAAGGCCCCTTTTGTGAAATCTTGAAATCTACTCAG......................................................................GAAGCCATTGTGCTCCCACCATTTGTTGCTATAGCAGTTCGTCCAAGGCCAGGTGTTTGGGAATATGTTCGTGTTAACGTATATGATCTGAGTGTTGAACAATTGACTATTCCTGAATATCTCCGTTTCAAAGAAGAACTTGTGGATGGAAA...................................................................GGATAATAATC-TC--TTTGTGCTTGAGCTGGATTTTGAGCCATTTAATGCATCAGTTCCTCGTCCATCACGCTCTTCATCCATTGGAAATGGAGTCCAATTCCTCAATCGTCATTTGTCCTCAAATATGTTTCGCAGCAAAGAATGTCTCGACCCGTTACTTGATTTCCTTAGAGGACACAATCATAAAGGGAAT.................................................................................................................................................................................GTCTTGATGTTGAATGAACGTATACAGCGAATCTCCAGGCTGGAGTCGTCTCTTAATAAAGCAGATGATTATCTCTCAAAGCTACCACCAGATACACCCTATACTGAGTTTGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558970" ref_strand="+" ref_description="SGN-E558970 [18393]">
      <seq>ctgatcttctacaaggtctcctcctcattgtatttcatatcaatgtcgaatccaaagttcacaagagtacctagatatgagagagagagttgaggatactctatctgctcacncgtaatcagctagtggctctcctgtcgagatatgtggcgcaggggaaggggatattgcaacctcatcacttaattgatgagttcaatagtgctgtatgtgatgacactgcttgtgaaaagctcaaagaaggccccttttgtgaaatcttgaaatctactcaggaagccattgtgctcccaccatttgttgctatagcagttcgtccaaggccaggtgtttgggaatatgttcgtgttaacgtatatgatctgagtgttgaacaattgactattcctgaatatctccgtttcaaagaagaacttgtggatggagaggataataatctctttgtgcttgagctggattttgagccatttaatgcatcagttcctcgtccatcacgctcttcatccattggaaatggagtccaattcctcaatcgtcatttgtgctcaaatatgtttcgcaggcaaagaatctctcggaccgttacttgatttccttagaggacacaaatcattacagggaatgtcttgatgttgaatgaacgtatacagggaatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="15924" stop="14314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15624" g_stop="15526" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="142" r_length="101" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15525" i_stop="15445" i_length="81">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.816" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15444" g_stop="15312" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="275" r_length="133" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15311" i_stop="15242" i_length="70">
            <donor d_prob="0.911" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15241" g_stop="15090" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="427" r_length="152" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15089" i_stop="15023" i_length="67">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.928" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15022" g_stop="14827" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="623" r_length="196" r_score="0.903"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14826" i_stop="14650" i_length="177">
            <donor d_prob="0.980" d_score="0.83"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14649" g_stop="14614" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="659" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E558970" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15624" e_stop="15526"/>
          <exon e_start="15444" e_stop="15312"/>
          <exon e_start="15241" e_stop="15090"/>
          <exon e_start="15022" e_stop="14827"/>
          <exon e_start="14649" e_stop="14614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCGAATCCAAAGTTGTCAAGAATACCTAG-TATGAGAGAGAGAGTTGAGGATACTCTCTCTGCTCAC-CGTAATCAGCTAGTGGCTCTCCTATCCAGGTAGGTACTAATTTGGAGATTTTTCTTTTTTGATAAATTAGTTGAGAAAATTTGGAGATTTATTTAAAAAAAAAACAAAAGATATGTGGCGCAGGGGAAGGGGATATTGCAGCCTCATCATTTAATTGATGAGCTGAATAATGCTGTATGTGATGACACTGCTTGTGAAAAGCTGAAAGAAGGCCCCTTTTGTGAAATCTTGAAATCTACTCAGGTTGTTTCATTTGATTTTCTGTTCAGAATTTAAACATCGAAATTCGTTTACCTGACATCAAAATATATAGGAAGCCATTGTGCTCCCACCATTTGTTGCTATAGCAGTTCGTCCAAGGCCAGGTGTTTGGGAATATGTTCGTGTGAACGTATATGATCTGAGCGTTGAACAATTGACGGTTCCTGAATATCTCCGTTTCAAAGAAGAACTTGTCGATGGAGAGTAAGTGTTGTATTGCAAATATGTTACATAGGAAACTTGCACAAGTTTACCTTGGTTTCAACTGTAGGGATCATAATCATCTTTTTGTGCTTGAGCTGGATTTTGAGCCATTTAATGCATCAGTTCCTCGTCCCTCACGCTCTTCATCCATTGGAAATGGAGTACAATTCCTCAATCGTCATTTGTCCTCAAATATGTTTCGCA-GCAACGAATCCCTCGACCCATTACTTGATTTCCTTAGAGGACAC-AATCA-TAAAGGGAATGTAAGTACCCTGACCGGTTTTTCCTAATTCTGCTTATCCCTGATTGTCTCGGTACGTGCAACCATTATCCGCTATTCTACTTGTATTGCTGGACACCATTACTTTATTGTTTTTCCCACTTGTTCATCTAACTGTTCAACTACTTCTATTTGTAAGATGGATTCTCTATCTACGCAGGTCTTGATGTTGAATGAACGTATACAGCGAATCTCC</genome_strand>
        <mrna_strand>AATGTCGAATCCAAAGTTCACAAGAGTACCTAGATATGAGAGAGAGAGTTGAGGATACTCTATCTGCTCACNCGTAATCAGCTAGTGGCTCTCCTGTCGAG.................................................................................ATATGTGGCGCAGGGGAAGGGGATATTGCAACCTCATCACTTAATTGATGAGTTCAATAGTGCTGTATGTGATGACACTGCTTGTGAAAAGCTCAAAGAAGGCCCCTTTTGTGAAATCTTGAAATCTACTCAG......................................................................GAAGCCATTGTGCTCCCACCATTTGTTGCTATAGCAGTTCGTCCAAGGCCAGGTGTTTGGGAATATGTTCGTGTTAACGTATATGATCTGAGTGTTGAACAATTGACTATTCCTGAATATCTCCGTTTCAAAGAAGAACTTGTGGATGGAGA...................................................................GGATAATAATC-TC--TTTGTGCTTGAGCTGGATTTTGAGCCATTTAATGCATCAGTTCCTCGTCCATCACGCTCTTCATCCATTGGAAATGGAGTCCAATTCCTCAATCGTCATTTGTGCTCAAATATGTTTCGCAGGCAAAGAATCTCTCGGACCGTTACTTGATTTCCTTAGAGGACACAAATCATTACAGGGAAT.................................................................................................................................................................................GTCTTGATGTTGAATGAACGTATACAGGGAATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370030" ref_strand="-" ref_description="SGN-E370030 [TUS-26-F20]">
      <seq>ttctgcctggattagacggctggatggctagcaaagttgcaacttggcaaaacctggaagggcactctgttcagtggttttgtgttgtcagcatagatcgaaaaggcatgatggccgatattacttcagcattggcagctgtaggcgtcatcatatgttcttgtgcggctgagacggatagagggaagggaatcggtgtcgcgctatttcatattgaagccaacctagagagcttggttggtgcaagttcgaggattgacatgatcctgggtgttttgggatggtccacgggctgcagttggtcagagaacaaacagtttctagaatgctaatttagtggcctggtgaagagtagttgcccagctgttgaatgcttggggaagaaagttttgttcagtgaaacctgagttctgtttgacaagtatagaagcaagcaatataggttatatggtgtagggcgactgtatataaaggaagagtagcaaccagttatacttgtaaaggaattttcaactatacgaactccaacaaaagtatgttacagttatacaaaataaatatattaaattatttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="20326" stop="17677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20026" g_stop="19922" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19921" i_stop="19236" i_length="686">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19174" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="167" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19173" i_stop="18471" i_length="703">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18470" g_stop="18402" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="236" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18401" i_stop="18320" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18319" g_stop="17978" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="578" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="593"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E370030" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370030" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20026" e_stop="19922"/>
          <exon e_start="19235" e_stop="19174"/>
          <exon e_start="18470" e_stop="18402"/>
          <exon e_start="18319" e_stop="17978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCCTGGATTAGACGGCTGGATGGCTAGCAAAGTTGCAACTTGGCAAAACCTGGAAGGGCACTCTGTTCAGTGGTTTTGTGTTGTCAGCATAGATCGAAAAGGTAATGTTTGGTTCAGAGGCTACTTATTGCAGATGAGCATCAAACTGGATAAGGCATCACCGCTCATCTATATTAGATGCATTTGCGAACTCTGCTATGTATTGGTGGTTCTAAGTCCTTTGAAAAATCATTACCACTAGCACTGCTAGTATTTGTTTTTCGCCTTTTGCTTAGGCATTTGGTAGCCGAAACCTACTGCTAGGCCTGAAATGTTCCCAACCAACAGGTTCTAACATTCCTAGGGATCTAATCCAAGACCTTTAGTTAAGTGTGGAAAGATCTTAGCCCACTACATCACACCCCTTGTGAGAGAGGTTTGTCAGAATTACGTATTTAATATCTTGACTTCCTCGAAGGAGCAAATTTTCAAGTTCAAAAGAATGACATCAAAGTTTTGAATAACCAGAGAAGTGTGTGAGAGTATGTCGGGGTGGGGGTGGGGGGGGGGGGAGGCGGGATTCCATCGATGTAGAAGATCTAACTTTCTGTTCTTTTTTGTCTTTGATGTATTTTGTATAGTTCTGACTACATGTTTCCAGTTTATTAACCTTATATGTTCATTTGCATATGCACATTATGTATGACCTGGTTATTGGTTGACTAGTAGCAATATTAATATGTAGCCAACATTTTTCATGGTTTACTACTTGTCATGGCTGACATCTCAAACCACTACAATTATTTAGGCATGATGGCCGATATTACTTCAGCATTGGCAGCTGTAGGCGTCATCATATGTTCTTGTGCGGTGAGTTGGAACATTTATCATATCATTTTTCATCTAGGCTCGAACTCCTGAGCTATTCATATTGATAAATTTTAATATGGTCTGGGTTGACTGTGAAACTGTCTACATTGAGATCTGAACCTAGCTTACATTTGTGAAAATTTTCAATATTTGTTTAATATTAAATAACGGAACCTTGATTCACACCTTTCTTAGCTAGCTATATTAGGCAGTTTGTGACAAAGTATGTGACACTGTTAGCTCTTTAATCTTTATATTACTTCAGCAATAACCAGCAGGAGGTAACAATGAGAACTGTGTCGAAAGAGGATCTTACAAGTTAAGTTAGTCAATTTGCTCTACTACTTGCGTCTTGGTGCAGTGGGAGAGCATACATAGCTTCTTTTTTTCTTGATATGCTGATGGCGAAATAAGAAGAAGATGAATGTCATACCTGGAGTGATTGAGAACATTGTGGAAGGGAAAGAAGTGCTTAGGATAAAAATAAGGAAATTCATGCTAACTGTTACTATGAGAGGACTGAAACAATTCTATCTATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAATTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAACTGCAGGCTGAGACGGATAGAGGGAAGGGAATCGGTGTCGCGCTATTTCATATTGAAGCCAACCTAGAGAGCTTGGTATGTCTTCTGAACATGCTTCACTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTTATGAATTCTCAGCTCCCACAGGTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAC</genome_strand>
        <mrna_strand>TTCTGCCTGGATTAGACGGCTGGATGGCTAGCAAAGTTGCAACTTGGCAAAACCTGGAAGGGCACTCTGTTCAGTGGTTTTGTGTTGTCAGCATAGATCGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGATGGCCGATATTACTTCAGCATTGGCAGCTGTAGGCGTCATCATATGTTCTTGTGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGACGGATAGAGGGAAGGGAATCGGTGTCGCGCTATTTCATATTGAAGCCAACCTAGAGAGCTTG..................................................................................GTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217691" ref_strand="+" ref_description="SGN-E217691 [cLEL-25-M15](-)">
      <seq>gggaagggaatcggtgtcgcgctatttcatattgaagccaacctagagagcttggttggtgcaagttcgaggattgacatgatcctgggtgttttgggatggtccacgggctgcagttggtcagagaacaaacagtttctagaatgctaatttagtggcctggtgaagagtagttgcccagctgttgaatgcttggggaagaaagttttgttcagtgaaacctgagttctgtttgacaagtatagaagcaagcaatataggttatatggtgtagggcgactgtatataaaggaagagtagcaaccagttatacttgtaaaggaattttcaactatacgaactccaacaaaagtatgttacagttatacacaataaatatattaaattatttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="18755" stop="17677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18455" g_stop="18402" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18401" i_stop="18320" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18319" g_stop="17978" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="396" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="411"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E217691" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18455" e_stop="18402"/>
          <exon e_start="18319" e_stop="17978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAGGGAATCGGTGTCGCGCTATTTCATATTGAAGCCAACCTAGAGAGCTTGGTATGTCTTCTGAACATGCTTCACTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTTATGAATTCTCAGCTCCCACAGGTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAC</genome_strand>
        <mrna_strand>GGGAAGGGAATCGGTGTCGCGCTATTTCATATTGAAGCCAACCTAGAGAGCTTG..................................................................................GTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACACAATAAATATATTAAATTATTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217651" ref_strand="+" ref_description="SGN-E217651 [cLEL-25-M15](-)">
      <seq>gcttggttggtgcaagttcgaggattgacatgatcctgggtgttttgggatggtccacgggctgcagttggtcagagaacaaacagtttctagaatgctaatttagtggcctggtgaagagtagttgcccagctgttgaatgcttggggaagaaagttttgttcagtgaaacctgagttctgtttgacaagtatagaagcaagcaatataggttatatggtgtagggcgactgtatataaaggaagagtagcaaccagttatacttgtaaaggaattttcaactatacgaactccaacaaaagtatgttacagttatacaaaataaatatattaaattatttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="18620" stop="17677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18406" g_stop="18402" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18401" i_stop="18320" i_length="82">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18319" g_stop="17978" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="347" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="362"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E217651" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18406" e_stop="18402"/>
          <exon e_start="18319" e_stop="17978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGGTATGTCTTCTGAACATGCTTCACTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTTATGAATTCTCAGCTCCCACAGGTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAC</genome_strand>
        <mrna_strand>GCTTG..................................................................................GTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259074" ref_strand="-" ref_description="SGN-E259074 [cLEG-41-K16]">
      <seq>ggttggtgcaagttcgaggattgacatgatcctgggtgttttgggatggtccacgggctgcagttggtcagagaacaaacagtttctagaatgctaatttagtggcctggtgaagagtagttgcccagctgttgaatgcttggggaagaaagttttgttcagtgaaacctgagttctgtttgacaagtatagaagcaagcaatataggttatatggtgtagggcgactgtatataaaggaagagtagcaaccagttatacttgtaaaggaattttcaactatacgaactccaacaaaagtatgttacagttatacaaaataaatatattaaattatttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="18620" stop="17677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18320" g_stop="17978" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="358"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E259074" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259074" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18320" e_stop="17978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAC</genome_strand>
        <mrna_strand>GGTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259978" ref_strand="-" ref_description="SGN-E259978 [cLEG-51-N5]">
      <seq>atgctaatttagtggcctggtgaagagtagttgcccagctgttgaatgcttggggaagaaagttttgttcagtgaaacctgagttctgtttgacaagtatagaagcaagcaatataggttatatggtgtagggcgactgtatataaaggaagagtagcaaccagttatacttgtaaaggaattttcaactatacgaactccaacaaaagtatgttacagttatacaaaataaatatattaaattatttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="18530" stop="17677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18230" g_stop="17978" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="254" polyA_stop="268"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E259978" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259978" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18230" e_stop="17978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAC</genome_strand>
        <mrna_strand>ATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255215" ref_strand="+" ref_description="SGN-E255215 [cLEG-31-F9]">
      <seq>ggaaacataataagtgcatgccagcataccaaatttgaaggccacaggggagacattgtcaccaaggaaatggtgttggcgaaatgataccttgctaacataccaaggtaccagggatgttctgcctggattagacggctggatggctagcaaagttgcaacttggcaaaacctggaagggcacctctgttcagtggttttgtgttgtcagcatagatcgaaaaggcatgatggccgatattacttcagcattggcagctgtaggcgtcatcatatgttcttgtgcggctgagacggatagagggaagggaatcggtgtcgcgctatttcatattgaagccaacctagagagcttggttggtgcaagttcgaggattgacatgatcctgggtgttttgggatggtccacgggctgcagttggtcagagaacaaacagtttctagaatgctaatttagtggcctggtgaagagtagttgcccagctgttgaatgcttggggaagaaagttttgttcagtgaaacctgagttctgtttgacaagtatagaagcaagcaatataggttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="20440" stop="17806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20140" g_stop="19922" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19921" i_stop="19236" i_length="686">
            <donor d_prob="0.851" d_score="0.96"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19174" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="287" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19173" i_stop="18471" i_length="703">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18470" g_stop="18402" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="356" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18401" i_stop="18320" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18319" g_stop="18106" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="570" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E255215" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20140" e_stop="19922"/>
          <exon e_start="19235" e_stop="19174"/>
          <exon e_start="18470" e_stop="18402"/>
          <exon e_start="18319" e_stop="18106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACATAATAAGTGCATG-CAGCATA-CAAATTTGAAGGCCACAGGGGAGACATTGTCA-CAAGGAAATGGTGTTGGCGAAATGATA-CTTGCTAACATACCAAGGTA-CAGGGATGTTCTGCCTGGATTAGACGGCTGGATGGCTAGCAAAGTTGCAACTTGGCAAAACCTGGAAGGGCA-CTCTGTTCAGTGGTTTTGTGTTGTCAGCATAGATCGAAAAGGTAATGTTTGGTTCAGAGGCTACTTATTGCAGATGAGCATCAAACTGGATAAGGCATCACCGCTCATCTATATTAGATGCATTTGCGAACTCTGCTATGTATTGGTGGTTCTAAGTCCTTTGAAAAATCATTACCACTAGCACTGCTAGTATTTGTTTTTCGCCTTTTGCTTAGGCATTTGGTAGCCGAAACCTACTGCTAGGCCTGAAATGTTCCCAACCAACAGGTTCTAACATTCCTAGGGATCTAATCCAAGACCTTTAGTTAAGTGTGGAAAGATCTTAGCCCACTACATCACACCCCTTGTGAGAGAGGTTTGTCAGAATTACGTATTTAATATCTTGACTTCCTCGAAGGAGCAAATTTTCAAGTTCAAAAGAATGACATCAAAGTTTTGAATAACCAGAGAAGTGTGTGAGAGTATGTCGGGGTGGGGGTGGGGGGGGGGGGAGGCGGGATTCCATCGATGTAGAAGATCTAACTTTCTGTTCTTTTTTGTCTTTGATGTATTTTGTATAGTTCTGACTACATGTTTCCAGTTTATTAACCTTATATGTTCATTTGCATATGCACATTATGTATGACCTGGTTATTGGTTGACTAGTAGCAATATTAATATGTAGCCAACATTTTTCATGGTTTACTACTTGTCATGGCTGACATCTCAAACCACTACAATTATTTAGGCATGATGGCCGATATTACTTCAGCATTGGCAGCTGTAGGCGTCATCATATGTTCTTGTGCGGTGAGTTGGAACATTTATCATATCATTTTTCATCTAGGCTCGAACTCCTGAGCTATTCATATTGATAAATTTTAATATGGTCTGGGTTGACTGTGAAACTGTCTACATTGAGATCTGAACCTAGCTTACATTTGTGAAAATTTTCAATATTTGTTTAATATTAAATAACGGAACCTTGATTCACACCTTTCTTAGCTAGCTATATTAGGCAGTTTGTGACAAAGTATGTGACACTGTTAGCTCTTTAATCTTTATATTACTTCAGCAATAACCAGCAGGAGGTAACAATGAGAACTGTGTCGAAAGAGGATCTTACAAGTTAAGTTAGTCAATTTGCTCTACTACTTGCGTCTTGGTGCAGTGGGAGAGCATACATAGCTTCTTTTTTTCTTGATATGCTGATGGCGAAATAAGAAGAAGATGAATGTCATACCTGGAGTGATTGAGAACATTGTGGAAGGGAAAGAAGTGCTTAGGATAAAAATAAGGAAATTCATGCTAACTGTTACTATGAGAGGACTGAAACAATTCTATCTATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAATTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAACTGCAGGCTGAGACGGATAGAGGGAAGGGAATCGGTGTCGCGCTATTTCATATTGAAGCCAACCTAGAGAGCTTGGTATGTCTTCTGAACATGCTTCACTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTTATGAATTCTCAGCTCCCACAGGTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATG</genome_strand>
        <mrna_strand>GGAAACATAATAAGTGCATGCCAGCATACCAAATTTGAAGGCCACAGGGGAGACATTGTCACCAAGGAAATGGTGTTGGCGAAATGATACCTTGCTAACATACCAAGGTACCAGGGATGTTCTGCCTGGATTAGACGGCTGGATGGCTAGCAAAGTTGCAACTTGGCAAAACCTGGAAGGGCACCTCTGTTCAGTGGTTTTGTGTTGTCAGCATAGATCGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGATGGCCGATATTACTTCAGCATTGGCAGCTGTAGGCGTCATCATATGTTCTTGTGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGACGGATAGAGGGAAGGGAATCGGTGTCGCGCTATTTCATATTGAAGCCAACCTAGAGAGCTTG..................................................................................GTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222689" ref_strand="+" ref_description="SGN-E222689 [cLEL-16-E15](-)">
      <seq>ggcacgagattacattgcattcttcttttgagatattaccttttgagtattcattctgaaaaatgcacaaagatctaagcaattaaatagtcatattctcctcctgtttcaattatgttagaattctcaacttgtgaggtgactgcattgttacttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="18937" stop="18177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18645" g_stop="18473" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E222689" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18645" e_stop="18473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCTATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAA-TTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAACTGC</genome_strand>
        <mrna_strand>GGCACGAGATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAACTTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222269" ref_strand="+" ref_description="SGN-E222269 [cLEL-16-E15](-)">
      <seq>ggcacgagattacattgcattcttcttttgagatattaccttttgagtattcattctgaaaaatgcacaaagatctaagcaattaaatagtcatattctcctcctgtttcaattatgttagaattctcaattgtgaggtgactgcattgttacttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="18937" stop="18177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18645" g_stop="18473" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E222269" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18645" e_stop="18473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCTATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAATTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAACTGC</genome_strand>
        <mrna_strand>GGCACGAGATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAATTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740343" ref_strand="+" ref_description="SGN-E740343 [LC21AB07]">
      <seq>ctttctttatgagagcatgtttcgtttggaggttcagataagaactgaagagatggacctcatagctgaaagaggcattgctgcacattatagtgggaaaggttttgtaaatggtttagttgggcatgttataaccaatgataaaagttctggagggaaaatagtctgccttaacaatgccaatattgctctcaggattggctggctgaatgcaattagggagtggcaagaagagttcgttggaaacatgagctctagggaatttgtggacactgttaccagagatctgttgggcagccgtgtatttgtgtttacacccggaggagagataaaacatctcccaaagggggctactgtcattgattatgcgtatatgatacacactgaaattggcaataaaatggtggctgctaaggtgaatggtaatcttgtcaagccaatgcatgtacttgcaaacgcagaagttgtagagattatcacttacaatggtctctccagcaagtctgctttcgagagacataaacagtggcttcaacatgcaaaaactcgttgcgcccggcataagattatgaaatttttgagagagcaagctgcactatcagcatctgaaataactgtggattcagttaaggaatttgctgctgagtctgaaggggatagcacagtggaagaattagcagattactcaaagggaaccaaacattcgtgggagaaaatcctcaagaatgttatggaggtatcatctgcaaggacaaatggtgaagatattttccaactccgtagtggtagtattcaaattcccaaggtaaatgggaaacataataagtgcatgcagcatacgagtttgaaggcactggggagacattgtcacaaggaaatggtgttggtgaaatgatacttgctaacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="22795" stop="19742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22496" g_stop="22460" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22459" i_stop="22128" i_length="332">
            <donor d_prob="0.758" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22127" g_stop="21969" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="196" r_length="159" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21968" i_stop="21867" i_length="102">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21866" g_stop="21735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="328" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21734" i_stop="21647" i_length="88">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21646" g_stop="21560" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="415" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21559" i_stop="21440" i_length="120">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="21439" g_stop="21368" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="487" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21367" i_stop="20549" i_length="819">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20548" g_stop="20462" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="574" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20461" i_stop="20379" i_length="83">
            <donor d_prob="0.923" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20378" g_stop="20042" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="910" r_length="336" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E740343" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22496" e_stop="22460"/>
          <exon e_start="22127" e_stop="21969"/>
          <exon e_start="21866" e_stop="21735"/>
          <exon e_start="21646" e_stop="21560"/>
          <exon e_start="21439" e_stop="21368"/>
          <exon e_start="20548" e_stop="20462"/>
          <exon e_start="20378" e_stop="20042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTTATGAGAGCATGTTTCGTTTAGAGGTTCAGGTACACTCACAGCACCCCCAAAACTAAGGAATAATAAATATATCAGTTACTCCCTCTATTCCAATATGTATGTCCCACCTATTTAATTATGTACCAAAATGTTTGACAGCATTCTATCTCTACAAAATTTCAATTTCAAGAATCCAAATACATTGCACTCTTCAAATTTGAACTCTCTTTTGATGTTCCCAATCAAACTAATGTTTCAGTCATTATTGTAATATTTTACTTTCTGATTTTATGAATTTGCCTCTGGTTCATTGACAAGTCAGCACTTATTTGTTTCTGATTATTGTCGAGCAACTTGATTATACTTGCATAATGTTTGGCAGATTAGAACTGAAGAGATGGACCTCATAGCTGAGAGAGGCATTGCTGCACACTACAGTGGGAAAGGTTTTGTAAATGGTTTAGTTGGGCATGTTATAACCAATGATAAAAATTCTGGAGGGAAAATAGTCTGCCTTAACAATGCCAATATTGCTCTCAGGGTATAAAGTATATTGTTTTGCTAAACTGTCTAGTGCCTTAATAGCTGTGTGTGCTTCGTTTATAACTATTATTATGGGATAAAGTTCCTTTTTCTGATGTAGATTGGCTGGCTGAATGCAATTAGGGAGTGGCAAGAAGAGTTCGTTGGAAACATGAGTTCTAGGGAATTTGTGGACACTATTACCAGAGATCTGTTGGGCAGTCGTGTCTTTGTGTTTACACCTGGAGGAGAGGTAACTTTGTTGTGTTTTTCTACTCAATTTGTTACCCTTTTTTTGAGTCCTGTTACATCATAGCTATACCACTTTACTATATTTGCAGATAAAACATCTCCCAAAGGGGGCTACTGTCATTGATTATGCGTATATGATACACACTGAAATTGGCAATAAAATGGTGGCTGCTAAGGTCTCAATCTTGTTACTATAGTTCTTTTTAATAATATCTCGCCGTATAAAAAAAATCCCGTTCTCTGGGTTTTTAATGCTTCATGAATCTGGATGTGACTGCAGCATCTTCTGTTTGCAGGTGAATGGTAATCTTATCAAGCCAATGCATGTACTTGCAAACGCAGAAGTTGTAGAGATTATCACTTACAATGTTAGTTGCTATGAATTCTTAACCTTCTTTTGCCTATATTCTCTATCTTTCATTCTTTTTTGTCTTCCTTTTGTGGGCAGCCTAGGGCTTTCTACGTTTTTCATTGTTTTTGTCTTGCTGAGACCTCTACTCATGTCTCATATGTGTTGTAATTCTTAAAATTCTAGATATCAACTAAACCTTAATGCAGATAAAGGTCAGCTGTATTTAATATGTAAGCATGCATCTTTTTTTTGTTTTATCTTTCTTCTTAATCTTTCAGTTCTTGGACCACCCTCTTATGCTTATGACATATAAACTGGTCATGCTTTAACAGTGTATTACTGGCTAGGAGGGATAGTCTAGTAGTACAGGCCTCCACTACCAACCATAAGGTTGGAAGTCTGTGTCACCAATGAAGTGAGGTGGAAGTGGACCACTGTTGGGCTCTTGGGCAATGGTTTTTTGGGCTCGTGGTTTTTTTCTGGGTGGGGGGTTGAGGGTGGGATTACCAATTGCAAAAAAGTTCTGGGATATTCATTTAGGGTGTGTTTCGATGAAGGGAAACATTTTCATGTTTTTCCAATTTTCTCATGTTCGGTTGGTCAAATAATTTGTAAAACATTTTCTTTAGAAAAACAAGCTCCTTAAAATTGAGCAAAATGACTTTCATAATGGAAGTAAGGAAAACAAGTTGCACCTAGTGATATTTTAAAAAAATTTGTAGGTTGTCATCATTTGTTTCTTTCTATAAGCTCTGTAAATTTTTCTTGATGCATTGGAGTAATTAGTTCACCATGCTGGTAATTTACAAGCATCCGGCTATTTTCCTTTCTTCAGGGTCTCTCTAGCAAGTCTGCTTTCGAGAGACACAAACAGTGGCTTCAACATGCGAAAACTCGTTGTGCCCGACACAAAATTATGAAAGTATGTATCTCTGCGGAGTTAGAATGGAAATTTATCATGTACTGCTACTAAATTAACTGATGTGGAGCTCATCTTTTCTTTAGTTTTTGAGAGAGCAAGCTGCACTATCAGCATCTGAGATAACTGTGGATTCAGTTAAGGAATTTGCAGCTGAGTCTGAAGGGGATAGCACAGTGGAAAAATTAGCAGATTACTCTGAGGGAACCAAACATTCGTGGGAGAAAATCCTCAAAAATGTTATGGATGTATTATCTGCAAGGATGAGTGGTGAAAATATTTTCCAACTCCGTAGTGGTAGTATTCAAATTCCCAAGGTAAATGGGAAACATAATAAGTGCATGCAGCATACAAATTTGAAGGCCACAGGGGAGACATTGTCACAAGGAAATGGTGTTGGCGAAATGATACTTGCTAACATAC</genome_strand>
        <mrna_strand>CTTTCTTTATGAGAGCATGTTTCGTTTGGAGGTTCAG............................................................................................................................................................................................................................................................................................................................................ATAAGAACTGAAGAGATGGACCTCATAGCTGAAAGAGGCATTGCTGCACATTATAGTGGGAAAGGTTTTGTAAATGGTTTAGTTGGGCATGTTATAACCAATGATAAAAGTTCTGGAGGGAAAATAGTCTGCCTTAACAATGCCAATATTGCTCTCAGG......................................................................................................ATTGGCTGGCTGAATGCAATTAGGGAGTGGCAAGAAGAGTTCGTTGGAAACATGAGCTCTAGGGAATTTGTGGACACTGTTACCAGAGATCTGTTGGGCAGCCGTGTATTTGTGTTTACACCCGGAGGAGAG........................................................................................ATAAAACATCTCCCAAAGGGGGCTACTGTCATTGATTATGCGTATATGATACACACTGAAATTGGCAATAAAATGGTGGCTGCTAAG........................................................................................................................GTGAATGGTAATCTTGTCAAGCCAATGCATGTACTTGCAAACGCAGAAGTTGTAGAGATTATCACTTACAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCTCCAGCAAGTCTGCTTTCGAGAGACATAAACAGTGGCTTCAACATGCAAAAACTCGTTGCGCCCGGCATAAGATTATGAAA...................................................................................TTTTTGAGAGAGCAAGCTGCACTATCAGCATCTGAAATAACTGTGGATTCAGTTAAGGAATTTGCTGCTGAGTCTGAAGGGGATAGCACAGTGGAAGAATTAGCAGATTACTCAAAGGGAACCAAACATTCGTGGGAGAAAATCCTCAAGAATGTTATGGAGGTATCATCTGCAAGGACAAATGGTGAAGATATTTTCCAACTCCGTAGTGGTAGTATTCAAATTCCCAAGGTAAATGGGAAACATAATAAGTGCATGCAGCATACGAGTTTGAAGG-CACTGGGGAGACATTGTCACAAGGAAATGGTGTTGGTGAAATGATACTTGCTAACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736926" ref_strand="+" ref_description="SGN-E736926 [LC07DC10]">
      <seq>gttcagataagaactgaagagatggacctcatagctgaaagaggcattgctgcacattatagtgggaaaggttttgtaaatggtttagttgggcatgttataaccaatgataaaagttctggagggaaaatagtctgccttaacaatgccaatattgctctcaggattggctggctgaatgcaattagggagtggcaagaagagttcgttggaaacatgagctctagggaatttgtggacactgttaccagagatctgttgggcagccgtgtatttgtgtttacacccggaggagagataaaacatctcccaaagggggctactgtcattgattatgcgtatatgatacacactgaaattggcaataaaatggtggctgctaaggtgaatggtaatcttgtcaagccaatgcatgtacttgcaaacgcagaagttgtagagattatcacttacaatggtctctccagcaagtctgctttcgagagacataaacagtggcttcaacatgcaaaaactcgttgcgcccggcacaagattatgaaatttttgagagagcaagctgcactatcagcatctgaaataactgtggattcagttaaggaatttgctgctgagtctgaaggggatagcacagtggaagaattagcagattactcaaagggaaccaaacattcgtgggagaaaatcctcaagaatgttatggaggtatcatctgcaaggacaaatggtgaagatattttccaactccgtagtggtagtattcaaattcccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="22430" stop="19848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22127" g_stop="21969" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="165" r_length="159" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21968" i_stop="21867" i_length="102">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21866" g_stop="21735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="297" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21734" i_stop="21647" i_length="88">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21646" g_stop="21560" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="384" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21559" i_stop="21440" i_length="120">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21439" g_stop="21368" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="456" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21367" i_stop="20549" i_length="819">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20548" g_stop="20462" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="543" r_length="87" r_score="0.931"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20461" i_stop="20379" i_length="83">
            <donor d_prob="0.923" d_score="0.92"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20378" g_stop="20148" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="774" r_length="231" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E736926" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22127" e_stop="21969"/>
          <exon e_start="21866" e_stop="21735"/>
          <exon e_start="21646" e_stop="21560"/>
          <exon e_start="21439" e_stop="21368"/>
          <exon e_start="20548" e_stop="20462"/>
          <exon e_start="20378" e_stop="20148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGAACTGAAGAGATGGACCTCATAGCTGAGAGAGGCATTGCTGCACACTACAGTGGGAAAGGTTTTGTAAATGGTTTAGTTGGGCATGTTATAACCAATGATAAAAATTCTGGAGGGAAAATAGTCTGCCTTAACAATGCCAATATTGCTCTCAGGGTATAAAGTATATTGTTTTGCTAAACTGTCTAGTGCCTTAATAGCTGTGTGTGCTTCGTTTATAACTATTATTATGGGATAAAGTTCCTTTTTCTGATGTAGATTGGCTGGCTGAATGCAATTAGGGAGTGGCAAGAAGAGTTCGTTGGAAACATGAGTTCTAGGGAATTTGTGGACACTATTACCAGAGATCTGTTGGGCAGTCGTGTCTTTGTGTTTACACCTGGAGGAGAGGTAACTTTGTTGTGTTTTTCTACTCAATTTGTTACCCTTTTTTTGAGTCCTGTTACATCATAGCTATACCACTTTACTATATTTGCAGATAAAACATCTCCCAAAGGGGGCTACTGTCATTGATTATGCGTATATGATACACACTGAAATTGGCAATAAAATGGTGGCTGCTAAGGTCTCAATCTTGTTACTATAGTTCTTTTTAATAATATCTCGCCGTATAAAAAAAATCCCGTTCTCTGGGTTTTTAATGCTTCATGAATCTGGATGTGACTGCAGCATCTTCTGTTTGCAGGTGAATGGTAATCTTATCAAGCCAATGCATGTACTTGCAAACGCAGAAGTTGTAGAGATTATCACTTACAATGTTAGTTGCTATGAATTCTTAACCTTCTTTTGCCTATATTCTCTATCTTTCATTCTTTTTTGTCTTCCTTTTGTGGGCAGCCTAGGGCTTTCTACGTTTTTCATTGTTTTTGTCTTGCTGAGACCTCTACTCATGTCTCATATGTGTTGTAATTCTTAAAATTCTAGATATCAACTAAACCTTAATGCAGATAAAGGTCAGCTGTATTTAATATGTAAGCATGCATCTTTTTTTTGTTTTATCTTTCTTCTTAATCTTTCAGTTCTTGGACCACCCTCTTATGCTTATGACATATAAACTGGTCATGCTTTAACAGTGTATTACTGGCTAGGAGGGATAGTCTAGTAGTACAGGCCTCCACTACCAACCATAAGGTTGGAAGTCTGTGTCACCAATGAAGTGAGGTGGAAGTGGACCACTGTTGGGCTCTTGGGCAATGGTTTTTTGGGCTCGTGGTTTTTTTCTGGGTGGGGGGTTGAGGGTGGGATTACCAATTGCAAAAAAGTTCTGGGATATTCATTTAGGGTGTGTTTCGATGAAGGGAAACATTTTCATGTTTTTCCAATTTTCTCATGTTCGGTTGGTCAAATAATTTGTAAAACATTTTCTTTAGAAAAACAAGCTCCTTAAAATTGAGCAAAATGACTTTCATAATGGAAGTAAGGAAAACAAGTTGCACCTAGTGATATTTTAAAAAAATTTGTAGGTTGTCATCATTTGTTTCTTTCTATAAGCTCTGTAAATTTTTCTTGATGCATTGGAGTAATTAGTTCACCATGCTGGTAATTTACAAGCATCCGGCTATTTTCCTTTCTTCAGGGTCTCTCTAGCAAGTCTGCTTTCGAGAGACACAAACAGTGGCTTCAACATGCGAAAACTCGTTGTGCCCGACACAAAATTATGAAAGTATGTATCTCTGCGGAGTTAGAATGGAAATTTATCATGTACTGCTACTAAATTAACTGATGTGGAGCTCATCTTTTCTTTAGTTTTTGAGAGAGCAAGCTGCACTATCAGCATCTGAGATAACTGTGGATTCAGTTAAGGAATTTGCAGCTGAGTCTGAAGGGGATAGCACAGTGGAAAAATTAGCAGATTACTCTGAGGGAACCAAACATTCGTGGGAGAAAATCCTCAAAAATGTTATGGATGTATTATCTGCAAGGATGAGTGGTGAAAATATTTTCCAACTCCGTAGTGGTAGTATTCAAATTCCCAAG</genome_strand>
        <mrna_strand>ATAAGAACTGAAGAGATGGACCTCATAGCTGAAAGAGGCATTGCTGCACATTATAGTGGGAAAGGTTTTGTAAATGGTTTAGTTGGGCATGTTATAACCAATGATAAAAGTTCTGGAGGGAAAATAGTCTGCCTTAACAATGCCAATATTGCTCTCAGG......................................................................................................ATTGGCTGGCTGAATGCAATTAGGGAGTGGCAAGAAGAGTTCGTTGGAAACATGAGCTCTAGGGAATTTGTGGACACTGTTACCAGAGATCTGTTGGGCAGCCGTGTATTTGTGTTTACACCCGGAGGAGAG........................................................................................ATAAAACATCTCCCAAAGGGGGCTACTGTCATTGATTATGCGTATATGATACACACTGAAATTGGCAATAAAATGGTGGCTGCTAAG........................................................................................................................GTGAATGGTAATCTTGTCAAGCCAATGCATGTACTTGCAAACGCAGAAGTTGTAGAGATTATCACTTACAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCTCCAGCAAGTCTGCTTTCGAGAGACATAAACAGTGGCTTCAACATGCAAAAACTCGTTGCGCCCGGCACAAGATTATGAAA...................................................................................TTTTTGAGAGAGCAAGCTGCACTATCAGCATCTGAAATAACTGTGGATTCAGTTAAGGAATTTGCTGCTGAGTCTGAAGGGGATAGCACAGTGGAAGAATTAGCAGATTACTCAAAGGGAACCAAACATTCGTGGGAGAAAATCCTCAAGAATGTTATGGAGGTATCATCTGCAAGGACAAATGGTGAAGATATTTTCCAACTCCGTAGTGGTAGTATTCAAATTCCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698006" ref_strand="+" ref_description="SGN-E698006 [FA04DH05]">
      <seq>cctttcaataaatgaagtaaaccaaattgcacagcttcgaattattataaaaccaaagccttgtgtcggagttaggcccctttgcagtgcacagcagatatgctatcatctgcttggactagtacatggaatctggacacctatccctcgtgctatgaaagactacattgccacccctaagcctaatggctatcaaagtcttcatacaactgtgattccatttctttatgagagcatgtttcgtttggaggttcagataagaactgaagagatggacctcatagctgaaagaggcattgctgcacattatagtgggaaaggttttgtaaatggtttagttgggcatgttataaccaatgataaaagttctggagggaaaatagtctgccttaacaatgccaatattgctctcaggattggctggctgaatgcaattagggagtggcaagaagagttcgttggaaacatgagctctagggaatttgtggacactgttaccagagatctgttgggcagccgtgtatttgtgtttacacccggaggagagataaaaccatctcccaaagggggctactgtcattgattatgcgtatatgatacacactgaaatcggccaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="23671" stop="21275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23374" g_stop="23341" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23340" i_stop="23249" i_length="92">
            <donor d_prob="0.324" d_score="0.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23248" g_stop="23186" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="97" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23185" i_stop="22706" i_length="480">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22705" g_stop="22649" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="154" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22648" i_stop="22562" i_length="87">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22561" g_stop="22460" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="256" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22459" i_stop="22128" i_length="332">
            <donor d_prob="0.758" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22127" g_stop="21969" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="415" r_length="159" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21968" i_stop="21867" i_length="102">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21866" g_stop="21735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="547" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21734" i_stop="21647" i_length="88">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21646" g_stop="21575" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="621" r_length="74" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E698006" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23374" e_stop="23341"/>
          <exon e_start="23248" e_stop="23186"/>
          <exon e_start="22705" e_stop="22649"/>
          <exon e_start="22561" e_stop="22460"/>
          <exon e_start="22127" e_stop="21969"/>
          <exon e_start="21866" e_stop="21735"/>
          <exon e_start="21646" e_stop="21575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCAATAAAAGAAGTAAACCAAATTGCACAGGTCTTCTTTTGTGATAAGCCTGATAAATATGATAGAAAATGTTGCTTTATGTCTACTGGTATGTGTTGACTTTTATATATTTGGAATGCCAGCTTCGAATTATTATAAAACCAAAGCCTTGTGTCGGAGTTAGGCCCCTTTGCAGTGCACAGCAGGTAATGTGTTATGACAATGCCGATACAACTTTCTTTTGAAGTTGAATACTTTATTTGGTTTCCCGAAACTTCTAAGGTTGTCTTTTTTTTATTGGTAGAACTTGTAAGGTTGTTTATGACGTATATTATTCAAAGTTCTAGTGGATTTCAATTTCGAAACCTTTGACCAAAACAGCGGGAAGTGTACAACTTGTATTTCCTAACATTAAAGAGAAAAAAGGGCGGTGGGGGTGATGGTGGTATGGCATTTTGTTTGTGGAAACAGAGTTCATTAGATGTCACTTTGTGATCATGCATTTTGGTTTGAAATAAGATCGCTCAATAATGTGTTGTAAATCATATACAAATTGTACCTAAGTTTTATTCCTTTGGAAATTGAGCAGAAAGAATTACTAGTATAAATTAATAAATCAATACTGATTTTTGCACTTCTTTCTGTATACAGTATAGAGGTATCTCTGACATGTCTTTTCTGTATAGATATGCTATCATCTGCTTGGACTAGTACATGGAATCTGGACACCTATCCCTCGTGCTGTAAGTATTGGATAATGTATCTGCATCCCTTTCCTCTGTCATATGCTAATGGACTTTTGTCGCTCTATCTGTAACATTTTGCCACAGATGAAAGACTACATTGCCACTCCAAAGCCTAACGGCTATCAAAGTCTTCATACAACGGTGATTCCATTTCTTTATGAGAGCATGTTTCGTTTAGAGGTTCAGGTACACTCACAGCACCCCCAAAACTAAGGAATAATAAATATATCAGTTACTCCCTCTATTCCAATATGTATGTCCCACCTATTTAATTATGTACCAAAATGTTTGACAGCATTCTATCTCTACAAAATTTCAATTTCAAGAATCCAAATACATTGCACTCTTCAAATTTGAACTCTCTTTTGATGTTCCCAATCAAACTAATGTTTCAGTCATTATTGTAATATTTTACTTTCTGATTTTATGAATTTGCCTCTGGTTCATTGACAAGTCAGCACTTATTTGTTTCTGATTATTGTCGAGCAACTTGATTATACTTGCATAATGTTTGGCAGATTAGAACTGAAGAGATGGACCTCATAGCTGAGAGAGGCATTGCTGCACACTACAGTGGGAAAGGTTTTGTAAATGGTTTAGTTGGGCATGTTATAACCAATGATAAAAATTCTGGAGGGAAAATAGTCTGCCTTAACAATGCCAATATTGCTCTCAGGGTATAAAGTATATTGTTTTGCTAAACTGTCTAGTGCCTTAATAGCTGTGTGTGCTTCGTTTATAACTATTATTATGGGATAAAGTTCCTTTTTCTGATGTAGATTGGCTGGCTGAATGCAATTAGGGAGTGGCAAGAAGAGTTCGTTGGAAACATGAGTTCTAGGGAATTTGTGGACACTATTACCAGAGATCTGTTGGGCAGTCGTGTCTTTGTGTTTACACCTGGAGGAGAGGTAACTTTGTTGTGTTTTTCTACTCAATTTGTTACCCTTTTTTTGAGTCCTGTTACATCATAGCTATACCACTTTACTATATTTGCAGATAAAA-CATCTCCCAAAGGGGGCTACTGTCATTGATTATGCGTATATGATACACACTGAAATTGG-CAATAAA</genome_strand>
        <mrna_strand>CCTTTCAATAAATGAAGTAAACCAAATTGCACAG............................................................................................CTTCGAATTATTATAAAACCAAAGCCTTGTGTCGGAGTTAGGCCCCTTTGCAGTGCACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTATCATCTGCTTGGACTAGTACATGGAATCTGGACACCTATCCCTCGTGCT.......................................................................................ATGAAAGACTACATTGCCACCCCTAAGCCTAATGGCTATCAAAGTCTTCATACAACTGTGATTCCATTTCTTTATGAGAGCATGTTTCGTTTGGAGGTTCAG............................................................................................................................................................................................................................................................................................................................................ATAAGAACTGAAGAGATGGACCTCATAGCTGAAAGAGGCATTGCTGCACATTATAGTGGGAAAGGTTTTGTAAATGGTTTAGTTGGGCATGTTATAACCAATGATAAAAGTTCTGGAGGGAAAATAGTCTGCCTTAACAATGCCAATATTGCTCTCAGG......................................................................................................ATTGGCTGGCTGAATGCAATTAGGGAGTGGCAAGAAGAGTTCGTTGGAAACATGAGCTCTAGGGAATTTGTGGACACTGTTACCAGAGATCTGTTGGGCAGCCGTGTATTTGTGTTTACACCCGGAGGAGAG........................................................................................ATAAAACCATCTCCCAAAGGGGGCTACTGTCATTGATTATGCGTATATGATACACACTGAAATCGGCCAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317730" ref_strand="+" ref_description="SGN-E317730 [cTOA-30-A17]">
      <seq>ttaggcaaatgtttctttccatgacagaggaggtccgtgttataattgtcaaattagctgatagattacataacatgcgcactctttcacatatgcctccacacaagcagtctggaatagcaacagagacgctgcaggtttttgctcctttggcaaaacttctcggaatataccaaatcaagtcagagcttgaaaacttggcatttatgtatacaaatgctcaagactatgccagggtgcagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="26727" stop="25246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26427" g_stop="26396" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26395" i_stop="26322" i_length="74">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26321" g_stop="26244" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26243" i_stop="26164" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26163" g_stop="26092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="182" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26091" i_stop="25609" i_length="483">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25608" g_stop="25546" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="245" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E317730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26427" e_stop="26396"/>
          <exon e_start="26321" e_stop="26244"/>
          <exon e_start="26163" e_stop="26092"/>
          <exon e_start="25608" e_stop="25546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGCAAATGTTTCTTTCCATGACAGAGGAGGTAATGCCTCTAATAACTTGCACAAATTTTGTTACTTTCTTCACAATCCCTTACTTCAAATGTTTATGTTTCAGGTCCGTGTTATAATTGTCAAATTAGCTGATAGATTACATAACATGCGCACTCTTTCACATATGCCTCCACACAAGCAGGTATATAGATGGTATTTTTTCCTTTTTCTGCCTGTTTCTATCTAATCTCTAACAATCTTGCTGCTCTATGTCCCCTTCAGTCTGGAATAGCAACAGAGACGCTGCAGGTTTTTGCTCCTTTGGCAAAACTTCTCGGAATATACCAAATCAAGGTTTCTCCTTAGTCTTACTTGCTTTGACATGCCTAAGATATGTCCCAAACTGAAAATTCCTTTTCTTCTTCCTTCCTTCTCGTGATTGGTTGTGTGGCCTTTAGAACTGTATAGCTGTTAATGTATATGAAGGATCTCATTTTCTTAATCTTTTTGCTGGATCTGCTTAATGATAGTAATGCTTGTGCATATTATAAGTGCTATGTAATCAAGATCTGCGAAGAGACAGATAATGCAGCTCAAGTGATTTTCATTCTAGTCCTCAGTTTATAAATTTTTGCATCTGCCATCTAGTAGCCTCCTTTATCCTAGATGGAATGGAACTGTGTTTCTTTTGCCTGGTGAGAGAGTTGGGGCTGGGTGGGTCACTTCCTTTGGAAGTTAAAGACGCTTGACATTTTGGACTAACTGTTGCTTGTTTCATTATGTACGGTTACTTTTCTTCCAACAAATATTCTAAACATGTGACTTCTCATCATGCAGTCAGAGCTTGAAAACTTGGCATTTATGTATACAAATGCTCAAGACTATGCCAGGGTGCAGCGC</genome_strand>
        <mrna_strand>TTAGGCAAATGTTTCTTTCCATGACAGAGGAG..........................................................................GTCCGTGTTATAATTGTCAAATTAGCTGATAGATTACATAACATGCGCACTCTTTCACATATGCCTCCACACAAGCAG................................................................................TCTGGAATAGCAACAGAGACGCTGCAGGTTTTTGCTCCTTTGGCAAAACTTCTCGGAATATACCAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGCTTGAAAACTTGGCATTTATGTATACAAATGCTCAAGACTATGCCAGGGTGCAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736566" ref_strand="+" ref_description="SGN-E736566 [LC06BB04]">
      <seq>ctaatttctctgaattctacaattttcgcccgaccgcaatcgcagcagcagtagctttgaatgctaatcatcttttgatcctcttcactcgctgtgattttaccatctctctccggccgaatatgtttatgtatctgttgcatctttgtatttccagacgaacgaggttttgttccggttcgcttgatttttcttaagcgcttgcttccaattcttcttctcttctgtgtaccgatgcttttaaatagacatggctactgctacttcaatgtcagtttctatcgaatgtgtgaatatatgtaagtcttggaaaggagatgtgagtggaagactcgactgtagtgcgttatcttgtgcctggaaggcaccaagagccttgactgggttccttgcaagcacaactcatcctactcagtgttcctctactccttttgggcgatatggaagacgagatcgtctccgccgatgtagatgttatgatgtggatgaacgctatcctgttgaagttctgcgaggggtccctggctcaatgcttctactatctgcttctagcaaatggaaattgtgttgctcttcatcattttcttcagagttgtatgaagagatatctcctgaaagtttgtgggaggatcttaaacctactatttcatatctttcttgcaaggaattggaattggttcgtaaggctttgaatcttgcttttgaggcacatgatggtcaaaagcgtcgtagtggcgagccctttattgttcacccagttgcagttgcacagatccttggacagcttgaattggattgggagtcggttgctgctgggttattacatgatactgtaaaagacacagatgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="30740" stop="26388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30481" g_stop="30213" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.829"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30212" i_stop="29521" i_length="692">
            <donor d_prob="0.929" d_score="0.94"/>
            <acceptor a_prob="0.726" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29520" g_stop="29327" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="469" r_length="194" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29326" i_stop="27792" i_length="1535">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27791" g_stop="27627" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="628" r_length="159" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27626" i_stop="27167" i_length="460">
            <donor d_prob="0.848" d_score="0.94"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27166" g_stop="27101" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="694" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27100" i_stop="26924" i_length="177">
            <donor d_prob="0.833" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26923" g_stop="26831" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="787" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26830" i_stop="26752" i_length="79">
            <donor d_prob="0.612" d_score="0.94"/>
            <acceptor a_prob="0.513" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26751" g_stop="26688" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="851" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E736566" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30481" e_stop="30213"/>
          <exon e_start="29520" e_stop="29327"/>
          <exon e_start="27791" e_stop="27627"/>
          <exon e_start="27166" e_stop="27101"/>
          <exon e_start="26923" e_stop="26831"/>
          <exon e_start="26751" e_stop="26688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTCTCTGAATTCCACAATGTTTGCCTGACTGCAATCGCAGCA--AGCAGCTCTGAATGCGAATCATCTTTTGATTACCTTTCACTCGCTGTGATTTT---A---CTCTCCGGCCGAATATGTTTATGTATCTGCTGCATCTTTGTGTTTCCAAACGAGCCAGTTTTTGTTCCGGTTGGCTTGAATTTCCTTAAGTGCCTGCGTTTCAATTCTTCTTCTCTACTGTGTACCGATGCTTTTGAATAGACATGGCTTTTGCTACTTCAATGTCAGGTAATCACTGCGATTATGAATTTCATTTCATTGTGCTAAAATGGTGTGTTAATCAATTGATACATACACCTTAATAATGATTTAGTCGAGCTCAGGCTATTTAGGTTACCTAAAGTTTATTTCATTCTACTGCTAAATAATTTGTGTTGCAAGGACAAAATTAGAGGTTTACAGTAGCTGGAGGTTCACTAAATATACTAATATACTTCTGGAGCTAATACGAATGATGTGTGAACATTCACGTGTCAGTCAATTGATACATACGCCTTAATTGCAAAATAGTTGAGCTCGGGTTATTTAAGTTATGCAAGTATATTTCATTCCACTGCTATACAATTTGTGTTGCAAGGGAAAATTAGAGGTTTTTCGTCTCTGGAGGTTCACTAAAGCTACTTATAATTACTCGCAGAGCTAACATGAATGAAGTTGATCCATTTATTAGTTTCATTTTGTGTGAATGGTGTGTCAATCAATTGATATATACACCTTAATTGTGAATTAGTCAAGCTCAGGTTATTTAGTTATGTGAAGTCTATTCCATTTGTTTTCATTCCATTGCTAAATGATTTGTTTTGCAATGAAAAAATAGATTTTCTTTTTGTAACTGGAGGTTCGCTAAATATACTGAAATTGCTCGTCAGACATTGGAGGTTACGTGAATGATGTATGAATTTGTTAAAATTTCAATGCAGTTTCTATCGAATGTATGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGTGTTATCTTGTGCCTGGAAGGCGCCAAGGGCCTTGACTGGGTTCCTTGCCAGCACAACTCATCCTTCTCAGTGTTCCTCTACTCCTTTTGAGCGATATGGAAGAACAGATCGTCTCCGCCGATGTGTAAGTTTACTCACCTCCCAACTTACACCTGTCTGAAATTAATCTCATTGTGTGAAAGAAAATTTGAGTCCAAAAGGCTTTATTTTAGTGAGAGTTAATGGTCAAAAACACACTTAAACATTTTGAATGAGTTCCGTACCTCAACTATCCATTGTTCTCTTTGTCTACCTAAACTATTTGTCCCTTTGTATGAAAACACACCTCAACTCTTCGTTGGCCAAATATTTGTTCCCAATCGACAACATGTGTGTGTAGACCAACTCAACATCGAGGTTGGTTTTAATAAAAAGGAGTGATGGTTAGGGTATGAAACTATCGAATAGATGATTGTTTAGGTAGCTTCATATAACAATGGATATTTGAGGTATGAAACTCACGAAGAAGTAATATCTTAGGTGTTCTTTTACCATTATCCCTTTAGCTTCAGATGCTTTGCTGCCTTGCACTTCAATAAAACTTGTCGGCCATTCACGTTTTGCCTGGGATAGTCACTTTTTTCTGGCGAGTCAGAGGATTGATTTGCTATGAATTGGTCTTTTTCTTTTTATGTTTGCTTTTGTTTATGGTTAAATTAATAGTCTTTGCTAGAGGAGTGTGTAGGAAATTTGGTGGTAACTGCAGCAGGTTTCATTCATTTATAAATAATCTTTTGCAAATTTAAATCCTTTATATTGCGTTACTTATCTGTGGAACATGTGGAGAAATCTGAGAATCCAATTCAGAACTTTAAGGCAACGGATGTAGTTGCAAAAGATTTATAGAGACTCACTTTAATGTCTTTGATACCCATTGTGGCATGTTTCTATATAGCTCAACAACCTTCCATATGTAACTCAATTTGGAGTTCACATGTAGACTTGAATTGGGACTTACAAATGTAAGATGAACTTCGTAAAGGTTGAGTTTGATATCATATAAAAGATTTTAAGCATCTAACTCGAAACCTTAAGGAGTCGTTTGGATTGTGCACTCATATATTCCTCGTGCGGCCTTTGGTTTTTTCTGTTTAAACCTAGCTAGGCTTGATGAATGAGGTAAGAAAAGGTAAAAAGAGAAGATTCTGTATCTTAAGAATTTCTTTTGTTGGTTAAAGTTTCAGTGGACCTTAATAGAGTGTTTTGTATGACAGAACTCATTTAATGTACCCCAACCAAATTGGAATTGAGATGTAATTGTGTGAAAGTTTCTGATATACAACATCTGCTCTTCTTCAACACTAATGCCTAACATAGCCTAGTGCTAAATGTCATAGAGATTCATAAAATGACACGTTAGAGAAATAGAAATGGGTATACTGTGCAAATACATGGATATGCCTTTGATTTTGGACCCTATATAGTTTGCCAAAACCCTTTTCTCGATAGCTGAGTTAATGAGTTTAAGCTTGATTCACGTAGACATGTATATTTTTCTTTGAGCACACATAATATATGTTTTTATTGAGAAGTTATACATAAATGTTTATAGTGATTTTCTTGAGAAGCAATGTTATATCTATCACATTCTTTTATCTTACTAGTTTTTACTTGTGGCAGAGATGTTATACTTCTGATATGGATGAACGCTACCCTGTTGAAGTTCTGCGAGGAGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAACTGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTCATTTGAAGAGATATCTCCTGAAAGTTTGTGGGAGGTTTGTGATCCTCTAGCTATAAATCATCTCTGATTCCTGGCATCATCGACAAAGCTTGGCTAAATATTTACTCTCCGTCATGATGAAAAGATCATGAATTGTGATAAATAGTTACTTTTGTTTGAAACTAGGATTTACCAGTTGTGAATAAGAAAAATTTTTCTGGAAGGAATCAATGGGAAATTTTAAACTGCTAAATGTTCTGACTAGAAGTAGAAAGCCCAATCCAGTCTCAGAACATGTAATTCACATTCTAATGTTGTTCTTTTCCCATACATAAAACTTTCATTTCTTTCAATGTTGAATCTAAAGCAGGTGCGGTCTTTAGTGTGCATTTCTTACTACATTAATTGAAGATACAGAACAACCTCTCACTTCTAAGTGCTTGAATTTTATGGTCATTGGCTAACAAGTGTATGCTATGTCAGTATCTTGCTAATGTCAGTTATCTGTTGTGCAGGATCTTAAACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTAATAAGGCTTTGAATGTAAGTATATTCCCATATCATCAACATTCAACATAATTGATCTTCTCCTCGGCTTTGAATTCCTTTCTCCTTTTGTCTTTGCAAGATAAGCATCTGTTACCAAATACTTGGTATGCCATAATCTCTATCTAAATCACTATATTAAAAGAAACTCTTATCTACCGGTCATTATTACAGCTTGCTTTTGAGGCACATGATGGTCAAAAGCGTCGTAGTGGAGAGCCCTTCATTATTCACCCAATTGCAGTTGCACAGATCCTTGGACAGCTTGTACGTTGTGTGGAACTATTGTACTCTTTTGGCTAGGAAGGGATAAACTGACTTTAACTTTTCTTTTCTCTATTTTGAGGAATTGGATTGGGAGTCGGTTGCTGCTGGGCTATTACATGATACTGTAGAAGACACAGATGTAG</genome_strand>
        <mrna_strand>CTAATTTCTCTGAATTCTACAATTTTCGCCCGACCGCAATCGCAGCAGCAGTAGCTTTGAATGCTAATCATCTTTTGA-TCCTCTTCACTCGCTGTGATTTTACCATCTCTCTCCGGCCGAATATGTTTATGTATCTGTTGCATCTTTGTATTTCCAGACGAACGAGGTTTTGTTCCGGTTCGCTTGATTTTTCTTAAGCGCTTGC-TTCCAATTCTTCTTCTCTTCTGTGTACCGATGCTTTTAAATAGACATGGCTACTGCTACTTCAATGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTATCGAATGTGTGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGCGTTATCTTGTGCCTGGAAGGCACCAAGAGCCTTGACTGGGTTCCTTGCAAGCACAACTCATCCTACTCAGTGTTCCTCTACTCCTTTTGGGCGATATGGAAGACGAGATCGTCTCCGCCGATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATG-T-TA----TGATGTGGATGAACGCTATCCTGTTGAAGTTCTGCGAGGGGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAAATGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTTGTATGAAGAGATATCTCCTGAAAGTTTGTGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTAAACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTCGTAAGGCTTTGAAT.................................................................................................................................................................................CTTGCTTTTGAGGCACATGATGGTCAAAAGCGTCGTAGTGGCGAGCCCTTTATTGTTCACCCAGTTGCAGTTGCACAGATCCTTGGACAGCTT...............................................................................GAATTGGATTGGGAGTCGGTTGCTGCTGGGTTATTACATGATACTGTAAAAGACACAGATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729572" ref_strand="+" ref_description="SGN-E729572 [LA21BH04]">
      <seq>ctgatttctctgaattccacaatgtttgcctgactgcaatcgcagcaagcagctctgaatgcgaatcatcttttgattacctttcactcgctgtgattttactctccggccgaatatgtttatgtatctgctgcatctttgtgtttccaaacgagccagtttttgttccggttggcttgaatttccttaagtgcctgcgtttcaattcttcttctctactgtgtaccgatgcttttgaatagacatggcttttgctacttcaatgtcagtttctatcgaatgtatgaatatatgtaagtcttggaaaggagatgtgagtggaagactcgactgtagtgtgttatcttgtgcctggaaggcgccaagggccttgactgggttccttgccagcacaactcatccttctcagtgttcctctactccttttgagcgatatggaagaacagatcgtctccgccgatgtagatgttatacttctgatatggatgaacgctaccctgttgaagttctgcgaggagtccctggctcaatgcttctactatctgcttctagcaactggaaattgtgttgctcttcatcattttcttcagagtcatttgaagagatatctcctgaaagtttgtgggaggatcttanacctactatttcatatctttcttgcaaggaattggaattggttaataaggctttgaattcattattacaacttgcttttgaagcacatgatggtcaaaagcgtcgtagtggagagcccttcattattcacccaattgcagttgcacagatccttggacagcttgaattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="30781" stop="26528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30481" g_stop="30213" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30212" i_stop="29521" i_length="692">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29520" g_stop="29327" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="463" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29326" i_stop="27792" i_length="1535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27791" g_stop="27627" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="628" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27626" i_stop="27167" i_length="460">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27166" g_stop="27101" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="694" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27100" i_stop="26936" i_length="165">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26935" g_stop="26831" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="799" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26830" i_stop="26752" i_length="79">
            <donor d_prob="0.612" d_score="1.00"/>
            <acceptor a_prob="0.513" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26751" g_stop="26743" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="808" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E729572" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30481" e_stop="30213"/>
          <exon e_start="29520" e_stop="29327"/>
          <exon e_start="27791" e_stop="27627"/>
          <exon e_start="27166" e_stop="27101"/>
          <exon e_start="26935" e_stop="26831"/>
          <exon e_start="26751" e_stop="26743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTCTCTGAATTCCACAATGTTTGCCTGACTGCAATCGCAGCAAGCAGCTCTGAATGCGAATCATCTTTTGATTACCTTTCACTCGCTGTGATTTTACTCTCCGGCCGAATATGTTTATGTATCTGCTGCATCTTTGTGTTTCCAAACGAGCCAGTTTTTGTTCCGGTTGGCTTGAATTTCCTTAAGTGCCTGCGTTTCAATTCTTCTTCTCTACTGTGTACCGATGCTTTTGAATAGACATGGCTTTTGCTACTTCAATGTCAGGTAATCACTGCGATTATGAATTTCATTTCATTGTGCTAAAATGGTGTGTTAATCAATTGATACATACACCTTAATAATGATTTAGTCGAGCTCAGGCTATTTAGGTTACCTAAAGTTTATTTCATTCTACTGCTAAATAATTTGTGTTGCAAGGACAAAATTAGAGGTTTACAGTAGCTGGAGGTTCACTAAATATACTAATATACTTCTGGAGCTAATACGAATGATGTGTGAACATTCACGTGTCAGTCAATTGATACATACGCCTTAATTGCAAAATAGTTGAGCTCGGGTTATTTAAGTTATGCAAGTATATTTCATTCCACTGCTATACAATTTGTGTTGCAAGGGAAAATTAGAGGTTTTTCGTCTCTGGAGGTTCACTAAAGCTACTTATAATTACTCGCAGAGCTAACATGAATGAAGTTGATCCATTTATTAGTTTCATTTTGTGTGAATGGTGTGTCAATCAATTGATATATACACCTTAATTGTGAATTAGTCAAGCTCAGGTTATTTAGTTATGTGAAGTCTATTCCATTTGTTTTCATTCCATTGCTAAATGATTTGTTTTGCAATGAAAAAATAGATTTTCTTTTTGTAACTGGAGGTTCGCTAAATATACTGAAATTGCTCGTCAGACATTGGAGGTTACGTGAATGATGTATGAATTTGTTAAAATTTCAATGCAGTTTCTATCGAATGTATGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGTGTTATCTTGTGCCTGGAAGGCGCCAAGGGCCTTGACTGGGTTCCTTGCCAGCACAACTCATCCTTCTCAGTGTTCCTCTACTCCTTTTGAGCGATATGGAAGAACAGATCGTCTCCGCCGATGTGTAAGTTTACTCACCTCCCAACTTACACCTGTCTGAAATTAATCTCATTGTGTGAAAGAAAATTTGAGTCCAAAAGGCTTTATTTTAGTGAGAGTTAATGGTCAAAAACACACTTAAACATTTTGAATGAGTTCCGTACCTCAACTATCCATTGTTCTCTTTGTCTACCTAAACTATTTGTCCCTTTGTATGAAAACACACCTCAACTCTTCGTTGGCCAAATATTTGTTCCCAATCGACAACATGTGTGTGTAGACCAACTCAACATCGAGGTTGGTTTTAATAAAAAGGAGTGATGGTTAGGGTATGAAACTATCGAATAGATGATTGTTTAGGTAGCTTCATATAACAATGGATATTTGAGGTATGAAACTCACGAAGAAGTAATATCTTAGGTGTTCTTTTACCATTATCCCTTTAGCTTCAGATGCTTTGCTGCCTTGCACTTCAATAAAACTTGTCGGCCATTCACGTTTTGCCTGGGATAGTCACTTTTTTCTGGCGAGTCAGAGGATTGATTTGCTATGAATTGGTCTTTTTCTTTTTATGTTTGCTTTTGTTTATGGTTAAATTAATAGTCTTTGCTAGAGGAGTGTGTAGGAAATTTGGTGGTAACTGCAGCAGGTTTCATTCATTTATAAATAATCTTTTGCAAATTTAAATCCTTTATATTGCGTTACTTATCTGTGGAACATGTGGAGAAATCTGAGAATCCAATTCAGAACTTTAAGGCAACGGATGTAGTTGCAAAAGATTTATAGAGACTCACTTTAATGTCTTTGATACCCATTGTGGCATGTTTCTATATAGCTCAACAACCTTCCATATGTAACTCAATTTGGAGTTCACATGTAGACTTGAATTGGGACTTACAAATGTAAGATGAACTTCGTAAAGGTTGAGTTTGATATCATATAAAAGATTTTAAGCATCTAACTCGAAACCTTAAGGAGTCGTTTGGATTGTGCACTCATATATTCCTCGTGCGGCCTTTGGTTTTTTCTGTTTAAACCTAGCTAGGCTTGATGAATGAGGTAAGAAAAGGTAAAAAGAGAAGATTCTGTATCTTAAGAATTTCTTTTGTTGGTTAAAGTTTCAGTGGACCTTAATAGAGTGTTTTGTATGACAGAACTCATTTAATGTACCCCAACCAAATTGGAATTGAGATGTAATTGTGTGAAAGTTTCTGATATACAACATCTGCTCTTCTTCAACACTAATGCCTAACATAGCCTAGTGCTAAATGTCATAGAGATTCATAAAATGACACGTTAGAGAAATAGAAATGGGTATACTGTGCAAATACATGGATATGCCTTTGATTTTGGACCCTATATAGTTTGCCAAAACCCTTTTCTCGATAGCTGAGTTAATGAGTTTAAGCTTGATTCACGTAGACATGTATATTTTTCTTTGAGCACACATAATATATGTTTTTATTGAGAAGTTATACATAAATGTTTATAGTGATTTTCTTGAGAAGCAATGTTATATCTATCACATTCTTTTATCTTACTAGTTTTTACTTGTGGCAGAGATGTTATACTTCTGATATGGATGAACGCTACCCTGTTGAAGTTCTGCGAGGAGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAACTGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTCATTTGAAGAGATATCTCCTGAAAGTTTGTGGGAGGTTTGTGATCCTCTAGCTATAAATCATCTCTGATTCCTGGCATCATCGACAAAGCTTGGCTAAATATTTACTCTCCGTCATGATGAAAAGATCATGAATTGTGATAAATAGTTACTTTTGTTTGAAACTAGGATTTACCAGTTGTGAATAAGAAAAATTTTTCTGGAAGGAATCAATGGGAAATTTTAAACTGCTAAATGTTCTGACTAGAAGTAGAAAGCCCAATCCAGTCTCAGAACATGTAATTCACATTCTAATGTTGTTCTTTTCCCATACATAAAACTTTCATTTCTTTCAATGTTGAATCTAAAGCAGGTGCGGTCTTTAGTGTGCATTTCTTACTACATTAATTGAAGATACAGAACAACCTCTCACTTCTAAGTGCTTGAATTTTATGGTCATTGGCTAACAAGTGTATGCTATGTCAGTATCTTGCTAATGTCAGTTATCTGTTGTGCAGGATCTTAAACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTAATAAGGCTTTGAATGTAAGTATATTCCCATATCATCAACATTCAACATAATTGATCTTCTCCTCGGCTTTGAATTCCTTTCTCCTTTTGTCTTTGCAAGATAAGCATCTGTTACCAAATACTTGGTATGCCATAATCTCTATCTAAATCACTATATTAAAAGAAACTCTTATCTACCGGTCATTATTACAGCTTGCTTTTGAGGCACATGATGGTCAAAAGCGTCGTAGTGGAGAGCCCTTCATTATTCACCCAATTGCAGTTGCACAGATCCTTGGACAGCTTGTACGTTGTGTGGAACTATTGTACTCTTTTGGCTAGGAAGGGATAAACTGACTTTAACTTTTCTTTTCTCTATTTTGAGGAATTGGAT</genome_strand>
        <mrna_strand>CTGATTTCTCTGAATTCCACAATGTTTGCCTGACTGCAATCGCAGCAAGCAGCTCTGAATGCGAATCATCTTTTGATTACCTTTCACTCGCTGTGATTTTACTCTCCGGCCGAATATGTTTATGTATCTGCTGCATCTTTGTGTTTCCAAACGAGCCAGTTTTTGTTCCGGTTGGCTTGAATTTCCTTAAGTGCCTGCGTTTCAATTCTTCTTCTCTACTGTGTACCGATGCTTTTGAATAGACATGGCTTTTGCTACTTCAATGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTATCGAATGTATGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGTGTTATCTTGTGCCTGGAAGGCGCCAAGGGCCTTGACTGGGTTCCTTGCCAGCACAACTCATCCTTCTCAGTGTTCCTCTACTCCTTTTGAGCGATATGGAAGAACAGATCGTCTCCGCCGATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTTATACTTCTGATATGGATGAACGCTACCCTGTTGAAGTTCTGCGAGGAGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAACTGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTCATTTGAAGAGATATCTCCTGAAAGTTTGTGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTANACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTAATAAGGCTTTGAAT.....................................................................................................................................................................TCATTATTACAACTTGCTTTTGAAGCACATGATGGTCAAAAGCGTCGTAGTGGAGAGCCCTTCATTATTCACCCAATTGCAGTTGCACAGATCCTTGGACAGCTT...............................................................................GAATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687840" ref_strand="+" ref_description="SGN-E687840 [T3_tus_81_E19]">
      <seq>attaccatcatggcagacgatttcggttctcatgcttcttctgagttctccaacaccagagtctctgaaaattctaagaagcttaatgtgtgtgcctctgaaactcaagaatccaatacccatgatgaatccatcaagaaaaatgatgaagagaagaaagatgatgggtctgtgaggtgttcactcaagattgaagtaattgatgatacagcaatgattgatatttctcaagttggaaaaagttgctcaattgataaaaattttgatggaaaatctggaagaaataggaagaaaaagaatgcaaatcaaatggttacggttaaagcaaaagataggaaaatcgaagaaaagaatgtgaatggcggctgtaaaataaatggaggagaagagaagagggtttactgtagaaaggagttggaaaatttgaggtttgttggaatggaacaacagaggaaaatgtgggttgagctgtactgtgggcttggtgataccgtgcaaaaggagtatgatggcctcgttgactctaatacgcaaaagcacatccgcctgtctcgaagtcgcaggcacattggtaaagaaaatacccccgtcatttctggtgttttggcagcaaaagaacgaggaaaacatatgaaagtttatacacaaagaggcatgacatatatgaatctgcagaacactttatgtttacctggncattangtctttagtatttgtcccagttcgtgataaagggttgaaggaggaagcatttcctatcattgtccaatacctctgctgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="42190" stop="40357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41890" g_stop="41293" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41292" i_stop="40842" i_length="451">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40841" g_stop="40657" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="783" r_length="185" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E687840" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41890" e_stop="41293"/>
          <exon e_start="40841" e_stop="40657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCATCATGGCAGACGATTTCGGTTCTCATGCTTCTTCTGAGTTCTCCAACACCAGAGTCTCTGAAAATTCTAAGAAGCTTAATGTGTGTGCCTCTGAAACTCAAGAATCCAATACCCATGATGAATCCATCAAGAAAAATGATGAAGAGAAGAAAGATGATGGGTCTGTGAGGTGTTCACTCAAGATTGAAGTAATTGATGATACAGCAATGATTGATATTTCTCAAGTTGGAAAAAGTTGCTCAATTGATAAAAATTTTGATGGAAAATCTGGAAGAAATAGGAAGAAAAAGAATGCAAATCAAATGGTTACGGTTAAAGCAAAAGATAGGAAAATCGAAGAAAAGAATGTGAATGGCGGCTGTAAAATAAATGGAGGAGAAGAGAAGAGGGTTTACTGTAGAAAGGAGTTGGAAAATTTGAGGTTTGTTGGAATGGAACAACAGAGGAAAATGTGGGTTGAGCTGTACTGTGGGCTTGGTGATACCGTGCAAAAGGAGTATGATGGCCTCGTTGACTCTAATACGCAAAAGCACATCCGCCTGTCTCGAAGTCGCAGGCACATTGGTAAAGAAAATACCCCCGTCATTTCTGGTGCGTATTTTTGTCTTCCTTGTTGAATAGTGGTGGCGACCAATGCTGTTTTTTGTTCTTGATAGTATAATTTGCAGTGTTTCTGAAACTGACAGTAAAGATAACAATAATGGAGAAAAACAACTTATAAGGAAACAGTAGCAACCACAAAATAATGTGATACCCTAAACACAATCAACAAGAAGTGATGGTGGAATTAAAAGCAATACACTATAAGAATATGGCTTACCCCTCGAAAATTAAGTCAACAATCCATACCTACTAACCTTCTACCCTAATACCAACCTTCAGGCAAGTGCAAGTTTAGATGCAACTTTGGTGATATTGTGGATAATATACTCTTGACATCATATAATTACTCTATTTCTTGCCTTCATGCATTGTTTGCTTCCCTACACATTCTGTTGTGGTTGTTTCAATTTGATGGGTTCCTAAATTTCTGTTGGCACAGGTGTTTTGGCAGCAAAAGAACGAGGAAAACATATGAAAGTTTATACACAAAGAGGCATGACATATATGAATCTGCAGAACACTTTATGTTTACCTGGCCATTAGGTCTTTAGTATTGTCCCCAGTTCGTGATAAAGGGTTGAAGGAGGAAGCATTTCTAATCATTGTCCAATACCTCTGCTGTAC</genome_strand>
        <mrna_strand>ATTACCATCATGGCAGACGATTTCGGTTCTCATGCTTCTTCTGAGTTCTCCAACACCAGAGTCTCTGAAAATTCTAAGAAGCTTAATGTGTGTGCCTCTGAAACTCAAGAATCCAATACCCATGATGAATCCATCAAGAAAAATGATGAAGAGAAGAAAGATGATGGGTCTGTGAGGTGTTCACTCAAGATTGAAGTAATTGATGATACAGCAATGATTGATATTTCTCAAGTTGGAAAAAGTTGCTCAATTGATAAAAATTTTGATGGAAAATCTGGAAGAAATAGGAAGAAAAAGAATGCAAATCAAATGGTTACGGTTAAAGCAAAAGATAGGAAAATCGAAGAAAAGAATGTGAATGGCGGCTGTAAAATAAATGGAGGAGAAGAGAAGAGGGTTTACTGTAGAAAGGAGTTGGAAAATTTGAGGTTTGTTGGAATGGAACAACAGAGGAAAATGTGGGTTGAGCTGTACTGTGGGCTTGGTGATACCGTGCAAAAGGAGTATGATGGCCTCGTTGACTCTAATACGCAAAAGCACATCCGCCTGTCTCGAAGTCGCAGGCACATTGGTAAAGAAAATACCCCCGTCATTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGGCAGCAAAAGAACGAGGAAAACATATGAAAGTTTATACACAAAGAGGCATGACATATATGAATCTGCAGAACACTTTATGTTTACCTGGNCATTANGTCTTTAGTATTTGTCCCAGTTCGTGATAAAGGGTTGAAGGAGGAAGCATTTCCTATCATTGTCCAATACCTCTGCTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327402" ref_strand="+" ref_description="SGN-E327402 [cTOC-19-E22]">
      <seq>ttaccatcatggcagacgatttcggttctcatgcttcttctgagttctccaacaccagagtctctgaaaattctaagaagcttaatgtgtgtgcctctgaaactcaagaatccaatacccatgatgaatccatcaagaaaaatgatgaagagaagaaagatgatgggtctgtgaggtgttcactcaagattgaagtaattgatgatacagcaatgattgatatttctcaagttggaaaaagttgctcaattgataaaaattttgatggaaaatctggaagaaataggaagaaaaagaatgcaaatcaaatggttacggttaaagcaaaagataggaaaatcgaagaaaagaatgtgaatggcggctgtaaaataaatggaggagaagagaagagggtttactgtagaaaggagttggaaaatttgaggtttgttggaatggaacaacagaggaaaatgtgggttgagctgtactgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="42189" stop="41113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41889" g_stop="41413" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E327402" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41889" e_stop="41413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCATCATGGCAGACGATTTCGGTTCTCATGCTTCTTCTGAGTTCTCCAACACCAGAGTCTCTGAAAATTCTAAGAAGCTTAATGTGTGTGCCTCTGAAACTCAAGAATCCAATACCCATGATGAATCCATCAAGAAAAATGATGAAGAGAAGAAAGATGATGGGTCTGTGAGGTGTTCACTCAAGATTGAAGTAATTGATGATACAGCAATGATTGATATTTCTCAAGTTGGAAAAAGTTGCTCAATTGATAAAAATTTTGATGGAAAATCTGGAAGAAATAGGAAGAAAAAGAATGCAAATCAAATGGTTACGGTTAAAGCAAAAGATAGGAAAATCGAAGAAAAGAATGTGAATGGCGGCTGTAAAATAAATGGAGGAGAAGAGAAGAGGGTTTACTGTAGAAAGGAGTTGGAAAATTTGAGGTTTGTTGGAATGGAACAACAGAGGAAAATGTGGGTTGAGCTGTACTGTG</genome_strand>
        <mrna_strand>TTACCATCATGGCAGACGATTTCGGTTCTCATGCTTCTTCTGAGTTCTCCAACACCAGAGTCTCTGAAAATTCTAAGAAGCTTAATGTGTGTGCCTCTGAAACTCAAGAATCCAATACCCATGATGAATCCATCAAGAAAAATGATGAAGAGAAGAAAGATGATGGGTCTGTGAGGTGTTCACTCAAGATTGAAGTAATTGATGATACAGCAATGATTGATATTTCTCAAGTTGGAAAAAGTTGCTCAATTGATAAAAATTTTGATGGAAAATCTGGAAGAAATAGGAAGAAAAAGAATGCAAATCAAATGGTTACGGTTAAAGCAAAAGATAGGAAAATCGAAGAAAAGAATGTGAATGGCGGCTGTAAAATAAATGGAGGAGAAGAGAAGAGGGTTTACTGTAGAAAGGAGTTGGAAAATTTGAGGTTTGTTGGAATGGAACAACAGAGGAAAATGTGGGTTGAGCTGTACTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364838" ref_strand="-" ref_description="SGN-E364838 [cLPT-4-M2]">
      <seq>tgctacgatcagaaaactcttttcgtatgtaaatcctttatcttaccttggtggaagttataacacatcaaacactgctcgagatagcatatggcaatatggtccaaactcatccgcgcctcaaaataatcagagcctggtaagtataacttccacaactaatatcagaggtagaaagcgagcgtcatctagctttgggagcaacatccacactttgaaacatgatgaagatgaaaatcagtctggtgacaaaaacacattttggaatggtaattctactcagtttggtggagatgaataagactttaatgtgtgaataaatattcttcccgttagtcattgtaataagttttggattgaagcctgttcctttacaaaaaatgattggcttaagcataaactgaggagatgcattttatggttagagaatatggatgatgtcttgagcccaaaaaaaaaaaaaaaaaaaaaaacaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="44172" stop="23380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43872" g_stop="43772" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43771" i_stop="43087" i_length="685">
            <donor d_prob="0.780" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43086" g_stop="42732" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="456" r_length="355" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42731" i_stop="42409" i_length="323">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.621" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42408" g_stop="42382" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="483" r_length="27" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E364838" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364838" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43872" e_stop="43772"/>
          <exon e_start="43086" e_stop="42732"/>
          <exon e_start="42408" e_stop="42382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATGGTAGTTTCCTTTCCTTTCTTCTTGACCTCTGTGACAGCTTTACTGCTAGAGAATTAGAAATTAAGGATACGTTCAACAGATTGTATTACTTGCACTTTCTAAGATCAGCTTTCGAGTTGCTTGAATTTTTTTATAAGACTTGCATTAACAGGCACTTTACACCATCATGTTTTTGCTAATACAACAGCGTCGTTTCCAAACATGTAGGGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAAGTGCTTTATCTTATTATCTTTTTTGAACCCCTTGTAAATTTTGGGTTGGTCATGCTGATATATACATGTGTCATGTTAATTTGTTTTTGGTACTGTGTTGTCAATTTATTGCCTCTGACATGTAGGTCCAAACTCATCCACACCTCAAAATAATCAGAGCCTGGTAAGTAAAACTTCCACAACTAATAACAGAGGTAGAAAGCGAGCGTCATCTAGCTTTGGGAGCAACATCCACACCCTGAAACATGATGAAGATGAAAATCAGTCTGGTGACAAAAACACATTCTGGAATGGTAATTCTACTCAGTTTGGTGGAGATGAATAAGACTTTGATGTGTGTATAAATATTCTTCCCGTTAGTCATTGTAATAAGTTTTGGATTGAAGCCTGTTCCTTTACAAAAAATGATTGGCTTAAGCATAAACTGAGGAGATGCATTTTATGGTTAGAGAATATGGATGATGTTTTGAGCACAAATAGGTCTTGTATTTGTTATTCTAACAGAAATTTTGCTCCAAGTCCATCTATTATTGATAGAGTAATGTTCTAATTTTAGCCTAGATTCAGTATTCCAAAGTGCAAACATCTAACTAGTTGTGTATTTTTTAAGTCTACAATCAGCTAACGTCTTTCGCTATGTGCTCTGCTTTGCTTAGTATGGGCTCCTTCGCTTTGAATTTTTTTACATTACTCTCGTGTAATAAATTTATCAACAAGATTTAGCTATGTGTATTTGTCTGACAATAACTAAATGTTTGTCATCTATAAAATTTCTGATTGTTTATTTAACCAACTCTATACAGTAACAATAACAATAATTGATGAATTCA</genome_strand>
        <mrna_strand>TGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTATAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACTCATCCGCGCCTCAAAATAATCAGAGCCTGGTAAGTATAACTTCCACAACTAATATCAGAGGTAGAAAGCGAGCGTCATCTAGCTTTGGGAGCAACATCCACACTTTGAAACATGATGAAGATGAAAATCAGTCTGGTGACAAAAACACATTTTGGAATGGTAATTCTACTCAGTTTGGTGGAGATGAATAAGACTTTAATGTGTGAATAAATATTCTTCCCGTTAGTCATTGTAATAAGTTTTGGATTGAAGCCTGTTCCTTTACAAAAAATGATTGGCTTAAGCATAAACTGAGGAGATGCATTTTATGGTTAGAGAATATGGATGATGTCTTGAGCCCAAAAAA...................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAACAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224764" ref_strand="+" ref_description="SGN-E224764 [cLEL-27-J18](-)">
      <seq>ggtagaaagcgagcgtcatctagctttgggagcaacatccacaccctggaacatgatgaagatgaaaatcagtctggtggcaaaaacacactctggaatggtaattgtactcagtttggtggagatcaataagactttgatgtgtgtataaatattcttcccgttagtcattgtaataagttttggattgaagcctgttcctttacaaaaaatgattggcttaagcataaactgaggaaatgcattttatggttagagaatatggatgatgttttgagcacaaataggtcttgtatttgttattctaacagaaattttgctccaagtccatctattattgatagagtaatgttctaattttagcctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="43318" stop="42350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43018" g_stop="42651" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42650" i_stop="42409" i_length="242">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.621" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42408" g_stop="42394" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="383" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E224764" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43018" e_stop="42651"/>
          <exon e_start="42408" e_stop="42394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGAAAGCGAGCGTCATCTAGCTTTGGGAGCAACATCCACACCCTGAAACATGATGAAGATGAAAATCAGTCTGGTGACAAAAACACATTCTGGAATGGTAATTCTACTCAGTTTGGTGGAGATGAATAAGACTTTGATGTGTGTATAAATATTCTTCCCGTTAGTCATTGTAATAAGTTTTGGATTGAAGCCTGTTCCTTTACAAAAAATGATTGGCTTAAGCATAAACTGAGGAGATGCATTTTATGGTTAGAGAATATGGATGATGTTTTGAGCACAAATAGGTCTTGTATTTGTTATTCTAACAGAAATTTTGCTCCAAGTCCATCTATTATTGATAGAGTAATGTTCTAATTTTAGCCTAGATTCAGTATTCCAAAGTGCAAACATCTAACTAGTTGTGTATTTTTTAAGTCTACAATCAGCTAACGTCTTTCGCTATGTGCTCTGCTTTGCTTAGTATGGGCTCCTTCGCTTTGAATTTTTTTACATTACTCTCGTGTAATAAATTTATCAACAAGATTTAGCTATGTGTATTTGTCTGACAATAACTAAATGTTTGTCATCTATAAAATTTCTGATTGTTTATTTAACCAACTCTATACAGTAACAATAACAATAA</genome_strand>
        <mrna_strand>GGTAGAAAGCGAGCGTCATCTAGCTTTGGGAGCAACATCCACACCCTGGAACATGATGAAGATGAAAATCAGTCTGGTGGCAAAAACACACTCTGGAATGGTAATTGTACTCAGTTTGGTGGAGATCAATAAGACTTTGATGTGTGTATAAATATTCTTCCCGTTAGTCATTGTAATAAGTTTTGGATTGAAGCCTGTTCCTTTACAAAAAATGATTGGCTTAAGCATAAACTGAGGAAATGCATTTTATGGTTAGAGAATATGGATGATGTTTTGAGCACAAATAGGTCTTGTATTTGTTATTCTAACAGAAATTTTGCTCCAAGTCCATCTATTATTGATAGAGTAATGTTCTAATTTTAGCCTAA..................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224544" ref_strand="+" ref_description="SGN-E224544 [cLEL-27-J18](-)">
      <seq>ggtagaaagcgagcgtcatctagctttgggagcaacatccacaccctgaaacatgatgaagatgaaaatcagtctggtgacaaaaacacattctggaatggtaattctactcagtttggtggagatgaataagactttgatgtgtgtataaatattcttcccgttagtcattgtaataagttttggattgaagcctgttcctttacaaaaaatgattggcttaagcataaactgaggagatgcattttatggttagagaatatggatgatgttttgagcacaaataggtcttgtatttgttattctaacagaaattttgctccaagtccatctattattgatagagtaatgttctaattttagcctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="43318" stop="42350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43018" g_stop="42651" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42650" i_stop="42409" i_length="242">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.621" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42408" g_stop="42394" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="383" r_length="15" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E224544" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43018" e_stop="42651"/>
          <exon e_start="42408" e_stop="42394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGAAAGCGAGCGTCATCTAGCTTTGGGAGCAACATCCACACCCTGAAACATGATGAAGATGAAAATCAGTCTGGTGACAAAAACACATTCTGGAATGGTAATTCTACTCAGTTTGGTGGAGATGAATAAGACTTTGATGTGTGTATAAATATTCTTCCCGTTAGTCATTGTAATAAGTTTTGGATTGAAGCCTGTTCCTTTACAAAAAATGATTGGCTTAAGCATAAACTGAGGAGATGCATTTTATGGTTAGAGAATATGGATGATGTTTTGAGCACAAATAGGTCTTGTATTTGTTATTCTAACAGAAATTTTGCTCCAAGTCCATCTATTATTGATAGAGTAATGTTCTAATTTTAGCCTAGATTCAGTATTCCAAAGTGCAAACATCTAACTAGTTGTGTATTTTTTAAGTCTACAATCAGCTAACGTCTTTCGCTATGTGCTCTGCTTTGCTTAGTATGGGCTCCTTCGCTTTGAATTTTTTTACATTACTCTCGTGTAATAAATTTATCAACAAGATTTAGCTATGTGTATTTGTCTGACAATAACTAAATGTTTGTCATCTATAAAATTTCTGATTGTTTATTTAACCAACTCTATACAGTAACAATAACAATAA</genome_strand>
        <mrna_strand>GGTAGAAAGCGAGCGTCATCTAGCTTTGGGAGCAACATCCACACCCTGAAACATGATGAAGATGAAAATCAGTCTGGTGACAAAAACACATTCTGGAATGGTAATTCTACTCAGTTTGGTGGAGATGAATAAGACTTTGATGTGTGTATAAATATTCTTCCCGTTAGTCATTGTAATAAGTTTTGGATTGAAGCCTGTTCCTTTACAAAAAATGATTGGCTTAAGCATAAACTGAGGAGATGCATTTTATGGTTAGAGAATATGGATGATGTTTTGAGCACAAATAGGTCTTGTATTTGTTATTCTAACAGAAATTTTGCTCCAAGTCCATCTATTATTGATAGAGTAATGTTCTAATTTTAGCCTAA..................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745131" ref_strand="+" ref_description="SGN-E745131 [GI|47105997]">
      <seq>gatcgtcaacaaagagtgtctctcgataaaagaagtcagctttggaaaaaaaaatcaattttgtagccaaaaccagactgtcagattttcttttattttgtatttaaatatctttgaattcaacaataaaaggtgaattgggtataatctcttgcttttcttcactaagttaggatctcaaaaattaatatagttatgcagtcattcctagatctttactttctgcacaggcttgcgtttgtttgaactatggattactctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactactttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacagctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatcttgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacatttggaccctagtgatgaagctcctagagagattgcaaataaagcagggaaagaccccgagataaatatagttgaagatgcagctgctgagtcagatgattcgtcaaatatatttcatgatgtttgtttaaacattagattgcctgatggttcaagtttacaagtgaagtttctcgttgtagatactttaaggatggtcaagcactatgttgataaaaaccaaacaagcagcattggttattatgatctagcagttccttatcctcgcaaggtttttggtgatgaagatctagatagaacattgtcagatttgggtttacacaataggcaagcactgataatcgttcttcgtaacaaagtggatgttacatcattgcatggtctaaacaatccggctgagagtaaccatacaacaattggaggcgatgcaggatattttgctacgatcagaaaactcttttcgtatgtaaatcctttatcttaccttggtggaagttctaacacatcaaacactgctcgagatagcatatggcaatatggtccaaactcatccacacctcaaaataatcagagcctggtaagtaaaacttccacaactaataacagaggtagaaagcgagcgtcatctagctttgggagcaacatccacaccctgaaacatgatgaagatgaaaatcagtctggtgacaaaaacacattctggaatggtaattctactcagtttggtggagatgaataagactttgatgtgtgtataaatattcttcccgttagtcattgtaataagttttggattgaagcctgttcctttacaaaaaatgattggcttaagcacaaactgaggagatgcattttatggctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="53668" stop="42457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53369" g_stop="53109" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53108" i_stop="52968" i_length="141">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="361" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="414" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="496" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="562" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="630" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="837" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46562" g_stop="46079" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="1321" r_length="484" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46078" i_stop="44024" i_length="2055">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="44023" g_stop="43772" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1322" r_stop="1573" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="43771" i_stop="43087" i_length="685">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="43086" g_stop="42750" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1574" r_stop="1910" r_length="337" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E745131" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53369" e_stop="53109"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46079"/>
          <exon e_start="44023" e_stop="43772"/>
          <exon e_start="43086" e_stop="42750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAGGTAACAGAGTATTATATATGTACATATATATTCTTTTTTGATCAAGTAAAAGTATTTTCATTCATAAACGTTACCAAAACAGCCGTATTCAATATGCCAAAAGATCAAAACTCTACAAAATATAGTACTTCGCAAATCTACCCAATCATTTTTACAACAAGGAACTTTCTGCTTACACCATAAGAAAATAAGGGAGTGGAGGCTACTCAACTGCAAGAAACTCAACTCGTGACCTACAAAAGTTCGCATATTTCTCTCTCCGAACTACCCACAGTAACCAATCGGAACCATGTTCCAGGCCCTTTGTCTTCTCCTCTTTCTCCTGCTCTTCCAACCGAGCATCAAATCTTTCACAGTTGTTGGTATTAACCAAGGAGTGTGAAACCATCTAAACACATTTCACCATATTGTCTTTCTTATTACGATCCTTATCCTTTTTGTCATTGTTTTGGGTGGCAATACATCCTCCATAGCTACCTCAAGTCAAGTGCGAGTAGGCAACTTGACAGTCTGAGTTGCTGACAGCTTGGTACATCAACGTTCCACTTTTATATGTGATAGAGACTTTTTCCTTTGGTTGACACACATTTTTAAGGATTTCTAAATGTTGGTTTGAAGCTGTCAGGAAATGCATCAGAAGATGTGGTTTTGTCCGAATAGTTTGATGTTGGCTACAAATAGTGTCATTTGCCGCCTGTAATTGCTTTAGCACATATGGGATGATTTCTATTCAATAGTCTGAGTTCATCTTGTTATAGCCTGTCTCAACTAGTCTGGAATCAAGTCTTGATTGAGTTTGAAACATAGAGGAATAATAGATGTTTTAACACTAGGAAGGAAAACATACTTAATATTAAATCTAGGTGTTTGAAAAGTCTATATTTATGGTGTAGGAAGAATATTGCATTTAGGGGTGGTAATTGGGCGGGTTGAGTCAAATTTGAGTGGGTCATAATGGGTTAAGACAACAATCGGGTGAAGACCCAACCCAACCCAAATCAAATTTGCTTGGGTCAAAATGGGTTATGTATTGGGTTATTTAACGGGTCAAGACCGGACCCAACTCAATTTTTACTGAAGGTTATTGTTTTATATGTTCTTTTAAACTATTTTAGTAATTAATAATTCTTTTTTCTTTATTATGACTATATATAACATATCAAATTGAAAAAAAAGTTCTTTATAAATATCATGACAAGATCTAACATGAGCATTAGTGTAGTCAAAGGCGCGCTTAAGCCTTGAAACGAGGCTCAAAACGTGTTGAGTGCTTTGCCTCGCTTTATGTGAGCTCTTCATCAAGGTTTATAGGCAAAATTTTCCTTGCCAATGAGCCTCTTTAAAGTGACACTAAATATTTGATATTTCATTTTATCATAGAAACTTCCAATTTTTTTGGTCATATATTTGTCATTCATGTTTATAATTATTTTCTTGGACTAAACATAGATATTTGTAATTTTTTTCTCTTTGCGCCTTTTTTCATTAAAGTTCATGCTTTATTTGCGCTTTAAAGCCCCACAAACCTTAGAGCTCTTTTGTGCCTTTTGCCTTTGATAACACTGGAGCCAATTCAGGTTACATATCAACGTAAGTTTTCATGAGTTGAGCTAATGAATGGGCAAACTTAAGCGGGTTGGGCAGGTTGGACGGGTTGGGTTTGATTTTGTCAGCCTTAATTGCATCGCATATGAACTCTTATATTAGATCTTTTGCATTCCTTCAATATTTAGAAGGAAATATTCAGTTTGTACTCTTTCTTGTACCTTCTTGGTACTCTTTAATGAAATCTATTACCTTTTTCATTAAAAAAGTATATATCAGTAACAACTAGTTTGAACTGATAAATTCCACATGCTTGCTTAGGATCTTCTCTAGAACCTTCATATGGTTTTTGTCAATTCCAGCATATGATCCATTAACCGCTATCAAACGTAGTTCCTTTTTGTTGCTTGCTGCTATTAATGACATTTACTTGTTACCTCATACTTTAGAGATCAATTAAATTACTATTATACCTTATAAATGCTTTTTTCCCTTGAAACGTGTCAACAGATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATGGTAGTTTCCTTTCCTTTCTTCTTGACCTCTGTGACAGCTTTACTGCTAGAGAATTAGAAATTAAGGATACGTTCAACAGATTGTATTACTTGCACTTTCTAAGATCAGCTTTCGAGTTGCTTGAATTTTTTTATAAGACTTGCATTAACAGGCACTTTACACCATCATGTTTTTGCTAATACAACAGCGTCGTTTCCAAACATGTAGGGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAAGTGCTTTATCTTATTATCTTTTTTGAACCCCTTGTAAATTTTGGGTTGGTCATGCTGATATATACATGTGTCATGTTAATTTGTTTTTGGTACTGTGTTGTCAATTTATTGCCTCTGACATGTAGGTCCAAACTCATCCACACCTCAAAATAATCAGAGCCTGGTAAGTAAAACTTCCACAACTAATAACAGAGGTAGAAAGCGAGCGTCATCTAGCTTTGGGAGCAACATCCACACCCTGAAACATGATGAAGATGAAAATCAGTCTGGTGACAAAAACACATTCTGGAATGGTAATTCTACTCAGTTTGGTGGAGATGAATAAGACTTTGATGTGTGTATAAATATTCTTCCCGTTAGTCATTGTAATAAGTTTTGGATTGAAGCCTGTTCCTTTACAAAAAATGATTGGCTTAAGCATAAACTGAGGAGATGCATTTTATGGTTAGAGAATATGGATGA</genome_strand>
        <mrna_strand>GATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCT.............................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAACTCATCCACACCTCAAAATAATCAGAGCCTGGTAAGTAAAACTTCCACAACTAATAACAGAGGTAGAAAGCGAGCGTCATCTAGCTTTGGGAGCAACATCCACACCCTGAAACATGATGAAGATGAAAATCAGTCTGGTGACAAAAACACATTCTGGAATGGTAATTCTACTCAGTTTGGTGGAGATGAATAAGACTTTGATGTGTGTATAAATATTCTTCCCGTTAGTCATTGTAATAAGTTTTGGATTGAAGCCTGTTCCTTTACAAAAAATGATTGGCTTAAGCACAAACTGAGGAGATGCATTTTATGGCTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373600" ref_strand="+" ref_description="SGN-E373600 [TUS-33-E20](-)">
      <seq>cagatttgggtttacacaataggcaagcactgataatcgttcttcgtaacaaagtggatgttacatcattgcatggtctaaacaatccggctgagagtaaccatacaacaattggaggcgatgcaggatattttgctacgatcagaaaactcttttcgtatgtaaatcctttatcttaccttggtggaagttctaacacatcaaacactgctcgagatagcatatggcaatatggggttggctatatgaagcattgctggctatttttctccattttgaattcatctaaggacaaacttatgcaaagtgaattgaaagcactagaagttcttttcattttctctagcgttatttgaagacaccttttccctgatttagtgcctgactttggactgtcagtgtaattgcttctccatgtgctaatatcgtacttcacactagcttttacagattaaataaagcaatgagtttgtaactgagcttttcaagatccattatcaggtgtatggaactgagtgttgttaaaaatgttctatttataaatggatgagataagggcataactcattgacagtgaggttcagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="44305" stop="42912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44005" g_stop="43772" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43771" i_stop="43565" i_length="207">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43564" g_stop="43212" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="587" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E373600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44005" e_stop="43772"/>
          <exon e_start="43564" e_stop="43212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATGGTAGTTTCCTTTCCTTTCTTCTTGACCTCTGTGACAGCTTTACTGCTAGAGAATTAGAAATTAAGGATACGTTCAACAGATTGTATTACTTGCACTTTCTAAGATCAGCTTTCGAGTTGCTTGAATTTTTTTATAAGACTTGCATTAACAGGCACTTTACACCATCATGTTTTTGCTAATACAACAGCGTCGTTTCCAAACATGTAGGGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAA</genome_strand>
        <mrna_strand>CAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG...............................................................................................................................................................................................................GGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373601" ref_strand="+" ref_description="SGN-E373601 [TUS-33-E20]">
      <seq>gaccctagtgatgaagctcctagagagattgcaaataaagcagggaaagaccccgagataaatatagttgaagatgcagctgctgagtcagatgattcgtcaaatatatttcatgatgtttgtttaaacattagattgcctgatggttcaagtttacaagtgaagtttctcgttgtagatactttaaggatggtcaagcactatgttgataaaaaccaaacaagcagcattggttattatgatctagcagttccttatcctcgcaaggtttttggtgatgaagatctagatagaacattgtcagatttgggtttacacaataggcaagcactgataatcgttcttcgtaacaaagtggatgttacatcattgcatggtctaaacaatccggctgagagtaaccatacaacaattggaggcgatgcaggatattttgctacgatcagaaaactcttttcgtatgtaaatcctttatcttaccttggtggaagttctaacacatcaaacactgctcgagatagcatatggcaatatggggttggctatatgaagcattgctggctatttttctccattttgaattcatctaaggacaaacttatgcaaagtgaattgaaagcactagaagttcttttcattttctctagcgttatttgaagacaccttttccctgatttagtgcctgactttggactgtcagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="46661" stop="43097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46361" g_stop="46079" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46078" i_stop="44024" i_length="2055">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44023" g_stop="43772" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="535" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43771" i_stop="43565" i_length="207">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43564" g_stop="43397" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="703" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E373601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46361" e_stop="46079"/>
          <exon e_start="44023" e_stop="43772"/>
          <exon e_start="43564" e_stop="43397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAGGTAACAGAGTATTATATATGTACATATATATTCTTTTTTGATCAAGTAAAAGTATTTTCATTCATAAACGTTACCAAAACAGCCGTATTCAATATGCCAAAAGATCAAAACTCTACAAAATATAGTACTTCGCAAATCTACCCAATCATTTTTACAACAAGGAACTTTCTGCTTACACCATAAGAAAATAAGGGAGTGGAGGCTACTCAACTGCAAGAAACTCAACTCGTGACCTACAAAAGTTCGCATATTTCTCTCTCCGAACTACCCACAGTAACCAATCGGAACCATGTTCCAGGCCCTTTGTCTTCTCCTCTTTCTCCTGCTCTTCCAACCGAGCATCAAATCTTTCACAGTTGTTGGTATTAACCAAGGAGTGTGAAACCATCTAAACACATTTCACCATATTGTCTTTCTTATTACGATCCTTATCCTTTTTGTCATTGTTTTGGGTGGCAATACATCCTCCATAGCTACCTCAAGTCAAGTGCGAGTAGGCAACTTGACAGTCTGAGTTGCTGACAGCTTGGTACATCAACGTTCCACTTTTATATGTGATAGAGACTTTTTCCTTTGGTTGACACACATTTTTAAGGATTTCTAAATGTTGGTTTGAAGCTGTCAGGAAATGCATCAGAAGATGTGGTTTTGTCCGAATAGTTTGATGTTGGCTACAAATAGTGTCATTTGCCGCCTGTAATTGCTTTAGCACATATGGGATGATTTCTATTCAATAGTCTGAGTTCATCTTGTTATAGCCTGTCTCAACTAGTCTGGAATCAAGTCTTGATTGAGTTTGAAACATAGAGGAATAATAGATGTTTTAACACTAGGAAGGAAAACATACTTAATATTAAATCTAGGTGTTTGAAAAGTCTATATTTATGGTGTAGGAAGAATATTGCATTTAGGGGTGGTAATTGGGCGGGTTGAGTCAAATTTGAGTGGGTCATAATGGGTTAAGACAACAATCGGGTGAAGACCCAACCCAACCCAAATCAAATTTGCTTGGGTCAAAATGGGTTATGTATTGGGTTATTTAACGGGTCAAGACCGGACCCAACTCAATTTTTACTGAAGGTTATTGTTTTATATGTTCTTTTAAACTATTTTAGTAATTAATAATTCTTTTTTCTTTATTATGACTATATATAACATATCAAATTGAAAAAAAAGTTCTTTATAAATATCATGACAAGATCTAACATGAGCATTAGTGTAGTCAAAGGCGCGCTTAAGCCTTGAAACGAGGCTCAAAACGTGTTGAGTGCTTTGCCTCGCTTTATGTGAGCTCTTCATCAAGGTTTATAGGCAAAATTTTCCTTGCCAATGAGCCTCTTTAAAGTGACACTAAATATTTGATATTTCATTTTATCATAGAAACTTCCAATTTTTTTGGTCATATATTTGTCATTCATGTTTATAATTATTTTCTTGGACTAAACATAGATATTTGTAATTTTTTTCTCTTTGCGCCTTTTTTCATTAAAGTTCATGCTTTATTTGCGCTTTAAAGCCCCACAAACCTTAGAGCTCTTTTGTGCCTTTTGCCTTTGATAACACTGGAGCCAATTCAGGTTACATATCAACGTAAGTTTTCATGAGTTGAGCTAATGAATGGGCAAACTTAAGCGGGTTGGGCAGGTTGGACGGGTTGGGTTTGATTTTGTCAGCCTTAATTGCATCGCATATGAACTCTTATATTAGATCTTTTGCATTCCTTCAATATTTAGAAGGAAATATTCAGTTTGTACTCTTTCTTGTACCTTCTTGGTACTCTTTAATGAAATCTATTACCTTTTTCATTAAAAAAGTATATATCAGTAACAACTAGTTTGAACTGATAAATTCCACATGCTTGCTTAGGATCTTCTCTAGAACCTTCATATGGTTTTTGTCAATTCCAGCATATGATCCATTAACCGCTATCAAACGTAGTTCCTTTTTGTTGCTTGCTGCTATTAATGACATTTACTTGTTACCTCATACTTTAGAGATCAATTAAATTACTATTATACCTTATAAATGCTTTTTTCCCTTGAAACGTGTCAACAGATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATGGTAGTTTCCTTTCCTTTCTTCTTGACCTCTGTGACAGCTTTACTGCTAGAGAATTAGAAATTAAGGATACGTTCAACAGATTGTATTACTTGCACTTTCTAAGATCAGCTTTCGAGTTGCTTGAATTTTTTTATAAGACTTGCATTAACAGGCACTTTACACCATCATGTTTTTGCTAATACAACAGCGTCGTTTCCAAACATGTAGGGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGT</genome_strand>
        <mrna_strand>GACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG...............................................................................................................................................................................................................GGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300676" ref_strand="+" ref_description="SGN-E300676 [cLET-45-L16]">
      <seq>gaccctagtgatgaagctcctagagagattgcacataaagcagggaaagaccccgagataaatatagttgaagatgcagctgctgagtcagatgattcgtcaaatatatttcatgatgtttgtttaaacattagattgcctgatggttcaagtttacaagtgaagtttctcgttgtagatactttaaggatggtcaagcactatgttgataaaaaccaaacaagcagcattggttattatgatctagcagttccttatcctcgcaaggtttttggtgatgaagatctagatagaacattgtcagatttgggtttacacaataggcaagcactgataatcgttcttcgtaacaaagtggatgttacatcattgcatggtctaaacaatccggctgagagtaaccatacaacaattggaggcgatgcaggatattttgctacgatcagaaaactcttttcgtatgtaaatcctttatcttaccttggtggaagttctaacacatcaaacactgctcgagatagcatatggcaatatggggctggctatatgaagcattgctggctatttttctccattttgaattcatctaaagacaaacttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="46661" stop="43196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46361" g_stop="46079" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46078" i_stop="44024" i_length="2055">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44023" g_stop="43772" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="535" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43771" i_stop="43565" i_length="207">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43564" g_stop="43496" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="604" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E300676" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46361" e_stop="46079"/>
          <exon e_start="44023" e_stop="43772"/>
          <exon e_start="43564" e_stop="43496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAGGTAACAGAGTATTATATATGTACATATATATTCTTTTTTGATCAAGTAAAAGTATTTTCATTCATAAACGTTACCAAAACAGCCGTATTCAATATGCCAAAAGATCAAAACTCTACAAAATATAGTACTTCGCAAATCTACCCAATCATTTTTACAACAAGGAACTTTCTGCTTACACCATAAGAAAATAAGGGAGTGGAGGCTACTCAACTGCAAGAAACTCAACTCGTGACCTACAAAAGTTCGCATATTTCTCTCTCCGAACTACCCACAGTAACCAATCGGAACCATGTTCCAGGCCCTTTGTCTTCTCCTCTTTCTCCTGCTCTTCCAACCGAGCATCAAATCTTTCACAGTTGTTGGTATTAACCAAGGAGTGTGAAACCATCTAAACACATTTCACCATATTGTCTTTCTTATTACGATCCTTATCCTTTTTGTCATTGTTTTGGGTGGCAATACATCCTCCATAGCTACCTCAAGTCAAGTGCGAGTAGGCAACTTGACAGTCTGAGTTGCTGACAGCTTGGTACATCAACGTTCCACTTTTATATGTGATAGAGACTTTTTCCTTTGGTTGACACACATTTTTAAGGATTTCTAAATGTTGGTTTGAAGCTGTCAGGAAATGCATCAGAAGATGTGGTTTTGTCCGAATAGTTTGATGTTGGCTACAAATAGTGTCATTTGCCGCCTGTAATTGCTTTAGCACATATGGGATGATTTCTATTCAATAGTCTGAGTTCATCTTGTTATAGCCTGTCTCAACTAGTCTGGAATCAAGTCTTGATTGAGTTTGAAACATAGAGGAATAATAGATGTTTTAACACTAGGAAGGAAAACATACTTAATATTAAATCTAGGTGTTTGAAAAGTCTATATTTATGGTGTAGGAAGAATATTGCATTTAGGGGTGGTAATTGGGCGGGTTGAGTCAAATTTGAGTGGGTCATAATGGGTTAAGACAACAATCGGGTGAAGACCCAACCCAACCCAAATCAAATTTGCTTGGGTCAAAATGGGTTATGTATTGGGTTATTTAACGGGTCAAGACCGGACCCAACTCAATTTTTACTGAAGGTTATTGTTTTATATGTTCTTTTAAACTATTTTAGTAATTAATAATTCTTTTTTCTTTATTATGACTATATATAACATATCAAATTGAAAAAAAAGTTCTTTATAAATATCATGACAAGATCTAACATGAGCATTAGTGTAGTCAAAGGCGCGCTTAAGCCTTGAAACGAGGCTCAAAACGTGTTGAGTGCTTTGCCTCGCTTTATGTGAGCTCTTCATCAAGGTTTATAGGCAAAATTTTCCTTGCCAATGAGCCTCTTTAAAGTGACACTAAATATTTGATATTTCATTTTATCATAGAAACTTCCAATTTTTTTGGTCATATATTTGTCATTCATGTTTATAATTATTTTCTTGGACTAAACATAGATATTTGTAATTTTTTTCTCTTTGCGCCTTTTTTCATTAAAGTTCATGCTTTATTTGCGCTTTAAAGCCCCACAAACCTTAGAGCTCTTTTGTGCCTTTTGCCTTTGATAACACTGGAGCCAATTCAGGTTACATATCAACGTAAGTTTTCATGAGTTGAGCTAATGAATGGGCAAACTTAAGCGGGTTGGGCAGGTTGGACGGGTTGGGTTTGATTTTGTCAGCCTTAATTGCATCGCATATGAACTCTTATATTAGATCTTTTGCATTCCTTCAATATTTAGAAGGAAATATTCAGTTTGTACTCTTTCTTGTACCTTCTTGGTACTCTTTAATGAAATCTATTACCTTTTTCATTAAAAAAGTATATATCAGTAACAACTAGTTTGAACTGATAAATTCCACATGCTTGCTTAGGATCTTCTCTAGAACCTTCATATGGTTTTTGTCAATTCCAGCATATGATCCATTAACCGCTATCAAACGTAGTTCCTTTTTGTTGCTTGCTGCTATTAATGACATTTACTTGTTACCTCATACTTTAGAGATCAATTAAATTACTATTATACCTTATAAATGCTTTTTTCCCTTGAAACGTGTCAACAGATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATGGTAGTTTCCTTTCCTTTCTTCTTGACCTCTGTGACAGCTTTACTGCTAGAGAATTAGAAATTAAGGATACGTTCAACAGATTGTATTACTTGCACTTTCTAAGATCAGCTTTCGAGTTGCTTGAATTTTTTTATAAGACTTGCATTAACAGGCACTTTACACCATCATGTTTTTGCTAATACAACAGCGTCGTTTCCAAACATGTAGGGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGC</genome_strand>
        <mrna_strand>GACCCTAGTGATGAAGCTCCTAGAGAGATTGCACATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG...............................................................................................................................................................................................................GGGCTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAAGACAAACTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263514" ref_strand="+" ref_description="SGN-E263514 [cLEG-60-K23]">
      <seq>cacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactactttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacagctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatcttgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacatttggaccctagtgatgaagctcctagagagattgcaaataaagcagggaaagaccccgagataaatatagttgaagatgcagctgctgagtcagatgattcgtncaatatatttcatgatgtttgtttaaacattagattgcctgatggttcaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="50201" stop="45908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49901" g_stop="49839" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="131" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="338" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46562" g_stop="46208" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="693" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E263514" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49901" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTT</genome_strand>
        <mrna_strand>CACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTNCAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273322" ref_strand="+" ref_description="SGN-E273322 [cLEN-3-E14]">
      <seq>tgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatcttgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacatttggaccctagtgatgaagctcctagagagattgcaaataaagcagggaaagaccccgagataaatatagttgaagatgcagctgctgagtcagatgattcgtcaaatatatttcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="47069" stop="45945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46769" g_stop="46640" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46562" g_stop="46245" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="448" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E273322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46769" e_stop="46640"/>
          <exon e_start="46562" e_stop="46245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGAT</genome_strand>
        <mrna_strand>TGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740364" ref_strand="+" ref_description="SGN-E740364 [LC21AE08]">
      <seq>agctttcattttagagttttggctcaaaattccgattgatcggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactgctttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacatctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatattgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacatttggaccctagtgatgaagctcctagagagattgcaaataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54523" stop="46022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54223" g_stop="54161" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="163" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="216" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="298" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="364" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="432" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="639" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46562" g_stop="46322" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="880" r_length="241" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E740364" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54223" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAG</genome_strand>
        <mrna_strand>AGCTTTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTGCTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACATCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATATTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702107" ref_strand="+" ref_description="SGN-E702107 [FA17DC10]">
      <seq>aggagttcagtagttagtgtgatctacaatggtagtgttctcgaagccatttaaaactttgtgaattctttcttggttgatgagtcttataattcggaaatcttgctgtcaatgccatgctgtctatgtgcacttttcatgtagatatacccttacatgagctacatagatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacggtatggatcagcttaatctaatgtttggtaataaaaaacatggcatgattagttgtttgagacgtaactgagttgttgcatctctttcttatctcttaattatgtatctaattttagggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactgctttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacatctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatattgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacatttggaccctagtgatgaagctcctaaagagattgcaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="50373" stop="46023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50073" g_stop="49654" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="627" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46562" g_stop="46323" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="867" r_length="240" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E702107" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50073" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAA</genome_strand>
        <mrna_strand>AGGAGTTCAGTAGTTAGTGTGATCTACAATGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTGCTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACATCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATATTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAAAGAGATTGCAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700753" ref_strand="+" ref_description="SGN-E700753 [FA14AC08]">
      <seq>ggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacggtatggatcagcttaatctaatgtttgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactgctttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacatctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatattgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacatttggaccctagtgatgaagctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54482" stop="46041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54182" g_stop="54161" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="122" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="175" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="257" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49812" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="350" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49811" i_stop="49722" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="418" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="625" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46562" g_stop="46341" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="847" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E700753" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54182" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49812"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCT</genome_strand>
        <mrna_strand>GGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTG..........................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTGCTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACATCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATATTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736539" ref_strand="+" ref_description="SGN-E736539 [LC06AF06]">
      <seq>agcattcattttagagttttggctcaaaattccgattgatcggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactgctttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacatctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatattgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacatttggaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54523" stop="46056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54223" g_stop="54161" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="163" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="216" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="298" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="364" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="432" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="639" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46562" g_stop="46356" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="846" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E736539" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54223" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCT</genome_strand>
        <mrna_strand>AGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTGCTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACATCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATATTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246175" ref_strand="+" ref_description="SGN-E246175 [cLEF-40-L7]">
      <seq>gttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactactttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacagctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatcttgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="50175" stop="46063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49875" g_stop="49839" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="105" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="312" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46562" g_stop="46363" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="512" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E246175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49875" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTT</genome_strand>
        <mrna_strand>GTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259982" ref_strand="+" ref_description="SGN-E259982 [cLEG-51-P7]">
      <seq>cacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactactttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacagctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="50201" stop="46138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49901" g_stop="49839" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="131" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="338" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46562" g_stop="46438" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="463" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E259982" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49901" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGT</genome_strand>
        <mrna_strand>CACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483302" ref_strand="+" ref_description="SGN-E483302 [cSTE-8-F24]">
      <seq>gataaactcaaaattacgattgatcgaagtggacatctctccggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctattgtagaagccatcactgaagccaagcagcagaagaagctttttgtagtttttgtttcaggtggcaatatggaatcaaaccaatcggaaacatcaacttggctcgacccaagagttgctgattctatatcaaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacagaaggctgtcccttgtattacagttattggatacaatggtgttcaactatggcaacatgggggttttgtttctgctgataatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacagctactttcttgactgctgcacttgcttcaaagaaagagcttgtatctggagcttcttctgtaacatctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgatgacacatatacaatctccattgactacactgtctaaaaactctcagatagtagagggagaggatcgtggacatgctgctacngaaatagattcctcgctgattgacatggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="53267" stop="46231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="156" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="209" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="291" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="357" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="425" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="632" r_length="207" r_score="0.947"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46562" g_stop="46531" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="664" r_length="32" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E483302" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E483302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTC</genome_strand>
        <mrna_strand>ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTATTGTAGAAGCCATCACTGAAGCCAAGCAGCAGAAGAAGCTTTTTGTAGTTTTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAACCAATCGGAAACATCAACTTGGCTCGACCCAAGA..................................................................................................GTTGCTGATTCTATATCAAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGAAGGCTGTCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACATG.....................................................................................................................GGGGTTTTGTTTCTGCTGATAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAGCTACTTTCTTGACTGCTGCACTTGCTTCAAAGAAAGAGCTTGTATCTGGAGCTTCTTCTGTAACATCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATGACACATATACAATCTCCATTGACTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCGTGGACATGCTGCTACN.............................................................................GAAATAGATTCCTCGCTGATTGACATGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324504" ref_strand="+" ref_description="SGN-E324504 [cTOC-9-G19]">
      <seq>cgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaagtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactactttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacagctgaagtagggagttcttcaagtgctcaagtttcaccagctcaagcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagaaggagaagatcctggacatgctgctatggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="53267" stop="46334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="112" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="165" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="247" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="313" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="381" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="588" r_length="207" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46562" g_stop="46558" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="593" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E324504" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACAT</genome_strand>
        <mrna_strand>ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAAGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAAGGAGAAGATCCTGGACATGCTGCTATG.............................................................................GACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370951" ref_strand="+" ref_description="SGN-E370951 [TUS-27-N21]">
      <seq>aaagcattcattttagagttttggctcaaaattccgattgatcggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactactttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacagctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54525" stop="46346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54225" g_stop="54161" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="165" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="218" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="300" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="366" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="434" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46846" g_stop="46646" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="635" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E370951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54225" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCT</genome_strand>
        <mrna_strand>AAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418446" ref_strand="+" ref_description="SGN-E418446 [STM-27-F9]">
      <seq>cgataaactcaaaattacgattgatcgaagtggacatctctccggcgcaatcaagctgcttgtgtctgtttgaactatggattactctatggagcaacttttatctcctctcgtgttcaatggttctattgtagaagccatcactgaagccaagcagcagaagaagctttttgtagtttttgtttcaggtggcaatatggaatcaaaccaatcggaaacatcaacttggctcgacccaagagttgctgattctatatcaaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacagaaggctgtcccttgtattacagttattggatacaatggtgttcaactatggcaacatgggggttttgtttctgctgataatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacagctactttcttgactgctgcacttgcttcaaagaaagagcttgtatctggagcttcttctgtaacatctgaagtanggagttcttcaagtgctcaagtttcaccagctcaggcgatgacacatatacaatctccattgactacactgtctaaaaactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="53439" stop="46378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53139" g_stop="53109" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="88" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53108" i_stop="52968" i_length="141">
            <donor d_prob="0.837" d_score="0.00"/>
            <acceptor a_prob="0.086" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="188" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="241" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="323" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="389" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="457" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46846" g_stop="46678" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="626" r_length="169" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E418446" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53139" e_stop="53109"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTC</genome_strand>
        <mrna_strand>GCTTGTGTCTGTTTGAACTATGGATTACTCT.............................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTATTGTAGAAGCCATCACTGAAGCCAAGCAGCAGAAGAAGCTTTTTGTAGTTTTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAACCAATCGGAAACATCAACTTGGCTCGACCCAAGA..................................................................................................GTTGCTGATTCTATATCAAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGAAGGCTGTCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACATG.....................................................................................................................GGGGTTTTGTTTCTGCTGATAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAGCTACTTTCTTGACTGCTGCACTTGCTTCAAAGAAAGAGCTTGTATCTGGAGCTTCTTCTGTAACATCTGAAGTANGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATGACACATATACAATCTCCATTGACTACACTGTCTAAAAACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272744" ref_strand="+" ref_description="SGN-E272744 [cLEM-21-H13]">
      <seq>cgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactactttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="53267" stop="46481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="112" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="165" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="247" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="313" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="381" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46846" g_stop="46781" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="447" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E272744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCT</genome_strand>
        <mrna_strand>ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301459" ref_strand="+" ref_description="SGN-E301459 [cLEX-8-E14]">
      <seq>ttttcggtaaaaaaaccgtttccacccttgtttgaaaagcattcattttagagttttggctcaaaattccgattgatcggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54559" stop="49383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54259" g_stop="54161" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="200" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="253" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="335" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="401" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49683" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="440" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E301459" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54259" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGGT-AAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTG</genome_strand>
        <mrna_strand>TTTTCGGTAAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697427" ref_strand="+" ref_description="SGN-E697427 [FA02DE11]">
      <seq>aactcaaaagtgtcttttcgttttaccggcttttcgccaaaaaaccgtttccacccttgtttgaaaagcattcattttagagttttggctcaaaattccgattgatcggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgcccgaaacttctcagcattgtatccacaggaggctatcccttgtattacagctattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54587" stop="49394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54287" g_stop="54161" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="229" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="282" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="364" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="430" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49694" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="458" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E697427" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54287" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCAAAAGTGT-TTTTCGTTTTACCGG-TTTTCGGTAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGC</genome_strand>
        <mrna_strand>AACTCAAAAGTGTCTTTTCGTTTTACCGGCTTTTCGCCAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCCGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGCTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279213" ref_strand="-" ref_description="SGN-E279213 [cLEL-4-C3](-)">
      <seq>gaaactcaaaagtgtttttcgttttaccggttttcggtaaaaaaccgtttccacccttgtttgaaaagcattcattcctagagttttggctcaaaattccgattgatcggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54589" stop="49538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54289" g_stop="54161" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="230" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="283" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="365" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="431" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49706" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="447" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E279213" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279213" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54289" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTCAAAAGTGTTTTTCGTTTTACCGGTTTTCGGTAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATT-TTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGC</genome_strand>
        <mrna_strand>GAAACTCAAAAGTGTTTTTCGTTTTACCGGTTTTCGGTAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTCCTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327614" ref_strand="+" ref_description="SGN-E327614 [cTOC-20-H17]">
      <seq>aaaaaccgtttccacccttgtttgaaaagcattcattttagagttttggctcaaaattccgattgatcggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtgtatcctttgcctgtataaagtttctccccccctcccccttgagatactctattcctcgtctaatttcttttgtttctttacacatccctctatcagtgcagggagttttgttttctttgtctattaattgcgcgtattctgagagggtgagggatctttctcttctgaatcaccatgagcttggagctcatgctagatatcataaacaaggaattctaggacctgatttatggaaattttctagctgaaattttgtaaatggagttggttaaagaaacttcaagcagaggtgacgcttagatgtgttatacaaaaaattcatctaaatggaagcgaaataaactatattttggggcaagtgtagactttataaacagatacattggntgcangggtctccctctgtctaacagaagaaattcatcatcctgctggcaactttccagggtaacccgggtcatgtcatactgactggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54550" stop="51426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54250" g_stop="54161" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="190" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="243" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="51726" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="805" r_length="562" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E327614" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54250" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="51726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTT</genome_strand>
        <mrna_strand>AAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAAT-AAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACATTGGNTGCANGGGTCTCCCTCTGTCTAACAGAAGAA-ATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCCGGGTCATGTC-ATACTGACTGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296413" ref_strand="+" ref_description="SGN-E296413 [cLET-19-J22]">
      <seq>tgtttttcgttttaccggttttctgtaaaaaaccgtttccacccttgtttgaaaagcattcattttagagttttggctcaaaattccgattgatcggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54577" stop="51968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54277" g_stop="54161" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="217" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="270" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52268" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="293" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E296413" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54277" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTCGTTTTACCGGTTTTCGGTAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTA</genome_strand>
        <mrna_strand>TGTTTTTCGTTTTACCGGTTTTCTGTAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264238" ref_strand="+" ref_description="SGN-E264238 [cLEG-70-O24]">
      <seq>taatctctaccgtccattcacacatcacaaacaatctccaccgtaagctcatatttattgaaaaagatactccatctaactcttgcttcttttgtaccaaagaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55404" stop="56535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55704" g_stop="56235" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E264238" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55704" e_stop="56235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAAC</genome_strand>
        <mrna_strand>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263127" ref_strand="+" ref_description="SGN-E263127 [cLEG-62-E5]">
      <seq>taatctctaccgtccattcacacatcacaaacaatctccaccgtaagctcatatttattgaaaaagatactccatctaactcttgcttcttttgtaccaaagaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgatttttgtttctgtttggaaatcatttggggggttttgttcatgggagatgagaatgagtctttcaggaagcaaccccacactagtgaagacggtgaaaggtaccaagatgtgtgtgaaagattgggagtgcaacaaattgtctaaattttgttgtaatttgacaatttactgattatctggatgttgaccaatttgagctccttttcactaagaagaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtagaaaatgcagatgaaggagattgctgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55404" stop="56513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55704" g_stop="56213" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E263127" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55704" e_stop="56213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGA-TTTTGTTTCTG-TTGGTAATCA-TT-GGGGGTTTTGTTCAT-GGAGATGAGAATGAGTCATTCAGGAAGCAA-CCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAA-TTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTT</genome_strand>
        <mrna_strand>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTTGTTTCTGTTTGGAAATCATTTGGGGGGTTTTGTTCATGGGAGATGAGAATGAGTCTTTCAGGAAGCAACCCCACACTAGTGAAGACGGTGAAAGGTACCAAGATGTGTGTGAAAGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAAGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGT-AGAAAATGCAGATGAAGGAGATTGCTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256266" ref_strand="+" ref_description="SGN-E256266 [cLEG-37-P23]">
      <seq>taatctctaccgtccattcacacatcacaaacaatctccaccgtaagctcatatttattgaaaaagatactccatctaactcttgcttcttttgtaccaaagaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaagaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55404" stop="56466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55704" g_stop="56166" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E256266" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55704" e_stop="56166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGG</genome_strand>
        <mrna_strand>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAAGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264099" ref_strand="+" ref_description="SGN-E264099 [cLEG-64-E6]">
      <seq>taatctctaccgtccattcacacatcacaaacaatctccaccgtaagctcatatttattgaaaaagatactccatctaactcttgcttcttttgtaccaaagaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55404" stop="56181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55704" g_stop="55881" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E264099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55704" e_stop="55881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCT</genome_strand>
        <mrna_strand>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722344" ref_strand="+" ref_description="SGN-E722344 [FC17AA01]">
      <seq>aatcggccgaattggtaccaaagaaaattcactctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55494" stop="57108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55782" g_stop="56240" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="618" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56808" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="874" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E722344" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55782" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGC</genome_strand>
        <mrna_strand>AATC-GGCCGAATTGGTACCAAAGAAAATTCACTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720519" ref_strand="+" ref_description="SGN-E720519 [FC11AC02]">
      <seq>gttgcttcttttgtaccaaagaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtgcccaaggtgatgttgacccaatgaacaacatcgtctcccatttactctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55486" stop="57156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55785" g_stop="56240" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="616" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56856" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="920" r_length="304" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E720519" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55785" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTAC</genome_strand>
        <mrna_strand>GTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGCCCAAGGTGATGTTGACCCAATGAACAACATCGTCTCCCATTTACTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724934" ref_strand="+" ref_description="SGN-E724934 [FC25CD01]">
      <seq>cttcttttgtaccaaagaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55489" stop="56965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55789" g_stop="56240" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="612" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56665" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="725" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E724934" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55789" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGA</genome_strand>
        <mrna_strand>CTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701780" ref_strand="+" ref_description="SGN-E701780 [FA16DG02]">
      <seq>taccaatgaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggcccangtgatgttgacgccatgaaacacatcgtctcccattactctactaccttgacttgatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55498" stop="57175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55798" g_stop="56240" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="603" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56875" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="925" r_length="322" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E701780" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>926</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55798" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGG</genome_strand>
        <mrna_strand>TACCAATGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCCANGTGATGTTGACGCCATGAAACACATCGTCTCCCATTA-CTCTACTACCTTGACTTGATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698595" ref_strand="+" ref_description="SGN-E698595 [FA06DH06]">
      <seq>ccccttaaaattcattctctcttctattctattcactttctacccataaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcctggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttccctaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttactagcctcttggatttggcaccaccggtggtaagaaaatgcagatgaaggacattgctgctttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55506" stop="56516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55800" g_stop="56216" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E698595" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55800" e_stop="56216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTG</genome_strand>
        <mrna_strand>CCCCTTAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACCCATAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCCTGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCCCTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACTAGCCTCTTGGATTTGGCACCACCGGTGGTAAGAAAATGCAGATGAAGGACATTGCTGCTTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723511" ref_strand="+" ref_description="SGN-E723511 [FC20CH11]">
      <seq>aatcggccgaattgcttttgtacaaagaccattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55490" stop="56942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55801" g_stop="56240" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="462" r_length="440" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="622" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56642" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="712" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E723511" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55801" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTT</genome_strand>
        <mrna_strand>CAAAGACCATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702336" ref_strand="+" ref_description="SGN-E702336 [FA18BG07]">
      <seq>aagaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55503" stop="57170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55803" g_stop="56240" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="598" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56870" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="916" r_length="318" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E702336" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>916</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55803" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGAT</genome_strand>
        <mrna_strand>AAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710239" ref_strand="+" ref_description="SGN-E710239 [FA54DA08]">
      <seq>cagaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagcccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctctcccaggctgccatttggaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55504" stop="56962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55803" g_stop="56240" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="598" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56662" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="710" r_length="112" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E710239" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55803" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCC-TCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCT-TTCCAGGCTGCCATTTGGAGGT</genome_strand>
        <mrna_strand>CAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTCTCCCAGGCTGCCATTTGGAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340086" ref_strand="+" ref_description="SGN-E340086 [cTOF-3-N7]">
      <seq>aagaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattaccggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55503" stop="56951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55803" g_stop="56240" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="599" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56651" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="698" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E340086" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55803" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTA-CGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGC</genome_strand>
        <mrna_strand>AAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACCGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728490" ref_strand="+" ref_description="SGN-E728490 [LA18AA04]">
      <seq>agaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggcccaagtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55504" stop="57175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55804" g_stop="56240" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="597" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56875" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="920" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E728490" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55804" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGG</genome_strand>
        <mrna_strand>AGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCCAAGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697840" ref_strand="+" ref_description="SGN-E697840 [FA04BG10]">
      <seq>ccattattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacgaaatgctaccatggctttccaagctgccatttggaggtggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55509" stop="56967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55804" g_stop="56240" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="597" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56667" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="712" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E697840" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55804" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATG</genome_strand>
        <mrna_strand>CCATTATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACGAAATGCTACCATGGCTTTCCAAGCTGCCATTTGGAGGTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704378" ref_strand="+" ref_description="SGN-E704378 [FA24AE05]">
      <seq>gaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccacatgaatattctctatggtgatggtgtttgtgggccaggtgatgttgacgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55505" stop="57129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55805" g_stop="56240" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="596" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56829" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="872" r_length="276" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E704378" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55805" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATG</genome_strand>
        <mrna_strand>GAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCA-CATGAATATTCTCTATGGTGATGGTGTTTGTGGGCCAGGTGATGTTGACGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710558" ref_strand="+" ref_description="SGN-E710558 [FA55DB10]">
      <seq>caaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggccgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgaattcctggtttcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55506" stop="57068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55805" g_stop="56240" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="596" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56768" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="812" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E710558" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55805" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGG</genome_strand>
        <mrna_strand>CAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCCGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAATTCCTGGTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729676" ref_strand="+" ref_description="SGN-E729676 [LA21DB01]">
      <seq>aaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaaaaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55506" stop="57087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55806" g_stop="56240" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="595" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56787" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="830" r_length="235" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E729676" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55806" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTC</genome_strand>
        <mrna_strand>AAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAAAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310251" ref_strand="+" ref_description="SGN-E310251 [cTOA-1-K11]">
      <seq>aaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55506" stop="56872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55806" g_stop="56240" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="595" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56572" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="615" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E310251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55806" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTA</genome_strand>
        <mrna_strand>AAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703909" ref_strand="+" ref_description="SGN-E703909 [FA22DC07]">
      <seq>attcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctnaacgagttcctggtttcgggtacaccatgaatattctctatggtgatggtgttttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55509" stop="57152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55809" g_stop="56240" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="592" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56852" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="893" r_length="301" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E703909" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55809" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTG-TTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCT</genome_strand>
        <mrna_strand>ATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTNAACGAGTTCCTGGTTTCGGGTACACCATGAATATTCTCTATGGTGATGGTGTTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706996" ref_strand="+" ref_description="SGN-E706996 [FA31DB02]">
      <seq>attcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaaaaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55509" stop="57103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55809" g_stop="56240" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="592" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56803" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="843" r_length="251" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E706996" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55809" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTT</genome_strand>
        <mrna_strand>ATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAAAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291201" ref_strand="+" ref_description="SGN-E291201 [cLET-2-I11]">
      <seq>attcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55509" stop="56743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55809" g_stop="56240" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56443" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="555" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E291201" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55809" e_stop="56240"/>
          <exon e_start="56321" e_stop="56443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAG</genome_strand>
        <mrna_strand>ATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315021" ref_strand="+" ref_description="SGN-E315021 [cTOB-4-G4]">
      <seq>ttcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55510" stop="56743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55810" g_stop="56240" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56443" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="554" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E315021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55810" e_stop="56240"/>
          <exon e_start="56321" e_stop="56443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAG</genome_strand>
        <mrna_strand>TTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292721" ref_strand="+" ref_description="SGN-E292721 [cLET-11-J3]">
      <seq>cattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55512" stop="56654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55812" g_stop="56240" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56354" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="463" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E292721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55812" e_stop="56240"/>
          <exon e_start="56321" e_stop="56354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGC</genome_strand>
        <mrna_strand>CATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700021" ref_strand="+" ref_description="SGN-E700021 [FA11DE11]">
      <seq>actctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaaaccaatgaagaagggtcagccttcacctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55513" stop="57052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55813" g_stop="56240" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="588" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56752" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="788" r_length="200" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E700021" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55813" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAAC</genome_strand>
        <mrna_strand>ACTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAAACCAATGAAGAAGGGTCAGCCTTCACCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707880" ref_strand="+" ref_description="SGN-E707880 [FA34AH10]">
      <seq>cttttctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55514" stop="57046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55813" g_stop="56240" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="588" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56746" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="782" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E707880" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55813" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGT</genome_strand>
        <mrna_strand>CTTTTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269537" ref_strand="+" ref_description="SGN-E269537 [cLEM-2-I13]">
      <seq>ttctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55514" stop="56732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55814" g_stop="56240" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56432" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="539" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E269537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55814" e_stop="56240"/>
          <exon e_start="56321" e_stop="56432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATG</genome_strand>
        <mrna_strand>TTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710623" ref_strand="+" ref_description="SGN-E710623 [FA56AA02]">
      <seq>tctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55515" stop="56919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55815" g_stop="56240" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="586" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56619" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="653" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E710623" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55815" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATT</genome_strand>
        <mrna_strand>TCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728560" ref_strand="+" ref_description="SGN-E728560 [LA18AH04]">
      <seq>ctttttattccctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccatccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaaacccacaaagaatgatactttgtctaaacgagttcctggtttcggtacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55516" stop="57073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55816" g_stop="56240" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="436" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="596" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56773" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="817" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E728560" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55816" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCA</genome_strand>
        <mrna_strand>CTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCATCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAACCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707799" ref_strand="+" ref_description="SGN-E707799 [FA34AA08]">
      <seq>ctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaangtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55518" stop="57169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55818" g_stop="56240" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="583" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56869" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="900" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E707799" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55818" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGA</genome_strand>
        <mrna_strand>CTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAANGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702261" ref_strand="+" ref_description="SGN-E702261 [FA18AH12]">
      <seq>cttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgattgttgacgcatgaacaacatcgtctcccattacctctactaccttgacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55520" stop="57168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55820" g_stop="56240" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="581" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56868" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="897" r_length="316" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E702261" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55820" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGA-TGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTG</genome_strand>
        <mrna_strand>CTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATTGTTGACGC-ATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699856" ref_strand="+" ref_description="SGN-E699856 [FA11BF05]">
      <seq>cttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaaaaatgatactttgtctaaacaagttcctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55520" stop="57063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55820" g_stop="56240" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="581" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56763" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="792" r_length="211" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E699856" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55820" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGT</genome_strand>
        <mrna_strand>CTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAAAATGATACTTTGTCTAAACAAGTTCCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705274" ref_strand="+" ref_description="SGN-E705274 [FA26CF04]">
      <seq>ctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgcttttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggcccaagtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55523" stop="57164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55823" g_stop="56240" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="579" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56864" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="891" r_length="312" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E705274" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55823" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGC-TTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGA</genome_strand>
        <mrna_strand>CTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCCAAGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700798" ref_strand="+" ref_description="SGN-E700798 [FA14AG08]">
      <seq>ctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatctgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaaaggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55523" stop="57117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55823" g_stop="56240" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="578" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56817" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="843" r_length="265" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E700798" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55823" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGAT</genome_strand>
        <mrna_strand>CTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATCTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAAGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236120" ref_strand="+" ref_description="SGN-E236120 [cLED-16-G14]">
      <seq>ttctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55526" stop="56454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55826" g_stop="56154" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E236120" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55826" e_stop="56154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCC</genome_strand>
        <mrna_strand>TTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703817" ref_strand="+" ref_description="SGN-E703817 [FA22CB12]">
      <seq>ccgttttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaactaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtaactcatgctgtcggattctgggattatggatctttcattagggctgcagtactttaccagcctcttggatttggtaccaccggtggcaaaataatgcacatgaaggagattgctgctttttttggacatgtcagtagcaaaacttcttgtggttatggtgtcgccactggacggaacactctcttatggtctatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55536" stop="56668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55832" g_stop="56240" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56368" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="458" r_length="49" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E703817" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55832" e_stop="56240"/>
          <exon e_start="56321" e_stop="56368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGG-CGGACCACTCGCTTATGGTCTATGCT</genome_strand>
        <mrna_strand>CCGTTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACTAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAACTCATGCTGTCGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGTACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGCAAAATAATGCACATGAAGGAGATTGCTGCTTTTTTTGGACATGTCAGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGACGGAACACTCTCTTATGGTCTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701099" ref_strand="+" ref_description="SGN-E701099 [FA15AB03]">
      <seq>ctttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgtttgacgcatgaacaacatcgtctcccattacctctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55535" stop="57157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55835" g_stop="56240" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="566" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56857" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="871" r_length="305" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E701099" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55835" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATG-TTGACGCAATGAACAACATCGTCTCCCATTACCTCTACT</genome_strand>
        <mrna_strand>CTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTTGACGC-ATGAACAACATCGTCTCCCATTACCTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281880" ref_strand="+" ref_description="SGN-E281880 [cLES-2-B17]">
      <seq>tctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55538" stop="56542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55838" g_stop="56240" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56333" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="416" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E281880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55838" e_stop="56240"/>
          <exon e_start="56321" e_stop="56333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGT</genome_strand>
        <mrna_strand>TCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707133" ref_strand="+" ref_description="SGN-E707133 [FA32AF05]">
      <seq>cagtaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttngacgcatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55545" stop="57180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55844" g_stop="56240" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="557" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56880" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="885" r_length="328" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E707133" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55844" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTT-GACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGT</genome_strand>
        <mrna_strand>CAGTAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTNGACGC-ATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707082" ref_strand="+" ref_description="SGN-E707082 [FA32AA10]">
      <seq>aagtaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatggggggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55544" stop="57178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55844" g_stop="56240" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="557" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56879" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="884" r_length="327" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E707082" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55844" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGG</genome_strand>
        <mrna_strand>AAGTAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703109" ref_strand="+" ref_description="SGN-E703109 [FA20CD01]">
      <seq>agaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55545" stop="57184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55845" g_stop="56240" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="556" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56884" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="888" r_length="332" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E703109" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55845" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCG</genome_strand>
        <mrna_strand>AGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702566" ref_strand="+" ref_description="SGN-E702566 [FA19AD03]">
      <seq>agaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactactttgacttgatgggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55545" stop="57177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55845" g_stop="56240" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="556" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56877" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="881" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E702566" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55845" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTT</genome_strand>
        <mrna_strand>AGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACTTTGACTTGATGGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701336" ref_strand="+" ref_description="SGN-E701336 [FA15CG04]">
      <seq>agaatatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55545" stop="57174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55845" g_stop="56240" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="556" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56874" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="878" r_length="322" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E701336" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55845" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGG</genome_strand>
        <mrna_strand>AGAATATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705808" ref_strand="+" ref_description="SGN-E705808 [FA28AG10]">
      <seq>agaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55545" stop="57170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55845" g_stop="56240" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="554" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56870" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="872" r_length="318" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E705808" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55845" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGAT</genome_strand>
        <mrna_strand>AGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGA--TGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699564" ref_strand="+" ref_description="SGN-E699564 [FA10CB06]">
      <seq>gaaaatgaagatgcggtatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55546" stop="57120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55846" g_stop="56240" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="556" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56820" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="824" r_length="268" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E699564" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55846" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGAAGATGAGG-ATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTT</genome_strand>
        <mrna_strand>GAAAATGAAGATGCGGTATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269978" ref_strand="+" ref_description="SGN-E269978 [cLEM-7-L1]">
      <seq>gaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagccccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55546" stop="56788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55846" g_stop="56240" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="555" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56559" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="562" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E269978" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55846" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTAC</genome_strand>
        <mrna_strand>GAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGCCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697890" ref_strand="+" ref_description="SGN-E697890 [FA04CD10]">
      <seq>ccctttgaagatgaggatgattatgattttgtttctgttggtaactcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacacattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttccctaagaggaactcacccgtagcttcatgctgttggattctgggattatggatctttctttagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaacatgcccatgaaggacattgctgcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55551" stop="56515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55846" g_stop="56215" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E697890" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55846" e_stop="56215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAA-TCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGC-TCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTT</genome_strand>
        <mrna_strand>CCCTTTGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAACTCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACACATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCCCTAAGAGGAACTCACCCGTAGCTTCATGCTGTTGGATTCTGGGATTATGGATCTTTCTTTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAACATGCCCATGAAGGACATTGCTGCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283186" ref_strand="+" ref_description="SGN-E283186 [cLER-17-J13]">
      <seq>aaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55547" stop="56743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55847" g_stop="56240" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56443" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="517" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E283186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55847" e_stop="56240"/>
          <exon e_start="56321" e_stop="56443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAG</genome_strand>
        <mrna_strand>AAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707769" ref_strand="+" ref_description="SGN-E707769 [FA33DG01]">
      <seq>cattaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgtttgacgcatgaaacacatcgtctcccattacctctactaccttgacttgatgggggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55550" stop="57177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55849" g_stop="56240" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="552" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56877" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="877" r_length="325" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E707769" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55849" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATG-TTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTT</genome_strand>
        <mrna_strand>CATTAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTTGACGC-ATGAAACACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553882" ref_strand="+" ref_description="SGN-E553882 [cTSC-2-I19]">
      <seq>tgaagatgaggatgattatgattttgtttctgttggtaatcattggggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaaacacatcgtctcccattacctctactaccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55551" stop="57164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55851" g_stop="56240" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="551" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56864" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="863" r_length="312" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E553882" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55851" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATT-GGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGA</genome_strand>
        <mrna_strand>TGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAAACACATCGTCTCCCATTACCTCTACTACCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249913" ref_strand="+" ref_description="SGN-E249913 [cLEF-57-L6]">
      <seq>gaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55552" stop="56930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55852" g_stop="56240" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="549" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56630" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="627" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E249913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55852" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGC</genome_strand>
        <mrna_strand>GAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700588" ref_strand="+" ref_description="SGN-E700588 [FA13CC03]">
      <seq>acgatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaaatgatactttgtctaaacgagttcctggtttcggtacccccatgaatattctctatggtgatggtgttttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55555" stop="57160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55853" g_stop="56240" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="548" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56860" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="858" r_length="310" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E700588" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55853" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAG-AATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTG-TTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACC</genome_strand>
        <mrna_strand>ACGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCCCCATGAATATTCTCTATGGTGATGGTGTTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699563" ref_strand="+" ref_description="SGN-E699563 [FA10CB05]">
      <seq>atatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcttgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaaaccccacaaagaatgatactttgtctaaacgagttcctgggtttcggtaccaccatgaatattctctatggtgatggtgtttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55554" stop="57106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55854" g_stop="56240" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="547" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56806" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="803" r_length="256" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E699563" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55854" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGG-AAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCT-GGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTG</genome_strand>
        <mrna_strand>ATATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCTTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAACCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355889" ref_strand="+" ref_description="SGN-E355889 [cLHT-12-F4]">
      <seq>gatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccactcaagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgatggattctgggattatggatctttcattagggctgcagcacttttccagcctcttggatttggtaccaccggtggtaagaaaatgcatatgaaggagattgctgctatctttggacatgtcggtagcaaaacttgttgtggttatggtgtcaccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccgagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55555" stop="56753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55855" g_stop="56240" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56453" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="519" r_length="133" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E355889" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55855" e_stop="56240"/>
          <exon e_start="56321" e_stop="56453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTA</genome_strand>
        <mrna_strand>GATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACTCAAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGATGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTTCCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCATATGAAGGAGATTGCTGCTATCTTTGGACATGTCGGTAGCAAAACTTGTT................................................................................GTGGTTATGGTGTCACCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCGAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705742" ref_strand="+" ref_description="SGN-E705742 [FA28AA11]">
      <seq>atgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55556" stop="57175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55856" g_stop="56240" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="545" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56875" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="868" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E705742" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55856" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGG</genome_strand>
        <mrna_strand>ATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699006" ref_strand="+" ref_description="SGN-E699006 [FA08BA11]">
      <seq>cgggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagccccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55560" stop="57164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55858" g_stop="56240" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="543" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56864" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="856" r_length="313" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E699006" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55858" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAG-CCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGA</genome_strand>
        <mrna_strand>CGGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700975" ref_strand="+" ref_description="SGN-E700975 [FA14CG04]">
      <seq>gaggatgattatgattttgtttctgttggtaactctttgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55558" stop="57104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55858" g_stop="56240" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="544" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56804" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="796" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E700975" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55858" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATGATTATGATTTTGTTTCTGTTGGTAA-TCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTG</genome_strand>
        <mrna_strand>GAGGATGATTATGATTTTGTTTCTGTTGGTAACTCTTTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321839" ref_strand="+" ref_description="SGN-E321839 [cTOB-25-L18]">
      <seq>gatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaaacaaatgctaccatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55561" stop="56938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55861" g_stop="56240" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="540" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56638" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="626" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E321839" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55861" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGG</genome_strand>
        <mrna_strand>GATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAAACAAATGCTACCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272644" ref_strand="+" ref_description="SGN-E272644 [cLEM-21-J12]">
      <seq>gatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55561" stop="56915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55861" g_stop="56240" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="540" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56615" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="603" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E272644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55861" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATA</genome_strand>
        <mrna_strand>GATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310078" ref_strand="+" ref_description="SGN-E310078 [cLEZ-8-K22]">
      <seq>ctcgtgccgggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgcttttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctatnggtgaagccctcaagcttaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55560" stop="56898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55861" g_stop="56240" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="391" r_length="381" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="551" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56598" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="597" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E310078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55861" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGC-TTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTC</genome_strand>
        <mrna_strand>GATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATNGGTGAAGCCCTCAAGCTTAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355920" ref_strand="+" ref_description="SGN-E355920 [cLHT-12-P2]">
      <seq>gatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccactcaagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcacttttccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttctttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaacattactgtgatgaatacttcaaatgaacctacccatgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55561" stop="56737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55861" g_stop="56240" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56437" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="497" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E355920" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55861" e_stop="56240"/>
          <exon e_start="56321" e_stop="56437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTC</genome_strand>
        <mrna_strand>GATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACTCAAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTTCCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTCTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAACATTACTGTGATGAATACTTCAAATGAACCTACCCATGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705583" ref_strand="+" ref_description="SGN-E705583 [FA27CC07]">
      <seq>atgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatggggggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55562" stop="57178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55862" g_stop="56240" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="539" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56879" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="866" r_length="327" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E705583" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55862" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGG</genome_strand>
        <mrna_strand>ATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710523" ref_strand="+" ref_description="SGN-E710523 [FA55CG11]">
      <seq>atgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggcttcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgcctttcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaaaaatgatactttgtctaaacgagttcctggtttcgggaccaccatgaatattctctatggggatggggtttgtggcccaggtgatgttgacccaatgaacaacatcgttcttcccattacctctactacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55562" stop="57161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55862" g_stop="56240" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="539" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56861" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="850" r_length="311" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E710523" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55862" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCG-TC-TCCCATTACCTCTACTACCT</genome_strand>
        <mrna_strand>ATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTTCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTTCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAAAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGGACCACCATGAATATTCTCTATGGGGATGGGGTTTGTGGCCCAGGTGATGTTGACCCAATGAACAACATCGTTCTTCCCATTACCTCTACTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709617" ref_strand="+" ref_description="SGN-E709617 [FA52CD05]">
      <seq>tgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgcccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccacccatgaatattctctatggtgatggtgtttgtggcccaggtgatgttgacccaatgaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55563" stop="57136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55863" g_stop="56240" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="538" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56836" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="824" r_length="286" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E709617" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55863" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTG-CCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCA-CCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACA</genome_strand>
        <mrna_strand>TGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCCAGGTGATGTTGACCCAATGAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704823" ref_strand="+" ref_description="SGN-E704823 [FA25BE03]">
      <seq>gattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccacccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgcaccaatgaacaacatcgtctcccattacctctactaccttgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55564" stop="57167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55864" g_stop="56240" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="537" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56867" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="853" r_length="316" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E704823" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55864" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCA-CCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTT</genome_strand>
        <mrna_strand>GATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGCACCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704335" ref_strand="+" ref_description="SGN-E704335 [FA24AA08]">
      <seq>gattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctgcatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaacgagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacagtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55564" stop="56966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55864" g_stop="56240" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="535" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56666" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="649" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E704335" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55864" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGAT</genome_strand>
        <mrna_strand>GATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGCATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAACGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTAT-A-AAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACAGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358581" ref_strand="+" ref_description="SGN-E358581 [cLHT-22-F6]">
      <seq>gattatgattttgtttttgttggtaatcatcgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccactcaagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttcaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgtgggattctgggattatggatctttcattagggctgcagcacttttccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttctttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagcctagattactgtgatgaatacttcaaattaacctacccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55564" stop="56732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55864" g_stop="56240" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56432" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="489" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E358581" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55864" e_stop="56240"/>
          <exon e_start="56321" e_stop="56432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATG</genome_strand>
        <mrna_strand>GATTATGATTTTGTTTTTGTTGGTAATCATCGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACTCAAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTCACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTGGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTTCCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTCTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCTAGATTACTGTGATGAATACTTCAAATTAACCTACCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698585" ref_strand="+" ref_description="SGN-E698585 [FA06DF06]">
      <seq>ttatgattttgtttctgttggtaatcattgccctgttttgttcctggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtacctagatgtgtgtgaaggattgggagtgcaaccaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattacggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtaccataacttcttgcggctatggcgcccccattggcggaccactcgcttatggctctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55566" stop="56666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55866" g_stop="56240" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56366" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="423" r_length="47" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E698585" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55866" e_stop="56240"/>
          <exon e_start="56321" e_stop="56366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGATTTTGTTTCTGTTGGTAATCATTG-GGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGG-TCTATG</genome_strand>
        <mrna_strand>TTATGATTTTGTTTCTGTTGGTAATCATTGCCCTGTTTTGTTCCTGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCTAGATGTGTGTGAAGGATTGGGAGTGCAACCAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTACGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTACCATAACTTCTT................................................................................GCGGCTATGGCGCCCCCATTGGCGGACCACTCGCTTATGGCTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359444" ref_strand="+" ref_description="SGN-E359444 [cLHT-31-K24]">
      <seq>tgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccactcaagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcacttttccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttctttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55569" stop="56712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55869" g_stop="56240" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56412" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="464" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E359444" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55869" e_stop="56240"/>
          <exon e_start="56321" e_stop="56412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATAC</genome_strand>
        <mrna_strand>TGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACTCAAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTTCCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTCTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336512" ref_strand="+" ref_description="SGN-E336512 [cTOE-4-H22]">
      <seq>gattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55570" stop="56920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55870" g_stop="56240" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="531" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56620" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="599" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E336512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55870" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTG</genome_strand>
        <mrna_strand>GATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336631" ref_strand="+" ref_description="SGN-E336631 [cTOE-4-H23]">
      <seq>gattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55570" stop="56713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55870" g_stop="56240" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56413" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="464" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E336631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55870" e_stop="56240"/>
          <exon e_start="56321" e_stop="56413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACT</genome_strand>
        <mrna_strand>GATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317713" ref_strand="+" ref_description="SGN-E317713 [cTOB-8-H13]">
      <seq>gattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattaaggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgcttttttttggacatgttggtagcaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55570" stop="56535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55870" g_stop="56235" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E317713" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55870" e_stop="56235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGC-TTTTTTTGGACATGTCGGTAGCAAAAC</genome_strand>
        <mrna_strand>GATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAAGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTTGGACATGTTGGTAGCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306938" ref_strand="+" ref_description="SGN-E306938 [cLEY-11-I22]">
      <seq>ttttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55572" stop="56930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55872" g_stop="56240" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="529" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56630" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="607" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E306938" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55872" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGC</genome_strand>
        <mrna_strand>TTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554575" ref_strand="+" ref_description="SGN-E554575 [cTSC-4-L4]">
      <seq>tttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgcttttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55573" stop="57103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55873" g_stop="56240" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="529" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56803" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="780" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E554575" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55873" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGC-TTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTT</genome_strand>
        <mrna_strand>TTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278688" ref_strand="+" ref_description="SGN-E278688 [cLER-10-L10]">
      <seq>ttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcggcactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55574" stop="56735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55874" g_stop="56240" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56435" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="482" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E278688" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55874" e_stop="56240"/>
          <exon e_start="56321" e_stop="56435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCAC</genome_strand>
        <mrna_strand>TTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGGCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706494" ref_strand="+" ref_description="SGN-E706494 [FA30AE03]">
      <seq>tgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggcccaggtgatgttgacgcaatgaacaacatcgtctccccttacctctactaccttgacttgatgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55575" stop="57176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55875" g_stop="56240" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="526" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56876" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="850" r_length="324" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E706494" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55875" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGT</genome_strand>
        <mrna_strand>TGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCCAGGTGATGTTGACGCAATGAACAACATCGTCTCCCCTTACCTCTACTACCTTGACTTGATGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341379" ref_strand="+" ref_description="SGN-E341379 [cTOE-23-I4]">
      <seq>gtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55576" stop="56736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55876" g_stop="56240" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56436" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="481" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E341379" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55876" e_stop="56240"/>
          <exon e_start="56321" e_stop="56436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACT</genome_strand>
        <mrna_strand>GTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728641" ref_strand="+" ref_description="SGN-E728641 [LA18BH09]">
      <seq>tccctgttggtaatcattgggggttttgttcatggagatgacactgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcatatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaaccacatcgtctcccattacctctactaccttgacttgatgggggttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55580" stop="57179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55877" g_stop="56240" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="524" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56881" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="853" r_length="329" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E728641" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55877" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTC</genome_strand>
        <mrna_strand>TCCCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGACACTGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCATATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACCACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298940" ref_strand="+" ref_description="SGN-E298940 [cLET-42-A22]">
      <seq>ttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55578" stop="56682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55878" g_stop="56240" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56382" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="425" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E298940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55878" e_stop="56240"/>
          <exon e_start="56321" e_stop="56382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATG</genome_strand>
        <mrna_strand>TTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269895" ref_strand="+" ref_description="SGN-E269895 [cLEM-17-H16]">
      <seq>gtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccacttgcttatggtctatgctataacaaagaaatgagtcccagccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55586" stop="56695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55886" g_stop="56240" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56395" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="430" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E269895" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55886" e_stop="56240"/>
          <exon e_start="56321" e_stop="56395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAG</genome_strand>
        <mrna_strand>GTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTTGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552750" ref_strand="+" ref_description="SGN-E552750 [cTSB-4-O21]">
      <seq>cattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgactgatgggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55591" stop="57176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55891" g_stop="56240" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="510" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56876" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="833" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E552750" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55891" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGT</genome_strand>
        <mrna_strand>CATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGAC-TGATGGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578358" ref_strand="+" ref_description="SGN-E578358 [LE12CG12]">
      <seq>gggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgtttgacgcatgaaacacatcgtctcccattacctctactacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55597" stop="57162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55897" g_stop="56240" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="504" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56862" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="814" r_length="310" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E578358" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55897" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATG-TTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTT</genome_strand>
        <mrna_strand>GGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTTGACGC-ATGAAACACATCGTCTCCCATTACCTCTACTACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710796" ref_strand="+" ref_description="SGN-E710796 [FA56DA09]">
      <seq>cctttagttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttccctggtttcggtaccaccatgaatattctctatggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55600" stop="57096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55898" g_stop="56240" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="503" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56796" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="748" r_length="245" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E710796" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55898" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTT-CCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGAT</genome_strand>
        <mrna_strand>CCTTTAGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731072" ref_strand="+" ref_description="SGN-E731072 [LA26AC04]">
      <seq>aaaatcgccacgcttatgattatgatattggtttctggtggatctcgttggcgggccttgttcctgttcatcctattgagactttcattaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55619" stop="57046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55919" g_stop="56240" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="396" r_length="322" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="556" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56746" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="750" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E731072" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55919" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGT</genome_strand>
        <mrna_strand>ATTGAGACTTTCATTAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698854" ref_strand="+" ref_description="SGN-E698854 [FA07DC01]">
      <seq>atgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55620" stop="57011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55920" g_stop="56240" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="481" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56712" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="641" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E698854" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55920" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTG</genome_strand>
        <mrna_strand>ATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E440603" ref_strand="+" ref_description="SGN-E440603 [cSTA-17-D10]">
      <seq>gagtcattcaggaagcaacccacaaaagtgaagacggtgaagggtaccaagatgtgcgtcaaggattgggagtgtaacaaattgtctaaattttgttgtaatttgacaataactgattatctcgacactgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctacagcactttaccagccgcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttccttggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55622" stop="56520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55922" g_stop="56220" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E440603" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55922" e_stop="56220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACA</genome_strand>
        <mrna_strand>GAGTCATTCAGGAAGCAACCCACAAAAGTGAAGACGGTGAAGGGTACCAAGATGTGCGTCAAGGATTGGGAGTGTAACAAATTGTCTAAATTTTGTTGTAATTTGACAATAACTGATTATCTCGACACTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTACAGCACTTTACCAGCCGCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTCCTTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698749" ref_strand="+" ref_description="SGN-E698749 [FA07BH09]">
      <seq>cacgtaagcaacccacactagtgaagacggtgaagggtaccaacatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacccaatgaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55630" stop="57135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55930" g_stop="56240" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="472" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56835" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="755" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E698749" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55930" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CA-GGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAAC</genome_strand>
        <mrna_strand>CACGTAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAACATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACCCAATGAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250981" ref_strand="+" ref_description="SGN-E250981 [cLEG-17-C1]">
      <seq>tgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55659" stop="56753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55959" g_stop="56240" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56453" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="415" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E250981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55959" e_stop="56240"/>
          <exon e_start="56321" e_stop="56453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTA</genome_strand>
        <mrna_strand>TGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622747" ref_strand="+" ref_description="SGN-E622747 [73117]">
      <seq>taagggtaccaagatgtgtgtcaaggattgggagtgtaacaaattgtctaaattttgttgtaatttgacaataactgattatctcgacactgaccaatttgagctccttttcactaagaggaactcacccgttgctcaagctattggattctgggattatggatctttcattagggcttcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttccttggacatgtcggtagcagaacttcttgtggttatggagtcgccactggcggaccactcgcttacggtctatgctataacaaggaaatgagtcccagccaagattactgtgatgactacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggagatgccctcaagcttaatctgttggatcatcccgaatacattgaacaaaatgctaccatggctttccaggctgcaatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaaaaatgatactttgtctaaacgacttcctggttttggtaccaccatgaatattctctatggtgatgctgtttgtgggcaaggtgatattgacgaaatgaacaacatcgtctcccattacctgtactaccttgacttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55661" stop="57173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55960" g_stop="56240" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="441" r_length="160" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56873" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="762" r_length="321" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E622747" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55960" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGG</genome_strand>
        <mrna_strand>TAAGGGTACCAAGATGTGTGTCAAGGATTGGGAGTGTAACAAATTGTCTAAATTTTGTTGTAATTTGACAATAACTGATTATCTCGACACTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTTGCTCAAGCTATTGGATTCTGGGATTATGGATCTTTCATTAGGGCTTCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTCCTTGGACATGTCGGTAGCAGAACTTCTT................................................................................GTGGTTATGGAGTCGCCACTGGCGGACCACTCGCTTACGGTCTATGCTATAACAAGGAAATGAGTCCCAGCCAAGATTACTGTGATGACTACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGAGATGCCCTCAAGCTTAATCTGTTGGATCATCCCGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCAATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAAAATGATACTTTGTCTAAACGACTTCCTGGTTTTGGTACCACCATGAATATTCTCTATGGTGATGCTGTTTGTGGGCAAGGTGATATTGACGAAATGAACAACATCGTCTCCCATTACCTGTACTACCTTGACTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699551" ref_strand="+" ref_description="SGN-E699551 [FA10CA01]">
      <seq>ccgttcaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaccttttaacccaaccgctgttgctgcttcttgagatcatccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55669" stop="57271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55963" g_stop="56240" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="437" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56971" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="855" r_length="418" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E699551" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55963" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTA</genome_strand>
        <mrna_strand>CCGT-TCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAAC-AAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725633" ref_strand="+" ref_description="SGN-E725633 [LA04BE12]">
      <seq>ggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagccttttggatttggtaccaccggtggtaagaaaatgcagatgaaggagaatgctgcttttttttggacatgtcggtagcaaaactttttgtggttatggtgtcgccactggcggaccacttcgctttatggtctatgctataacaaagaaaagagtcccagccaagagtactgtgatgaatacttcaaataaccttacccatgcattcctggagccagatattacggtcgtggtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55664" stop="56767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55964" g_stop="56240" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56467" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="427" r_length="149" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E725633" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55964" e_stop="56240"/>
          <exon e_start="56321" e_stop="56467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGC-TTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCAC-TCGC-TTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCT</genome_strand>
        <mrna_strand>GGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTTTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGAATGCTGCTTTTTTTTGGACATGTCGGTAGCAAAACTTTTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTTCGCTTTATGGTCTATGCTATAACAAAGAAAAGAGTCCCAGCCAAGAGTACTGTGATGAATACTTCAAATAACCTTACCCATGCATTCCTGGAGCCAGATATTACGGTCGTGGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708314" ref_strand="+" ref_description="SGN-E708314 [FA35BG02]">
      <seq>cccttgatgtgtgtgaaggattgggagtgcaacaaattgtctacattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaaccaaccgctgttgctgcttcttgagatcatcctacttttgccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55668" stop="57362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55967" g_stop="56240" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="434" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57062" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="943" r_length="509" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E708314" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>944</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55967" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="57062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTT</genome_strand>
        <mrna_strand>CCCTTGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTACATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAA-CCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTTGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710725" ref_strand="+" ref_description="SGN-E710725 [FA56CA08]">
      <seq>accaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaaccaggacctcccgaaatactcaactgcgccaaacaaaaaccttttaacccaaccgctgttgctgcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55667" stop="57259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55967" g_stop="56240" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="434" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56959" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="841" r_length="407" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E710725" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55967" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTT</genome_strand>
        <mrna_strand>ACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAACCAGGACCTCCCGAAATACTCAACTGCGCCAAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703467" ref_strand="+" ref_description="SGN-E703467 [FA21CC12]">
      <seq>ccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcangacctcacgaagtactcaactgcgccgaacaaaaactttttacccaaacgctgttgctgcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55668" stop="57257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55968" g_stop="56240" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="433" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56957" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="837" r_length="404" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E703467" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55968" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTC</genome_strand>
        <mrna_strand>CCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCANGACCTCACGAAGTACTCAACTGCGCCGAACAAAAA-CTTTTTACCCAAACGCTGTTGCTGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602739" ref_strand="+" ref_description="SGN-E602739 [55811]">
      <seq>ccaagatgtgtgtcaaggattgggagtgtaacaaattgtctaaattttgttgtaatttgacaataactgattatctcgacactgaccaatttgagctccttttcactaagaggaactcacccgttgctcaagctattggattctgggattatggatctttcattagggcttcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttccttggacatgtcggtagcagaacttcttgtggttatggagtcgccactggcggaccactcgcttacggtctatgctataacaaggaaatgagtcccagccaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55668" stop="56696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55968" g_stop="56240" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56396" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="349" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E602739" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55968" e_stop="56240"/>
          <exon e_start="56321" e_stop="56396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGA</genome_strand>
        <mrna_strand>CCAAGATGTGTGTCAAGGATTGGGAGTGTAACAAATTGTCTAAATTTTGTTGTAATTTGACAATAACTGATTATCTCGACACTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTTGCTCAAGCTATTGGATTCTGGGATTATGGATCTTTCATTAGGGCTTCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTCCTTGGACATGTCGGTAGCAGAACTTCTT................................................................................GTGGTTATGGAGTCGCCACTGGCGGACCACTCGCTTACGGTCTATGCTATAACAAGGAAATGAGTCCCAGCCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325997" ref_strand="+" ref_description="SGN-E325997 [cTOD-1-I19]">
      <seq>caagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55669" stop="57007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55969" g_stop="56240" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="432" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56707" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="587" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E325997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55969" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCT</genome_strand>
        <mrna_strand>CAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250984" ref_strand="+" ref_description="SGN-E250984 [cLEG-17-E3]">
      <seq>agatgtgtgtgaaggattgggaggggaacattttgtctaaattttgttgcaccccgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattaaggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55671" stop="56753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55971" g_stop="56240" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56453" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="403" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E250984" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55971" e_stop="56240"/>
          <exon e_start="56321" e_stop="56453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTA</genome_strand>
        <mrna_strand>AGATGTGTGTGAAGGATTGGGAGGGGAACATTTTGTCTAAATTTTGTTGCACCCCGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAAGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728846" ref_strand="+" ref_description="SGN-E728846 [LA19AF03]">
      <seq>gcagtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55675" stop="57057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55972" g_stop="56240" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="429" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56757" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="634" r_length="205" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E728846" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55972" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTT</genome_strand>
        <mrna_strand>GCAGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329942" ref_strand="+" ref_description="SGN-E329942 [cTOD-5-G12]">
      <seq>gtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55675" stop="57053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55975" g_stop="56240" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="426" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56753" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="627" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E329942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55975" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACG</genome_strand>
        <mrna_strand>GTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342479" ref_strand="+" ref_description="SGN-E342479 [cTOF-8-F5]">
      <seq>gtgtgtgaaggcttgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgntggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattaccggccgtggtgccttgcctatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55675" stop="56779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55975" g_stop="56240" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56479" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="426" r_length="160" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E342479" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55975" e_stop="56240"/>
          <exon e_start="56321" e_stop="56479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTA-CGGTCGTGGTGCCTTGCCTATCTACT</genome_strand>
        <mrna_strand>GTGTGTGAAGGCTTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGNTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACCGGCCGTGGTGCCTTGCCTATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294602" ref_strand="+" ref_description="SGN-E294602 [cLET-22-N3]">
      <seq>aaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55682" stop="56937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55982" g_stop="56240" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="419" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56637" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="504" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E294602" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55982" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATG</genome_strand>
        <mrna_strand>AAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697219" ref_strand="+" ref_description="SGN-E697219 [FA01AF10]">
      <seq>aggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatgctgaatacattgaacaaaatgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55683" stop="56933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55983" g_stop="56240" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="418" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56633" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="499" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E697219" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55983" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTAC</genome_strand>
        <mrna_strand>AGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATGCTGAATACATTGAACAAAATGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295685" ref_strand="+" ref_description="SGN-E295685 [cLET-25-D24]">
      <seq>gggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatnctgaatacattgaacaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55689" stop="56930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55989" g_stop="56240" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="412" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56630" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="490" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E295685" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55989" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGC</genome_strand>
        <mrna_strand>GGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATNCTGAATACATTGAACAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698693" ref_strand="+" ref_description="SGN-E698693 [FA07BB09]">
      <seq>gggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55689" stop="56915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55989" g_stop="56240" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="412" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56615" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="475" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E698693" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55989" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATA</genome_strand>
        <mrna_strand>GGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729084" ref_strand="+" ref_description="SGN-E729084 [LA19DG09]">
      <seq>ggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttgggattaacctacccatgcactcctggagccagatattacggtcgtggggccttgcctatctactggaactacaattatggagctattggcgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggagggggatgaacccaatgaagaagggccagccttcagctcatgatgcctcttgtggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55690" stop="57077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55990" g_stop="56240" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="411" r_length="160" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56777" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="636" r_length="225" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E729084" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55990" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCAT</genome_strand>
        <mrna_strand>GGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTGGGATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGGGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGCGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGGGGATGAACCCAATGAAGAAGGGCCAGCCTTCAGCTCATGATGCCTCTTGTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706544" ref_strand="+" ref_description="SGN-E706544 [FA30BA10]">
      <seq>gacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagcccccgccatacaataaacgttgggaatcataattgccattctagntgntctatcatgtaatatttttggacttgcattttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55726" stop="57363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56026" g_stop="56240" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="375" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57063" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="886" r_length="511" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E706544" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56026" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="57063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTT</genome_strand>
        <mrna_strand>GACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCCGCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGNTGNTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734888" ref_strand="+" ref_description="SGN-E734888 [LB13DE01]">
      <seq>tttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55768" stop="57364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56068" g_stop="56240" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="333" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57064" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="845" r_length="512" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E734888" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56068" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="57064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTT</genome_strand>
        <mrna_strand>TTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271236" ref_strand="+" ref_description="SGN-E271236 [cLEM-5-K2]">
      <seq>gaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55780" stop="57047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56080" g_stop="56240" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="321" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56747" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="516" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E271236" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56080" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTC</genome_strand>
        <mrna_strand>GAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213964" ref_strand="+" ref_description="SGN-E213964 [cLEC-80-E16]">
      <seq>ccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaagtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgaatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgcccgacnaaaaccttttaacccaaccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55788" stop="57246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56088" g_stop="56240" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="313" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56946" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="708" r_length="395" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E213964" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56088" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTG-ATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCT</genome_strand>
        <mrna_strand>CCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAAGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGAATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCCGACNAAAACCTTTTAACCCAACCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271572" ref_strand="+" ref_description="SGN-E271572 [cLEM-23-H5]">
      <seq>ccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55788" stop="57175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56088" g_stop="56240" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="313" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56875" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="636" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E271572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56088" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGG</genome_strand>
        <mrna_strand>CCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271723" ref_strand="+" ref_description="SGN-E271723 [cLEM-23-H6]">
      <seq>ctcatgctgttggattctgggattatggatctttcattagggcggcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttattgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattactgtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatgctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55794" stop="57009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56094" g_stop="56240" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="307" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56709" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="464" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E271723" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56094" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTT</genome_strand>
        <mrna_strand>CTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCGGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTATT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACTGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATGCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707140" ref_strand="+" ref_description="SGN-E707140 [FA32AF12]">
      <seq>ctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatagcatagaccataagcgagtggtccgccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttatgttcatggtttgatttataaatatatatatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55800" stop="57404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56100" g_stop="56240" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56350" i_length="110">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56351" g_stop="56480" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="265" r_length="124" r_score="0.862"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57104" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="816" r_length="551" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E707140" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56100" e_stop="56240"/>
          <exon e_start="56351" e_stop="56480"/>
          <exon e_start="56553" e_stop="57104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATG</genome_strand>
        <mrna_strand>CTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT..............................................................................................................GTGGTTATAGCATAGACCAT-A-AGCG-AGTG-GT-CC-GCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA-TTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269558" ref_strand="+" ref_description="SGN-E269558 [cLEM-2-A24]">
      <seq>gattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55814" stop="57051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56114" g_stop="56240" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="287" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56751" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="486" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E269558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56114" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAA</genome_strand>
        <mrna_strand>GATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309172" ref_strand="+" ref_description="SGN-E309172 [cLEZ-12-G1]">
      <seq>gatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaaaaagggtcagccttcagctcatgatgcctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55821" stop="57010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56121" g_stop="56240" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="280" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56710" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="438" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E309172" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56121" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTG</genome_strand>
        <mrna_strand>GATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAAAAGGGTCAGCCTTCAGCTCATGATGCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245983" ref_strand="+" ref_description="SGN-E245983 [cLEF-54-A16]">
      <seq>tgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55837" stop="57175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56137" g_stop="56240" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="264" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56875" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="587" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E245983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56137" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGG</genome_strand>
        <mrna_strand>TGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714538" ref_strand="+" ref_description="SGN-E714538 [FB11CH10]">
      <seq>ccgctctttaccaacctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttggtctatcatgtaatatttttggacttgcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55839" stop="57359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56139" g_stop="56240" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="262" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57059" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="769" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E714538" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56139" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="57059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTT</genome_strand>
        <mrna_strand>CCGCTCTTTACCAACCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGGTCTATCATGTAATATTTTTGGACTTGCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248346" ref_strand="+" ref_description="SGN-E248346 [cLEG-1-H10]">
      <seq>agcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55840" stop="57182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56140" g_stop="56240" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="261" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56882" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="591" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E248346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56140" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCG</genome_strand>
        <mrna_strand>AGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311662" ref_strand="+" ref_description="SGN-E311662 [cLEZ-9-H17]">
      <seq>cactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcangacctcacgaagtactcaactgcgccgaacaaaaaccttttaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55842" stop="57238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56142" g_stop="56240" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="259" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56938" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="645" r_length="386" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E311662" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56142" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACC</genome_strand>
        <mrna_strand>CACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCANGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272949" ref_strand="+" ref_description="SGN-E272949 [cLEM-25-C7]">
      <seq>tcttggatttggtacccaccccgtggtaagaaaatgccagatgaaggagaatgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcccttatggtctatgctataacaaagaaatgagtcccagccaagattacctgtgatgaataccttcaaattaacctacccctgcccctcctggagcccgatattaccggtcgtggtgccttgcctatctacctggaacctaccaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55855" stop="57039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56155" g_stop="56240" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="254" r_length="165" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.886" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56739" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="443" r_length="189" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E272949" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56155" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGATTTGGTA-CCA-CCGGTGGTAAGAAAATG-CAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTA-CTGTGATGAATA-CTTCAAATTAACCTACCCATG-CACTCCTGGAGCCAGATATTA-CGGTCGTGGTGCCTTGCCTATCTA-CTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAA-CTA-CAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGAT</genome_strand>
        <mrna_strand>TCTTGGATTTGGTACCCACCCCGTGGTAAGAAAATGCCAGATGAAGGAGAATGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCCCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACCTGTGATGAATACCTTCAAATTAACCTACCCCTGCCCCTCCTGGAGCCCGATATTACCGGTCGTGGTGCCTTGCCTATCTACCTG........................................................................GAACCTACCAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231072" ref_strand="+" ref_description="SGN-E231072 [cLED-5-B22]">
      <seq>aaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55883" stop="57182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56183" g_stop="56240" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="218" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56882" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="548" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E231072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56183" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCG</genome_strand>
        <mrna_strand>AAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231278" ref_strand="+" ref_description="SGN-E231278 [cLED-5-F16]">
      <seq>aaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaagtgatgttgacgcaatgaacaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55883" stop="57138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56183" g_stop="56240" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="218" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56838" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="504" r_length="286" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E231278" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56183" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATC</genome_strand>
        <mrna_strand>AAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAAGTGATGTTGACGCAATGAACAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247347" ref_strand="+" ref_description="SGN-E247347 [cLEF-46-A9]">
      <seq>agattgctgctttttttggacatgtcggtagcaaaacttcttgtgggtatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55899" stop="56980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56199" g_stop="56240" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="202" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56680" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="330" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E247347" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56199" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGA</genome_strand>
        <mrna_strand>AGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGGTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224338" ref_strand="-" ref_description="SGN-E224338 [cLEL-19-M10](-)">
      <seq>gctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagcccttaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55904" stop="56982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56204" g_stop="56240" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="197" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56682" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="327" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E224338" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224338" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56204" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAG</genome_strand>
        <mrna_strand>GCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTTAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306552" ref_strand="+" ref_description="SGN-E306552 [cLEX-13-B20]">
      <seq>ttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55914" stop="57169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56214" g_stop="56240" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="187" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="56869" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="504" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E306552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56214" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="56869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGA</genome_strand>
        <mrna_strand>TTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303468" ref_strand="+" ref_description="SGN-E303468 [cLEX-2-K5]">
      <seq>tcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagcttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcangacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55923" stop="57316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56223" g_stop="56240" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="178" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57016" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="641" r_length="463" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E303468" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56223" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="57016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCA</genome_strand>
        <mrna_strand>TCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAG-CTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCANGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553304" ref_strand="+" ref_description="SGN-E553304 [cTSB-4-G19]">
      <seq>aaacttcttgtggttatggtgtcgccactggcggaccactcgcttatgtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56013" stop="57440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56232" g_stop="56240" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="168" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57140" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="757" r_length="589" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E553304" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56232" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="57140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTT-TTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTG</genome_strand>
        <mrna_strand>AAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTAT-GTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554782" ref_strand="+" ref_description="SGN-E554782 [cTSC-5-G19]">
      <seq>aaacttcttgtggttatggtgtcgccactggcggaccactcgcttatgtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctctaggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacgaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggttcgcgtagaaacaagacctctctaattactcaactgcgcctaactaaaaccttttaacccatccgctgttgcttgcttcttgagatcatcctactttacccccgcccatacaataaaacgttgggaatcattattgccattctaatttgtctatcatgtaatatttttggacttcgcatttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56013" stop="57366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56232" g_stop="56240" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="168" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57066" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="686" r_length="518" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E554782" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56232" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="57066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGG-TCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGC-TGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAAT-AAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTT-GCATTTTTTTTTTTT</genome_strand>
        <mrna_strand>AAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTAT-GTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTAGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACGAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTTCGCGTAGAAACAAGACCTCTCTAATTACTCAACTGCGCCTAACTAAAACCTTTTAACCCATCCGCTGTTGCTTGCTTCTTGAGATCATCCTACTTTACCCCCGCCCATACAATAAAACGTTGGGAATCATTATTGCCATTCTAATTTGTCTATCATGTAATATTTTTGGACTTCGCATTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271140" ref_strand="+" ref_description="SGN-E271140 [cLEM-22-B16]">
      <seq>ctggcggaccactctcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattactgtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcatctcatgatgcctttgtaggcaactggaagcccacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56039" stop="57031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56339" g_stop="56480" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="56731" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="321" r_length="179" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E271140" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56339" e_stop="56480"/>
          <exon e_start="56553" e_stop="56731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAA</genome_strand>
        <mrna_strand>CTGGCGGACCACTCTCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACTGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCATCTCATGATGCCTTTGTAGGCAACTGGAAGCCCACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345308" ref_strand="-" ref_description="SGN-E345308 [cTOF-13-J6]">
      <seq>atgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactgaaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56064" stop="57365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56364" g_stop="56480" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57065" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="630" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E345308" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345308" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56364" e_stop="56480"/>
          <exon e_start="56553" e_stop="57065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTT</genome_strand>
        <mrna_strand>ATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................AAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733468" ref_strand="+" ref_description="SGN-E733468 [LB10AD06]">
      <seq>taataaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56070" stop="57420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56370" g_stop="56480" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57119" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="677" r_length="566" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="696"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E733468" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56370" e_stop="56480"/>
          <exon e_start="56553" e_stop="57119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCT</genome_strand>
        <mrna_strand>TAATAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA-TTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726808" ref_strand="+" ref_description="SGN-E726808 [LA12DE07]">
      <seq>aagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaaccttctatgttgtaatttgtaaaactgcaattctactgccctgttgcatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56075" stop="57466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56375" g_stop="56480" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57173" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="726" r_length="620" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E726808" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56375" e_stop="56480"/>
          <exon e_start="56553" e_stop="57173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAG</genome_strand>
        <mrna_strand>AAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA-TTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAACCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGCCCTGTTGCATTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732032" ref_strand="+" ref_description="SGN-E732032 [LB01AD06]">
      <seq>aagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactgcaattctactgtcctgttgcatttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56075" stop="57466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56375" g_stop="56480" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57173" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="726" r_length="620" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E732032" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56375" e_stop="56480"/>
          <exon e_start="56553" e_stop="57173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAG</genome_strand>
        <mrna_strand>AAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA-TTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598077" ref_strand="-" ref_description="SGN-E598077 [73745]">
      <seq>gagtcccagccaagattactgtgatgactacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctgttggatcatcccgaatacattgaacaaaatgcagcctggaaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56082" stop="56938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56382" g_stop="56480" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="56644" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="190" r_length="91" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E598077" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598077" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56382" e_stop="56480"/>
          <exon e_start="56553" e_stop="56644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCC</genome_strand>
        <mrna_strand>GAGTCCCAGCCAAGATTACTGTGATGACTACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTGTTGGATCATCCCGAATACATTGAACAAAATGC-AGCCTGGAAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270461" ref_strand="+" ref_description="SGN-E270461 [cLEM-1-B20]">
      <seq>aagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcangacctcacgaagtactcaactgcgccgaacaaaaacctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56093" stop="57235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56393" g_stop="56480" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="56935" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="471" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E270461" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56393" e_stop="56480"/>
          <exon e_start="56553" e_stop="56935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTA</genome_strand>
        <mrna_strand>AAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCANGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255621" ref_strand="+" ref_description="SGN-E255621 [cLEG-36-D9]">
      <seq>ttactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaagtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaagacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56097" stop="57349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56397" g_stop="56480" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57049" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="581" r_length="497" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E255621" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56397" e_stop="56480"/>
          <exon e_start="56553" e_stop="57049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGAC</genome_strand>
        <mrna_strand>TTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAAGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAAGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714411" ref_strand="+" ref_description="SGN-E714411 [FB11BE06]">
      <seq>gaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactgcaattctactgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56107" stop="57452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56407" g_stop="56480" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57150" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="671" r_length="597" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="683"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E714411" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56407" e_stop="56480"/>
          <exon e_start="56553" e_stop="57150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACT</genome_strand>
        <mrna_strand>GAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA-TTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239806" ref_strand="+" ref_description="SGN-E239806 [cLED-29-G18]">
      <seq>tcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56114" stop="57246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56414" g_stop="56480" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="56946" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="461" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E239806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56414" e_stop="56480"/>
          <exon e_start="56553" e_stop="56946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCT</genome_strand>
        <mrna_strand>TCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715208" ref_strand="+" ref_description="SGN-E715208 [FB13CF02]">
      <seq>atgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgggaagcttctatgttgaaatttgaaaaactgcaattctactgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56130" stop="57452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56430" g_stop="56480" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57150" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="651" r_length="600" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="654" polyA_stop="670"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E715208" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56430" e_stop="56480"/>
          <exon e_start="56553" e_stop="57150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA--TTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACT</genome_strand>
        <mrna_strand>ATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGGGAAGCTTCTATGTTGAAATTTGAAAAACTGCAATTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734932" ref_strand="+" ref_description="SGN-E734932 [LB13DH10]">
      <seq>ctcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgggaaaaaaaaaaaaaaaaaaaaaatcccccgggggggggccgggaccccatttcccccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56135" stop="57413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56435" g_stop="56480" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57113" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="607" r_length="561" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="628"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E734932" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56435" e_stop="56480"/>
          <exon e_start="56553" e_stop="57113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAA</genome_strand>
        <mrna_strand>CTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267477" ref_strand="+" ref_description="SGN-E267477 [cLEI-8-P17]">
      <seq>ggtgccttgcctatctgactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaatgtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaatcaggaccttacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgaaatcatcctactttatccccggccatacaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56161" stop="57294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56461" g_stop="56480" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="56994" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="463" r_length="442" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E267477" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56461" e_stop="56480"/>
          <exon e_start="56553" e_stop="56994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCTTGCCTATCT-ACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAA</genome_strand>
        <mrna_strand>GGTGCCTTGCCTATCTGACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAATGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAATCAGGACCTTACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAAATCATCCTACTTTATCCCCGGCCATACAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344453" ref_strand="+" ref_description="SGN-E344453 [cTOF-14-K6]">
      <seq>tgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56163" stop="57428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56463" g_stop="56480" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57133" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="599" r_length="581" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E344453" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56463" e_stop="56480"/>
          <exon e_start="56553" e_stop="57133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGT</genome_strand>
        <mrna_strand>TGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339143" ref_strand="+" ref_description="SGN-E339143 [cTOF-6-B17]">
      <seq>gcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggnggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactgcaattctactgtcctgttgcatttcaaannaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56252" stop="57466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56469" g_stop="56480" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57173" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="634" r_length="622" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E339143" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56469" e_stop="56480"/>
          <exon e_start="56553" e_stop="57173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGG-GGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAG</genome_strand>
        <mrna_strand>GCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGNGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCAAANNAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732968" ref_strand="+" ref_description="SGN-E732968 [LB03CE05]">
      <seq>cgggtactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgggaagcttctatgttgtaatttgtaaaactgcaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56252" stop="57444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56478" g_stop="56480" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56553" g_stop="57142" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="592" r_length="589" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="611"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E732968" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56478" e_stop="56480"/>
          <exon e_start="56553" e_stop="57142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCA</genome_strand>
        <mrna_strand>CGG........................................................................GTACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA-TTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGGGAAGCTTCTATGTTGTAATTTGTAAAACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265058" ref_strand="+" ref_description="SGN-E265058 [cLEI-2-M14]">
      <seq>aagcttcacattacatatatatatatatttataaagcaaaacatgaacataaaaaaaaaaaaatgcaagtccaaaaatattacatgatagaacaactagaatggcaattatgattcccaacgtttattgtatgggcggggctaaagtaggatgatctcaagaagcagcaacagcggttgggttaaaaggtttttgttcggcgcagttgagtacttcgtgaggtcctgcttcctcgcgaccaacccccatcaagtcaaggtagtagaggtaatgggagacgatgttgttcattgcgtcaacatcaccttggccacaaacaccatcaccatagagaatattcatggtggtaccgaaaccaggaactcgtttagacaaagtatcattctttgtgggcttccagttgcccacaaaggcatcatgagctgaaggctgacccttcttcattgggttcatccacctccaaatggcagcctggaaagccatggtagcattttgttcaatgtattcaggatgatccaagagattaagcttgagggcttcaccaatagctccataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="57417" stop="56262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57117" g_stop="56562" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E265058" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57117" e_stop="56562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTCACATTACATATATATATATATTTATAAATCAAACCATGAACATAAAAAAAAAAAAATGCAAGTCCAAAAATATTACATGATAGAACAACTAGAATGGCAATTATGATTCCCAACGTTTATTGTATGGGCGGGGCTAAAGTAGGATGATCTCAAGAAGCAGCAACAGCGGTTGGGTTAAAAGGTTTTTGTTCGGCGCAGTTGAGTACTTCGTGAGGTCCTGCTTCCTCGCGACCAACCCCCATCAAGTCAAGGTAGTAGAGGTAATGGGAGACGATGTTGTTCATTGCGTCAACATCACCTTGGCCACAAACACCATCACCATAGAGAATATTCATGGTGGTACCGAAACCAGGAACTCGTTTAGACAAAGTATCATTCTTTGTGGGCTTCCAGTTGCCCACAAAGGCATCATGAGCTGAAGGCTGACCCTTCTTCATTGGGTTCATCCACCTCCAAATGGCAGCCTGGAAAGCCATGGTAGCATTTTGTTCAATGTATTCAGGATGATCCAAGAGATTAAGCTTGAGGGCTTCACCAATAGCTCCATAA</genome_strand>
        <mrna_strand>AAGCTTCACATTACATATATATATATATTTATAAAGCAAAACATGAACATAAAAAAAAAAAAATGCAAGTCCAAAAATATTACATGATAGAACAACTAGAATGGCAATTATGATTCCCAACGTTTATTGTATGGGCGGGGCTAAAGTAGGATGATCTCAAGAAGCAGCAACAGCGGTTGGGTTAAAAGGTTTTTGTTCGGCGCAGTTGAGTACTTCGTGAGGTCCTGCTTCCTCGCGACCAACCCCCATCAAGTCAAGGTAGTAGAGGTAATGGGAGACGATGTTGTTCATTGCGTCAACATCACCTTGGCCACAAACACCATCACCATAGAGAATATTCATGGTGGTACCGAAACCAGGAACTCGTTTAGACAAAGTATCATTCTTTGTGGGCTTCCAGTTGCCCACAAAGGCATCATGAGCTGAAGGCTGACCCTTCTTCATTGGGTTCATCCACCTCCAAATGGCAGCCTGGAAAGCCATGGTAGCATTTTGTTCAATGTATTCAGGATGATCCAAGAGATTAAGCTTGAGGGCTTCACCAATAGCTCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228443" ref_strand="+" ref_description="SGN-E228443 [cLED-3-I15]">
      <seq>gaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56278" stop="57415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56578" g_stop="57115" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E228443" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56578" e_stop="57115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGC</genome_strand>
        <mrna_strand>GAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290376" ref_strand="+" ref_description="SGN-E290376 [cLES-20-I6]">
      <seq>gaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56278" stop="57261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56578" g_stop="56961" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E290376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56578" e_stop="56961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGA</genome_strand>
        <mrna_strand>GAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715703" ref_strand="+" ref_description="SGN-E715703 [FB15AB06]">
      <seq>caatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactgcaattctactgtcctgttgcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56312" stop="57461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56611" g_stop="57160" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="560"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E715703" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56611" e_stop="57160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGC</genome_strand>
        <mrna_strand>CAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA-TTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342993" ref_strand="+" ref_description="SGN-E342993 [cTOF-11-A21]">
      <seq>aatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttaatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaaatttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56326" stop="57437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56626" g_stop="57131" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="526"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E342993" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56626" e_stop="57131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAG-AAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTT-ATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTT</genome_strand>
        <mrna_strand>AATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTAATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552720" ref_strand="+" ref_description="SGN-E552720 [cTSB-4-N1]">
      <seq>atgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgggaagcttctatgttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56327" stop="57428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56627" g_stop="57127" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="521"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E552720" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56627" e_stop="57127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTT-ATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTA</genome_strand>
        <mrna_strand>ATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGGGAAGCTTCTATGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272016" ref_strand="+" ref_description="SGN-E272016 [cLEM-8-F3]">
      <seq>tccaggctgccatttggaggtggatgaacccaatgaagaaggtcagccttcagctnatgatgcctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactgcaattctactgtcctgttgcatttcatccccaggcaaacatctctgttacccatactttgatacggagctatcattgttttgccgaaaataacataattataaagcctatttctgaagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56342" stop="57565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56642" g_stop="57267" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E272016" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56642" e_stop="57267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAGGCAAACATCTCTGTTACCCATACTTTGATACGGAGCTATCATTGTTTTGCCGAAAATAACATAATTATAAAGCCTATTTCTGAAGAAATCAATC</genome_strand>
        <mrna_strand>TCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAA-GGTCAGCCTTCAGCTNATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA-TTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAGGCAAACATCTCTGTTACCCATACTTTGATACGGAGCTATCATTGTTTTGCCGAAAATAACATAATTATAAAGCCTATTTCTGAAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552728" ref_strand="+" ref_description="SGN-E552728 [cTSB-4-N18]">
      <seq>cctttgtgggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactgcaattctactgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56405" stop="57451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56705" g_stop="57156" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E552728" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56705" e_stop="57156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTAT-AA-ATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTG</genome_strand>
        <mrna_strand>CCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363868" ref_strand="+" ref_description="SGN-E363868 [cLPT-10-J16]">
      <seq>ggatcccccggtctgacagattacagcgcacattgcatatatatatatatatttataaatcaaaccatgaacataaaaaaaaatgcaagtccaaaaatattacatgatagaacaactagaatggcaattatgattcccaacgtttattgtatggggcgggctgaagtaggatgatctcaagaagcagcaacagcggttgggttaaaaggtttttgttcggcgcatttgattacttcgtgaggtcctgcttcctcgcgaccaaccccgatcaagtcaaggtcgtagaggtaatgggagacgatgttgttcattgcgtcaacatcaccttggccacaaacaccatcaccatagagaatattcatggtggtaccgaaaccaggaactcgtttagacaaagtatcattctttgggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="57405" stop="56424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57103" g_stop="56724" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="414" r_length="376" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E363868" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57103" e_stop="56724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATATATATTTATAAATCAAACCATGAACATAAAAAAAAAAAAATGCAAGTCCAAAAATATTACATGATAGAACAACTAGAATGGCAATTATGATTCCCAACGTTTATTGTATGGGCGGGGCTAAAGTAGGATGATCTCAAGAAGCAGCAACAGCGGTTGGGTTAAAAGGTTTTTGTTCGGCGCAGTTGAGTACTTCGTGAGGTCCTGCTTCCTCGCGACCAACCCCCATCAAGTCAAGGTAGTAGAGGTAATGGGAGACGATGTTGTTCATTGCGTCAACATCACCTTGGCCACAAACACCATCACCATAGAGAATATTCATGGTGGTACCGAAACCAGGAACTCGTTTAGACAAAGTATCATTCTTTGTGGGC</genome_strand>
        <mrna_strand>ATATATATATATATTTATAAATCAAACCATGAACATAAAAAAAA----ATGCAAGTCCAAAAATATTACATGATAGAACAACTAGAATGGCAATTATGATTCCCAACGTTTATTGTATGGGGCGGGCTGAAGTAGGATGATCTCAAGAAGCAGCAACAGCGGTTGGGTTAAAAGGTTTTTGTTCGGCGCATTTGATTACTTCGTGAGGTCCTGCTTCCTCGCGACCAACCCCGATCAAGTCAAGGTCGTAGAGGTAATGGGAGACGATGTTGTTCATTGCGTCAACATCACCTTGGCCACAAACACCATCACCATAGAGAATATTCATGGTGGTACCGAAACCAGGAACTCGTTTAGACAAAGTATCATTCTTTGGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308446" ref_strand="+" ref_description="SGN-E308446 [cLEY-21-C15]">
      <seq>caaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttaaaaaaaaaaaaaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56429" stop="57417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56729" g_stop="57117" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="403"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E308446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56729" e_stop="57117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTT</genome_strand>
        <mrna_strand>CAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238848" ref_strand="+" ref_description="SGN-E238848 [cLEL-9-E18](-)">
      <seq>tactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggttatgttgacgcaatgaacaacatcgtctcccattacctctacgaccttgacttaatgggggttggtcgcgaggaagcaggacctccccaagtactcaattgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56439" stop="57413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56739" g_stop="57113" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="395"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E238848" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56739" e_stop="57113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAA</genome_strand>
        <mrna_strand>TACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTTATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACGACCTTGACTTAATGGGGGTTGGTCGCGAGGAAGCAGGACCTCCCCAAGTACTCAATTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689708" ref_strand="+" ref_description="SGN-E689708 [LH_Ea01J18]">
      <seq>cattgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacacaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagcccgccccatacaataaacgttgcgaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaaaatatatatatggagtgtgaagcttctatgttgtaatttgtaaaactgcaattctattgccctgttgcatttcatccccaggcaaaaaaaaaaaaaaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56441" stop="57480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56741" g_stop="57173" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="455"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E689708" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56741" e_stop="57173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAG</genome_strand>
        <mrna_strand>CATTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACACAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCGCCCCATACAATAAACGTTGCGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAA-A-ATATATATATGGAGTGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTATTGCCCTGTTGCATTTCATCCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691534" ref_strand="+" ref_description="SGN-E691534 [LH_Ea06F20]">
      <seq>cgttttaagacgagttcctggtttcggnaccaccatgaatactttttatggtgatggtgtttgtggccaaggtgatgttgacacaatgaacaacatcgtctcccattacctctactccctagacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagcccgccccatacaataaacgttgcgaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaaaatatatatatgtagtgtgaagcttctatgttgtaatttgtaaaactgcaattctattgccctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56443" stop="57459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56741" g_stop="57159" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E691534" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56741" e_stop="57159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTG</genome_strand>
        <mrna_strand>CGTT-TTAAGACGAGTTCCTGGTTTCGGNACCACCATGAATACTTTTTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACACAATGAACAACATCGTCTCCCATTACCTCTACTCCCTAGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCGCCCCATACAATAAACGTTGCGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAA-A-ATATATATATGTAGTGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTATTGCCCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693842" ref_strand="+" ref_description="SGN-E693842 [LH_Ea02F24](-)">
      <seq>gtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacacaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagcccgccccatacaataaacgttgcgaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaaaatatatatatgtagtgtgaaaatgctatgttgtaatttgtaaaactgcaattctattgccctgtgaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56445" stop="57461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56745" g_stop="57167" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E693842" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56745" e_stop="57167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCAT</genome_strand>
        <mrna_strand>GTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACACAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCGCCCCATACAATAAACGTTGCGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAA-A-ATATATATATGTAGTGTGAAAATGCTATGTTGTAATTTGTAAAACTGCAATTCTATTGCCCTG-TGAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693841" ref_strand="+" ref_description="SGN-E693841 [LH_Ea02F23](-)">
      <seq>gtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacacaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagcccgccccatacaataaacgttgcgaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaaaatatatatatgtagtgtgaaactgctatgttgtaatttgtaaaactgcaattctattgccctgtgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56445" stop="57461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56745" g_stop="57164" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E693841" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56745" e_stop="57164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTT</genome_strand>
        <mrna_strand>GTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACACAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCGCCCCATACAATAAACGTTGCGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAA-A-ATATATATATGTAGTGTGAAACTGCTATGTTGTAATTTGTAAAACTGCAATTCTATTGCCCTGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695374" ref_strand="+" ref_description="SGN-E695374 [LH_Ea06F20](-)">
      <seq>gtctaaacgagttcctggtttcggtaccaccatgaatattctttatggtgatggtgtttgtggccaaggtgatgttgacacaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagcccgccccatacaataatgggggagaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttttaagggtggtttgatttataaaaatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56445" stop="57401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56745" g_stop="57101" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E695374" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56745" e_stop="57101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATAT</genome_strand>
        <mrna_strand>GTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTTTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACACAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCGCCCCATACAATAATGGGGGAGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTTTAAGGGTGGTTTGATTTATAAAAATATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555019" ref_strand="+" ref_description="SGN-E555019 [cTSC-6-C23]">
      <seq>accatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactgcatttctaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56473" stop="57448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56773" g_stop="57142" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="397"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E555019" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56773" e_stop="57142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCA</genome_strand>
        <mrna_strand>ACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA-TTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238786" ref_strand="+" ref_description="SGN-E238786 [cLEL-9-E18](-)">
      <seq>gatgttgacgcaatgagcaacatgtgtctcccattacctctaacggccttgacttaatgggggttggtcccgaagaagcagggcctcccatagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctaggtgttctatcatgtaatatatttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56515" stop="57413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56815" g_stop="57113" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="321"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E238786" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56815" e_stop="57113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGACGCAATGAACAACAT-CGTCTCCCATTACCTCT-ACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAA</genome_strand>
        <mrna_strand>GATGTTGACGCAATGAGCAACATGTGTCTCCCATTACCTCTAACGGCCTTGACTTAATGGGGGTTGGTCCCGAAGAAGCAGGGCCTCCCATAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGGTGTTCTATCATGTAATATATTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309695" ref_strand="+" ref_description="SGN-E309695 [cLEY-26-A2]">
      <seq>gttgacgccaatgaacaacatcgtctcccattacctctactaccttgaccttgatgggggttggtcgcgaggaagcaggacctcacgaagtacctcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccataccaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactgcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56518" stop="57443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56818" g_stop="57142" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="330" polyA_stop="340"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E309695" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56818" e_stop="57142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACG-CAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGA-CTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTA-CTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATA-CAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCA</genome_strand>
        <mrna_strand>GTTGACGCCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACCTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACCTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACCAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342678" ref_strand="+" ref_description="SGN-E342678 [cTOF-7-D10]">
      <seq>atacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactgcaattctactgtcctgttgcatttcatccccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56686" stop="57472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56986" g_stop="57173" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="189" polyA_stop="203"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-E342678" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56986" e_stop="57173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAG</genome_strand>
        <mrna_strand>ATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372716" ref_strand="+" ref_description="SGN-E372716 [TUS-32-B8](-)">
      <seq>aagtcagtcagcttttgttctaattgatggtgaagaagcacaaaactttgttgctgggcttgctgataatgttggacttgagagtactcgggctgcaagaatggtgtctgcagctgttgctgcacgcactaggtcaaggttcttgcaagcttgggccttggaaatacagggaaagcattctgaagctgtggtggaactgttcaaaatatgtgtcatccaccagatatttcctcctgaagagttctcgcctgagatggagatggtggctcgtggacttgagaaacacttaaaagtagaccaaagggagtccctgatgaacagtcttctacaagtgtgtggtgatgagaccaggagaagtgtggctgaagctttgggtctgatgtacatgaagagtaacattgctcatcaacaagaaaacaagtatacatagatcactaatttatgcgtacaggaattgatttttaaagatgaataatgttttatgctcaaaaagacattggtgtacaagtagtactgcctgtatgcaataaccttacgaaatgcttcaagtggattattggatgtatcatgtaaaaggtaatgttatctgctagaagaaggtccaatgcacatccttctttgttctcttaatttcatcagcatagctatgaagttgaacttctttagtagtgatctcaaaacaatgaagcttacatgctgagaccagatatctatacatgtttttatcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="61974" stop="57094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61674" g_stop="61521" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61520" i_stop="58979" i_length="2542">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58978" g_stop="58886" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="247" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58885" i_stop="58576" i_length="310">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58575" g_stop="58444" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="379" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58443" i_stop="57744" i_length="700">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57743" g_stop="57405" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="718" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="730" polyA_stop="740"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E372716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61674" e_stop="61521"/>
          <exon e_start="58978" e_stop="58886"/>
          <exon e_start="58575" e_stop="58444"/>
          <exon e_start="57743" e_stop="57405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGGGTAAGGTTTTTCTACTACTTTGAATTAAATTCATTTTTTGCATTTGGACTTCTTGAAGCAGGCTATGATATTAAAAACCTTAATCCATCCACAAAGAGTATTGCATTAATCTACTTCCTTTTTGAAGCTATCATATCTTCTTTAGCATTATAGTTGGGAGAATTTGTAAGCTTAGGAGGATTATGGCAGAACCTATCACTTCTTTTTTAACAATAGACAGATGTGACCCAATTGGATTATTTAGGCCAAGTGTTTACTTGGTTCAAGTGGTGTCAGGATTTAAAATTAATTCAAGGAAGTGTGAGATTATGCCCGTTGGGGATGTGGAAGACATCCATCAATTCCCAGGTTCTAAGTTGTAGGGTTGGGGCTCTCCCAACTACCTACTTGGATTACCTTTAGGTGCTTCGAGATCATTGGGTGTGGAATCCCGGTCTTCAGGAGTGACAGGTGGCAGAAAAGATGCTTGTACAAAGGCAGGAAGGAAGTGCTTATCAAGAGCATATTATCAAATATCCTCACTTATATCTTTTCTTTGGTTCATGCTCTATCTTCAATCATAGAAAGTTGGGAAGGATCCAAAGAAATTCCCTTTGGGACGCGGCGGATGGGGCAAGGAAGTTCCACTTGGTGTGGTGGGAGCCTGTCATGTCTCCTAGAAGGTAAATGTTTTTGTGGAGAGGGTCAATAATCCATAGATATGGGGCTATGGAAGGGAGTGGAAATCTAGAAATGTGTATGCATTTTGGGAGGGAAGTTAATTTTTGGGGTCATAGGTGGTGTTAGAATAATTAATGAAATACATTTCAAGCTTGCACAGAGCATCTTGCCAAAGAGACTTGACAATACAACAATTTAGGGGCTTGGCTAGCTACTAGATGGGCGATTAGAAAGCGTAAGGTTATTTGCGTTAGCTGGTGTTATATTTGCAAGCGGGCAGGATATGGATTCATCTTCTTCTTCATTGTGGTCTTACCATGAGGATATGGGGGAACATGGTTTATTGGTTTGGTACTTCTCGGGGCTATGCTAGGGACTATGAAAGAGTTGATGTTCAGTTGGAAGAGCGGGAGAAAGAGGAGAAGACTCGGGGCTTGGAACATGGTTCCACTTGCGTTAATGTGGTCGGAGAGCTTTTGAGAGGGTAGAGTTGAGCTTTGCTTAATTAATAGTAGCCACTGATCCCTTATATTCTTTTGGTGCACCCATAAAGTTCCCAATTGTATAGAAGATTAGTTGAAGTTTGTAGAGAATCGTTTCTTTTTGTAGATTATATACCTTTTGGTATTCCTCTTGCATACGGTTAATTTTTTGCCATGTTTATGAATGAAAATATATTTACTTGATAAAAAAACTATTGAAACCGAATTAGTTAGTAAGCCCTCCTAATTAGCAATTTCATATCTTCTCATACCCTGAAATCTAAGGTATTGTCTGCGTCTTAAGCCCTTTGTTCCTGGTCCACTACTATCTCATAGGAGCCTTTTGCGGAAAATTACTTTAGTGTCTAGTCGCATATGCTATAGTTTGTTTATCATAAAAATAAAAATCAACAAAAACACATCCTAAACAGGCTCGGGAAGCATCACAACAACAACAACAACAATCACAATCCTCTCAAAATAATTCTAAACTCAAATCACAATCCTCTCAAAGAAGATTGAATTGGATCAAGTTAGGATGAGAATTGTGTGAAATTAACTTCTATGAACTGGAATATCGCACAAAATAAATGGAGGAGTGGATGTCTATTGTACAGCCTCTTCAGTTTACATCTTCCCAATGAAGCTGCTTCCACACCTCAAATTTTGTGTGAAAAGTCTCATCATAGAAATGCAAGGTAAGACTCTTGTGTTGTACATTTACTCTCCCCATACTCTTTACCACTTTTGTGCATGGGTAAGCCCCTAATATAATCGATTTAGCAAGGAAAATGGAAGGGACCTAGCAAATAAACAGTTGCTAATCATTGCCATCTTCCTCTTTTACCTTAATAAAGGAAGAACTTAGGTCTTCCATAAAAATAAATCCCTCCAAGATAATGGGATCCTGGAGCACAAAACATGCTGCATTAGCAGCTTCCGAGGAAGTTCCATACCACAAGGGATGTAAAATAGACAACCTACCCAAATGTAATTAGTGGCTGCTTCCACGGCTCGAATCTGTGACCTTATCGGTCACATGGAGACTACTTTACTGTTGCTCCAGTTTCCAAGATGAGCTAATAAAATAAGTCATCAGTTCTAAAGCCCCTATAGATTAATATGTAAGTGTAAGGAAACTAAATAACTGTTTTAGGTCCTTGTAATTTAACTAATCTATCAACTGCTCTGGTAGGCTGAATGAATCAGCCAGTGAACTTATGTATATTTCGCCACGGATTTGGTGATTGAGAGAATTATTATCTTGGAAAAGAAAAAAGCTCGTCTTCCATCTTCAGTTTCCCTCTAAAATAAACTGTTGGCATGATGAAACTAATGGATGATCAAGAATGCAATATAGTTTACTTGTACTAATGCTACTATGATCATTTAATTTTCAGGCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCGGTTTGTATTTCCTCATCTTGCCTACTTCTGTAAAGTTCGTGTGATTTATGCTCTGATTGTGTATCTCAAGGTGTGTACTGTATTAATTCTTTTAGAAGTGCCTTAACATTGAGCCATTGATATTTTAAAAACCCAGGAAAACTAATTGACAAACTTTTCCTGATCCAATTTCTGATGGAGTATGATTATGGACTATTTACTCTTTGTGGTAATTTTCCGAGTTGTCGCTATTTCAAGGAGCCAATGCTCTTTGCATCATAGTGTCAGACTATTTCATGTTATTTGTTGTTTTATTGGCATGTCTCTACAGCCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAATACAATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTACACAGATGTGTATATTGATATTGATGTTTCCTTTATTTGTTGGTTTTTCACCATCTATCTGCTTCTTGTTGATTTGTTTTTACTTGTTCTCTTCTGCAGATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGACATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAGGTCCAATGCACATCCTTCTTTGTTCTCTTAATTTCATCAGCATAGCTATGAAGTTGAACTTCTTTAGTAGTGATCTCAAAACAATGAAGCTTACATGCTGAGACCAGATATCTATACAT</genome_strand>
        <mrna_strand>AAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCG......................................................................................................................................................................................................................................................................................................................CCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGACATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAGGTCCAATGCACATCCTTCTTTGTTCTCTTAATTTCATCAGCATAGCTATGAAGTTGAACTTCTTTAGTAGTGATCTCAAAACAATGAAGCTTACATGCTGAGACCAGATATCTATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705995" ref_strand="+" ref_description="SGN-E705995 [FA28CH04]">
      <seq>cagagaatggccgatagattgattcgagccatcttggacaatagaatgacggggaaggacattttagcggatgatataattcaattacgacgcatagggaggatatcaaacgtgaaagtttcatttgatactgagaatgcacgtgataccctttttcgcgtggcagtcgactttattcttaattattgtgaaagcactgcaagtcagtcagcttttgttctaattgatggtgaagaagcacaaaactttgttgctgggcttgctgataatgttggacttgagagtactcgggctgcaagaatggtgtctgcagctgttgctgcacgcactaggtcaaggttcttgcaagcttgggccttggaaatacagggaaagcattctgaagctgtggtggaactgttcaaaatatgtgtcatccaccagatatttcctcctgaagagttctcgcctgagatggagatggtggctcgtggacttgagaaacacttaaaagtagaccaaagggagtccctgatgaacagtcttctacaagtgtgtggtgatgagaccaggagaagtgtggctgaagctttgggtctgatgtacatgaagagtaacattgctcatcaacaagaaaacaagtatacatagatcactaatttatgcgtacaggaattgatttttaaagatgaataatgttttatgctcaaaaagtcattggtgtacaagtagtactgcctgtatgcaataaccttacgaaatgcttcaagtggattattggatgtatcatgtaaaaggtaatgttatctgctagaagaaggtccaatgcacatccttctttgttctcttaatttcatcagcatagctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="62962" stop="57174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62662" g_stop="62635" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62634" i_stop="62457" i_length="178">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62456" g_stop="62401" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="84" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62400" i_stop="61882" i_length="519">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61881" g_stop="61772" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="194" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61771" i_stop="61681" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61680" g_stop="61521" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="354" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61520" i_stop="58979" i_length="2542">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58978" g_stop="58886" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="447" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58885" i_stop="58576" i_length="310">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58575" g_stop="58444" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="579" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58443" i_stop="57744" i_length="700">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57743" g_stop="57474" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="849" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E705995" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62662" e_stop="62635"/>
          <exon e_start="62456" e_stop="62401"/>
          <exon e_start="61881" e_stop="61772"/>
          <exon e_start="61680" e_stop="61521"/>
          <exon e_start="58978" e_stop="58886"/>
          <exon e_start="58575" e_stop="58444"/>
          <exon e_start="57743" e_stop="57474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAATGGCCGATAGATTGATTCGAGGTAATTTTATTTTCTAGGTTATTGTTAGGTATGCATCTGTTTTTTCCTTCATAGTTGTGCAACTCTTCTTTCATGTCTAAATTGTCTTATTGTTTAATCCATTGAAAGAATGGAAGACATGAATGATTGTTAGTTATGCACTTCCTTTTAAATCACAGTTTACAAATTTGCTTTCCAGCCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAAGTCAGTATGTTAATGGCTTCTTAGTTTTCACTATCTTTATTTATATACAAATGTGAATTGTTTGCATAGTTACTTAGTTTTTTAATTTTGTTTGCAGCCCCCTATATTTATGAGTTTGTCACACATACCATATTAACTTCTTTTGCTCCAAGTAGCCCTTTGAGCACACAGATTTGCAACTTTATACACATAAATATATGGAAATGCGAGCTCCATTTCAGGAAAGGAAATTATAAGAATGAAGTAACCCCAATATCAAAGTTTTTTATTTTGAGAATAGTAAGTGTGTATTATATCTAAAAACTATAGTTAGATAGCCTTTTCATTTTGCATGGTACCATCTCAGTTCCTCTTTTCCTTTTCAAAAAATCTGTTACTTCACTGAAGAAAAGTATTAAAGAATTGTTCAACATCATTATAATTTTTTATATTTCAAGTTCAAAAAAAATATATGATTTTTTATTTTCCAAGAATATAAGCTATACTCAACTTTGTGCTAACATGCTGGTCCATTTGTAGTTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAGGTAGCTCATTTAGCTTGATGACTGATTGCTAGATGCCCTCTTTTGCATCTTTTTACCCTCTTATAGTTTCTTCTTCTTTGCTCTTCTGCAGCACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGGGTAAGGTTTTTCTACTACTTTGAATTAAATTCATTTTTTGCATTTGGACTTCTTGAAGCAGGCTATGATATTAAAAACCTTAATCCATCCACAAAGAGTATTGCATTAATCTACTTCCTTTTTGAAGCTATCATATCTTCTTTAGCATTATAGTTGGGAGAATTTGTAAGCTTAGGAGGATTATGGCAGAACCTATCACTTCTTTTTTAACAATAGACAGATGTGACCCAATTGGATTATTTAGGCCAAGTGTTTACTTGGTTCAAGTGGTGTCAGGATTTAAAATTAATTCAAGGAAGTGTGAGATTATGCCCGTTGGGGATGTGGAAGACATCCATCAATTCCCAGGTTCTAAGTTGTAGGGTTGGGGCTCTCCCAACTACCTACTTGGATTACCTTTAGGTGCTTCGAGATCATTGGGTGTGGAATCCCGGTCTTCAGGAGTGACAGGTGGCAGAAAAGATGCTTGTACAAAGGCAGGAAGGAAGTGCTTATCAAGAGCATATTATCAAATATCCTCACTTATATCTTTTCTTTGGTTCATGCTCTATCTTCAATCATAGAAAGTTGGGAAGGATCCAAAGAAATTCCCTTTGGGACGCGGCGGATGGGGCAAGGAAGTTCCACTTGGTGTGGTGGGAGCCTGTCATGTCTCCTAGAAGGTAAATGTTTTTGTGGAGAGGGTCAATAATCCATAGATATGGGGCTATGGAAGGGAGTGGAAATCTAGAAATGTGTATGCATTTTGGGAGGGAAGTTAATTTTTGGGGTCATAGGTGGTGTTAGAATAATTAATGAAATACATTTCAAGCTTGCACAGAGCATCTTGCCAAAGAGACTTGACAATACAACAATTTAGGGGCTTGGCTAGCTACTAGATGGGCGATTAGAAAGCGTAAGGTTATTTGCGTTAGCTGGTGTTATATTTGCAAGCGGGCAGGATATGGATTCATCTTCTTCTTCATTGTGGTCTTACCATGAGGATATGGGGGAACATGGTTTATTGGTTTGGTACTTCTCGGGGCTATGCTAGGGACTATGAAAGAGTTGATGTTCAGTTGGAAGAGCGGGAGAAAGAGGAGAAGACTCGGGGCTTGGAACATGGTTCCACTTGCGTTAATGTGGTCGGAGAGCTTTTGAGAGGGTAGAGTTGAGCTTTGCTTAATTAATAGTAGCCACTGATCCCTTATATTCTTTTGGTGCACCCATAAAGTTCCCAATTGTATAGAAGATTAGTTGAAGTTTGTAGAGAATCGTTTCTTTTTGTAGATTATATACCTTTTGGTATTCCTCTTGCATACGGTTAATTTTTTGCCATGTTTATGAATGAAAATATATTTACTTGATAAAAAAACTATTGAAACCGAATTAGTTAGTAAGCCCTCCTAATTAGCAATTTCATATCTTCTCATACCCTGAAATCTAAGGTATTGTCTGCGTCTTAAGCCCTTTGTTCCTGGTCCACTACTATCTCATAGGAGCCTTTTGCGGAAAATTACTTTAGTGTCTAGTCGCATATGCTATAGTTTGTTTATCATAAAAATAAAAATCAACAAAAACACATCCTAAACAGGCTCGGGAAGCATCACAACAACAACAACAACAATCACAATCCTCTCAAAATAATTCTAAACTCAAATCACAATCCTCTCAAAGAAGATTGAATTGGATCAAGTTAGGATGAGAATTGTGTGAAATTAACTTCTATGAACTGGAATATCGCACAAAATAAATGGAGGAGTGGATGTCTATTGTACAGCCTCTTCAGTTTACATCTTCCCAATGAAGCTGCTTCCACACCTCAAATTTTGTGTGAAAAGTCTCATCATAGAAATGCAAGGTAAGACTCTTGTGTTGTACATTTACTCTCCCCATACTCTTTACCACTTTTGTGCATGGGTAAGCCCCTAATATAATCGATTTAGCAAGGAAAATGGAAGGGACCTAGCAAATAAACAGTTGCTAATCATTGCCATCTTCCTCTTTTACCTTAATAAAGGAAGAACTTAGGTCTTCCATAAAAATAAATCCCTCCAAGATAATGGGATCCTGGAGCACAAAACATGCTGCATTAGCAGCTTCCGAGGAAGTTCCATACCACAAGGGATGTAAAATAGACAACCTACCCAAATGTAATTAGTGGCTGCTTCCACGGCTCGAATCTGTGACCTTATCGGTCACATGGAGACTACTTTACTGTTGCTCCAGTTTCCAAGATGAGCTAATAAAATAAGTCATCAGTTCTAAAGCCCCTATAGATTAATATGTAAGTGTAAGGAAACTAAATAACTGTTTTAGGTCCTTGTAATTTAACTAATCTATCAACTGCTCTGGTAGGCTGAATGAATCAGCCAGTGAACTTATGTATATTTCGCCACGGATTTGGTGATTGAGAGAATTATTATCTTGGAAAAGAAAAAAGCTCGTCTTCCATCTTCAGTTTCCCTCTAAAATAAACTGTTGGCATGATGAAACTAATGGATGATCAAGAATGCAATATAGTTTACTTGTACTAATGCTACTATGATCATTTAATTTTCAGGCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCGGTTTGTATTTCCTCATCTTGCCTACTTCTGTAAAGTTCGTGTGATTTATGCTCTGATTGTGTATCTCAAGGTGTGTACTGTATTAATTCTTTTAGAAGTGCCTTAACATTGAGCCATTGATATTTTAAAAACCCAGGAAAACTAATTGACAAACTTTTCCTGATCCAATTTCTGATGGAGTATGATTATGGACTATTTACTCTTTGTGGTAATTTTCCGAGTTGTCGCTATTTCAAGGAGCCAATGCTCTTTGCATCATAGTGTCAGACTATTTCATGTTATTTGTTGTTTTATTGGCATGTCTCTACAGCCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAATACAATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTACACAGATGTGTATATTGATATTGATGTTTCCTTTATTTGTTGGTTTTTCACCATCTATCTGCTTCTTGTTGATTTGTTTTTACTTGTTCTCTTCTGCAGATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGACATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAGGTCCAATGCACATCCTTCTTTGTTCTCTTAATTTCATCAGCATAGCTATG</genome_strand>
        <mrna_strand>CAGAGAATGGCCGATAGATTGATTCGAG..................................................................................................................................................................................CCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAG...........................................................................................CACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCG......................................................................................................................................................................................................................................................................................................................CCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGTCATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAGGTCCAATGCACATCCTTCTTTGTTCTCTTAATTTCATCAGCATAGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705956" ref_strand="+" ref_description="SGN-E705956 [FA28CD10]">
      <seq>cagagaatggccgatagattgattcgagccatcttggacaatagaatgacggggaaggacattttagcggatgatataattcaattacgacgcatagggaggatatcaaacgtgaaagtttcatttgatactgagaatgcacgtgataccctttttcgcgtggcagtcgactttattcttaattattgtgaaagcactgcaagtcagtcagcttttgttctaattgatggtgaagaagcacaaaactttgttgctgggcttgctgataatgttggacttgagagtactcgggctgcaagaatggtgtctgcagctgttgctgcacgcactaggtcaaggttcttgcaagcttgggccttggaaatacagggaaagcattctgaagctgtggtggaactgttcaaaatatgtgtcatccaccagatatttcctcctgaagagttctcgcctgagatggagatggtggctcgtggacttgagaaacacttaaaagtagaccaaagggagtccctgatgaacagtcttctacaagtgtgtggtgatgagaccaggagaagtgtggctgaagctttgggtctgatgtacatgaagagtaacattgctcatcaacaagaaaacaagtatacatagatcactaatttatgcgtacaggaattgatttttaaagatgaataatgttttatgctcaaaaagtcattggtgtacaagtagtactgcctgtatgcaataaccttacgaaatgcttcaagtggattattggatgtatcatgtaaaaagtaatgttatctgctagaagaaggtccaatgcacatccttctttgttctcttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="62962" stop="57192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62662" g_stop="62635" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62634" i_stop="62457" i_length="178">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62456" g_stop="62401" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="84" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62400" i_stop="61882" i_length="519">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61881" g_stop="61772" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="194" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61771" i_stop="61681" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61680" g_stop="61521" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="354" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61520" i_stop="58979" i_length="2542">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58978" g_stop="58886" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="447" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58885" i_stop="58576" i_length="310">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58575" g_stop="58444" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="579" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58443" i_stop="57744" i_length="700">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57743" g_stop="57492" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="831" r_length="252" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E705956" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62662" e_stop="62635"/>
          <exon e_start="62456" e_stop="62401"/>
          <exon e_start="61881" e_stop="61772"/>
          <exon e_start="61680" e_stop="61521"/>
          <exon e_start="58978" e_stop="58886"/>
          <exon e_start="58575" e_stop="58444"/>
          <exon e_start="57743" e_stop="57492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAATGGCCGATAGATTGATTCGAGGTAATTTTATTTTCTAGGTTATTGTTAGGTATGCATCTGTTTTTTCCTTCATAGTTGTGCAACTCTTCTTTCATGTCTAAATTGTCTTATTGTTTAATCCATTGAAAGAATGGAAGACATGAATGATTGTTAGTTATGCACTTCCTTTTAAATCACAGTTTACAAATTTGCTTTCCAGCCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAAGTCAGTATGTTAATGGCTTCTTAGTTTTCACTATCTTTATTTATATACAAATGTGAATTGTTTGCATAGTTACTTAGTTTTTTAATTTTGTTTGCAGCCCCCTATATTTATGAGTTTGTCACACATACCATATTAACTTCTTTTGCTCCAAGTAGCCCTTTGAGCACACAGATTTGCAACTTTATACACATAAATATATGGAAATGCGAGCTCCATTTCAGGAAAGGAAATTATAAGAATGAAGTAACCCCAATATCAAAGTTTTTTATTTTGAGAATAGTAAGTGTGTATTATATCTAAAAACTATAGTTAGATAGCCTTTTCATTTTGCATGGTACCATCTCAGTTCCTCTTTTCCTTTTCAAAAAATCTGTTACTTCACTGAAGAAAAGTATTAAAGAATTGTTCAACATCATTATAATTTTTTATATTTCAAGTTCAAAAAAAATATATGATTTTTTATTTTCCAAGAATATAAGCTATACTCAACTTTGTGCTAACATGCTGGTCCATTTGTAGTTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAGGTAGCTCATTTAGCTTGATGACTGATTGCTAGATGCCCTCTTTTGCATCTTTTTACCCTCTTATAGTTTCTTCTTCTTTGCTCTTCTGCAGCACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGGGTAAGGTTTTTCTACTACTTTGAATTAAATTCATTTTTTGCATTTGGACTTCTTGAAGCAGGCTATGATATTAAAAACCTTAATCCATCCACAAAGAGTATTGCATTAATCTACTTCCTTTTTGAAGCTATCATATCTTCTTTAGCATTATAGTTGGGAGAATTTGTAAGCTTAGGAGGATTATGGCAGAACCTATCACTTCTTTTTTAACAATAGACAGATGTGACCCAATTGGATTATTTAGGCCAAGTGTTTACTTGGTTCAAGTGGTGTCAGGATTTAAAATTAATTCAAGGAAGTGTGAGATTATGCCCGTTGGGGATGTGGAAGACATCCATCAATTCCCAGGTTCTAAGTTGTAGGGTTGGGGCTCTCCCAACTACCTACTTGGATTACCTTTAGGTGCTTCGAGATCATTGGGTGTGGAATCCCGGTCTTCAGGAGTGACAGGTGGCAGAAAAGATGCTTGTACAAAGGCAGGAAGGAAGTGCTTATCAAGAGCATATTATCAAATATCCTCACTTATATCTTTTCTTTGGTTCATGCTCTATCTTCAATCATAGAAAGTTGGGAAGGATCCAAAGAAATTCCCTTTGGGACGCGGCGGATGGGGCAAGGAAGTTCCACTTGGTGTGGTGGGAGCCTGTCATGTCTCCTAGAAGGTAAATGTTTTTGTGGAGAGGGTCAATAATCCATAGATATGGGGCTATGGAAGGGAGTGGAAATCTAGAAATGTGTATGCATTTTGGGAGGGAAGTTAATTTTTGGGGTCATAGGTGGTGTTAGAATAATTAATGAAATACATTTCAAGCTTGCACAGAGCATCTTGCCAAAGAGACTTGACAATACAACAATTTAGGGGCTTGGCTAGCTACTAGATGGGCGATTAGAAAGCGTAAGGTTATTTGCGTTAGCTGGTGTTATATTTGCAAGCGGGCAGGATATGGATTCATCTTCTTCTTCATTGTGGTCTTACCATGAGGATATGGGGGAACATGGTTTATTGGTTTGGTACTTCTCGGGGCTATGCTAGGGACTATGAAAGAGTTGATGTTCAGTTGGAAGAGCGGGAGAAAGAGGAGAAGACTCGGGGCTTGGAACATGGTTCCACTTGCGTTAATGTGGTCGGAGAGCTTTTGAGAGGGTAGAGTTGAGCTTTGCTTAATTAATAGTAGCCACTGATCCCTTATATTCTTTTGGTGCACCCATAAAGTTCCCAATTGTATAGAAGATTAGTTGAAGTTTGTAGAGAATCGTTTCTTTTTGTAGATTATATACCTTTTGGTATTCCTCTTGCATACGGTTAATTTTTTGCCATGTTTATGAATGAAAATATATTTACTTGATAAAAAAACTATTGAAACCGAATTAGTTAGTAAGCCCTCCTAATTAGCAATTTCATATCTTCTCATACCCTGAAATCTAAGGTATTGTCTGCGTCTTAAGCCCTTTGTTCCTGGTCCACTACTATCTCATAGGAGCCTTTTGCGGAAAATTACTTTAGTGTCTAGTCGCATATGCTATAGTTTGTTTATCATAAAAATAAAAATCAACAAAAACACATCCTAAACAGGCTCGGGAAGCATCACAACAACAACAACAACAATCACAATCCTCTCAAAATAATTCTAAACTCAAATCACAATCCTCTCAAAGAAGATTGAATTGGATCAAGTTAGGATGAGAATTGTGTGAAATTAACTTCTATGAACTGGAATATCGCACAAAATAAATGGAGGAGTGGATGTCTATTGTACAGCCTCTTCAGTTTACATCTTCCCAATGAAGCTGCTTCCACACCTCAAATTTTGTGTGAAAAGTCTCATCATAGAAATGCAAGGTAAGACTCTTGTGTTGTACATTTACTCTCCCCATACTCTTTACCACTTTTGTGCATGGGTAAGCCCCTAATATAATCGATTTAGCAAGGAAAATGGAAGGGACCTAGCAAATAAACAGTTGCTAATCATTGCCATCTTCCTCTTTTACCTTAATAAAGGAAGAACTTAGGTCTTCCATAAAAATAAATCCCTCCAAGATAATGGGATCCTGGAGCACAAAACATGCTGCATTAGCAGCTTCCGAGGAAGTTCCATACCACAAGGGATGTAAAATAGACAACCTACCCAAATGTAATTAGTGGCTGCTTCCACGGCTCGAATCTGTGACCTTATCGGTCACATGGAGACTACTTTACTGTTGCTCCAGTTTCCAAGATGAGCTAATAAAATAAGTCATCAGTTCTAAAGCCCCTATAGATTAATATGTAAGTGTAAGGAAACTAAATAACTGTTTTAGGTCCTTGTAATTTAACTAATCTATCAACTGCTCTGGTAGGCTGAATGAATCAGCCAGTGAACTTATGTATATTTCGCCACGGATTTGGTGATTGAGAGAATTATTATCTTGGAAAAGAAAAAAGCTCGTCTTCCATCTTCAGTTTCCCTCTAAAATAAACTGTTGGCATGATGAAACTAATGGATGATCAAGAATGCAATATAGTTTACTTGTACTAATGCTACTATGATCATTTAATTTTCAGGCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCGGTTTGTATTTCCTCATCTTGCCTACTTCTGTAAAGTTCGTGTGATTTATGCTCTGATTGTGTATCTCAAGGTGTGTACTGTATTAATTCTTTTAGAAGTGCCTTAACATTGAGCCATTGATATTTTAAAAACCCAGGAAAACTAATTGACAAACTTTTCCTGATCCAATTTCTGATGGAGTATGATTATGGACTATTTACTCTTTGTGGTAATTTTCCGAGTTGTCGCTATTTCAAGGAGCCAATGCTCTTTGCATCATAGTGTCAGACTATTTCATGTTATTTGTTGTTTTATTGGCATGTCTCTACAGCCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAATACAATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTACACAGATGTGTATATTGATATTGATGTTTCCTTTATTTGTTGGTTTTTCACCATCTATCTGCTTCTTGTTGATTTGTTTTTACTTGTTCTCTTCTGCAGATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGACATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAGGTCCAATGCACATCCTTCTTTGTTCTCTTAAT</genome_strand>
        <mrna_strand>CAGAGAATGGCCGATAGATTGATTCGAG..................................................................................................................................................................................CCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAG...........................................................................................CACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCG......................................................................................................................................................................................................................................................................................................................CCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGTCATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAAGTAATGTTATCTGCTAGAAGAAGGTCCAATGCACATCCTTCTTTGTTCTCTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349923" ref_strand="+" ref_description="SGN-E349923 [cTOS-3-D19]">
      <seq>gaaatacagggaaagcattctgaagctgtggtggaactgttcaaaatatgtgtcatccaccagatatttcctcctgaagagttctcgcctgagatggagatggtggctcgtggacttgagaaacacttaaaagtagaccaaagggagtccctgatgaacagtcttctacaagtgtgtggtgatgagaccaggagaagtgtggctgaagctttgggtctgatgtacatgaagagtaacattgctcatcaacaagaaaacaagtatacatagatcactaatttatgcgtacaggaattgatttttaaagatgaataatgttttatgctcaaaaagacattggtgtacaagtagtactgcctgtatgcaataaccttacgaaatgcttcaagtggattattggatgtatcatgtaaaaggtaatgttatctgctagaagaaggtccaatgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="59272" stop="57212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58972" g_stop="58886" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58885" i_stop="58576" i_length="310">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58575" g_stop="58444" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="219" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58443" i_stop="57744" i_length="700">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57743" g_stop="57524" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="439" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="449" polyA_stop="465"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E349923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58972" e_stop="58886"/>
          <exon e_start="58575" e_stop="58444"/>
          <exon e_start="57743" e_stop="57524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCGGTTTGTATTTCCTCATCTTGCCTACTTCTGTAAAGTTCGTGTGATTTATGCTCTGATTGTGTATCTCAAGGTGTGTACTGTATTAATTCTTTTAGAAGTGCCTTAACATTGAGCCATTGATATTTTAAAAACCCAGGAAAACTAATTGACAAACTTTTCCTGATCCAATTTCTGATGGAGTATGATTATGGACTATTTACTCTTTGTGGTAATTTTCCGAGTTGTCGCTATTTCAAGGAGCCAATGCTCTTTGCATCATAGTGTCAGACTATTTCATGTTATTTGTTGTTTTATTGGCATGTCTCTACAGCCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAATACAATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTACACAGATGTGTATATTGATATTGATGTTTCCTTTATTTGTTGGTTTTTCACCATCTATCTGCTTCTTGTTGATTTGTTTTTACTTGTTCTCTTCTGCAGATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGACATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAG</genome_strand>
        <mrna_strand>GAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCG......................................................................................................................................................................................................................................................................................................................CCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGACATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322513" ref_strand="+" ref_description="SGN-E322513 [cTOB-26-B21]">
      <seq>ctgatgaacagtcttctacaagtgtgtggtgatgagaccaggagaagtgtggctgaagctttgggtctggtatgcctagtttattactccccttccctatctagaagatctggaatttgttgttcattgttgttgtgcttctattgagtgacatttcaatcggaagtggcgtctcctgtcaacttcgcttgttcttgtgctttctgaaagaattttgcccttcagctgtgtaaaatagatcttaaccgacagtgcggagaagacagaattctatcctcagtcttgtacactgtcttgctcccatttctatttgttcttttcaagctcaagtcacacaacaggagtttgttgaatgtttcctaaatccttaaatcaatacagattccaccttcacctctccaacctctgggaagttaacttttttctaatatcactactctggcagtgtgaagaagtatcttattaccatggatgttataaaattgttggattttctctttagaatttgtagacaaatctgagccaagtctagctagggcagggacagtctggactactgatgcaatacttattgcagaggttatctgctattgtaattggtcgagttatcctttgaaaatacatatggtcttattacctttgtggtattaaaagtaacatttattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="58812" stop="57543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58512" g_stop="57843" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E322513" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58512" e_stop="57843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAATACAATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTA</genome_strand>
        <mrna_strand>CTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAAATACATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322603" ref_strand="+" ref_description="SGN-E322603 [cTOB-26-E21]">
      <seq>ctgatgaacagtcttctacaagtgtgtggtgatgagaccttgagacgtgtggctgaagctttgggtctggtatgcctagtttattactccccttccctatctagaagatctggaatttgttgttcattgttgttgtgcttctattgagtgacatttcaatcggaagtggcgtctcctgtcaacttcgcttgttcttgtgctttctgaaagaattttgcccttcagctgtgtaaaatagatcttaaccgacagtgcggagaagacagaattctatcctcagtcttgtacactgtcttgctcccatttctatttgttcttttcaagctcaagtcacacaacaggagtttgttgaatgtttcctaaatccttaaatcaatacagattccaccttcacctctccaacctctgggaagttaacttttttctaatatcactactctggcagtgtgaagaagtatcttattaccatggatgttataaaattgttggattatctctttagaatctgtagacaaatctgagccaagtctagctagggcatggacagtctggactactgatgcaatacttattgcagaggttatctgctattgtaattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="58812" stop="57612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58512" g_stop="57912" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E322603" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58512" e_stop="57912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGT</genome_strand>
        <mrna_strand>CTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCTTGAGACGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTATCTCTTTAGAATCTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCATGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348905" ref_strand="+" ref_description="SGN-E348905 [cTOF-29-K11]">
      <seq>gaaaccaaatgtcttggatagagatgaaggaaatagtaattgggatttggatactccaattagcttttccaggaggcgaaagaagaagagttctgtggagcaattgcctaaatggtggcctgtttcgacttctggttccgatcaagttgggacagagaatcaagaagagtatcagagaatggccgatagattgattcgagccatcttggacaatagaatgacggggaaggacattttagcggatgatataattcaattacgacgcatagggagggtatcaaacgtgaaagtttcatttgatactgagaatgcacgtgataccctttttcgcgtggcagtcgactttattcttaattattgtgaaagcactgcaagtcagtcagcttttgttctaattgatggtgaagaagcacaaaactttgttgctgggcttgctgataatgttggacttgagagtactcgggctgcaagaatggtgtctgcagctgttgctgcacgcactangtcaaggttcttgcaagcttgggccttggaaatcagggaaagcattctgaagctgtggtggaactgttcaaatatgtgtcatccaccagatatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="63134" stop="58603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62834" g_stop="62635" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62634" i_stop="62457" i_length="178">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62456" g_stop="62401" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="256" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62400" i_stop="61882" i_length="519">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61881" g_stop="61772" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="366" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61771" i_stop="61681" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61680" g_stop="61521" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="526" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61520" i_stop="58979" i_length="2542">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58978" g_stop="58903" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="600" r_length="74" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E348905" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62834" e_stop="62635"/>
          <exon e_start="62456" e_stop="62401"/>
          <exon e_start="61881" e_stop="61772"/>
          <exon e_start="61680" e_stop="61521"/>
          <exon e_start="58978" e_stop="58903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCAAATGTCTTGGATAGAGATGAAGGAAATAGTAATTGGGATTTGGATACTCCAATTAGCTTTTCCAGGAGGCGAAAGAAGAAGAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATCAAGTTGGGACAGAGAATCAAGAAGAGTATCAGAGAATGGCCGATAGATTGATTCGAGGTAATTTTATTTTCTAGGTTATTGTTAGGTATGCATCTGTTTTTTCCTTCATAGTTGTGCAACTCTTCTTTCATGTCTAAATTGTCTTATTGTTTAATCCATTGAAAGAATGGAAGACATGAATGATTGTTAGTTATGCACTTCCTTTTAAATCACAGTTTACAAATTTGCTTTCCAGCCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAAGTCAGTATGTTAATGGCTTCTTAGTTTTCACTATCTTTATTTATATACAAATGTGAATTGTTTGCATAGTTACTTAGTTTTTTAATTTTGTTTGCAGCCCCCTATATTTATGAGTTTGTCACACATACCATATTAACTTCTTTTGCTCCAAGTAGCCCTTTGAGCACACAGATTTGCAACTTTATACACATAAATATATGGAAATGCGAGCTCCATTTCAGGAAAGGAAATTATAAGAATGAAGTAACCCCAATATCAAAGTTTTTTATTTTGAGAATAGTAAGTGTGTATTATATCTAAAAACTATAGTTAGATAGCCTTTTCATTTTGCATGGTACCATCTCAGTTCCTCTTTTCCTTTTCAAAAAATCTGTTACTTCACTGAAGAAAAGTATTAAAGAATTGTTCAACATCATTATAATTTTTTATATTTCAAGTTCAAAAAAAATATATGATTTTTTATTTTCCAAGAATATAAGCTATACTCAACTTTGTGCTAACATGCTGGTCCATTTGTAGTTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAGGTAGCTCATTTAGCTTGATGACTGATTGCTAGATGCCCTCTTTTGCATCTTTTTACCCTCTTATAGTTTCTTCTTCTTTGCTCTTCTGCAGCACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGGGTAAGGTTTTTCTACTACTTTGAATTAAATTCATTTTTTGCATTTGGACTTCTTGAAGCAGGCTATGATATTAAAAACCTTAATCCATCCACAAAGAGTATTGCATTAATCTACTTCCTTTTTGAAGCTATCATATCTTCTTTAGCATTATAGTTGGGAGAATTTGTAAGCTTAGGAGGATTATGGCAGAACCTATCACTTCTTTTTTAACAATAGACAGATGTGACCCAATTGGATTATTTAGGCCAAGTGTTTACTTGGTTCAAGTGGTGTCAGGATTTAAAATTAATTCAAGGAAGTGTGAGATTATGCCCGTTGGGGATGTGGAAGACATCCATCAATTCCCAGGTTCTAAGTTGTAGGGTTGGGGCTCTCCCAACTACCTACTTGGATTACCTTTAGGTGCTTCGAGATCATTGGGTGTGGAATCCCGGTCTTCAGGAGTGACAGGTGGCAGAAAAGATGCTTGTACAAAGGCAGGAAGGAAGTGCTTATCAAGAGCATATTATCAAATATCCTCACTTATATCTTTTCTTTGGTTCATGCTCTATCTTCAATCATAGAAAGTTGGGAAGGATCCAAAGAAATTCCCTTTGGGACGCGGCGGATGGGGCAAGGAAGTTCCACTTGGTGTGGTGGGAGCCTGTCATGTCTCCTAGAAGGTAAATGTTTTTGTGGAGAGGGTCAATAATCCATAGATATGGGGCTATGGAAGGGAGTGGAAATCTAGAAATGTGTATGCATTTTGGGAGGGAAGTTAATTTTTGGGGTCATAGGTGGTGTTAGAATAATTAATGAAATACATTTCAAGCTTGCACAGAGCATCTTGCCAAAGAGACTTGACAATACAACAATTTAGGGGCTTGGCTAGCTACTAGATGGGCGATTAGAAAGCGTAAGGTTATTTGCGTTAGCTGGTGTTATATTTGCAAGCGGGCAGGATATGGATTCATCTTCTTCTTCATTGTGGTCTTACCATGAGGATATGGGGGAACATGGTTTATTGGTTTGGTACTTCTCGGGGCTATGCTAGGGACTATGAAAGAGTTGATGTTCAGTTGGAAGAGCGGGAGAAAGAGGAGAAGACTCGGGGCTTGGAACATGGTTCCACTTGCGTTAATGTGGTCGGAGAGCTTTTGAGAGGGTAGAGTTGAGCTTTGCTTAATTAATAGTAGCCACTGATCCCTTATATTCTTTTGGTGCACCCATAAAGTTCCCAATTGTATAGAAGATTAGTTGAAGTTTGTAGAGAATCGTTTCTTTTTGTAGATTATATACCTTTTGGTATTCCTCTTGCATACGGTTAATTTTTTGCCATGTTTATGAATGAAAATATATTTACTTGATAAAAAAACTATTGAAACCGAATTAGTTAGTAAGCCCTCCTAATTAGCAATTTCATATCTTCTCATACCCTGAAATCTAAGGTATTGTCTGCGTCTTAAGCCCTTTGTTCCTGGTCCACTACTATCTCATAGGAGCCTTTTGCGGAAAATTACTTTAGTGTCTAGTCGCATATGCTATAGTTTGTTTATCATAAAAATAAAAATCAACAAAAACACATCCTAAACAGGCTCGGGAAGCATCACAACAACAACAACAACAATCACAATCCTCTCAAAATAATTCTAAACTCAAATCACAATCCTCTCAAAGAAGATTGAATTGGATCAAGTTAGGATGAGAATTGTGTGAAATTAACTTCTATGAACTGGAATATCGCACAAAATAAATGGAGGAGTGGATGTCTATTGTACAGCCTCTTCAGTTTACATCTTCCCAATGAAGCTGCTTCCACACCTCAAATTTTGTGTGAAAAGTCTCATCATAGAAATGCAAGGTAAGACTCTTGTGTTGTACATTTACTCTCCCCATACTCTTTACCACTTTTGTGCATGGGTAAGCCCCTAATATAATCGATTTAGCAAGGAAAATGGAAGGGACCTAGCAAATAAACAGTTGCTAATCATTGCCATCTTCCTCTTTTACCTTAATAAAGGAAGAACTTAGGTCTTCCATAAAAATAAATCCCTCCAAGATAATGGGATCCTGGAGCACAAAACATGCTGCATTAGCAGCTTCCGAGGAAGTTCCATACCACAAGGGATGTAAAATAGACAACCTACCCAAATGTAATTAGTGGCTGCTTCCACGGCTCGAATCTGTGACCTTATCGGTCACATGGAGACTACTTTACTGTTGCTCCAGTTTCCAAGATGAGCTAATAAAATAAGTCATCAGTTCTAAAGCCCCTATAGATTAATATGTAAGTGTAAGGAAACTAAATAACTGTTTTAGGTCCTTGTAATTTAACTAATCTATCAACTGCTCTGGTAGGCTGAATGAATCAGCCAGTGAACTTATGTATATTTCGCCACGGATTTGGTGATTGAGAGAATTATTATCTTGGAAAAGAAAAAAGCTCGTCTTCCATCTTCAGTTTCCCTCTAAAATAAACTGTTGGCATGATGAAACTAATGGATGATCAAGAATGCAATATAGTTTACTTGTACTAATGCTACTATGATCATTTAATTTTCAGGCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTC</genome_strand>
        <mrna_strand>GAAACCAAATGTCTTGGATAGAGATGAAGGAAATAGTAATTGGGATTTGGATACTCCAATTAGCTTTTCCAGGAGGCGAAAGAAGAAGAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATCAAGTTGGGACAGAGAATCAAGAAGAGTATCAGAGAATGGCCGATAGATTGATTCGAG..................................................................................................................................................................................CCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACGCATAGGGAGGGTATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAG...........................................................................................CACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTANGTCAAGGTTCTTGCAAGCTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAAAT-CAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTC-AAATATGTGTCATCCACCAGATATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727401" ref_strand="+" ref_description="SGN-E727401 [LA14CD03]">
      <seq>ccctttacggtcgataatttgcctaccaaatccttctactccctttaggacctcatccacttgaagctccgagaattcctccactcaggccgagctgccattgaagacttgcaaactctcatccgtatagataccgacgccgggagagtttccttctcctgcacaaggtccaccgttaaattcctagcaactctactagtttcaactttcctacttattttcactcttagggctattcttaacctagttcggcggataccactcaacactggaaacaacaacgttgaattagtctataagagagaccgtagtttaggtggaagagaagtacttgttgctaaaaatgagacgcctacgcttgataggaagaaaccaaatgtcttggatagagatgaaggaaatagtaattgggatttggatactccaattagcttttccaggaggcgaaagaagaagagttctgtggagcaattgcctaaatggtggcctgtttcgacttctggttccgatcaagttgggacagagaatcaagaagagtatcagagaatggccgatagattgattcgagccatcttggacaatagaatgacggggaaggacattttagcggatgatataattcaattacgacgcatagggaggatatcaaacgtgaaagtttcatttgatactgagaatgcacgtgataccctttttcgcgtggcagtcgactttattcttaattattgtgaaagcactgcaagtcagtcagcttttgttctaattgatggtgaagaagcacaaaactttgttgctgggcttgctgataatgttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="63500" stop="61297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63202" g_stop="62635" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62634" i_stop="62457" i_length="178">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62456" g_stop="62401" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="624" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62400" i_stop="61882" i_length="519">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61881" g_stop="61772" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="734" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61771" i_stop="61681" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61680" g_stop="61597" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="818" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E727401" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63202" e_stop="62635"/>
          <exon e_start="62456" e_stop="62401"/>
          <exon e_start="61881" e_stop="61772"/>
          <exon e_start="61680" e_stop="61597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGATGAAGGAAATAGTAATTGGGATTTGGATACTCCAATTAGCTTTTCCAGGAGGCGAAAGAAGAAGAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATCAAGTTGGGACAGAGAATCAAGAAGAGTATCAGAGAATGGCCGATAGATTGATTCGAGGTAATTTTATTTTCTAGGTTATTGTTAGGTATGCATCTGTTTTTTCCTTCATAGTTGTGCAACTCTTCTTTCATGTCTAAATTGTCTTATTGTTTAATCCATTGAAAGAATGGAAGACATGAATGATTGTTAGTTATGCACTTCCTTTTAAATCACAGTTTACAAATTTGCTTTCCAGCCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAAGTCAGTATGTTAATGGCTTCTTAGTTTTCACTATCTTTATTTATATACAAATGTGAATTGTTTGCATAGTTACTTAGTTTTTTAATTTTGTTTGCAGCCCCCTATATTTATGAGTTTGTCACACATACCATATTAACTTCTTTTGCTCCAAGTAGCCCTTTGAGCACACAGATTTGCAACTTTATACACATAAATATATGGAAATGCGAGCTCCATTTCAGGAAAGGAAATTATAAGAATGAAGTAACCCCAATATCAAAGTTTTTTATTTTGAGAATAGTAAGTGTGTATTATATCTAAAAACTATAGTTAGATAGCCTTTTCATTTTGCATGGTACCATCTCAGTTCCTCTTTTCCTTTTCAAAAAATCTGTTACTTCACTGAAGAAAAGTATTAAAGAATTGTTCAACATCATTATAATTTTTTATATTTCAAGTTCAAAAAAAATATATGATTTTTTATTTTCCAAGAATATAAGCTATACTCAACTTTGTGCTAACATGCTGGTCCATTTGTAGTTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAGGTAGCTCATTTAGCTTGATGACTGATTGCTAGATGCCCTCTTTTGCATCTTTTTACCCTCTTATAGTTTCTTCTTCTTTGCTCTTCTGCAGCACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACT</genome_strand>
        <mrna_strand>CCCTTTACGGTCGATAATTTGCCTACCAAATCCTTCTACTCCCTTTAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGATGAAGGAAATAGTAATTGGGATTTGGATACTCCAATTAGCTTTTCCAGGAGGCGAAAGAAGAAGAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATCAAGTTGGGACAGAGAATCAAGAAGAGTATCAGAGAATGGCCGATAGATTGATTCGAG..................................................................................................................................................................................CCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAG...........................................................................................CACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372717" ref_strand="+" ref_description="SGN-E372717 [TUS-32-B8]">
      <seq>tctctctataccatctctctctcaccttccaattccatccgcttcacttctccaaaacgatgttgtcactaccacgtcatttctcgccgagtctccccctccccttaccgtcgacgccatctccgccgccgccgcttcccctttcttaaaaagttctccccggaagacactccaccgtccgatcaaaacctccactttgtccttaccgtcgataatttgcctaccaaatccttctactcaatcaaggacctcatccacttgaagctccgagaattcctccactcaggccgagctgccattgaagacttgcaaactctcatccgtatagataccgacgccgggagagtttccttctcctgcacaaggtccaccgttaaattcctagcaactctactagtttcaactttcctacttattttcactcttagggctattcttaacctagttcggcggataccactcaacactggaaacaacaacgttgaattagtctataagagagaccgtagtttaggtggaagagaagtacttgttgctaaaaatgagacgcctacgcttgataggaagaaaccaaatgtcttggatagagatgaaggaaatagtaattgggatttggatactccaattagcttttccaggaggcgaaagaagaagagttctgtggagcaattgcctaaatggtggcctgtttcgacttctggttccgatcaagttgggacagagaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="63700" stop="62373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63400" g_stop="62673" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E372717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63400" e_stop="62673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGATGAAGGAAATAGTAATTGGGATTTGGATACTCCAATTAGCTTTTCCAGGAGGCGAAAGAAGAAGAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATCAAGTTGGGACAGAGAATCA</genome_strand>
        <mrna_strand>TCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGATGAAGGAAATAGTAATTGGGATTTGGATACTCCAATTAGCTTTTCCAGGAGGCGAAAGAAGAAGAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATCAAGTTGGGACAGAGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611870" ref_strand="+" ref_description="SGN-E611870 [61626]">
      <seq>aatgccatgaacctctctctctataacatctcactctcaccttctatccgcttcacttctccaaaacgatgtcgtcactaccacgtcatttctcggcgaatctccccctcccttccccgtcgacgccatctccgccgccgccgccttaaaaagttctccaccgaagacactccaccgtccgatcaaaacctccactttgtccttaccgtcgataatttgcctaccaaatccttctactcaatcaaggacctcctccacttgaagctcggagaattcctccactcaggccgagccgccattgaagacttgcgaactctcatccgtgtagataccgatgccgggagactttccttttcctgcacaaggtccaccgttaaattcctagcaactctagtagtttccagtttcctagttattttcactcttagggctattattaacctagtgcgggggatacgactcaacagtggaaacaacaacgttgaattagtgtataagagagaccgtagtttaggtggaagagaagtacttgttgctaaaaatgagacgcctacgcttgataggaagaaaccaaatgtcttggatagtgatgcaaggaaacagtaattgggattgggatagggatagtccaatttagcttttccaggaggcgaaagaagcaagcagttctgtggagcaattgcctaaatggtggcctgtttcgacttctggttccgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="63715" stop="62392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63415" g_stop="62692" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E611870" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63415" e_stop="62692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCCATGAACCTCTCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGATG-AAGGAAATAGTAATTGGGATT----T--GGATACTCCAA-TTAGCTTTTCCAGGAGGCGAAAGAAG-AAG-AGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATC</genome_strand>
        <mrna_strand>AATGCCATGAACCTCTCTCTCTATAACATCTCACTCTCACCTT-C---T--ATCCGCTTCACTTCTCCAAAACGATGTCGTCACTACCACGTCATTTCTCGGCGAATCTCCCCCTCCCTTCCCCGTCGACGCCATCTCCGCCGCCGCCG------C---CTTAAAAAGTTCTCCACCGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCCTCCACTTGAAGCTCGGAGAATTCCTCCACTCAGGCCGAGCCGCCATTGAAGACTTGCGAACTCTCATCCGTGTAGATACCGATGCCGGGAGACTTTCCTTTTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTAGTAGTTTCCAGTTTCCTAGTTATTTTCACTCTTAGGGCTATTATTAACCTAGTGCGGGGGATACGACTCAACAGTGGAAACAACAACGTTGAATTAGTGTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGTGATGCAAGGAAACAGTAATTGGGATTGGGATAGGGATAGTCCAATTTAGCTTTTCCAGGAGGCGAAAGAAGCAAGCAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292213" ref_strand="+" ref_description="SGN-E292213 [cLET-1-N15]">
      <seq>tctctctataccatctctctctcaccttccaattccatccgcttcacttctccaaaacgatgttgtcactaccacgtcatttctcgccgagtctccccctccccttaccgtcgacgccatctccgccgccgccgcttcccctttcttaaaaagttctccccggaagacactccaccgtccgatcaaaacctccactttgtccttaccgtcgataatttgcctaccaaatccttctactcaatcaaggacctcatccacttgaagctccgagaattcctccactcaggccgagctgccattgaagacttgcaaactctcatccgtatagataccgacgccgggagagtttccttctcctgcacaaggtccaccgttaaattcctagcaactctactagtttcaactttcctacttattttcactcttagggctattcttaacctagttcggcggataccactcaacactggaaacaacaacgttgaattagtctataagagagaccgtagtttaggtggaagagaagtacttgttgctaaaaatgagacgcctacgcttgataggaagaaaccaaatgtcttggatagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="63700" stop="62510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63400" g_stop="62810" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E292213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63400" e_stop="62810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGAT</genome_strand>
        <mrna_strand>TCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293121" ref_strand="+" ref_description="SGN-E293121 [cLET-12-F5]">
      <seq>tctctctataccatctctctctcaccttccaattccatccgcttcacttctccaaaacgatgttgtcactaccacgtcatttctcgccgagtctccccctccccttaccgtcgacgccatctccgccgccgccgcttcccctttcttaaaaagttctccccggaagacactccaccgtccgatcaaaacctccactttgtccttaccgtcgataatttgcctaccaaatccttctactcaatcaaggacctcatccacttgaagctccgagaattcctccactcaggccgagctgccattgaagacttgcaaactctcatccgtatagataccgacgccgggagagtttccttctcctgcacaaggtccaccgttaaattcctagcaactctactagtttcaactttcctacttattttcactcttagggctattcttaacctagttcggcggataccactcaacactggaaacaacaacgttgaattagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="63700" stop="62607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63400" g_stop="62907" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E293121" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63400" e_stop="62907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTA</genome_strand>
        <mrna_strand>TCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325027" ref_strand="+" ref_description="SGN-E325027 [cTOC-13-M3]">
      <seq>tctctctctataccatctctctctcaccttgcaattccatgcgcttgacttctgcaaaacgatgtggtcactaccacgtcatttctcgccgagtctccccctccccttaccgtcgacgccatctccgccgccgccgctttccctttcttaaaaagttctccccggaagacactccaccgtccgatcaaaacctccactttgtccttaccgtcgataatttgcctaccaaatccttctactcaatcaaggacctcatccacttgaagctgcgagaattcctccactcaggccgagctgccattgaagacttgcaaactctcatccgtatagataccgacgccgggagagttttcttctcctgcacaaggtccaccgttaaattcctagcaactctactagtttcaactttcctacttattttcactcttagggctattcttaacctagtttcggggcgggataccactcaacactggaaacaacaacgttggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="63702" stop="62613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63402" g_stop="62913" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E325027" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63402" e_stop="62913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAG-TTC--GGC-GGATACCACTCAACACTGGAAACAACAACGTTGAATT</genome_strand>
        <mrna_strand>TCTCTCTCTATACCATCTCTCTCTCACCTTGCAATTCCATGCGCTTGACTTCTGCAAAACGATGTGGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTTCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTGCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTTCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTTCGGGGCGGGATACCACTCAACACTGGAAACAACAACGTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338103" ref_strand="+" ref_description="SGN-E338103 [cTOE-13-K5]">
      <seq>ctctctctctataccatctctctctcaccttccaattccatccgcttcacttctccaaaacgatgttgtcactaccacgtcatttctcgccgagtctccccctccccttaccgtcgacgccatctccgccgccgccgcttcccctttcttaaaaagttctccccggaagacactccaccgtccgatcaaaacctccactttgtccttaccgtcgataatttgcctaccaaatccttctactcaatcaaggacctcatccacttgaagctccgagaattcctccactcaggccgagctgccattgaagacttgcaaactctcatccgtatagataccgacgccgggagagtttccttctcctgcacaaggtccaccgttaaattcctagcaactctactagtttcaactttcctacttattttcactcttagggctattcttaacctagttcggcggataccactcaacactggaaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="63703" stop="62623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63403" g_stop="62923" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E338103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63403" e_stop="62923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACA</genome_strand>
        <mrna_strand>CTCTCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296354" ref_strand="+" ref_description="SGN-E296354 [cLET-19-N18]">
      <seq>aacctctctctctataccatctctctctcaccttccaattccatccgcttcacttctccaaaacgatgttgtcactaccacgtcatttctcgccgagtctccccctccccttaccgtcgacgccatctccgccgccgccgcttcccctttcttaaaaagttctccccggaagacactccaccgtccgatcaaaacctccactttgtccttaccgtcgataatttgcctaccaaatccttctactcaatcaaggacctcatccacttgaagctccgagaattcctccactcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="63706" stop="62815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63406" g_stop="63115" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E296354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63406" e_stop="63115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCTCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAG</genome_strand>
        <mrna_strand>AACCTCTCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238339" ref_strand="+" ref_description="SGN-E238339 [cLED-17-C20]">
      <seq>catacactgaccgtaaactttcttcttgggatttctgttgttttcatttcaatgcatcagttcttttcacctctttcaaaagttaaagatgatcaacaaaacgggacagtggagttgattgacgtccgggagaaccatagccctaaagattcatcctttgtaaatatggcagcaggagcaaatgaggaggcaagtcatcgagtaggacctgatgaaaggcagccacttcttccaagatgaagctacttgaactgtcatttgtagcagcagatattgtggtggagagcatttacagtcattcagtgtaatatggagaagaaacagtgttgttgtagtctctcttttcttctctctccaaaatgtgcttcatgggattgtttcgcttggagagaaggatatgtggatggagaggttttaggtagacaacaacaatagagttgttatgcaatacgaatacgagctgttgtattataagttacaaacacatgaattttattgtaaacaatttagagttatcaattctttcatatattcttgtaatcaattgaattttgatgatacacccgtggatgtgttagattaaacatttctttttgtaatttcaagcaaattgtacttgaatggtaattcatttcatatatcttcttctttattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="66213" stop="63203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65913" g_stop="65854" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65853" i_stop="65774" i_length="80">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65773" g_stop="65694" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="140" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65693" i_stop="64721" i_length="973">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64720" g_stop="64672" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="189" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64671" i_stop="64579" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64578" g_stop="64515" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="253" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64514" i_stop="63906" i_length="609">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63905" g_stop="63504" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="655" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E238339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65913" e_stop="65854"/>
          <exon e_start="65773" e_stop="65694"/>
          <exon e_start="64720" e_stop="64672"/>
          <exon e_start="64578" e_stop="64515"/>
          <exon e_start="63905" e_stop="63504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAGGTATTAAAATTGAGAGAGTTCTCCCTCTGGTATTTTCTGTTTTTTCTCTTGGGGCTGATCATTTGATTTTGATACTTCAGTTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAGGTATTTACTTGTTTAGTGTAAAGCAAAACTATGTCTCAGCCCCAAGTTAGTACTTGTTTTGTGTAAAGTAAAACTATATCTCAGCCCCAAGTTATATTTCCTTGTCAGCTACTGTTCTTAGGATACTGCTTTCTGTAAACTAATTTAGTTTTTTATATATGCTGAGAATGTGATGGAAAGCAGGATTCTGATGGCTTGCTCCCGGTACATCCATTCATTGAAAATGATTTGTGTCTGCTGAATGAGTAACACGATAATCCAACTATATAGCCAACTTTTCTTGTAGCAGATGTAGTTCTGCATGTAATTCAGCTTCACAAATTTCTCATGGCTGTGACTTTTATCATGTCATTTAAGTTTATATCGTATCATTGGATTACTCTTGTCTTTATTTATGTATTTCAAAGTGTCAAGGTCCAGATGTAATCAGTTTAGAAAATGTGTGAATTTATTGCTTTCCTGCATAGCTGATGGGTTGCTTCTATTTCTTTTGTTTCTATTTATGAAAATAGTACCTCCTTGTCGCTTGATATGATGAATGCATGCCTTTTTTCTTAAAATAATATTTAAAAGATAAGTTACAAGTTATTGGCATAAGGTCCTTTGCTGTGCAAGATAAATACTAGTTTCAATTACTAAGACAACAAGTCATACTTACTATTGGGTGATGATTGATATTAGCCATACTATGTACAGAAGCATTTAATAAGTTCTTTCTTGATGCTGGTAAATACTTCGTGAGACCTTAATTGTGCAAGTTTCTTTAATTCCTTGCTGTTTTCCAACTATAACATCAAATCTATTTATTGAAAAATGGATCTGAAATAAATGCTAATCTTTTAAGGTGTGTATATCATAGAGGTGCATCTTCACTCCCTTCACCCGTCCTTTTGACCCCCCACCCCACCCCCACCCCTCACCCCAAGTTTAAAAAGCTGTATCTGTTAATACTTCCCTCTTGTATTGTTTTCAGCCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAGGTATGGATCTTTTCTTCAGAAATTTTTAGATACAAAGTTTTTGCTGTATTTCCTACTTAAACTTGGATTGATTTCATGTTAATTCTTTTCCAGGCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACTGTAAGTGTGCTAAAGTTTCTATACTTTCTGATGATCTGATCCAAGTTATTAACTTGGATACACATAAATTAAGACAATGTTCAAACTTTTTATGGGTTATGGATATGTCTCTTGGTTACACTTACTCAAGGGAAACATGTGGGAGGACAAAAAAGAAGACCAGGAGAGTTTGGTTGGCACCTTGATCATCTAATGGGATTGTATATCATGTCCTGTTTCTCTTTTTATTTTGATATGTATAAAAAGAACTAATCAACAACAACATATACCCACACAGCGGAGTCTGTTCTAGAAGAATAAACAATTTCACCATCAACAGATGCCATTAATATTGTTTTATATTGCACTTAATTAATATGAAGTAGTTTCCAGTCGGAGTAAGTTATGCTATTTTCAGTTATCAATGTTATGAGCTGTAGATATAGACACCAAGAAGCTATGCTAATGTCGTTTCGTAGTCAGATTCCATGTATGTTGAGTGATTTACAACTAAAATGCACCAGATTGTCGTGAGAAGTATATCGTGCATTTGTTGGTCTGTAAAACTCAGTTCCTGGATATGGTGCCTTGTTATTATACATTTTGGTTACCTGAAAATTGTTATTGTAGGTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATGGAGAAGAAACAGTGTTGTTGTAGTCTCTCTTTTCTTCTCTCTCCAAAATGTGCTTCATGGGATTGTTTCGCTTGGAGAGAAGGATATGTGGATGGAGAGGTTTTAGGTAGACAACAACAATAGAGTTGTTATGCAATACGAATACGAGCTGTTGTATTATAAGTTACAAACACATGAATTTTATTGTAAACAATTTAGAGTTATCAATTCTTTCATATATTCTTGTAATCAATTGAATTTTGATGATACACCCGTGGATGTGTTAGATTAAACATTTCTTTTTGTAATTTCAAGCAAATTGTACTTGAATGGTAATTCATTTCATATATCTTCTTCTTTATTC</genome_strand>
        <mrna_strand>CATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAG................................................................................TTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAG.............................................................................................GCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATGGAGAAGAAACAGTGTTGTTGTAGTCTCTCTTTTCTTCTCTCTCCAAAATGTGCTTCATGGGATTGTTTCGCTTGGAGAGAAGGATATGTGGATGGAGAGGTTTTAGGTAGACAACAACAATAGAGTTGTTATGCAATACGAATACGAGCTGTTGTATTATAAGTTACAAACACATGAATTTTATTGTAAACAATTTAGAGTTATCAATTCTTTCATATATTCTTGTAATCAATTGAATTTTGATGATACACCCGTGGATGTGTTAGATTAAACATTTCTTTTTGTAATTTCAAGCAAATTGTACTTGAATGGTAATTCATTTCATATATCTTCTTCTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243406" ref_strand="+" ref_description="SGN-E243406 [cLED-34-I5]">
      <seq>catacactgaccgtaaactttcttcttgggatttctgttgttttcatttcaatgcatcagttcttttcacctctttcaaaagttaaagatgatcaacaaaacgggacagtggagttgattgacgtccgggagaaccatagccctaaagattcatcctttgtaaatatggcagcaggagcaaatgaggaggcaagtcatcgagtaggacctgatgaaaggcagccacttcttccaagatgaagctacttgaactgtcatttgtagcagcagatattgtggtggagagcatttacagtcattcagtgtaatatggagaagaaacagtgttgttgtagtctctcttttcttctctctccaaaatgtgcttcatgggattgtttcgcttggagagaaggatatgtggatggagaggttttaggtagacaacaacaatagagttgttatgcaatacgaatacgagctgttgtattataagttacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="66213" stop="63377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65913" g_stop="65854" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65853" i_stop="65774" i_length="80">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65773" g_stop="65694" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="140" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65693" i_stop="64721" i_length="973">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64720" g_stop="64672" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="189" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64671" i_stop="64579" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64578" g_stop="64515" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="253" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64514" i_stop="63906" i_length="609">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63905" g_stop="63677" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="482" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E243406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65913" e_stop="65854"/>
          <exon e_start="65773" e_stop="65694"/>
          <exon e_start="64720" e_stop="64672"/>
          <exon e_start="64578" e_stop="64515"/>
          <exon e_start="63905" e_stop="63677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAGGTATTAAAATTGAGAGAGTTCTCCCTCTGGTATTTTCTGTTTTTTCTCTTGGGGCTGATCATTTGATTTTGATACTTCAGTTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAGGTATTTACTTGTTTAGTGTAAAGCAAAACTATGTCTCAGCCCCAAGTTAGTACTTGTTTTGTGTAAAGTAAAACTATATCTCAGCCCCAAGTTATATTTCCTTGTCAGCTACTGTTCTTAGGATACTGCTTTCTGTAAACTAATTTAGTTTTTTATATATGCTGAGAATGTGATGGAAAGCAGGATTCTGATGGCTTGCTCCCGGTACATCCATTCATTGAAAATGATTTGTGTCTGCTGAATGAGTAACACGATAATCCAACTATATAGCCAACTTTTCTTGTAGCAGATGTAGTTCTGCATGTAATTCAGCTTCACAAATTTCTCATGGCTGTGACTTTTATCATGTCATTTAAGTTTATATCGTATCATTGGATTACTCTTGTCTTTATTTATGTATTTCAAAGTGTCAAGGTCCAGATGTAATCAGTTTAGAAAATGTGTGAATTTATTGCTTTCCTGCATAGCTGATGGGTTGCTTCTATTTCTTTTGTTTCTATTTATGAAAATAGTACCTCCTTGTCGCTTGATATGATGAATGCATGCCTTTTTTCTTAAAATAATATTTAAAAGATAAGTTACAAGTTATTGGCATAAGGTCCTTTGCTGTGCAAGATAAATACTAGTTTCAATTACTAAGACAACAAGTCATACTTACTATTGGGTGATGATTGATATTAGCCATACTATGTACAGAAGCATTTAATAAGTTCTTTCTTGATGCTGGTAAATACTTCGTGAGACCTTAATTGTGCAAGTTTCTTTAATTCCTTGCTGTTTTCCAACTATAACATCAAATCTATTTATTGAAAAATGGATCTGAAATAAATGCTAATCTTTTAAGGTGTGTATATCATAGAGGTGCATCTTCACTCCCTTCACCCGTCCTTTTGACCCCCCACCCCACCCCCACCCCTCACCCCAAGTTTAAAAAGCTGTATCTGTTAATACTTCCCTCTTGTATTGTTTTCAGCCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAGGTATGGATCTTTTCTTCAGAAATTTTTAGATACAAAGTTTTTGCTGTATTTCCTACTTAAACTTGGATTGATTTCATGTTAATTCTTTTCCAGGCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACTGTAAGTGTGCTAAAGTTTCTATACTTTCTGATGATCTGATCCAAGTTATTAACTTGGATACACATAAATTAAGACAATGTTCAAACTTTTTATGGGTTATGGATATGTCTCTTGGTTACACTTACTCAAGGGAAACATGTGGGAGGACAAAAAAGAAGACCAGGAGAGTTTGGTTGGCACCTTGATCATCTAATGGGATTGTATATCATGTCCTGTTTCTCTTTTTATTTTGATATGTATAAAAAGAACTAATCAACAACAACATATACCCACACAGCGGAGTCTGTTCTAGAAGAATAAACAATTTCACCATCAACAGATGCCATTAATATTGTTTTATATTGCACTTAATTAATATGAAGTAGTTTCCAGTCGGAGTAAGTTATGCTATTTTCAGTTATCAATGTTATGAGCTGTAGATATAGACACCAAGAAGCTATGCTAATGTCGTTTCGTAGTCAGATTCCATGTATGTTGAGTGATTTACAACTAAAATGCACCAGATTGTCGTGAGAAGTATATCGTGCATTTGTTGGTCTGTAAAACTCAGTTCCTGGATATGGTGCCTTGTTATTATACATTTTGGTTACCTGAAAATTGTTATTGTAGGTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATGGAGAAGAAACAGTGTTGTTGTAGTCTCTCTTTTCTTCTCTCTCCAAAATGTGCTTCATGGGATTGTTTCGCTTGGAGAGAAGGATATGTGGATGGAGAGGTTTTAGGTAGACAACAACAATAGAGTTGTTATGCAATACGAATACGAGCTGTTGTATTATAAGTTACAAA</genome_strand>
        <mrna_strand>CATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAG................................................................................TTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAG.............................................................................................GCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATGGAGAAGAAACAGTGTTGTTGTAGTCTCTCTTTTCTTCTCTCTCCAAAATGTGCTTCATGGGATTGTTTCGCTTGGAGAGAAGGATATGTGGATGGAGAGGTTTTAGGTAGACAACAACAATAGAGTTGTTATGCAATACGAATACGAGCTGTTGTATTATAAGTTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236356" ref_strand="+" ref_description="SGN-E236356 [cLED-13-K19]">
      <seq>catacactgaccgtaaactttcttcttgggatttctgttgttttcatttcaatgcatcagttcttttcacctctttcaaaagttaaagatgatcaacaaaacgggacagtggagttgattgacgtccgggagaaccatagccctaaagattcatcctttgtaaatatggcagcaggagcaaatgaggaggcaagtcatcgagtaggacctgatgaaaggcagccacttcttccaagatgaagctacttgaactgtcatttgtagcagcagatattgtggtggagagcatttacagtcattcagtgtaatattggagaagaaacagtgttgttgnagtctctcttttcttctctctccaaaatgtgcttcatgggattgtttcgcttggagagaaggatatgtggatggagaggttttaggtagacaacaacaatagagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="66213" stop="63420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65913" g_stop="65854" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65853" i_stop="65774" i_length="80">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65773" g_stop="65694" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="140" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65693" i_stop="64721" i_length="973">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64720" g_stop="64672" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="189" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64671" i_stop="64579" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64578" g_stop="64515" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="253" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64514" i_stop="63906" i_length="609">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63905" g_stop="63720" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="440" r_length="187" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E236356" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65913" e_stop="65854"/>
          <exon e_start="65773" e_stop="65694"/>
          <exon e_start="64720" e_stop="64672"/>
          <exon e_start="64578" e_stop="64515"/>
          <exon e_start="63905" e_stop="63720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAGGTATTAAAATTGAGAGAGTTCTCCCTCTGGTATTTTCTGTTTTTTCTCTTGGGGCTGATCATTTGATTTTGATACTTCAGTTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAGGTATTTACTTGTTTAGTGTAAAGCAAAACTATGTCTCAGCCCCAAGTTAGTACTTGTTTTGTGTAAAGTAAAACTATATCTCAGCCCCAAGTTATATTTCCTTGTCAGCTACTGTTCTTAGGATACTGCTTTCTGTAAACTAATTTAGTTTTTTATATATGCTGAGAATGTGATGGAAAGCAGGATTCTGATGGCTTGCTCCCGGTACATCCATTCATTGAAAATGATTTGTGTCTGCTGAATGAGTAACACGATAATCCAACTATATAGCCAACTTTTCTTGTAGCAGATGTAGTTCTGCATGTAATTCAGCTTCACAAATTTCTCATGGCTGTGACTTTTATCATGTCATTTAAGTTTATATCGTATCATTGGATTACTCTTGTCTTTATTTATGTATTTCAAAGTGTCAAGGTCCAGATGTAATCAGTTTAGAAAATGTGTGAATTTATTGCTTTCCTGCATAGCTGATGGGTTGCTTCTATTTCTTTTGTTTCTATTTATGAAAATAGTACCTCCTTGTCGCTTGATATGATGAATGCATGCCTTTTTTCTTAAAATAATATTTAAAAGATAAGTTACAAGTTATTGGCATAAGGTCCTTTGCTGTGCAAGATAAATACTAGTTTCAATTACTAAGACAACAAGTCATACTTACTATTGGGTGATGATTGATATTAGCCATACTATGTACAGAAGCATTTAATAAGTTCTTTCTTGATGCTGGTAAATACTTCGTGAGACCTTAATTGTGCAAGTTTCTTTAATTCCTTGCTGTTTTCCAACTATAACATCAAATCTATTTATTGAAAAATGGATCTGAAATAAATGCTAATCTTTTAAGGTGTGTATATCATAGAGGTGCATCTTCACTCCCTTCACCCGTCCTTTTGACCCCCCACCCCACCCCCACCCCTCACCCCAAGTTTAAAAAGCTGTATCTGTTAATACTTCCCTCTTGTATTGTTTTCAGCCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAGGTATGGATCTTTTCTTCAGAAATTTTTAGATACAAAGTTTTTGCTGTATTTCCTACTTAAACTTGGATTGATTTCATGTTAATTCTTTTCCAGGCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACTGTAAGTGTGCTAAAGTTTCTATACTTTCTGATGATCTGATCCAAGTTATTAACTTGGATACACATAAATTAAGACAATGTTCAAACTTTTTATGGGTTATGGATATGTCTCTTGGTTACACTTACTCAAGGGAAACATGTGGGAGGACAAAAAAGAAGACCAGGAGAGTTTGGTTGGCACCTTGATCATCTAATGGGATTGTATATCATGTCCTGTTTCTCTTTTTATTTTGATATGTATAAAAAGAACTAATCAACAACAACATATACCCACACAGCGGAGTCTGTTCTAGAAGAATAAACAATTTCACCATCAACAGATGCCATTAATATTGTTTTATATTGCACTTAATTAATATGAAGTAGTTTCCAGTCGGAGTAAGTTATGCTATTTTCAGTTATCAATGTTATGAGCTGTAGATATAGACACCAAGAAGCTATGCTAATGTCGTTTCGTAGTCAGATTCCATGTATGTTGAGTGATTTACAACTAAAATGCACCAGATTGTCGTGAGAAGTATATCGTGCATTTGTTGGTCTGTAAAACTCAGTTCCTGGATATGGTGCCTTGTTATTATACATTTTGGTTACCTGAAAATTGTTATTGTAGGTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATA-TGGAGAAGAAACAGTGTTGTTGTAGTCTCTCTTTTCTTCTCTCTCCAAAATGTGCTTCATGGGATTGTTTCGCTTGGAGAGAAGGATATGTGGATGGAGAGGTTTTAGGTAGACAACAACAATAGAGTT</genome_strand>
        <mrna_strand>CATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAG................................................................................TTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAG.............................................................................................GCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATTGGAGAAGAAACAGTGTTGTTGNAGTCTCTCTTTTCTTCTCTCTCCAAAATGTGCTTCATGGGATTGTTTCGCTTGGAGAGAAGGATATGTGGATGGAGAGGTTTTAGGTAGACAACAACAATAGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325283" ref_strand="+" ref_description="SGN-E325283 [cTOC-1-D21]">
      <seq>aggggcattcgaaggcaaccatgcttctaattgttaacaatgcagcgcaaggaattctgtcgtccttttttttcaaatatgctgatacaattctgaagaagtattcttcgaccgttgcaacaatatttacaggcatagcatctgctctgctgtttggtcatacactgaccgtaaactttcttcttgggatttctgttgttttcatttcaatgcatcagttcttttcacctctttcaaaagttaaagatgatcaacaaaacgggacagtggagttgattgacgtccgggagaaccatagccctaaagattcatcctttgtaaatatggcagcaggagcaaatgaggaggcaagtcatcgagtaggacctgatgaaaggcagccacttcttccaagatgaagctacttgaactgtcatttgtagcagcagatattgtggtggagagcatttacagtcattcagtgtaatatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="66540" stop="63544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66240" g_stop="66157" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66156" i_stop="65988" i_length="169">
            <donor d_prob="0.604" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65987" g_stop="65854" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="218" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65853" i_stop="65774" i_length="80">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65773" g_stop="65694" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="298" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65693" i_stop="64721" i_length="973">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64720" g_stop="64672" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="347" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64671" i_stop="64579" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64578" g_stop="64515" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="411" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64514" i_stop="63906" i_length="609">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63905" g_stop="63844" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="473" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E325283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66240" e_stop="66157"/>
          <exon e_start="65987" e_stop="65854"/>
          <exon e_start="65773" e_stop="65694"/>
          <exon e_start="64720" e_stop="64672"/>
          <exon e_start="64578" e_stop="64515"/>
          <exon e_start="63905" e_stop="63844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGCATTCGAAGGCAACCATGCTTCTAATTGTTAACAATGCAGCGCAAGGAATTCTGTCGTCCTTTTTTTTCAAATATGCTGGTGAGATCATTACTCAGTTTGCTCCACCTTCTTTTCGCTCTTTATATCCTCTATTAATGGGGGTTGTTATATGTTTCTACTTGGTGCTTCTGTGTAACTATCTCACTTTTAACTAGAAATTTTTTTCCTTTATGGTATTCTGCTGTATAACACAATTTGTTTGTACCAGATACAATTCTGAAGAAGTATTCTTCGACCGTTGCAACAATATTTACAGGCATAGCATCTGCTCTGCTGTTTGGTCATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAGGTATTAAAATTGAGAGAGTTCTCCCTCTGGTATTTTCTGTTTTTTCTCTTGGGGCTGATCATTTGATTTTGATACTTCAGTTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAGGTATTTACTTGTTTAGTGTAAAGCAAAACTATGTCTCAGCCCCAAGTTAGTACTTGTTTTGTGTAAAGTAAAACTATATCTCAGCCCCAAGTTATATTTCCTTGTCAGCTACTGTTCTTAGGATACTGCTTTCTGTAAACTAATTTAGTTTTTTATATATGCTGAGAATGTGATGGAAAGCAGGATTCTGATGGCTTGCTCCCGGTACATCCATTCATTGAAAATGATTTGTGTCTGCTGAATGAGTAACACGATAATCCAACTATATAGCCAACTTTTCTTGTAGCAGATGTAGTTCTGCATGTAATTCAGCTTCACAAATTTCTCATGGCTGTGACTTTTATCATGTCATTTAAGTTTATATCGTATCATTGGATTACTCTTGTCTTTATTTATGTATTTCAAAGTGTCAAGGTCCAGATGTAATCAGTTTAGAAAATGTGTGAATTTATTGCTTTCCTGCATAGCTGATGGGTTGCTTCTATTTCTTTTGTTTCTATTTATGAAAATAGTACCTCCTTGTCGCTTGATATGATGAATGCATGCCTTTTTTCTTAAAATAATATTTAAAAGATAAGTTACAAGTTATTGGCATAAGGTCCTTTGCTGTGCAAGATAAATACTAGTTTCAATTACTAAGACAACAAGTCATACTTACTATTGGGTGATGATTGATATTAGCCATACTATGTACAGAAGCATTTAATAAGTTCTTTCTTGATGCTGGTAAATACTTCGTGAGACCTTAATTGTGCAAGTTTCTTTAATTCCTTGCTGTTTTCCAACTATAACATCAAATCTATTTATTGAAAAATGGATCTGAAATAAATGCTAATCTTTTAAGGTGTGTATATCATAGAGGTGCATCTTCACTCCCTTCACCCGTCCTTTTGACCCCCCACCCCACCCCCACCCCTCACCCCAAGTTTAAAAAGCTGTATCTGTTAATACTTCCCTCTTGTATTGTTTTCAGCCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAGGTATGGATCTTTTCTTCAGAAATTTTTAGATACAAAGTTTTTGCTGTATTTCCTACTTAAACTTGGATTGATTTCATGTTAATTCTTTTCCAGGCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACTGTAAGTGTGCTAAAGTTTCTATACTTTCTGATGATCTGATCCAAGTTATTAACTTGGATACACATAAATTAAGACAATGTTCAAACTTTTTATGGGTTATGGATATGTCTCTTGGTTACACTTACTCAAGGGAAACATGTGGGAGGACAAAAAAGAAGACCAGGAGAGTTTGGTTGGCACCTTGATCATCTAATGGGATTGTATATCATGTCCTGTTTCTCTTTTTATTTTGATATGTATAAAAAGAACTAATCAACAACAACATATACCCACACAGCGGAGTCTGTTCTAGAAGAATAAACAATTTCACCATCAACAGATGCCATTAATATTGTTTTATATTGCACTTAATTAATATGAAGTAGTTTCCAGTCGGAGTAAGTTATGCTATTTTCAGTTATCAATGTTATGAGCTGTAGATATAGACACCAAGAAGCTATGCTAATGTCGTTTCGTAGTCAGATTCCATGTATGTTGAGTGATTTACAACTAAAATGCACCAGATTGTCGTGAGAAGTATATCGTGCATTTGTTGGTCTGTAAAACTCAGTTCCTGGATATGGTGCCTTGTTATTATACATTTTGGTTACCTGAAAATTGTTATTGTAGGTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATGGAG</genome_strand>
        <mrna_strand>AGGGGCATTCGAAGGCAACCATGCTTCTAATTGTTAACAATGCAGCGCAAGGAATTCTGTCGTCCTTTTTTTTCAAATATGCTG.........................................................................................................................................................................ATACAATTCTGAAGAAGTATTCTTCGACCGTTGCAACAATATTTACAGGCATAGCATCTGCTCTGCTGTTTGGTCATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAG................................................................................TTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAG.............................................................................................GCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258747" ref_strand="+" ref_description="SGN-E258747 [cLEG-50-M9]">
      <seq>acacagaagcaagatttcatcaaagcaacgtgctctcaatgtcctattggttgtaggagattgtatgctggttggtttacagcctgttttggtatttatgtcgaaagtggatggaaaattcaagtttagtcccgtaagtgtcaacttcttgacagaggcgacaaaagtcgtctttgcaataataatgcttttaatccaggccaggcatcaaaaggttggagaaaagccacttctttcaatatccacatttgtccaggttttggttattgcagtgctgttgaaatttatcatgaaaaggcgattttccgtaattcagtgggaggctcttgctttgctgctaattgggataagcattaatcaacttcgatcccttcctgaaggcaccacttctttggctcttccagttaccacaattgcctacatctatacactgatttttgtaactgtgccttctatggcctcagtattcaatgagtatgctttgaagagtcaatatgacactagcatatatctccagaacttatttctctatggttatggtgctatattcaactttctagccattcttgggattgctgtatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="77075" stop="66564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76775" g_stop="76694" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76357" g_stop="76241" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="199" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76157" g_stop="76101" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="256" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76100" i_stop="68114" i_length="7987">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68113" g_stop="68054" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="316" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67917" g_stop="67795" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="439" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67794" i_stop="67658" i_length="137">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67657" g_stop="67580" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="517" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67579" i_stop="66932" i_length="648">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66931" g_stop="66864" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="585" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E258747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76775" e_stop="76694"/>
          <exon e_start="76357" e_stop="76241"/>
          <exon e_start="76157" e_stop="76101"/>
          <exon e_start="68113" e_stop="68054"/>
          <exon e_start="67917" e_stop="67795"/>
          <exon e_start="67657" e_stop="67580"/>
          <exon e_start="66931" e_stop="66864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAGGTAGCGGTCCTTTTCAAATGTTCTAATTGTTTATTCGTATTCTTCTCAGTTATCAGAAAAAAAGTTCTTAATTTTTGCATGCAAATGATAATATTCTACCAGTAAAGTGTACACTCACTAAGCTTCTTGATTTTGTGTGGATCGGTCTCTTTCCATAACAATCACCATTGATTTTTTTTTTAATTTAAAAGTAGCTTCTGCTTTTCTATCGAATATAGTTAATTATAGCTGTCACCTCATATCTTTTACCACTTGTTTCCATCAGCAAAACATTTAAATTTGCTGCTTAAAAATGAGAAAGACTTGTCTCACCCGGTATTTTATCCCCCTTTTCAGCCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAGGTACACTATTTTTATGTTTTTTGTTTACTTGATTTTTTTTTCGATAGTTCAATTTCATGTTTCTTGTTGGAATGTTTCTGCAGGCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAGGTAAAATGTCATTGGTGTGAGTGTTGTAACTGCTCTTAGTTCTCCTGGGTGGGTTGAAACCTAGTTTATTGCTCATCATGTCCTTGTAATAGCAAGATTCTTGCATATGTTCTTTATGATAATTTAAAGTTTGTAAGTGATGTAATATCTGAGGAGCCAGTCTCTAAATTGAGTCCTCTTCTTACATGATTAACCTATATTCATGTATGACACTAAGGATTTGAAAGATGCCTACCCTGGATGACTGTCTTGGACAAGAGTATTGTTGCTGTTGGACGCAGAAAGCTTTAAACAGCTTTCCGAAGTATCAATTTAATTTCTGTGTAAGATCCTGCACAGAAGAAAGATATCATGAGTTAAATCCCACTGGAAACAAAATCATTAGGTGGTTTCTTCCCATTGTCTGCCAAAGTTGTTACTGATGGGTGGTGGGAGGTGGCAGGTATCCCGTGGAACTAGTCGAGGTGTGCACAAGCTGGCCCAGACACCACAATTTATTTTCCCTAAAAAATAGATATAATGAGTTGTATAAAAGGGAAAAGTTTTACCACACCTCTTATGGTGTTCGCCAAATCTCCCAGGTGGGGAACTACACATACAAGAAGGAAATTTGAGCTTGATGCAAATGGATGGGTGTCAAGAAAGATAGGATGTTATGGTTTAAGGGAACAGCCATCGTGAAGATCTGCTAATGATATTATGCAGTAAAGAAAAGGTGCAAGCTGGACATTGCACTTGCTTGGGGCATGCTTCGTATAGTTGATATTGGATAAAAGAACTAAATGCTTCTCTTCACTGGTATAGTCTGCTGAAAAGAAAGTCCAAGAACTACTGCAATTCCTCTTGTGTATATCAGGACACCTTCATTTATTCATTCCACAGACGAGTCAATATGTTGCTGTGAGTTCTACCTTTCTTCATATCAAGATCCAGGCTCTAAAGTATGAGTATTATCTCCATAAGAGTGAAACAGGAATTAACATAAGTGGAGAATAATAGCAATCCTGCTCTCTTCTTTTCGGTTTCTGTTTGTAAAGTTCTTCATCAGCATTTTTAGATGCTGATGTTTTCGGAATGAATGCAAGTTACCTTATGAAAAAGAAAACATAAGTCGAGAATATGATTATATTGAGTTGATCCAAAATGTGGAGAATAAGGATGAAGACTCTGAGTTGATCCGGAGATACAGAAACTTTTATAGTATTGTCAAAGAATAGTTTTATTGGGACAAATGCAAAAACAGGCTGAACATTGAGATAATGTGAAACGACCTTGGAAATTAAAACCTTCTCATATATCTACATACTGTTCGAGCTGCAAGTTTTGCCGTGTCACGACCCAATTTCTCGAGTCATGATGGCACCTACTATAACCCACCAGTAGGTAACCCGACCCGTAACCCGGAACAACGCACAATGGGTCTGAGGGTAGAAACTAAACAAGAGTAGGCAAAATTTACTACTCCCTCCGTTTAAAAACGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCTTTCCTTTTTGGCAACACTTTATCTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTATATGGCATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAGAAAGTCTTTTTTTTATTCTTAAACTCCGTTCCAAGTCAAACTAGGCTATCATTTTTGAAACGGAGGGAGTATAACAATATAAACAGGCGGAAGCAAACCAAAACATATATACAAATAAGGATCCCTCCCAGAACCTGGAAGTCACTAGTACAGATCTACCAACAAAACGAGTACAAGTCCCAAAAGTGAACCACTGAAACTAGACTGTCTCGAAAGGTAAAAGACAAGTCTATATATATACAGATGGAGACTGAAATAGTACAGAATGTCGTGTGCTCACCCTCGTCTCCAGATCAGACTGCTCCAAACTCGATCAACATTGGCTACTCGTGCTCGAACCTACATCACGAAAATAGATGCAAAGCATAGCATGAGTACCAAACACTAGGTACCCAGTATGCATCATAGGCTGACTAAACTTGAAAAGTAAAGCAATATGAAAAGAAGGAATAACACAACTAGAGGTCAAGAACGAAAGTCTAAGTAACAATGGAATGCACACGAGTGTAGAAAGAACTAACTAAAGTAATATATAAGCTAACTACACCTAACTGGACCCCCCATAAGCCCAGAAGGCACACTTGTGCGCAAGTTTAAATAAAAACTCAAACGGACCCTCATTAGCTCGACGAGTACAGAGAATAACTATAACTAAGGAGAATAGAACCCAAGGCCAAAGAACATCGAACTAGATGCTCAAAACCAATAAGTAGAATCTGAGGGTACGGAGGTCCGGACACTCACCAAAATTACACAAGTAGCCAATCACAAATATAAGTAACTGAGTCCGTACCTCTAACCGGATGCTCCGCATAAGTATGCGGATGGTCGAGGCCAGACTTTGAACCGGATGCTCTTCCAAAATTATCAATGAAGTCAAGGTCGAGCCTTAAATCCGGAAGCCCGACAAAGGTGTCAACTTTGAATTGCGGAGCGGAACTCATTGTTACTGATGTAGCTCGTGAAGCCGTAACATCAATGAAGTAAGGATAACTATCGCCGGAGCGAACTCCTAGTCTAGCTAAGGCCCAAACTATCAGCCTCTAGTCTGCTACACCAGTCTACAAGGATTTAAGCCGACCGAGCGAGGTCGGGGCAAAACTAAGTCCTGCCGGTTTGCATTTCTAAGGCAAGCTCTAGTCAAACCTAAACGAAGACCCAACATACTTCCAATTAAACCGTACTCCAACATACAAAGCATACAAGTACTCCACATAGCAAAGAAGGTCAATTAATAACATAAAGCATGCTCACAGTTACTCGATAGTTCTCAGAAATAGGTTGAAAACATGATTTTTAACACTTATGCATGATTCAATAACTACCCAACCCAAATCTCAACTAATCAACATGCATTCACATGTTCGAGTTCAATCTAAGAGAAGGAAATCGTAGCCTACCTGTAGGCAGATCACGCCGCGCTCCAAAAATCACTTCTTCGGAGCTTTCCCTTTCCGAATGGCCTTGAAAAGTTGACACACTATAAAAAATAGTCACAATGTTATTACGGTCGTTTAGACACTAAAATCGCAAGAAACTGAGACGGCCTAATTTCGCGGTTAAAACGGGAAAAGTGGGACCTGCATTGAAAATTCCAGGATTAACCCCAAATATAGGTCCTAAACAGCTCTCGGAACTTGTGTTCCAAAGTGGAACACAATTCGGGGCTTGAAACATTCCCAACACGAACATGCAACCAAAAACCCAATAATACGCTAAAATTCAACAACAATGGCAGCAACTATTTACAAGAATTTACCAGAAACGAAGGTTCAACTGCTAAAACCAATCACACCACGACGATCCTCACGAAATCCCCCACAATATACGCTCTTGAATCACCAGATTCGGACCTAAAATGGCCAAGAAATCTTCTTCTAAAAGTTTCCCAAAAGTTGAACTCGAAAATGAGCTATGACAGCAGTTAAAACACAATTTTTTACCTTTAACAAGACTTCAAATGTGAATTCTGTCCACGCCAACACGTTCTCCTCGAAAATTCACTCAAGTTAACCTCCTGAATCGCCCAAATCGGACCTTTATAGCTCAAGGTATCACACTTTTAAGAAGAAGGCTTAAGCTGAGTTGGGGCTTTAATAAAAGACGAAACTGGTCGCTATTAACCCCAAAATTCTGGTCCCTAAAAGGGCTGCACCAGATTTCAGCTTTGGCTAATTTCTTCAAAGTCTCCGACGGTGTGCTCCGAATTCGTTCGGAACCTGATAAAAATAAAACAGATATCTGCCCTACTAAATTCGACATTCCGGACTCAACGGCGCAGTCAAAATTTCCATCAGAGGTCATCTCGATAAAAAGTGGGTCCCACTTCCATCGTCCATTTTAAGTCAAAAAACACACAAGGGCTCGAAAAAATATCGGCAACCTCAGGACACAAAAGAAGGGTCATACTAGACCAAACTCGACATTCCGGAAACCTCAGAATGTTGACTAAAGTCAAACTTAGCCTTAAACTTAAAGTTAAAACGCCTAATCGCACCAACTAGCCTAAGATGACCCTTTCGGAGCTGATGAAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTTATAAGCTCCAAAAACACTAAAACTCACACAATAACCAAACGAACGACCAGCTGACCAAACTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGACGCACAAAAGACAAAACACAGAAATGACCAAGAGGGTCATTACATTACCTTTGATCGACCTTGGAAGTTGGACCCTATTCATATTTCTATGTAGTGTCAAGCTGCCAAGTTTTGTTGTAGATGAGTTTTGTCTTCTGTATTGACAATTCAAATTTGCACTTGGCTGGAAAAGGAAAACTTCAACCTTTTTACCTCGCTTTGCTCCATTTCTTTCAGTTGTCAGTTTGTCTGATGTGAAATGGAAACTCCATTTAGGTGACTAATTGATGCTTGCAGATAACTGGTTTTCCTCTTTCTTAAGCTTCTATGCGACCTAAGGTCCATAAACAACTAAACCGTGTCAGTGAGGGGCAGAGAGGAAAAAATAGGAAAAAATGTATGATATTTATTGAAAGATCTCTAGTTGATGTCACTTGGCAAAAAATAAGAATGGAGCTCCAGTTGTTGCTTTTCACAAGTTGTATATATGGTTGGCAACTTGATAAATGCCAGTAAATGGCTCTGCTGAGTCATTGAAACAATTTATACATACTTTGACACCTGCTTGGTGTCTAGTTATGAAAATTTTGACTTACCAAAAAAGATTCTAAGACTTCTGATACCTTGTTGCTTGCTGACTGTGTGAGAGCTTCACTTTTCTTTGTTGTACTGTCAGTTCCATTTTAAAGTTGCCTAATTCTTCTCTGCAATCCTGGTTAAATTTTTTGTCCTTCACCATTCTATTGAACCACTACTTCAGCTTCTTAGAGAATTGAAGTTGTCAGCCTTTGTATAGATTTCAGATTCTATGTTGACTACTTGATGGCTGTTGTGTGTGACTGATTGTTTCAGTCTTGACATGCATGCGTTAGTTAGTTTCCATGTATTGTTCTGCAACCATGCTACCAAGTCATTCAACAGGCTTTCTATTAATTGGTAATTTACATCCATTTTTTTTCTTCAGGCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAGGTACTATTTGTTGAGCTTTTCTGTGCTTGTTAGTTCTCTGAGTAATTCCCATAGTTTTGTTATTTCATCCAGCATCTTACATTTTGCCTCTGCATTTTTTCTTGTACTGTACAGAGCTACAAAGTTGGAACATTGTCTTGCTTCATCCATGGTATTCATAGAGAATTACAGATCTTCCATGAGAAAAGTTGCTCTCAAACTTTACCTGTTTGTCTCAAAACTTGGGATATATCCAGTACTAGTTTCTAGGTTACATATTGACTTCTGAGCTAGGCAGTTGGATTTATACCTCAAACTAAGAAATCTGAATGCTGCTTGAGTACATAGAGTGATGATTCCATAGAGATTGGTATTTGTTAATAACTAATAACAAACTTCTATCTCTGGCGTCAATGGACTATTGTGGTTTTGCAAGAATGCTTCTGTGCACGATATTTTCTGCTTGCTGTCACTTTGTCCTTAGCACGACTAAGAATTCTAAATAAGGGAGTCTGCTGACTAACCAATTACCTTTGTTAGATGCCCTACTGGGCGAAGGTCTGGCATGTATAGACAAGTAGACATGCCATATCATGGTGCTGTAGAAGACAAGTGATGTCTTGACTCTTCCCTCTCACGGCTTAGATGTAAATGAAGAATTAAATTCATTTTTCGTAACTCTGTATCAGTTTATGGGTTCTTTTCTATACATCCCCATTCACTTTATCAGTTATTGAGACACCTCTATGAAACTTGATTCATGTTTGGCTTGGAGTCTACTGAGTCATGAATACATATTTGATTGACTGTTCTACTACTATTAAGATCTTTTCACTGTCCAATATCACATTTAAGTCACAGCTTGCTAGCTACCAGGCTATACACTGGATTTTCTTTTACCACAGTTCTCCTTTTTCTCACATTTTCCCTCAAATATTTTGTACAGTTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAGGTAACTGCTATATTTGAACACTTCTACAACGTATTATCTGATTGTGTTTGCTGCTTTTGCCGATTTTCTGCTGCATTCTTCAATTACTTTATTGACTCTGGCTCCTCTTCTTTCTTTTCATCATCTGCTACATTTTGATTTTTTGTGGGATAGAGTTACCTGGTCCTGTATTGGTGGGAGGTTGTAGGAACTCTATGGAATTAGTGGAGGTGCGCTAGATCTGGCCAGACACCACATTTGTAAAAATACAATGTCGCTAAATTCGGTTAGCACAATCCAACTTCATCCCTGTATTCGCCATCTCTGGATGAAACCTAAATTTGGATTAACTTCCATACGGTACGAATATCTCCCCAGATCTTTTGGGATTGAAGCGTTACTGTTGTTGCCGTTGTTTCTTGATCCAAATCTGTCTGGATTAGATTCCACAATTTTTGGTTCAGGACTAGACTGAAATTGCCCCCATCTTAATCTGTATTATGGAAGCTGCCAGTGCATAGAACTATTTTCTTTTTGAAATTTCAAGTAATGTGGATTGAAGTCCATGAAGTACTCTTTGTTAATAGCTTGCAGTCTTTAGCTGGTGCTTAATCTAATGAAGGAAGTTGTTTTAGCATCTTTCTAGAATGTCCAAAGTTTTCTGTTAACATCCTTCTTACAGGGCAGAAAAAAAGGACTACTCTTTTTTGTTCACTTGTCTCTCTATTAACCTAAATCCAAATAGTTTTATTAAGGTGGTTATTTCTTTTCAGGAGCCTTAGATGTGCTAAGAACATGGCCCCTTGGATAAATGGGTATAGGCTTTAATTATTTGTGTGCTGGACGGAATTCCTACATGATAATTGATGTCACCTTTTCCCATTCCAGGGAGTGTTGAAAAGAAGTTCAATTCCATTAGAAGCCAGTTCCTTTGGGAAGGAAATGCTAACAGGAAAATTTTGATTTGACCAAATGGCATGAAAAAAAGACAATAAAGGAGGTGGATTGGGTGTTAAAAATTTTAAAGCATCATAACAAGAAGGGGTATTCCTTTGTGTAGTTCTTCTATGAAATTCTCAGGAATGTGCCGAACACCTTTTTATTCATTGTAATCATGCAAAGCAGATATGAATTCTGTTCCTAACTCAGAGTGATATCAGGTATGAATTAGGTGATGCCAAAGAATGTGAGTGATCTATTGAATTGTTGGCAAAATCAGAATGTCGGGAAAATGAAATGCAAATCTGGGAAATGATACCTCTTTGCATCTTTTGTACCCTTTGGTTGGAAAGGACTACACGATGTTTTGAGAATTGGGAGAATCATTTAGCTAGCGTTAAGAATAGTCGTCTTCTTAATCTTTACTTGTGGTGTTGGGTACGTATGGCAGAAGACTTAGATCAGTACATGGATTTTATAGAAGCTTTGAGAATGTAACAGTTGCAGTTGCGCTGTAGTTTGTATGCTTTTAGTACCTTCTTGGTACTTATCGGGAAAAAAATGTGGTTATTTCTTTTTCGATACCTGAGACTTTACATATCAGTTGATGATTTCTCAGTTTCGACATTATACACCAAAGGATATATTTCAGAATACTTTATTGAATATGATGCTATGGTAGAGCTTTTCTTTAATATTTGTTTCTTTGCTGTCAATGTGCAGGTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAGGTTAGTTGTTTCAAACTAGTAAATTAAGCTGGAGGTGCAATATTGATTGTAGGAGCAGGAAAGAGCAAGGCATCCTGTATAAATTCTTGCAGGATGGAAGTTGTATACCCATATAATAAGAGTTATTATGTTACAGTGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTTGTAAGTGATTCAAACAACCTAACAAGCTACTACTGATTCTATTTTGTTTGTTATTGGAGACGGCCTTAGTAAATACCTGGACATCATTTAAGATACTAGTTTATTACTGGCTAAAGGAGGGGTTTTCTTTTACACAGGTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAGGTATATTAATCATGGCTAATTATCATTTTTCTATTTCTGTATCATCAGAATGTTCTGTGGTTAGATTGGCTCATTATTTTCCACTGCTTTCTTTCCTGGGACAACTATTACTTTTGAATGGATGTATAACTTTTATGTTCCTATACTTGAGGCATTTATCAGTGCCAGTTTACTGCAATATTTGATTCTTAGAAGACTTGGCTCATTTAAGAAATGTCCAAGAACATTTGTCAACGGTAAATTCTGACTTCGAATGCCTTGTACAAGGGAACAAGGAAGATGTATCACAGTAATTTTATTAAGATTCAATATGAAGAGCAGGTCTCTCTTATGATAAAAATGTAACATTGTAATTTAGTTACATTTCCATATGAGAGTACTTGGTATGATGAACATATAAAGGATTTCTTTCAGTTTCACTGTTTGTGCTAGCTTTTTCCTTTCCTTATATTCTAATCCGGCTTGTACTAGGATCTTTATCCTAGAGCAGCATCTGTTGTCCAGTTATAGGACTTCAACTGATGCATGTCAGGTCTTGTCTCTGTAGCAACAGAGATTATGCTAATTTCTCCATTCGTAGAGGACGGTCGGGACTTCTATCAGCACTCTCTTCCTGAACCATCTGACATGTTACAATTTAATTCGCAGAACTTATTTCTCTATGGTTATGGTGCTATATTCAACTTTCTAGCCATTCTTGGGATTGCTGTATTTAA</genome_strand>
        <mrna_strand>ACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG...................................................................................GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG........................................................................................................................................TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTT.........................................................................................................................................GTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTATTTCTCTATGGTTATGGTGCTATATTCAACTTTCTAGCCATTCTTGGGATTGCTGTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551055" ref_strand="+" ref_description="SGN-E551055 [TUS-55-A13]">
      <seq>agatttcatcaaagcaacgtgctctcaatgtcctattggttgtaggagattgtatgctggttggtttacagcctgttttggtatttatgtccaaagtggatggaaaattcaagtttagtcccgtaagtgtcaacttcttgacagaggcgacaaaagtcgtctttgcaataataatgcttttaatccaggccaggcatcaaaaggttggagaaaagccacttctttcaatatccacatttgtccaggttttggttattgcagtgctgttgaaatttatcatgaaaaggcgattttccgtaattcagtgggaggctcttgctttgctgctaattgggataagcattaatcaacttcgatcccttcctgaaggcaccacttctttggctcttccagttaccacaattgcctacatctatacactgatttttgtaactgtgccttctatggcctcagtattcaatgagtatgctttgaagagtcaatatgacactagcatatatctccagaacttatttctctatggttatggtgctatattcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="77064" stop="66593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76764" g_stop="76694" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76357" g_stop="76241" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="188" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76157" g_stop="76101" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76100" i_stop="68114" i_length="7987">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68113" g_stop="68054" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="305" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67917" g_stop="67795" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="428" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67794" i_stop="67658" i_length="137">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67657" g_stop="67580" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="506" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67579" i_stop="66932" i_length="648">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66931" g_stop="66893" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="545" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E551055" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76764" e_stop="76694"/>
          <exon e_start="76357" e_stop="76241"/>
          <exon e_start="76157" e_stop="76101"/>
          <exon e_start="68113" e_stop="68054"/>
          <exon e_start="67917" e_stop="67795"/>
          <exon e_start="67657" e_stop="67580"/>
          <exon e_start="66931" e_stop="66893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAGGTAGCGGTCCTTTTCAAATGTTCTAATTGTTTATTCGTATTCTTCTCAGTTATCAGAAAAAAAGTTCTTAATTTTTGCATGCAAATGATAATATTCTACCAGTAAAGTGTACACTCACTAAGCTTCTTGATTTTGTGTGGATCGGTCTCTTTCCATAACAATCACCATTGATTTTTTTTTTAATTTAAAAGTAGCTTCTGCTTTTCTATCGAATATAGTTAATTATAGCTGTCACCTCATATCTTTTACCACTTGTTTCCATCAGCAAAACATTTAAATTTGCTGCTTAAAAATGAGAAAGACTTGTCTCACCCGGTATTTTATCCCCCTTTTCAGCCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAGGTACACTATTTTTATGTTTTTTGTTTACTTGATTTTTTTTTCGATAGTTCAATTTCATGTTTCTTGTTGGAATGTTTCTGCAGGCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAGGTAAAATGTCATTGGTGTGAGTGTTGTAACTGCTCTTAGTTCTCCTGGGTGGGTTGAAACCTAGTTTATTGCTCATCATGTCCTTGTAATAGCAAGATTCTTGCATATGTTCTTTATGATAATTTAAAGTTTGTAAGTGATGTAATATCTGAGGAGCCAGTCTCTAAATTGAGTCCTCTTCTTACATGATTAACCTATATTCATGTATGACACTAAGGATTTGAAAGATGCCTACCCTGGATGACTGTCTTGGACAAGAGTATTGTTGCTGTTGGACGCAGAAAGCTTTAAACAGCTTTCCGAAGTATCAATTTAATTTCTGTGTAAGATCCTGCACAGAAGAAAGATATCATGAGTTAAATCCCACTGGAAACAAAATCATTAGGTGGTTTCTTCCCATTGTCTGCCAAAGTTGTTACTGATGGGTGGTGGGAGGTGGCAGGTATCCCGTGGAACTAGTCGAGGTGTGCACAAGCTGGCCCAGACACCACAATTTATTTTCCCTAAAAAATAGATATAATGAGTTGTATAAAAGGGAAAAGTTTTACCACACCTCTTATGGTGTTCGCCAAATCTCCCAGGTGGGGAACTACACATACAAGAAGGAAATTTGAGCTTGATGCAAATGGATGGGTGTCAAGAAAGATAGGATGTTATGGTTTAAGGGAACAGCCATCGTGAAGATCTGCTAATGATATTATGCAGTAAAGAAAAGGTGCAAGCTGGACATTGCACTTGCTTGGGGCATGCTTCGTATAGTTGATATTGGATAAAAGAACTAAATGCTTCTCTTCACTGGTATAGTCTGCTGAAAAGAAAGTCCAAGAACTACTGCAATTCCTCTTGTGTATATCAGGACACCTTCATTTATTCATTCCACAGACGAGTCAATATGTTGCTGTGAGTTCTACCTTTCTTCATATCAAGATCCAGGCTCTAAAGTATGAGTATTATCTCCATAAGAGTGAAACAGGAATTAACATAAGTGGAGAATAATAGCAATCCTGCTCTCTTCTTTTCGGTTTCTGTTTGTAAAGTTCTTCATCAGCATTTTTAGATGCTGATGTTTTCGGAATGAATGCAAGTTACCTTATGAAAAAGAAAACATAAGTCGAGAATATGATTATATTGAGTTGATCCAAAATGTGGAGAATAAGGATGAAGACTCTGAGTTGATCCGGAGATACAGAAACTTTTATAGTATTGTCAAAGAATAGTTTTATTGGGACAAATGCAAAAACAGGCTGAACATTGAGATAATGTGAAACGACCTTGGAAATTAAAACCTTCTCATATATCTACATACTGTTCGAGCTGCAAGTTTTGCCGTGTCACGACCCAATTTCTCGAGTCATGATGGCACCTACTATAACCCACCAGTAGGTAACCCGACCCGTAACCCGGAACAACGCACAATGGGTCTGAGGGTAGAAACTAAACAAGAGTAGGCAAAATTTACTACTCCCTCCGTTTAAAAACGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCTTTCCTTTTTGGCAACACTTTATCTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTATATGGCATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAGAAAGTCTTTTTTTTATTCTTAAACTCCGTTCCAAGTCAAACTAGGCTATCATTTTTGAAACGGAGGGAGTATAACAATATAAACAGGCGGAAGCAAACCAAAACATATATACAAATAAGGATCCCTCCCAGAACCTGGAAGTCACTAGTACAGATCTACCAACAAAACGAGTACAAGTCCCAAAAGTGAACCACTGAAACTAGACTGTCTCGAAAGGTAAAAGACAAGTCTATATATATACAGATGGAGACTGAAATAGTACAGAATGTCGTGTGCTCACCCTCGTCTCCAGATCAGACTGCTCCAAACTCGATCAACATTGGCTACTCGTGCTCGAACCTACATCACGAAAATAGATGCAAAGCATAGCATGAGTACCAAACACTAGGTACCCAGTATGCATCATAGGCTGACTAAACTTGAAAAGTAAAGCAATATGAAAAGAAGGAATAACACAACTAGAGGTCAAGAACGAAAGTCTAAGTAACAATGGAATGCACACGAGTGTAGAAAGAACTAACTAAAGTAATATATAAGCTAACTACACCTAACTGGACCCCCCATAAGCCCAGAAGGCACACTTGTGCGCAAGTTTAAATAAAAACTCAAACGGACCCTCATTAGCTCGACGAGTACAGAGAATAACTATAACTAAGGAGAATAGAACCCAAGGCCAAAGAACATCGAACTAGATGCTCAAAACCAATAAGTAGAATCTGAGGGTACGGAGGTCCGGACACTCACCAAAATTACACAAGTAGCCAATCACAAATATAAGTAACTGAGTCCGTACCTCTAACCGGATGCTCCGCATAAGTATGCGGATGGTCGAGGCCAGACTTTGAACCGGATGCTCTTCCAAAATTATCAATGAAGTCAAGGTCGAGCCTTAAATCCGGAAGCCCGACAAAGGTGTCAACTTTGAATTGCGGAGCGGAACTCATTGTTACTGATGTAGCTCGTGAAGCCGTAACATCAATGAAGTAAGGATAACTATCGCCGGAGCGAACTCCTAGTCTAGCTAAGGCCCAAACTATCAGCCTCTAGTCTGCTACACCAGTCTACAAGGATTTAAGCCGACCGAGCGAGGTCGGGGCAAAACTAAGTCCTGCCGGTTTGCATTTCTAAGGCAAGCTCTAGTCAAACCTAAACGAAGACCCAACATACTTCCAATTAAACCGTACTCCAACATACAAAGCATACAAGTACTCCACATAGCAAAGAAGGTCAATTAATAACATAAAGCATGCTCACAGTTACTCGATAGTTCTCAGAAATAGGTTGAAAACATGATTTTTAACACTTATGCATGATTCAATAACTACCCAACCCAAATCTCAACTAATCAACATGCATTCACATGTTCGAGTTCAATCTAAGAGAAGGAAATCGTAGCCTACCTGTAGGCAGATCACGCCGCGCTCCAAAAATCACTTCTTCGGAGCTTTCCCTTTCCGAATGGCCTTGAAAAGTTGACACACTATAAAAAATAGTCACAATGTTATTACGGTCGTTTAGACACTAAAATCGCAAGAAACTGAGACGGCCTAATTTCGCGGTTAAAACGGGAAAAGTGGGACCTGCATTGAAAATTCCAGGATTAACCCCAAATATAGGTCCTAAACAGCTCTCGGAACTTGTGTTCCAAAGTGGAACACAATTCGGGGCTTGAAACATTCCCAACACGAACATGCAACCAAAAACCCAATAATACGCTAAAATTCAACAACAATGGCAGCAACTATTTACAAGAATTTACCAGAAACGAAGGTTCAACTGCTAAAACCAATCACACCACGACGATCCTCACGAAATCCCCCACAATATACGCTCTTGAATCACCAGATTCGGACCTAAAATGGCCAAGAAATCTTCTTCTAAAAGTTTCCCAAAAGTTGAACTCGAAAATGAGCTATGACAGCAGTTAAAACACAATTTTTTACCTTTAACAAGACTTCAAATGTGAATTCTGTCCACGCCAACACGTTCTCCTCGAAAATTCACTCAAGTTAACCTCCTGAATCGCCCAAATCGGACCTTTATAGCTCAAGGTATCACACTTTTAAGAAGAAGGCTTAAGCTGAGTTGGGGCTTTAATAAAAGACGAAACTGGTCGCTATTAACCCCAAAATTCTGGTCCCTAAAAGGGCTGCACCAGATTTCAGCTTTGGCTAATTTCTTCAAAGTCTCCGACGGTGTGCTCCGAATTCGTTCGGAACCTGATAAAAATAAAACAGATATCTGCCCTACTAAATTCGACATTCCGGACTCAACGGCGCAGTCAAAATTTCCATCAGAGGTCATCTCGATAAAAAGTGGGTCCCACTTCCATCGTCCATTTTAAGTCAAAAAACACACAAGGGCTCGAAAAAATATCGGCAACCTCAGGACACAAAAGAAGGGTCATACTAGACCAAACTCGACATTCCGGAAACCTCAGAATGTTGACTAAAGTCAAACTTAGCCTTAAACTTAAAGTTAAAACGCCTAATCGCACCAACTAGCCTAAGATGACCCTTTCGGAGCTGATGAAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTTATAAGCTCCAAAAACACTAAAACTCACACAATAACCAAACGAACGACCAGCTGACCAAACTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGACGCACAAAAGACAAAACACAGAAATGACCAAGAGGGTCATTACATTACCTTTGATCGACCTTGGAAGTTGGACCCTATTCATATTTCTATGTAGTGTCAAGCTGCCAAGTTTTGTTGTAGATGAGTTTTGTCTTCTGTATTGACAATTCAAATTTGCACTTGGCTGGAAAAGGAAAACTTCAACCTTTTTACCTCGCTTTGCTCCATTTCTTTCAGTTGTCAGTTTGTCTGATGTGAAATGGAAACTCCATTTAGGTGACTAATTGATGCTTGCAGATAACTGGTTTTCCTCTTTCTTAAGCTTCTATGCGACCTAAGGTCCATAAACAACTAAACCGTGTCAGTGAGGGGCAGAGAGGAAAAAATAGGAAAAAATGTATGATATTTATTGAAAGATCTCTAGTTGATGTCACTTGGCAAAAAATAAGAATGGAGCTCCAGTTGTTGCTTTTCACAAGTTGTATATATGGTTGGCAACTTGATAAATGCCAGTAAATGGCTCTGCTGAGTCATTGAAACAATTTATACATACTTTGACACCTGCTTGGTGTCTAGTTATGAAAATTTTGACTTACCAAAAAAGATTCTAAGACTTCTGATACCTTGTTGCTTGCTGACTGTGTGAGAGCTTCACTTTTCTTTGTTGTACTGTCAGTTCCATTTTAAAGTTGCCTAATTCTTCTCTGCAATCCTGGTTAAATTTTTTGTCCTTCACCATTCTATTGAACCACTACTTCAGCTTCTTAGAGAATTGAAGTTGTCAGCCTTTGTATAGATTTCAGATTCTATGTTGACTACTTGATGGCTGTTGTGTGTGACTGATTGTTTCAGTCTTGACATGCATGCGTTAGTTAGTTTCCATGTATTGTTCTGCAACCATGCTACCAAGTCATTCAACAGGCTTTCTATTAATTGGTAATTTACATCCATTTTTTTTCTTCAGGCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAGGTACTATTTGTTGAGCTTTTCTGTGCTTGTTAGTTCTCTGAGTAATTCCCATAGTTTTGTTATTTCATCCAGCATCTTACATTTTGCCTCTGCATTTTTTCTTGTACTGTACAGAGCTACAAAGTTGGAACATTGTCTTGCTTCATCCATGGTATTCATAGAGAATTACAGATCTTCCATGAGAAAAGTTGCTCTCAAACTTTACCTGTTTGTCTCAAAACTTGGGATATATCCAGTACTAGTTTCTAGGTTACATATTGACTTCTGAGCTAGGCAGTTGGATTTATACCTCAAACTAAGAAATCTGAATGCTGCTTGAGTACATAGAGTGATGATTCCATAGAGATTGGTATTTGTTAATAACTAATAACAAACTTCTATCTCTGGCGTCAATGGACTATTGTGGTTTTGCAAGAATGCTTCTGTGCACGATATTTTCTGCTTGCTGTCACTTTGTCCTTAGCACGACTAAGAATTCTAAATAAGGGAGTCTGCTGACTAACCAATTACCTTTGTTAGATGCCCTACTGGGCGAAGGTCTGGCATGTATAGACAAGTAGACATGCCATATCATGGTGCTGTAGAAGACAAGTGATGTCTTGACTCTTCCCTCTCACGGCTTAGATGTAAATGAAGAATTAAATTCATTTTTCGTAACTCTGTATCAGTTTATGGGTTCTTTTCTATACATCCCCATTCACTTTATCAGTTATTGAGACACCTCTATGAAACTTGATTCATGTTTGGCTTGGAGTCTACTGAGTCATGAATACATATTTGATTGACTGTTCTACTACTATTAAGATCTTTTCACTGTCCAATATCACATTTAAGTCACAGCTTGCTAGCTACCAGGCTATACACTGGATTTTCTTTTACCACAGTTCTCCTTTTTCTCACATTTTCCCTCAAATATTTTGTACAGTTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAGGTAACTGCTATATTTGAACACTTCTACAACGTATTATCTGATTGTGTTTGCTGCTTTTGCCGATTTTCTGCTGCATTCTTCAATTACTTTATTGACTCTGGCTCCTCTTCTTTCTTTTCATCATCTGCTACATTTTGATTTTTTGTGGGATAGAGTTACCTGGTCCTGTATTGGTGGGAGGTTGTAGGAACTCTATGGAATTAGTGGAGGTGCGCTAGATCTGGCCAGACACCACATTTGTAAAAATACAATGTCGCTAAATTCGGTTAGCACAATCCAACTTCATCCCTGTATTCGCCATCTCTGGATGAAACCTAAATTTGGATTAACTTCCATACGGTACGAATATCTCCCCAGATCTTTTGGGATTGAAGCGTTACTGTTGTTGCCGTTGTTTCTTGATCCAAATCTGTCTGGATTAGATTCCACAATTTTTGGTTCAGGACTAGACTGAAATTGCCCCCATCTTAATCTGTATTATGGAAGCTGCCAGTGCATAGAACTATTTTCTTTTTGAAATTTCAAGTAATGTGGATTGAAGTCCATGAAGTACTCTTTGTTAATAGCTTGCAGTCTTTAGCTGGTGCTTAATCTAATGAAGGAAGTTGTTTTAGCATCTTTCTAGAATGTCCAAAGTTTTCTGTTAACATCCTTCTTACAGGGCAGAAAAAAAGGACTACTCTTTTTTGTTCACTTGTCTCTCTATTAACCTAAATCCAAATAGTTTTATTAAGGTGGTTATTTCTTTTCAGGAGCCTTAGATGTGCTAAGAACATGGCCCCTTGGATAAATGGGTATAGGCTTTAATTATTTGTGTGCTGGACGGAATTCCTACATGATAATTGATGTCACCTTTTCCCATTCCAGGGAGTGTTGAAAAGAAGTTCAATTCCATTAGAAGCCAGTTCCTTTGGGAAGGAAATGCTAACAGGAAAATTTTGATTTGACCAAATGGCATGAAAAAAAGACAATAAAGGAGGTGGATTGGGTGTTAAAAATTTTAAAGCATCATAACAAGAAGGGGTATTCCTTTGTGTAGTTCTTCTATGAAATTCTCAGGAATGTGCCGAACACCTTTTTATTCATTGTAATCATGCAAAGCAGATATGAATTCTGTTCCTAACTCAGAGTGATATCAGGTATGAATTAGGTGATGCCAAAGAATGTGAGTGATCTATTGAATTGTTGGCAAAATCAGAATGTCGGGAAAATGAAATGCAAATCTGGGAAATGATACCTCTTTGCATCTTTTGTACCCTTTGGTTGGAAAGGACTACACGATGTTTTGAGAATTGGGAGAATCATTTAGCTAGCGTTAAGAATAGTCGTCTTCTTAATCTTTACTTGTGGTGTTGGGTACGTATGGCAGAAGACTTAGATCAGTACATGGATTTTATAGAAGCTTTGAGAATGTAACAGTTGCAGTTGCGCTGTAGTTTGTATGCTTTTAGTACCTTCTTGGTACTTATCGGGAAAAAAATGTGGTTATTTCTTTTTCGATACCTGAGACTTTACATATCAGTTGATGATTTCTCAGTTTCGACATTATACACCAAAGGATATATTTCAGAATACTTTATTGAATATGATGCTATGGTAGAGCTTTTCTTTAATATTTGTTTCTTTGCTGTCAATGTGCAGGTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAGGTTAGTTGTTTCAAACTAGTAAATTAAGCTGGAGGTGCAATATTGATTGTAGGAGCAGGAAAGAGCAAGGCATCCTGTATAAATTCTTGCAGGATGGAAGTTGTATACCCATATAATAAGAGTTATTATGTTACAGTGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTTGTAAGTGATTCAAACAACCTAACAAGCTACTACTGATTCTATTTTGTTTGTTATTGGAGACGGCCTTAGTAAATACCTGGACATCATTTAAGATACTAGTTTATTACTGGCTAAAGGAGGGGTTTTCTTTTACACAGGTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAGGTATATTAATCATGGCTAATTATCATTTTTCTATTTCTGTATCATCAGAATGTTCTGTGGTTAGATTGGCTCATTATTTTCCACTGCTTTCTTTCCTGGGACAACTATTACTTTTGAATGGATGTATAACTTTTATGTTCCTATACTTGAGGCATTTATCAGTGCCAGTTTACTGCAATATTTGATTCTTAGAAGACTTGGCTCATTTAAGAAATGTCCAAGAACATTTGTCAACGGTAAATTCTGACTTCGAATGCCTTGTACAAGGGAACAAGGAAGATGTATCACAGTAATTTTATTAAGATTCAATATGAAGAGCAGGTCTCTCTTATGATAAAAATGTAACATTGTAATTTAGTTACATTTCCATATGAGAGTACTTGGTATGATGAACATATAAAGGATTTCTTTCAGTTTCACTGTTTGTGCTAGCTTTTTCCTTTCCTTATATTCTAATCCGGCTTGTACTAGGATCTTTATCCTAGAGCAGCATCTGTTGTCCAGTTATAGGACTTCAACTGATGCATGTCAGGTCTTGTCTCTGTAGCAACAGAGATTATGCTAATTTCTCCATTCGTAGAGGACGGTCGGGACTTCTATCAGCACTCTCTTCCTGAACCATCTGACATGTTACAATTTAATTCGCAGAACTTATTTCTCTATGGTTATGGTGCTATATTCAACTTT</genome_strand>
        <mrna_strand>AGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................CCTGTTTTGGTATTTATGTCCAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG...................................................................................GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG........................................................................................................................................TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTT.........................................................................................................................................GTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTATTTCTCTATGGTTATGGTGCTATATTCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688839" ref_strand="+" ref_description="SGN-E688839 [t3_tus_55_A13]">
      <seq>agatttcatcaaagcaacgtgctctcaatgtcctattggttgtaggagattgtatgctggttggtttacagcctgttttggtatttatgtccaaagtggatggaaaattcaagtttagtcccgtaagtgtcaacttcttgacagaggcgacaaaagtcgtctttgcaataataatgcttttaatccaggccaggcatcaaaaggttggagaaaagccacttctttcaatatccacatttgtccaggttttggttattgcagtgctgttgaaatttatcatgaaaaggcgattttccgtaattcagtgggaggctcttgctttgctgctaattgggataagcattaatcaacttcgatcccttcctgaaggcaccacttctttggctcttccagttaccacaattgcctacatctatacactgatttttgtaactgtgccttctatggcctcagtattcaatgagtatgctttgaagagtcaatatgacactagcatatatctccagaacttatttctctatggttatggtgctatattcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="77064" stop="66593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76764" g_stop="76694" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76357" g_stop="76241" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="188" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76157" g_stop="76101" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="245" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76100" i_stop="68114" i_length="7987">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68113" g_stop="68054" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="305" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67917" g_stop="67795" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="428" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67794" i_stop="67658" i_length="137">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67657" g_stop="67580" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="506" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67579" i_stop="66932" i_length="648">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66931" g_stop="66893" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="545" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E688839" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76764" e_stop="76694"/>
          <exon e_start="76357" e_stop="76241"/>
          <exon e_start="76157" e_stop="76101"/>
          <exon e_start="68113" e_stop="68054"/>
          <exon e_start="67917" e_stop="67795"/>
          <exon e_start="67657" e_stop="67580"/>
          <exon e_start="66931" e_stop="66893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAGGTAGCGGTCCTTTTCAAATGTTCTAATTGTTTATTCGTATTCTTCTCAGTTATCAGAAAAAAAGTTCTTAATTTTTGCATGCAAATGATAATATTCTACCAGTAAAGTGTACACTCACTAAGCTTCTTGATTTTGTGTGGATCGGTCTCTTTCCATAACAATCACCATTGATTTTTTTTTTAATTTAAAAGTAGCTTCTGCTTTTCTATCGAATATAGTTAATTATAGCTGTCACCTCATATCTTTTACCACTTGTTTCCATCAGCAAAACATTTAAATTTGCTGCTTAAAAATGAGAAAGACTTGTCTCACCCGGTATTTTATCCCCCTTTTCAGCCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAGGTACACTATTTTTATGTTTTTTGTTTACTTGATTTTTTTTTCGATAGTTCAATTTCATGTTTCTTGTTGGAATGTTTCTGCAGGCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAGGTAAAATGTCATTGGTGTGAGTGTTGTAACTGCTCTTAGTTCTCCTGGGTGGGTTGAAACCTAGTTTATTGCTCATCATGTCCTTGTAATAGCAAGATTCTTGCATATGTTCTTTATGATAATTTAAAGTTTGTAAGTGATGTAATATCTGAGGAGCCAGTCTCTAAATTGAGTCCTCTTCTTACATGATTAACCTATATTCATGTATGACACTAAGGATTTGAAAGATGCCTACCCTGGATGACTGTCTTGGACAAGAGTATTGTTGCTGTTGGACGCAGAAAGCTTTAAACAGCTTTCCGAAGTATCAATTTAATTTCTGTGTAAGATCCTGCACAGAAGAAAGATATCATGAGTTAAATCCCACTGGAAACAAAATCATTAGGTGGTTTCTTCCCATTGTCTGCCAAAGTTGTTACTGATGGGTGGTGGGAGGTGGCAGGTATCCCGTGGAACTAGTCGAGGTGTGCACAAGCTGGCCCAGACACCACAATTTATTTTCCCTAAAAAATAGATATAATGAGTTGTATAAAAGGGAAAAGTTTTACCACACCTCTTATGGTGTTCGCCAAATCTCCCAGGTGGGGAACTACACATACAAGAAGGAAATTTGAGCTTGATGCAAATGGATGGGTGTCAAGAAAGATAGGATGTTATGGTTTAAGGGAACAGCCATCGTGAAGATCTGCTAATGATATTATGCAGTAAAGAAAAGGTGCAAGCTGGACATTGCACTTGCTTGGGGCATGCTTCGTATAGTTGATATTGGATAAAAGAACTAAATGCTTCTCTTCACTGGTATAGTCTGCTGAAAAGAAAGTCCAAGAACTACTGCAATTCCTCTTGTGTATATCAGGACACCTTCATTTATTCATTCCACAGACGAGTCAATATGTTGCTGTGAGTTCTACCTTTCTTCATATCAAGATCCAGGCTCTAAAGTATGAGTATTATCTCCATAAGAGTGAAACAGGAATTAACATAAGTGGAGAATAATAGCAATCCTGCTCTCTTCTTTTCGGTTTCTGTTTGTAAAGTTCTTCATCAGCATTTTTAGATGCTGATGTTTTCGGAATGAATGCAAGTTACCTTATGAAAAAGAAAACATAAGTCGAGAATATGATTATATTGAGTTGATCCAAAATGTGGAGAATAAGGATGAAGACTCTGAGTTGATCCGGAGATACAGAAACTTTTATAGTATTGTCAAAGAATAGTTTTATTGGGACAAATGCAAAAACAGGCTGAACATTGAGATAATGTGAAACGACCTTGGAAATTAAAACCTTCTCATATATCTACATACTGTTCGAGCTGCAAGTTTTGCCGTGTCACGACCCAATTTCTCGAGTCATGATGGCACCTACTATAACCCACCAGTAGGTAACCCGACCCGTAACCCGGAACAACGCACAATGGGTCTGAGGGTAGAAACTAAACAAGAGTAGGCAAAATTTACTACTCCCTCCGTTTAAAAACGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCTTTCCTTTTTGGCAACACTTTATCTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTATATGGCATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAGAAAGTCTTTTTTTTATTCTTAAACTCCGTTCCAAGTCAAACTAGGCTATCATTTTTGAAACGGAGGGAGTATAACAATATAAACAGGCGGAAGCAAACCAAAACATATATACAAATAAGGATCCCTCCCAGAACCTGGAAGTCACTAGTACAGATCTACCAACAAAACGAGTACAAGTCCCAAAAGTGAACCACTGAAACTAGACTGTCTCGAAAGGTAAAAGACAAGTCTATATATATACAGATGGAGACTGAAATAGTACAGAATGTCGTGTGCTCACCCTCGTCTCCAGATCAGACTGCTCCAAACTCGATCAACATTGGCTACTCGTGCTCGAACCTACATCACGAAAATAGATGCAAAGCATAGCATGAGTACCAAACACTAGGTACCCAGTATGCATCATAGGCTGACTAAACTTGAAAAGTAAAGCAATATGAAAAGAAGGAATAACACAACTAGAGGTCAAGAACGAAAGTCTAAGTAACAATGGAATGCACACGAGTGTAGAAAGAACTAACTAAAGTAATATATAAGCTAACTACACCTAACTGGACCCCCCATAAGCCCAGAAGGCACACTTGTGCGCAAGTTTAAATAAAAACTCAAACGGACCCTCATTAGCTCGACGAGTACAGAGAATAACTATAACTAAGGAGAATAGAACCCAAGGCCAAAGAACATCGAACTAGATGCTCAAAACCAATAAGTAGAATCTGAGGGTACGGAGGTCCGGACACTCACCAAAATTACACAAGTAGCCAATCACAAATATAAGTAACTGAGTCCGTACCTCTAACCGGATGCTCCGCATAAGTATGCGGATGGTCGAGGCCAGACTTTGAACCGGATGCTCTTCCAAAATTATCAATGAAGTCAAGGTCGAGCCTTAAATCCGGAAGCCCGACAAAGGTGTCAACTTTGAATTGCGGAGCGGAACTCATTGTTACTGATGTAGCTCGTGAAGCCGTAACATCAATGAAGTAAGGATAACTATCGCCGGAGCGAACTCCTAGTCTAGCTAAGGCCCAAACTATCAGCCTCTAGTCTGCTACACCAGTCTACAAGGATTTAAGCCGACCGAGCGAGGTCGGGGCAAAACTAAGTCCTGCCGGTTTGCATTTCTAAGGCAAGCTCTAGTCAAACCTAAACGAAGACCCAACATACTTCCAATTAAACCGTACTCCAACATACAAAGCATACAAGTACTCCACATAGCAAAGAAGGTCAATTAATAACATAAAGCATGCTCACAGTTACTCGATAGTTCTCAGAAATAGGTTGAAAACATGATTTTTAACACTTATGCATGATTCAATAACTACCCAACCCAAATCTCAACTAATCAACATGCATTCACATGTTCGAGTTCAATCTAAGAGAAGGAAATCGTAGCCTACCTGTAGGCAGATCACGCCGCGCTCCAAAAATCACTTCTTCGGAGCTTTCCCTTTCCGAATGGCCTTGAAAAGTTGACACACTATAAAAAATAGTCACAATGTTATTACGGTCGTTTAGACACTAAAATCGCAAGAAACTGAGACGGCCTAATTTCGCGGTTAAAACGGGAAAAGTGGGACCTGCATTGAAAATTCCAGGATTAACCCCAAATATAGGTCCTAAACAGCTCTCGGAACTTGTGTTCCAAAGTGGAACACAATTCGGGGCTTGAAACATTCCCAACACGAACATGCAACCAAAAACCCAATAATACGCTAAAATTCAACAACAATGGCAGCAACTATTTACAAGAATTTACCAGAAACGAAGGTTCAACTGCTAAAACCAATCACACCACGACGATCCTCACGAAATCCCCCACAATATACGCTCTTGAATCACCAGATTCGGACCTAAAATGGCCAAGAAATCTTCTTCTAAAAGTTTCCCAAAAGTTGAACTCGAAAATGAGCTATGACAGCAGTTAAAACACAATTTTTTACCTTTAACAAGACTTCAAATGTGAATTCTGTCCACGCCAACACGTTCTCCTCGAAAATTCACTCAAGTTAACCTCCTGAATCGCCCAAATCGGACCTTTATAGCTCAAGGTATCACACTTTTAAGAAGAAGGCTTAAGCTGAGTTGGGGCTTTAATAAAAGACGAAACTGGTCGCTATTAACCCCAAAATTCTGGTCCCTAAAAGGGCTGCACCAGATTTCAGCTTTGGCTAATTTCTTCAAAGTCTCCGACGGTGTGCTCCGAATTCGTTCGGAACCTGATAAAAATAAAACAGATATCTGCCCTACTAAATTCGACATTCCGGACTCAACGGCGCAGTCAAAATTTCCATCAGAGGTCATCTCGATAAAAAGTGGGTCCCACTTCCATCGTCCATTTTAAGTCAAAAAACACACAAGGGCTCGAAAAAATATCGGCAACCTCAGGACACAAAAGAAGGGTCATACTAGACCAAACTCGACATTCCGGAAACCTCAGAATGTTGACTAAAGTCAAACTTAGCCTTAAACTTAAAGTTAAAACGCCTAATCGCACCAACTAGCCTAAGATGACCCTTTCGGAGCTGATGAAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTTATAAGCTCCAAAAACACTAAAACTCACACAATAACCAAACGAACGACCAGCTGACCAAACTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGACGCACAAAAGACAAAACACAGAAATGACCAAGAGGGTCATTACATTACCTTTGATCGACCTTGGAAGTTGGACCCTATTCATATTTCTATGTAGTGTCAAGCTGCCAAGTTTTGTTGTAGATGAGTTTTGTCTTCTGTATTGACAATTCAAATTTGCACTTGGCTGGAAAAGGAAAACTTCAACCTTTTTACCTCGCTTTGCTCCATTTCTTTCAGTTGTCAGTTTGTCTGATGTGAAATGGAAACTCCATTTAGGTGACTAATTGATGCTTGCAGATAACTGGTTTTCCTCTTTCTTAAGCTTCTATGCGACCTAAGGTCCATAAACAACTAAACCGTGTCAGTGAGGGGCAGAGAGGAAAAAATAGGAAAAAATGTATGATATTTATTGAAAGATCTCTAGTTGATGTCACTTGGCAAAAAATAAGAATGGAGCTCCAGTTGTTGCTTTTCACAAGTTGTATATATGGTTGGCAACTTGATAAATGCCAGTAAATGGCTCTGCTGAGTCATTGAAACAATTTATACATACTTTGACACCTGCTTGGTGTCTAGTTATGAAAATTTTGACTTACCAAAAAAGATTCTAAGACTTCTGATACCTTGTTGCTTGCTGACTGTGTGAGAGCTTCACTTTTCTTTGTTGTACTGTCAGTTCCATTTTAAAGTTGCCTAATTCTTCTCTGCAATCCTGGTTAAATTTTTTGTCCTTCACCATTCTATTGAACCACTACTTCAGCTTCTTAGAGAATTGAAGTTGTCAGCCTTTGTATAGATTTCAGATTCTATGTTGACTACTTGATGGCTGTTGTGTGTGACTGATTGTTTCAGTCTTGACATGCATGCGTTAGTTAGTTTCCATGTATTGTTCTGCAACCATGCTACCAAGTCATTCAACAGGCTTTCTATTAATTGGTAATTTACATCCATTTTTTTTCTTCAGGCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAGGTACTATTTGTTGAGCTTTTCTGTGCTTGTTAGTTCTCTGAGTAATTCCCATAGTTTTGTTATTTCATCCAGCATCTTACATTTTGCCTCTGCATTTTTTCTTGTACTGTACAGAGCTACAAAGTTGGAACATTGTCTTGCTTCATCCATGGTATTCATAGAGAATTACAGATCTTCCATGAGAAAAGTTGCTCTCAAACTTTACCTGTTTGTCTCAAAACTTGGGATATATCCAGTACTAGTTTCTAGGTTACATATTGACTTCTGAGCTAGGCAGTTGGATTTATACCTCAAACTAAGAAATCTGAATGCTGCTTGAGTACATAGAGTGATGATTCCATAGAGATTGGTATTTGTTAATAACTAATAACAAACTTCTATCTCTGGCGTCAATGGACTATTGTGGTTTTGCAAGAATGCTTCTGTGCACGATATTTTCTGCTTGCTGTCACTTTGTCCTTAGCACGACTAAGAATTCTAAATAAGGGAGTCTGCTGACTAACCAATTACCTTTGTTAGATGCCCTACTGGGCGAAGGTCTGGCATGTATAGACAAGTAGACATGCCATATCATGGTGCTGTAGAAGACAAGTGATGTCTTGACTCTTCCCTCTCACGGCTTAGATGTAAATGAAGAATTAAATTCATTTTTCGTAACTCTGTATCAGTTTATGGGTTCTTTTCTATACATCCCCATTCACTTTATCAGTTATTGAGACACCTCTATGAAACTTGATTCATGTTTGGCTTGGAGTCTACTGAGTCATGAATACATATTTGATTGACTGTTCTACTACTATTAAGATCTTTTCACTGTCCAATATCACATTTAAGTCACAGCTTGCTAGCTACCAGGCTATACACTGGATTTTCTTTTACCACAGTTCTCCTTTTTCTCACATTTTCCCTCAAATATTTTGTACAGTTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAGGTAACTGCTATATTTGAACACTTCTACAACGTATTATCTGATTGTGTTTGCTGCTTTTGCCGATTTTCTGCTGCATTCTTCAATTACTTTATTGACTCTGGCTCCTCTTCTTTCTTTTCATCATCTGCTACATTTTGATTTTTTGTGGGATAGAGTTACCTGGTCCTGTATTGGTGGGAGGTTGTAGGAACTCTATGGAATTAGTGGAGGTGCGCTAGATCTGGCCAGACACCACATTTGTAAAAATACAATGTCGCTAAATTCGGTTAGCACAATCCAACTTCATCCCTGTATTCGCCATCTCTGGATGAAACCTAAATTTGGATTAACTTCCATACGGTACGAATATCTCCCCAGATCTTTTGGGATTGAAGCGTTACTGTTGTTGCCGTTGTTTCTTGATCCAAATCTGTCTGGATTAGATTCCACAATTTTTGGTTCAGGACTAGACTGAAATTGCCCCCATCTTAATCTGTATTATGGAAGCTGCCAGTGCATAGAACTATTTTCTTTTTGAAATTTCAAGTAATGTGGATTGAAGTCCATGAAGTACTCTTTGTTAATAGCTTGCAGTCTTTAGCTGGTGCTTAATCTAATGAAGGAAGTTGTTTTAGCATCTTTCTAGAATGTCCAAAGTTTTCTGTTAACATCCTTCTTACAGGGCAGAAAAAAAGGACTACTCTTTTTTGTTCACTTGTCTCTCTATTAACCTAAATCCAAATAGTTTTATTAAGGTGGTTATTTCTTTTCAGGAGCCTTAGATGTGCTAAGAACATGGCCCCTTGGATAAATGGGTATAGGCTTTAATTATTTGTGTGCTGGACGGAATTCCTACATGATAATTGATGTCACCTTTTCCCATTCCAGGGAGTGTTGAAAAGAAGTTCAATTCCATTAGAAGCCAGTTCCTTTGGGAAGGAAATGCTAACAGGAAAATTTTGATTTGACCAAATGGCATGAAAAAAAGACAATAAAGGAGGTGGATTGGGTGTTAAAAATTTTAAAGCATCATAACAAGAAGGGGTATTCCTTTGTGTAGTTCTTCTATGAAATTCTCAGGAATGTGCCGAACACCTTTTTATTCATTGTAATCATGCAAAGCAGATATGAATTCTGTTCCTAACTCAGAGTGATATCAGGTATGAATTAGGTGATGCCAAAGAATGTGAGTGATCTATTGAATTGTTGGCAAAATCAGAATGTCGGGAAAATGAAATGCAAATCTGGGAAATGATACCTCTTTGCATCTTTTGTACCCTTTGGTTGGAAAGGACTACACGATGTTTTGAGAATTGGGAGAATCATTTAGCTAGCGTTAAGAATAGTCGTCTTCTTAATCTTTACTTGTGGTGTTGGGTACGTATGGCAGAAGACTTAGATCAGTACATGGATTTTATAGAAGCTTTGAGAATGTAACAGTTGCAGTTGCGCTGTAGTTTGTATGCTTTTAGTACCTTCTTGGTACTTATCGGGAAAAAAATGTGGTTATTTCTTTTTCGATACCTGAGACTTTACATATCAGTTGATGATTTCTCAGTTTCGACATTATACACCAAAGGATATATTTCAGAATACTTTATTGAATATGATGCTATGGTAGAGCTTTTCTTTAATATTTGTTTCTTTGCTGTCAATGTGCAGGTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAGGTTAGTTGTTTCAAACTAGTAAATTAAGCTGGAGGTGCAATATTGATTGTAGGAGCAGGAAAGAGCAAGGCATCCTGTATAAATTCTTGCAGGATGGAAGTTGTATACCCATATAATAAGAGTTATTATGTTACAGTGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTTGTAAGTGATTCAAACAACCTAACAAGCTACTACTGATTCTATTTTGTTTGTTATTGGAGACGGCCTTAGTAAATACCTGGACATCATTTAAGATACTAGTTTATTACTGGCTAAAGGAGGGGTTTTCTTTTACACAGGTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAGGTATATTAATCATGGCTAATTATCATTTTTCTATTTCTGTATCATCAGAATGTTCTGTGGTTAGATTGGCTCATTATTTTCCACTGCTTTCTTTCCTGGGACAACTATTACTTTTGAATGGATGTATAACTTTTATGTTCCTATACTTGAGGCATTTATCAGTGCCAGTTTACTGCAATATTTGATTCTTAGAAGACTTGGCTCATTTAAGAAATGTCCAAGAACATTTGTCAACGGTAAATTCTGACTTCGAATGCCTTGTACAAGGGAACAAGGAAGATGTATCACAGTAATTTTATTAAGATTCAATATGAAGAGCAGGTCTCTCTTATGATAAAAATGTAACATTGTAATTTAGTTACATTTCCATATGAGAGTACTTGGTATGATGAACATATAAAGGATTTCTTTCAGTTTCACTGTTTGTGCTAGCTTTTTCCTTTCCTTATATTCTAATCCGGCTTGTACTAGGATCTTTATCCTAGAGCAGCATCTGTTGTCCAGTTATAGGACTTCAACTGATGCATGTCAGGTCTTGTCTCTGTAGCAACAGAGATTATGCTAATTTCTCCATTCGTAGAGGACGGTCGGGACTTCTATCAGCACTCTCTTCCTGAACCATCTGACATGTTACAATTTAATTCGCAGAACTTATTTCTCTATGGTTATGGTGCTATATTCAACTTT</genome_strand>
        <mrna_strand>AGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................CCTGTTTTGGTATTTATGTCCAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG...................................................................................GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG........................................................................................................................................TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTT.........................................................................................................................................GTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTATTTCTCTATGGTTATGGTGCTATATTCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321000" ref_strand="+" ref_description="SGN-E321000 [cTOB-13-H7]">
      <seq>gctgttttggtatttatgtcgaaagtggatggaaaattcaagtttagtcccgtaagtgtcaacttcttgacagaagcgacaaaagtcgtctttgcaataataatgcttttaatccaggccaggcatcaaaaggttggagaaaagccacttctttcaatatccacatttgtccaggctgcaagaaacaatgtccttcttgctgtaccagcactactctatgccataaacaactacctaaagttcatcatgcagttatatttcaatccagcaaccagtgaagatgctaagcaatctgaaagttttggttattgcagtgctgttgaaatttatcatgaaaaggcgattttccgtaattcagtgggaggctcttgctttgctgctaattgggataagccattaatcaacttcgatcccttcctgaaagcaccacttctttggctcttccagttaccacaattgcctacatctataccactgatttttgtaactgtgccttctatggccctcagtattcaatgagtatgctttgaagagtcaatatgacactagcatatatctccagaacttatttctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="76656" stop="66617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76357" g_stop="76241" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76157" g_stop="76101" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="174" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76100" i_stop="70803" i_length="5298">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70802" g_stop="70725" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="252" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70724" i_stop="69800" i_length="925">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69799" g_stop="69755" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="298" r_length="46" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69754" i_stop="68114" i_length="1641">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68113" g_stop="68054" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="358" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67917" g_stop="67795" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="483" r_length="125" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67794" i_stop="67658" i_length="137">
            <donor d_prob="0.911" d_score="0.96"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67657" g_stop="67580" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="562" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67579" i_stop="66932" i_length="648">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66931" g_stop="66917" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="577" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E321000" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76357" e_stop="76241"/>
          <exon e_start="76157" e_stop="76101"/>
          <exon e_start="70802" e_stop="70725"/>
          <exon e_start="69799" e_stop="69755"/>
          <exon e_start="68113" e_stop="68054"/>
          <exon e_start="67917" e_stop="67795"/>
          <exon e_start="67657" e_stop="67580"/>
          <exon e_start="66931" e_stop="66917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAGGTACACTATTTTTATGTTTTTTGTTTACTTGATTTTTTTTTCGATAGTTCAATTTCATGTTTCTTGTTGGAATGTTTCTGCAGGCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAGGTAAAATGTCATTGGTGTGAGTGTTGTAACTGCTCTTAGTTCTCCTGGGTGGGTTGAAACCTAGTTTATTGCTCATCATGTCCTTGTAATAGCAAGATTCTTGCATATGTTCTTTATGATAATTTAAAGTTTGTAAGTGATGTAATATCTGAGGAGCCAGTCTCTAAATTGAGTCCTCTTCTTACATGATTAACCTATATTCATGTATGACACTAAGGATTTGAAAGATGCCTACCCTGGATGACTGTCTTGGACAAGAGTATTGTTGCTGTTGGACGCAGAAAGCTTTAAACAGCTTTCCGAAGTATCAATTTAATTTCTGTGTAAGATCCTGCACAGAAGAAAGATATCATGAGTTAAATCCCACTGGAAACAAAATCATTAGGTGGTTTCTTCCCATTGTCTGCCAAAGTTGTTACTGATGGGTGGTGGGAGGTGGCAGGTATCCCGTGGAACTAGTCGAGGTGTGCACAAGCTGGCCCAGACACCACAATTTATTTTCCCTAAAAAATAGATATAATGAGTTGTATAAAAGGGAAAAGTTTTACCACACCTCTTATGGTGTTCGCCAAATCTCCCAGGTGGGGAACTACACATACAAGAAGGAAATTTGAGCTTGATGCAAATGGATGGGTGTCAAGAAAGATAGGATGTTATGGTTTAAGGGAACAGCCATCGTGAAGATCTGCTAATGATATTATGCAGTAAAGAAAAGGTGCAAGCTGGACATTGCACTTGCTTGGGGCATGCTTCGTATAGTTGATATTGGATAAAAGAACTAAATGCTTCTCTTCACTGGTATAGTCTGCTGAAAAGAAAGTCCAAGAACTACTGCAATTCCTCTTGTGTATATCAGGACACCTTCATTTATTCATTCCACAGACGAGTCAATATGTTGCTGTGAGTTCTACCTTTCTTCATATCAAGATCCAGGCTCTAAAGTATGAGTATTATCTCCATAAGAGTGAAACAGGAATTAACATAAGTGGAGAATAATAGCAATCCTGCTCTCTTCTTTTCGGTTTCTGTTTGTAAAGTTCTTCATCAGCATTTTTAGATGCTGATGTTTTCGGAATGAATGCAAGTTACCTTATGAAAAAGAAAACATAAGTCGAGAATATGATTATATTGAGTTGATCCAAAATGTGGAGAATAAGGATGAAGACTCTGAGTTGATCCGGAGATACAGAAACTTTTATAGTATTGTCAAAGAATAGTTTTATTGGGACAAATGCAAAAACAGGCTGAACATTGAGATAATGTGAAACGACCTTGGAAATTAAAACCTTCTCATATATCTACATACTGTTCGAGCTGCAAGTTTTGCCGTGTCACGACCCAATTTCTCGAGTCATGATGGCACCTACTATAACCCACCAGTAGGTAACCCGACCCGTAACCCGGAACAACGCACAATGGGTCTGAGGGTAGAAACTAAACAAGAGTAGGCAAAATTTACTACTCCCTCCGTTTAAAAACGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCTTTCCTTTTTGGCAACACTTTATCTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTATATGGCATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAGAAAGTCTTTTTTTTATTCTTAAACTCCGTTCCAAGTCAAACTAGGCTATCATTTTTGAAACGGAGGGAGTATAACAATATAAACAGGCGGAAGCAAACCAAAACATATATACAAATAAGGATCCCTCCCAGAACCTGGAAGTCACTAGTACAGATCTACCAACAAAACGAGTACAAGTCCCAAAAGTGAACCACTGAAACTAGACTGTCTCGAAAGGTAAAAGACAAGTCTATATATATACAGATGGAGACTGAAATAGTACAGAATGTCGTGTGCTCACCCTCGTCTCCAGATCAGACTGCTCCAAACTCGATCAACATTGGCTACTCGTGCTCGAACCTACATCACGAAAATAGATGCAAAGCATAGCATGAGTACCAAACACTAGGTACCCAGTATGCATCATAGGCTGACTAAACTTGAAAAGTAAAGCAATATGAAAAGAAGGAATAACACAACTAGAGGTCAAGAACGAAAGTCTAAGTAACAATGGAATGCACACGAGTGTAGAAAGAACTAACTAAAGTAATATATAAGCTAACTACACCTAACTGGACCCCCCATAAGCCCAGAAGGCACACTTGTGCGCAAGTTTAAATAAAAACTCAAACGGACCCTCATTAGCTCGACGAGTACAGAGAATAACTATAACTAAGGAGAATAGAACCCAAGGCCAAAGAACATCGAACTAGATGCTCAAAACCAATAAGTAGAATCTGAGGGTACGGAGGTCCGGACACTCACCAAAATTACACAAGTAGCCAATCACAAATATAAGTAACTGAGTCCGTACCTCTAACCGGATGCTCCGCATAAGTATGCGGATGGTCGAGGCCAGACTTTGAACCGGATGCTCTTCCAAAATTATCAATGAAGTCAAGGTCGAGCCTTAAATCCGGAAGCCCGACAAAGGTGTCAACTTTGAATTGCGGAGCGGAACTCATTGTTACTGATGTAGCTCGTGAAGCCGTAACATCAATGAAGTAAGGATAACTATCGCCGGAGCGAACTCCTAGTCTAGCTAAGGCCCAAACTATCAGCCTCTAGTCTGCTACACCAGTCTACAAGGATTTAAGCCGACCGAGCGAGGTCGGGGCAAAACTAAGTCCTGCCGGTTTGCATTTCTAAGGCAAGCTCTAGTCAAACCTAAACGAAGACCCAACATACTTCCAATTAAACCGTACTCCAACATACAAAGCATACAAGTACTCCACATAGCAAAGAAGGTCAATTAATAACATAAAGCATGCTCACAGTTACTCGATAGTTCTCAGAAATAGGTTGAAAACATGATTTTTAACACTTATGCATGATTCAATAACTACCCAACCCAAATCTCAACTAATCAACATGCATTCACATGTTCGAGTTCAATCTAAGAGAAGGAAATCGTAGCCTACCTGTAGGCAGATCACGCCGCGCTCCAAAAATCACTTCTTCGGAGCTTTCCCTTTCCGAATGGCCTTGAAAAGTTGACACACTATAAAAAATAGTCACAATGTTATTACGGTCGTTTAGACACTAAAATCGCAAGAAACTGAGACGGCCTAATTTCGCGGTTAAAACGGGAAAAGTGGGACCTGCATTGAAAATTCCAGGATTAACCCCAAATATAGGTCCTAAACAGCTCTCGGAACTTGTGTTCCAAAGTGGAACACAATTCGGGGCTTGAAACATTCCCAACACGAACATGCAACCAAAAACCCAATAATACGCTAAAATTCAACAACAATGGCAGCAACTATTTACAAGAATTTACCAGAAACGAAGGTTCAACTGCTAAAACCAATCACACCACGACGATCCTCACGAAATCCCCCACAATATACGCTCTTGAATCACCAGATTCGGACCTAAAATGGCCAAGAAATCTTCTTCTAAAAGTTTCCCAAAAGTTGAACTCGAAAATGAGCTATGACAGCAGTTAAAACACAATTTTTTACCTTTAACAAGACTTCAAATGTGAATTCTGTCCACGCCAACACGTTCTCCTCGAAAATTCACTCAAGTTAACCTCCTGAATCGCCCAAATCGGACCTTTATAGCTCAAGGTATCACACTTTTAAGAAGAAGGCTTAAGCTGAGTTGGGGCTTTAATAAAAGACGAAACTGGTCGCTATTAACCCCAAAATTCTGGTCCCTAAAAGGGCTGCACCAGATTTCAGCTTTGGCTAATTTCTTCAAAGTCTCCGACGGTGTGCTCCGAATTCGTTCGGAACCTGATAAAAATAAAACAGATATCTGCCCTACTAAATTCGACATTCCGGACTCAACGGCGCAGTCAAAATTTCCATCAGAGGTCATCTCGATAAAAAGTGGGTCCCACTTCCATCGTCCATTTTAAGTCAAAAAACACACAAGGGCTCGAAAAAATATCGGCAACCTCAGGACACAAAAGAAGGGTCATACTAGACCAAACTCGACATTCCGGAAACCTCAGAATGTTGACTAAAGTCAAACTTAGCCTTAAACTTAAAGTTAAAACGCCTAATCGCACCAACTAGCCTAAGATGACCCTTTCGGAGCTGATGAAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTTATAAGCTCCAAAAACACTAAAACTCACACAATAACCAAACGAACGACCAGCTGACCAAACTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGACGCACAAAAGACAAAACACAGAAATGACCAAGAGGGTCATTACATTACCTTTGATCGACCTTGGAAGTTGGACCCTATTCATATTTCTATGTAGTGTCAAGCTGCCAAGTTTTGTTGTAGATGAGTTTTGTCTTCTGTATTGACAATTCAAATTTGCACTTGGCTGGAAAAGGAAAACTTCAACCTTTTTACCTCGCTTTGCTCCATTTCTTTCAGTTGTCAGTTTGTCTGATGTGAAATGGAAACTCCATTTAGGTGACTAATTGATGCTTGCAGATAACTGGTTTTCCTCTTTCTTAAGCTTCTATGCGACCTAAGGTCCATAAACAACTAAACCGTGTCAGTGAGGGGCAGAGAGGAAAAAATAGGAAAAAATGTATGATATTTATTGAAAGATCTCTAGTTGATGTCACTTGGCAAAAAATAAGAATGGAGCTCCAGTTGTTGCTTTTCACAAGTTGTATATATGGTTGGCAACTTGATAAATGCCAGTAAATGGCTCTGCTGAGTCATTGAAACAATTTATACATACTTTGACACCTGCTTGGTGTCTAGTTATGAAAATTTTGACTTACCAAAAAAGATTCTAAGACTTCTGATACCTTGTTGCTTGCTGACTGTGTGAGAGCTTCACTTTTCTTTGTTGTACTGTCAGTTCCATTTTAAAGTTGCCTAATTCTTCTCTGCAATCCTGGTTAAATTTTTTGTCCTTCACCATTCTATTGAACCACTACTTCAGCTTCTTAGAGAATTGAAGTTGTCAGCCTTTGTATAGATTTCAGATTCTATGTTGACTACTTGATGGCTGTTGTGTGTGACTGATTGTTTCAGTCTTGACATGCATGCGTTAGTTAGTTTCCATGTATTGTTCTGCAACCATGCTACCAAGTCATTCAACAGGCTTTCTATTAATTGGTAATTTACATCCATTTTTTTTCTTCAGGCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAGGTACTATTTGTTGAGCTTTTCTGTGCTTGTTAGTTCTCTGAGTAATTCCCATAGTTTTGTTATTTCATCCAGCATCTTACATTTTGCCTCTGCATTTTTTCTTGTACTGTACAGAGCTACAAAGTTGGAACATTGTCTTGCTTCATCCATGGTATTCATAGAGAATTACAGATCTTCCATGAGAAAAGTTGCTCTCAAACTTTACCTGTTTGTCTCAAAACTTGGGATATATCCAGTACTAGTTTCTAGGTTACATATTGACTTCTGAGCTAGGCAGTTGGATTTATACCTCAAACTAAGAAATCTGAATGCTGCTTGAGTACATAGAGTGATGATTCCATAGAGATTGGTATTTGTTAATAACTAATAACAAACTTCTATCTCTGGCGTCAATGGACTATTGTGGTTTTGCAAGAATGCTTCTGTGCACGATATTTTCTGCTTGCTGTCACTTTGTCCTTAGCACGACTAAGAATTCTAAATAAGGGAGTCTGCTGACTAACCAATTACCTTTGTTAGATGCCCTACTGGGCGAAGGTCTGGCATGTATAGACAAGTAGACATGCCATATCATGGTGCTGTAGAAGACAAGTGATGTCTTGACTCTTCCCTCTCACGGCTTAGATGTAAATGAAGAATTAAATTCATTTTTCGTAACTCTGTATCAGTTTATGGGTTCTTTTCTATACATCCCCATTCACTTTATCAGTTATTGAGACACCTCTATGAAACTTGATTCATGTTTGGCTTGGAGTCTACTGAGTCATGAATACATATTTGATTGACTGTTCTACTACTATTAAGATCTTTTCACTGTCCAATATCACATTTAAGTCACAGCTTGCTAGCTACCAGGCTATACACTGGATTTTCTTTTACCACAGTTCTCCTTTTTCTCACATTTTCCCTCAAATATTTTGTACAGTTATATTTCAATCCAGCAA-CAGTGAAGATGCTAAGCAATCTGAAGGTAACTGCTATATTTGAACACTTCTACAACGTATTATCTGATTGTGTTTGCTGCTTTTGCCGATTTTCTGCTGCATTCTTCAATTACTTTATTGACTCTGGCTCCTCTTCTTTCTTTTCATCATCTGCTACATTTTGATTTTTTGTGGGATAGAGTTACCTGGTCCTGTATTGGTGGGAGGTTGTAGGAACTCTATGGAATTAGTGGAGGTGCGCTAGATCTGGCCAGACACCACATTTGTAAAAATACAATGTCGCTAAATTCGGTTAGCACAATCCAACTTCATCCCTGTATTCGCCATCTCTGGATGAAACCTAAATTTGGATTAACTTCCATACGGTACGAATATCTCCCCAGATCTTTTGGGATTGAAGCGTTACTGTTGTTGCCGTTGTTTCTTGATCCAAATCTGTCTGGATTAGATTCCACAATTTTTGGTTCAGGACTAGACTGAAATTGCCCCCATCTTAATCTGTATTATGGAAGCTGCCAGTGCATAGAACTATTTTCTTTTTGAAATTTCAAGTAATGTGGATTGAAGTCCATGAAGTACTCTTTGTTAATAGCTTGCAGTCTTTAGCTGGTGCTTAATCTAATGAAGGAAGTTGTTTTAGCATCTTTCTAGAATGTCCAAAGTTTTCTGTTAACATCCTTCTTACAGGGCAGAAAAAAAGGACTACTCTTTTTTGTTCACTTGTCTCTCTATTAACCTAAATCCAAATAGTTTTATTAAGGTGGTTATTTCTTTTCAGGAGCCTTAGATGTGCTAAGAACATGGCCCCTTGGATAAATGGGTATAGGCTTTAATTATTTGTGTGCTGGACGGAATTCCTACATGATAATTGATGTCACCTTTTCCCATTCCAGGGAGTGTTGAAAAGAAGTTCAATTCCATTAGAAGCCAGTTCCTTTGGGAAGGAAATGCTAACAGGAAAATTTTGATTTGACCAAATGGCATGAAAAAAAGACAATAAAGGAGGTGGATTGGGTGTTAAAAATTTTAAAGCATCATAACAAGAAGGGGTATTCCTTTGTGTAGTTCTTCTATGAAATTCTCAGGAATGTGCCGAACACCTTTTTATTCATTGTAATCATGCAAAGCAGATATGAATTCTGTTCCTAACTCAGAGTGATATCAGGTATGAATTAGGTGATGCCAAAGAATGTGAGTGATCTATTGAATTGTTGGCAAAATCAGAATGTCGGGAAAATGAAATGCAAATCTGGGAAATGATACCTCTTTGCATCTTTTGTACCCTTTGGTTGGAAAGGACTACACGATGTTTTGAGAATTGGGAGAATCATTTAGCTAGCGTTAAGAATAGTCGTCTTCTTAATCTTTACTTGTGGTGTTGGGTACGTATGGCAGAAGACTTAGATCAGTACATGGATTTTATAGAAGCTTTGAGAATGTAACAGTTGCAGTTGCGCTGTAGTTTGTATGCTTTTAGTACCTTCTTGGTACTTATCGGGAAAAAAATGTGGTTATTTCTTTTTCGATACCTGAGACTTTACATATCAGTTGATGATTTCTCAGTTTCGACATTATACACCAAAGGATATATTTCAGAATACTTTATTGAATATGATGCTATGGTAGAGCTTTTCTTTAATATTTGTTTCTTTGCTGTCAATGTGCAGGTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAGGTTAGTTGTTTCAAACTAGTAAATTAAGCTGGAGGTGCAATATTGATTGTAGGAGCAGGAAAGAGCAAGGCATCCTGTATAAATTCTTGCAGGATGGAAGTTGTATACCCATATAATAAGAGTTATTATGTTACAGTGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAG-CATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATA-CACTGATTTTTGTAAGTGATTCAAACAACCTAACAAGCTACTACTGATTCTATTTTGTTTGTTATTGGAGACGGCCTTAGTAAATACCTGGACATCATTTAAGATACTAGTTTATTACTGGCTAAAGGAGGGGTTTTCTTTTACACAGGTAACTGTGCCTTCTATGG-CCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAGGTATATTAATCATGGCTAATTATCATTTTTCTATTTCTGTATCATCAGAATGTTCTGTGGTTAGATTGGCTCATTATTTTCCACTGCTTTCTTTCCTGGGACAACTATTACTTTTGAATGGATGTATAACTTTTATGTTCCTATACTTGAGGCATTTATCAGTGCCAGTTTACTGCAATATTTGATTCTTAGAAGACTTGGCTCATTTAAGAAATGTCCAAGAACATTTGTCAACGGTAAATTCTGACTTCGAATGCCTTGTACAAGGGAACAAGGAAGATGTATCACAGTAATTTTATTAAGATTCAATATGAAGAGCAGGTCTCTCTTATGATAAAAATGTAACATTGTAATTTAGTTACATTTCCATATGAGAGTACTTGGTATGATGAACATATAAAGGATTTCTTTCAGTTTCACTGTTTGTGCTAGCTTTTTCCTTTCCTTATATTCTAATCCGGCTTGTACTAGGATCTTTATCCTAGAGCAGCATCTGTTGTCCAGTTATAGGACTTCAACTGATGCATGTCAGGTCTTGTCTCTGTAGCAACAGAGATTATGCTAATTTCTCCATTCGTAGAGGACGGTCGGGACTTCTATCAGCACTCTCTTCCTGAACCATCTGACATGTTACAATTTAATTCGCAGAACTTATTTCTCTAT</genome_strand>
        <mrna_strand>GCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAAGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG...................................................................................GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATTTCAATCCAGCAACCAGTGAAGATGCTAAGCAATCTGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG........................................................................................................................................TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCCATTAATCAACTTCGATCCCTTCCTGAAAGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACCACTGATTTTT.........................................................................................................................................GTAACTGTGCCTTCTATGGCCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTATTTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704489" ref_strand="+" ref_description="SGN-E704489 [FA24BG06]">
      <seq>agtgaaggagcccttttacaactcttaatacaaccaaacaaactctttcacaattcccttcctaaatctccaaatttcaactttcactccactcgtctcagctcaactccatccgtcggtcggtgagccggacttatctggatctggccggaatatttgtcttcccgccaattctctcacaggtgagctgaaatactaagcagttgactcatgaagaaaggtatggcagaatgcgctgtctgtcattccaagcttgtttctccatctgtaaaaactatttcaagggcatatgatcgacacagaagcaagatttcatcaaagcaacgtgctctcaatgtcctattggttgtaggagattgtatgctggttggtttacagcctgttttggtatttatgtcgaaagtggatggaaaattcaagtttagtcccgtaagtgtcaacttcttgacagaggcgacaaaagtcgtctttgcaataataatgcttttaatccaggccaggcatcaaaaggttggagaaaagccacttctttcaatatccacatttgtccaggctgcaagaaacaatgtccttctcactgtaccagcactactctatgccataaacaactacctaaagttcatcatgcagttatatttcaatccagcaacagtgaagatgctaagcaatctgaaggttttggttattgcagtgctgttgaaatttatcatgaaaaggcgattttccgtaattcagtgggaggctcttgctttgctgctaattgggataagcattaatcaacttcgatcccttcctgaaggcaccacttctttggctcttccagttaccacaattgcctacatctatacactgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="78043" stop="67496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77743" g_stop="77562" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77561" i_stop="76890" i_length="672">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76889" g_stop="76694" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="378" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76357" g_stop="76241" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="495" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76157" g_stop="76101" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="552" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76100" i_stop="70803" i_length="5298">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70802" g_stop="70725" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="630" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70724" i_stop="69800" i_length="925">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69799" g_stop="69755" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="675" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69754" i_stop="68114" i_length="1641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68113" g_stop="68054" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="735" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67917" g_stop="67796" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="857" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E704489" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77743" e_stop="77562"/>
          <exon e_start="76889" e_stop="76694"/>
          <exon e_start="76357" e_stop="76241"/>
          <exon e_start="76157" e_stop="76101"/>
          <exon e_start="70802" e_stop="70725"/>
          <exon e_start="69799" e_stop="69755"/>
          <exon e_start="68113" e_stop="68054"/>
          <exon e_start="67917" e_stop="67796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGGAGCCCTTTTACAACTCTTAATACAACCAAACAAACTCTTTCACAATTCCCTTCCTAAATCTCCAAATTTCAACTTTCACTCCACTCGTCTCAGCTCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAGGTCACTTCTTCTCTTTTTGCTTATGTTTAATGTTAAAATAAGTTTGATATGTAGATCTATTTCATGTATGGATGCTTGATCCCTCTCAAATTCAATACTATCTGTTGTTATCATGCAAAAAGATTTCATTTTTTTATCCCTTGGATAGTGAGATCTGCGCTTTCTAAATTTCGCATTTTCATCATCTTTGGGACAAGTGAAGTCAGGACTTATTCAGCTGCAGCTGCACTAAGAGTTCACAAAGAACAAGTAGGTATCTTTGTGTATCCATTATAGATGTGTGCATGCTATCAAGTACCTCACACCCGTGTTATACCCATTTGACATCTAGGGGATGAATGAATGATACATGCAATGTACATATTTGTTATGCGGTTTGGCTTGATGGTAGTTTCATATCAAGGTTGAGAAAATGTAGGATCTGGATGACTTGTGCATGTACTTCACTTGATGTGTTAAAGCTGTTTGACCAGTGTAGCATTAAATGGCATATGAGATAGTCTTGAAAAGATGCAAATCAGCTGATATAATTCTGATGCTTAAATAATATTTGACAATCACACTGCCAGAACTTTTTCTTACTCTATTGCCTTACTTAAATTTTTTGTTTGTTTACCCTTCTATATTTCTGTTCTGATATATGGTTGCAATCAACATGTTTCTTGTATTTAGGTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAGGTAGCGGTCCTTTTCAAATGTTCTAATTGTTTATTCGTATTCTTCTCAGTTATCAGAAAAAAAGTTCTTAATTTTTGCATGCAAATGATAATATTCTACCAGTAAAGTGTACACTCACTAAGCTTCTTGATTTTGTGTGGATCGGTCTCTTTCCATAACAATCACCATTGATTTTTTTTTTAATTTAAAAGTAGCTTCTGCTTTTCTATCGAATATAGTTAATTATAGCTGTCACCTCATATCTTTTACCACTTGTTTCCATCAGCAAAACATTTAAATTTGCTGCTTAAAAATGAGAAAGACTTGTCTCACCCGGTATTTTATCCCCCTTTTCAGCCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAGGTACACTATTTTTATGTTTTTTGTTTACTTGATTTTTTTTTCGATAGTTCAATTTCATGTTTCTTGTTGGAATGTTTCTGCAGGCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAGGTAAAATGTCATTGGTGTGAGTGTTGTAACTGCTCTTAGTTCTCCTGGGTGGGTTGAAACCTAGTTTATTGCTCATCATGTCCTTGTAATAGCAAGATTCTTGCATATGTTCTTTATGATAATTTAAAGTTTGTAAGTGATGTAATATCTGAGGAGCCAGTCTCTAAATTGAGTCCTCTTCTTACATGATTAACCTATATTCATGTATGACACTAAGGATTTGAAAGATGCCTACCCTGGATGACTGTCTTGGACAAGAGTATTGTTGCTGTTGGACGCAGAAAGCTTTAAACAGCTTTCCGAAGTATCAATTTAATTTCTGTGTAAGATCCTGCACAGAAGAAAGATATCATGAGTTAAATCCCACTGGAAACAAAATCATTAGGTGGTTTCTTCCCATTGTCTGCCAAAGTTGTTACTGATGGGTGGTGGGAGGTGGCAGGTATCCCGTGGAACTAGTCGAGGTGTGCACAAGCTGGCCCAGACACCACAATTTATTTTCCCTAAAAAATAGATATAATGAGTTGTATAAAAGGGAAAAGTTTTACCACACCTCTTATGGTGTTCGCCAAATCTCCCAGGTGGGGAACTACACATACAAGAAGGAAATTTGAGCTTGATGCAAATGGATGGGTGTCAAGAAAGATAGGATGTTATGGTTTAAGGGAACAGCCATCGTGAAGATCTGCTAATGATATTATGCAGTAAAGAAAAGGTGCAAGCTGGACATTGCACTTGCTTGGGGCATGCTTCGTATAGTTGATATTGGATAAAAGAACTAAATGCTTCTCTTCACTGGTATAGTCTGCTGAAAAGAAAGTCCAAGAACTACTGCAATTCCTCTTGTGTATATCAGGACACCTTCATTTATTCATTCCACAGACGAGTCAATATGTTGCTGTGAGTTCTACCTTTCTTCATATCAAGATCCAGGCTCTAAAGTATGAGTATTATCTCCATAAGAGTGAAACAGGAATTAACATAAGTGGAGAATAATAGCAATCCTGCTCTCTTCTTTTCGGTTTCTGTTTGTAAAGTTCTTCATCAGCATTTTTAGATGCTGATGTTTTCGGAATGAATGCAAGTTACCTTATGAAAAAGAAAACATAAGTCGAGAATATGATTATATTGAGTTGATCCAAAATGTGGAGAATAAGGATGAAGACTCTGAGTTGATCCGGAGATACAGAAACTTTTATAGTATTGTCAAAGAATAGTTTTATTGGGACAAATGCAAAAACAGGCTGAACATTGAGATAATGTGAAACGACCTTGGAAATTAAAACCTTCTCATATATCTACATACTGTTCGAGCTGCAAGTTTTGCCGTGTCACGACCCAATTTCTCGAGTCATGATGGCACCTACTATAACCCACCAGTAGGTAACCCGACCCGTAACCCGGAACAACGCACAATGGGTCTGAGGGTAGAAACTAAACAAGAGTAGGCAAAATTTACTACTCCCTCCGTTTAAAAACGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCTTTCCTTTTTGGCAACACTTTATCTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTATATGGCATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAGAAAGTCTTTTTTTTATTCTTAAACTCCGTTCCAAGTCAAACTAGGCTATCATTTTTGAAACGGAGGGAGTATAACAATATAAACAGGCGGAAGCAAACCAAAACATATATACAAATAAGGATCCCTCCCAGAACCTGGAAGTCACTAGTACAGATCTACCAACAAAACGAGTACAAGTCCCAAAAGTGAACCACTGAAACTAGACTGTCTCGAAAGGTAAAAGACAAGTCTATATATATACAGATGGAGACTGAAATAGTACAGAATGTCGTGTGCTCACCCTCGTCTCCAGATCAGACTGCTCCAAACTCGATCAACATTGGCTACTCGTGCTCGAACCTACATCACGAAAATAGATGCAAAGCATAGCATGAGTACCAAACACTAGGTACCCAGTATGCATCATAGGCTGACTAAACTTGAAAAGTAAAGCAATATGAAAAGAAGGAATAACACAACTAGAGGTCAAGAACGAAAGTCTAAGTAACAATGGAATGCACACGAGTGTAGAAAGAACTAACTAAAGTAATATATAAGCTAACTACACCTAACTGGACCCCCCATAAGCCCAGAAGGCACACTTGTGCGCAAGTTTAAATAAAAACTCAAACGGACCCTCATTAGCTCGACGAGTACAGAGAATAACTATAACTAAGGAGAATAGAACCCAAGGCCAAAGAACATCGAACTAGATGCTCAAAACCAATAAGTAGAATCTGAGGGTACGGAGGTCCGGACACTCACCAAAATTACACAAGTAGCCAATCACAAATATAAGTAACTGAGTCCGTACCTCTAACCGGATGCTCCGCATAAGTATGCGGATGGTCGAGGCCAGACTTTGAACCGGATGCTCTTCCAAAATTATCAATGAAGTCAAGGTCGAGCCTTAAATCCGGAAGCCCGACAAAGGTGTCAACTTTGAATTGCGGAGCGGAACTCATTGTTACTGATGTAGCTCGTGAAGCCGTAACATCAATGAAGTAAGGATAACTATCGCCGGAGCGAACTCCTAGTCTAGCTAAGGCCCAAACTATCAGCCTCTAGTCTGCTACACCAGTCTACAAGGATTTAAGCCGACCGAGCGAGGTCGGGGCAAAACTAAGTCCTGCCGGTTTGCATTTCTAAGGCAAGCTCTAGTCAAACCTAAACGAAGACCCAACATACTTCCAATTAAACCGTACTCCAACATACAAAGCATACAAGTACTCCACATAGCAAAGAAGGTCAATTAATAACATAAAGCATGCTCACAGTTACTCGATAGTTCTCAGAAATAGGTTGAAAACATGATTTTTAACACTTATGCATGATTCAATAACTACCCAACCCAAATCTCAACTAATCAACATGCATTCACATGTTCGAGTTCAATCTAAGAGAAGGAAATCGTAGCCTACCTGTAGGCAGATCACGCCGCGCTCCAAAAATCACTTCTTCGGAGCTTTCCCTTTCCGAATGGCCTTGAAAAGTTGACACACTATAAAAAATAGTCACAATGTTATTACGGTCGTTTAGACACTAAAATCGCAAGAAACTGAGACGGCCTAATTTCGCGGTTAAAACGGGAAAAGTGGGACCTGCATTGAAAATTCCAGGATTAACCCCAAATATAGGTCCTAAACAGCTCTCGGAACTTGTGTTCCAAAGTGGAACACAATTCGGGGCTTGAAACATTCCCAACACGAACATGCAACCAAAAACCCAATAATACGCTAAAATTCAACAACAATGGCAGCAACTATTTACAAGAATTTACCAGAAACGAAGGTTCAACTGCTAAAACCAATCACACCACGACGATCCTCACGAAATCCCCCACAATATACGCTCTTGAATCACCAGATTCGGACCTAAAATGGCCAAGAAATCTTCTTCTAAAAGTTTCCCAAAAGTTGAACTCGAAAATGAGCTATGACAGCAGTTAAAACACAATTTTTTACCTTTAACAAGACTTCAAATGTGAATTCTGTCCACGCCAACACGTTCTCCTCGAAAATTCACTCAAGTTAACCTCCTGAATCGCCCAAATCGGACCTTTATAGCTCAAGGTATCACACTTTTAAGAAGAAGGCTTAAGCTGAGTTGGGGCTTTAATAAAAGACGAAACTGGTCGCTATTAACCCCAAAATTCTGGTCCCTAAAAGGGCTGCACCAGATTTCAGCTTTGGCTAATTTCTTCAAAGTCTCCGACGGTGTGCTCCGAATTCGTTCGGAACCTGATAAAAATAAAACAGATATCTGCCCTACTAAATTCGACATTCCGGACTCAACGGCGCAGTCAAAATTTCCATCAGAGGTCATCTCGATAAAAAGTGGGTCCCACTTCCATCGTCCATTTTAAGTCAAAAAACACACAAGGGCTCGAAAAAATATCGGCAACCTCAGGACACAAAAGAAGGGTCATACTAGACCAAACTCGACATTCCGGAAACCTCAGAATGTTGACTAAAGTCAAACTTAGCCTTAAACTTAAAGTTAAAACGCCTAATCGCACCAACTAGCCTAAGATGACCCTTTCGGAGCTGATGAAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTTATAAGCTCCAAAAACACTAAAACTCACACAATAACCAAACGAACGACCAGCTGACCAAACTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGACGCACAAAAGACAAAACACAGAAATGACCAAGAGGGTCATTACATTACCTTTGATCGACCTTGGAAGTTGGACCCTATTCATATTTCTATGTAGTGTCAAGCTGCCAAGTTTTGTTGTAGATGAGTTTTGTCTTCTGTATTGACAATTCAAATTTGCACTTGGCTGGAAAAGGAAAACTTCAACCTTTTTACCTCGCTTTGCTCCATTTCTTTCAGTTGTCAGTTTGTCTGATGTGAAATGGAAACTCCATTTAGGTGACTAATTGATGCTTGCAGATAACTGGTTTTCCTCTTTCTTAAGCTTCTATGCGACCTAAGGTCCATAAACAACTAAACCGTGTCAGTGAGGGGCAGAGAGGAAAAAATAGGAAAAAATGTATGATATTTATTGAAAGATCTCTAGTTGATGTCACTTGGCAAAAAATAAGAATGGAGCTCCAGTTGTTGCTTTTCACAAGTTGTATATATGGTTGGCAACTTGATAAATGCCAGTAAATGGCTCTGCTGAGTCATTGAAACAATTTATACATACTTTGACACCTGCTTGGTGTCTAGTTATGAAAATTTTGACTTACCAAAAAAGATTCTAAGACTTCTGATACCTTGTTGCTTGCTGACTGTGTGAGAGCTTCACTTTTCTTTGTTGTACTGTCAGTTCCATTTTAAAGTTGCCTAATTCTTCTCTGCAATCCTGGTTAAATTTTTTGTCCTTCACCATTCTATTGAACCACTACTTCAGCTTCTTAGAGAATTGAAGTTGTCAGCCTTTGTATAGATTTCAGATTCTATGTTGACTACTTGATGGCTGTTGTGTGTGACTGATTGTTTCAGTCTTGACATGCATGCGTTAGTTAGTTTCCATGTATTGTTCTGCAACCATGCTACCAAGTCATTCAACAGGCTTTCTATTAATTGGTAATTTACATCCATTTTTTTTCTTCAGGCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAGGTACTATTTGTTGAGCTTTTCTGTGCTTGTTAGTTCTCTGAGTAATTCCCATAGTTTTGTTATTTCATCCAGCATCTTACATTTTGCCTCTGCATTTTTTCTTGTACTGTACAGAGCTACAAAGTTGGAACATTGTCTTGCTTCATCCATGGTATTCATAGAGAATTACAGATCTTCCATGAGAAAAGTTGCTCTCAAACTTTACCTGTTTGTCTCAAAACTTGGGATATATCCAGTACTAGTTTCTAGGTTACATATTGACTTCTGAGCTAGGCAGTTGGATTTATACCTCAAACTAAGAAATCTGAATGCTGCTTGAGTACATAGAGTGATGATTCCATAGAGATTGGTATTTGTTAATAACTAATAACAAACTTCTATCTCTGGCGTCAATGGACTATTGTGGTTTTGCAAGAATGCTTCTGTGCACGATATTTTCTGCTTGCTGTCACTTTGTCCTTAGCACGACTAAGAATTCTAAATAAGGGAGTCTGCTGACTAACCAATTACCTTTGTTAGATGCCCTACTGGGCGAAGGTCTGGCATGTATAGACAAGTAGACATGCCATATCATGGTGCTGTAGAAGACAAGTGATGTCTTGACTCTTCCCTCTCACGGCTTAGATGTAAATGAAGAATTAAATTCATTTTTCGTAACTCTGTATCAGTTTATGGGTTCTTTTCTATACATCCCCATTCACTTTATCAGTTATTGAGACACCTCTATGAAACTTGATTCATGTTTGGCTTGGAGTCTACTGAGTCATGAATACATATTTGATTGACTGTTCTACTACTATTAAGATCTTTTCACTGTCCAATATCACATTTAAGTCACAGCTTGCTAGCTACCAGGCTATACACTGGATTTTCTTTTACCACAGTTCTCCTTTTTCTCACATTTTCCCTCAAATATTTTGTACAGTTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAGGTAACTGCTATATTTGAACACTTCTACAACGTATTATCTGATTGTGTTTGCTGCTTTTGCCGATTTTCTGCTGCATTCTTCAATTACTTTATTGACTCTGGCTCCTCTTCTTTCTTTTCATCATCTGCTACATTTTGATTTTTTGTGGGATAGAGTTACCTGGTCCTGTATTGGTGGGAGGTTGTAGGAACTCTATGGAATTAGTGGAGGTGCGCTAGATCTGGCCAGACACCACATTTGTAAAAATACAATGTCGCTAAATTCGGTTAGCACAATCCAACTTCATCCCTGTATTCGCCATCTCTGGATGAAACCTAAATTTGGATTAACTTCCATACGGTACGAATATCTCCCCAGATCTTTTGGGATTGAAGCGTTACTGTTGTTGCCGTTGTTTCTTGATCCAAATCTGTCTGGATTAGATTCCACAATTTTTGGTTCAGGACTAGACTGAAATTGCCCCCATCTTAATCTGTATTATGGAAGCTGCCAGTGCATAGAACTATTTTCTTTTTGAAATTTCAAGTAATGTGGATTGAAGTCCATGAAGTACTCTTTGTTAATAGCTTGCAGTCTTTAGCTGGTGCTTAATCTAATGAAGGAAGTTGTTTTAGCATCTTTCTAGAATGTCCAAAGTTTTCTGTTAACATCCTTCTTACAGGGCAGAAAAAAAGGACTACTCTTTTTTGTTCACTTGTCTCTCTATTAACCTAAATCCAAATAGTTTTATTAAGGTGGTTATTTCTTTTCAGGAGCCTTAGATGTGCTAAGAACATGGCCCCTTGGATAAATGGGTATAGGCTTTAATTATTTGTGTGCTGGACGGAATTCCTACATGATAATTGATGTCACCTTTTCCCATTCCAGGGAGTGTTGAAAAGAAGTTCAATTCCATTAGAAGCCAGTTCCTTTGGGAAGGAAATGCTAACAGGAAAATTTTGATTTGACCAAATGGCATGAAAAAAAGACAATAAAGGAGGTGGATTGGGTGTTAAAAATTTTAAAGCATCATAACAAGAAGGGGTATTCCTTTGTGTAGTTCTTCTATGAAATTCTCAGGAATGTGCCGAACACCTTTTTATTCATTGTAATCATGCAAAGCAGATATGAATTCTGTTCCTAACTCAGAGTGATATCAGGTATGAATTAGGTGATGCCAAAGAATGTGAGTGATCTATTGAATTGTTGGCAAAATCAGAATGTCGGGAAAATGAAATGCAAATCTGGGAAATGATACCTCTTTGCATCTTTTGTACCCTTTGGTTGGAAAGGACTACACGATGTTTTGAGAATTGGGAGAATCATTTAGCTAGCGTTAAGAATAGTCGTCTTCTTAATCTTTACTTGTGGTGTTGGGTACGTATGGCAGAAGACTTAGATCAGTACATGGATTTTATAGAAGCTTTGAGAATGTAACAGTTGCAGTTGCGCTGTAGTTTGTATGCTTTTAGTACCTTCTTGGTACTTATCGGGAAAAAAATGTGGTTATTTCTTTTTCGATACCTGAGACTTTACATATCAGTTGATGATTTCTCAGTTTCGACATTATACACCAAAGGATATATTTCAGAATACTTTATTGAATATGATGCTATGGTAGAGCTTTTCTTTAATATTTGTTTCTTTGCTGTCAATGTGCAGGTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAGGTTAGTTGTTTCAAACTAGTAAATTAAGCTGGAGGTGCAATATTGATTGTAGGAGCAGGAAAGAGCAAGGCATCCTGTATAAATTCTTGCAGGATGGAAGTTGTATACCCATATAATAAGAGTTATTATGTTACAGTGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTT</genome_strand>
        <mrna_strand>AGTGAAGGAGCCCTTTTACAACTCTTAATACAACCAAACAAACTCTTTCACAATTCCCTTCCTAAATCTCCAAATTTCAACTTTCACTCCACTCGTCTCAGCTCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAAAGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTAAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG...................................................................................GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGAAACAATGTCCTTCTCACTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG........................................................................................................................................TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467407" ref_strand="+" ref_description="SGN-E467407 [cSTB-48-N19]">
      <seq>ttttagtatttatgtcgaaagtggatggaaaattcaagtttagtcccgtaagtgtcaacttcttgacagaggcgacgaaagtcgtctttgcaataataatgcttttaatccaggccaggcatcaaaaggttggagaaaagccacttctttcactatccacatttgtacaggcagcacgaaacaatgtgcttcttgctgtaccagcactactctatgccataaataactacctaaagttcatcatgcagttatatttcaacccagcaacagtgaagatgctaagtaatctgaaggttttggttattgcagtgctgttgaaatttatcatgaaacggcgattttccgtaattcagtgggaggctcttgctttgttgctaattgggataagcattaatcaacttcgatcccttcctgaagacactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="76653" stop="67546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76353" g_stop="76241" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76157" g_stop="76101" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="170" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76100" i_stop="70803" i_length="5298">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70802" g_stop="70725" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="248" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70724" i_stop="69800" i_length="925">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69799" g_stop="69755" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="293" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69754" i_stop="68114" i_length="1641">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68113" g_stop="68054" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="353" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136">
            <donor d_prob="0.948" d_score="0.98"/>
            <acceptor a_prob="0.606" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67917" g_stop="67846" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="425" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E467407" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76353" e_stop="76241"/>
          <exon e_start="76157" e_stop="76101"/>
          <exon e_start="70802" e_stop="70725"/>
          <exon e_start="69799" e_stop="69755"/>
          <exon e_start="68113" e_stop="68054"/>
          <exon e_start="67917" e_stop="67846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAGGTACACTATTTTTATGTTTTTTGTTTACTTGATTTTTTTTTCGATAGTTCAATTTCATGTTTCTTGTTGGAATGTTTCTGCAGGCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAGGTAAAATGTCATTGGTGTGAGTGTTGTAACTGCTCTTAGTTCTCCTGGGTGGGTTGAAACCTAGTTTATTGCTCATCATGTCCTTGTAATAGCAAGATTCTTGCATATGTTCTTTATGATAATTTAAAGTTTGTAAGTGATGTAATATCTGAGGAGCCAGTCTCTAAATTGAGTCCTCTTCTTACATGATTAACCTATATTCATGTATGACACTAAGGATTTGAAAGATGCCTACCCTGGATGACTGTCTTGGACAAGAGTATTGTTGCTGTTGGACGCAGAAAGCTTTAAACAGCTTTCCGAAGTATCAATTTAATTTCTGTGTAAGATCCTGCACAGAAGAAAGATATCATGAGTTAAATCCCACTGGAAACAAAATCATTAGGTGGTTTCTTCCCATTGTCTGCCAAAGTTGTTACTGATGGGTGGTGGGAGGTGGCAGGTATCCCGTGGAACTAGTCGAGGTGTGCACAAGCTGGCCCAGACACCACAATTTATTTTCCCTAAAAAATAGATATAATGAGTTGTATAAAAGGGAAAAGTTTTACCACACCTCTTATGGTGTTCGCCAAATCTCCCAGGTGGGGAACTACACATACAAGAAGGAAATTTGAGCTTGATGCAAATGGATGGGTGTCAAGAAAGATAGGATGTTATGGTTTAAGGGAACAGCCATCGTGAAGATCTGCTAATGATATTATGCAGTAAAGAAAAGGTGCAAGCTGGACATTGCACTTGCTTGGGGCATGCTTCGTATAGTTGATATTGGATAAAAGAACTAAATGCTTCTCTTCACTGGTATAGTCTGCTGAAAAGAAAGTCCAAGAACTACTGCAATTCCTCTTGTGTATATCAGGACACCTTCATTTATTCATTCCACAGACGAGTCAATATGTTGCTGTGAGTTCTACCTTTCTTCATATCAAGATCCAGGCTCTAAAGTATGAGTATTATCTCCATAAGAGTGAAACAGGAATTAACATAAGTGGAGAATAATAGCAATCCTGCTCTCTTCTTTTCGGTTTCTGTTTGTAAAGTTCTTCATCAGCATTTTTAGATGCTGATGTTTTCGGAATGAATGCAAGTTACCTTATGAAAAAGAAAACATAAGTCGAGAATATGATTATATTGAGTTGATCCAAAATGTGGAGAATAAGGATGAAGACTCTGAGTTGATCCGGAGATACAGAAACTTTTATAGTATTGTCAAAGAATAGTTTTATTGGGACAAATGCAAAAACAGGCTGAACATTGAGATAATGTGAAACGACCTTGGAAATTAAAACCTTCTCATATATCTACATACTGTTCGAGCTGCAAGTTTTGCCGTGTCACGACCCAATTTCTCGAGTCATGATGGCACCTACTATAACCCACCAGTAGGTAACCCGACCCGTAACCCGGAACAACGCACAATGGGTCTGAGGGTAGAAACTAAACAAGAGTAGGCAAAATTTACTACTCCCTCCGTTTAAAAACGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCTTTCCTTTTTGGCAACACTTTATCTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTATATGGCATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAGAAAGTCTTTTTTTTATTCTTAAACTCCGTTCCAAGTCAAACTAGGCTATCATTTTTGAAACGGAGGGAGTATAACAATATAAACAGGCGGAAGCAAACCAAAACATATATACAAATAAGGATCCCTCCCAGAACCTGGAAGTCACTAGTACAGATCTACCAACAAAACGAGTACAAGTCCCAAAAGTGAACCACTGAAACTAGACTGTCTCGAAAGGTAAAAGACAAGTCTATATATATACAGATGGAGACTGAAATAGTACAGAATGTCGTGTGCTCACCCTCGTCTCCAGATCAGACTGCTCCAAACTCGATCAACATTGGCTACTCGTGCTCGAACCTACATCACGAAAATAGATGCAAAGCATAGCATGAGTACCAAACACTAGGTACCCAGTATGCATCATAGGCTGACTAAACTTGAAAAGTAAAGCAATATGAAAAGAAGGAATAACACAACTAGAGGTCAAGAACGAAAGTCTAAGTAACAATGGAATGCACACGAGTGTAGAAAGAACTAACTAAAGTAATATATAAGCTAACTACACCTAACTGGACCCCCCATAAGCCCAGAAGGCACACTTGTGCGCAAGTTTAAATAAAAACTCAAACGGACCCTCATTAGCTCGACGAGTACAGAGAATAACTATAACTAAGGAGAATAGAACCCAAGGCCAAAGAACATCGAACTAGATGCTCAAAACCAATAAGTAGAATCTGAGGGTACGGAGGTCCGGACACTCACCAAAATTACACAAGTAGCCAATCACAAATATAAGTAACTGAGTCCGTACCTCTAACCGGATGCTCCGCATAAGTATGCGGATGGTCGAGGCCAGACTTTGAACCGGATGCTCTTCCAAAATTATCAATGAAGTCAAGGTCGAGCCTTAAATCCGGAAGCCCGACAAAGGTGTCAACTTTGAATTGCGGAGCGGAACTCATTGTTACTGATGTAGCTCGTGAAGCCGTAACATCAATGAAGTAAGGATAACTATCGCCGGAGCGAACTCCTAGTCTAGCTAAGGCCCAAACTATCAGCCTCTAGTCTGCTACACCAGTCTACAAGGATTTAAGCCGACCGAGCGAGGTCGGGGCAAAACTAAGTCCTGCCGGTTTGCATTTCTAAGGCAAGCTCTAGTCAAACCTAAACGAAGACCCAACATACTTCCAATTAAACCGTACTCCAACATACAAAGCATACAAGTACTCCACATAGCAAAGAAGGTCAATTAATAACATAAAGCATGCTCACAGTTACTCGATAGTTCTCAGAAATAGGTTGAAAACATGATTTTTAACACTTATGCATGATTCAATAACTACCCAACCCAAATCTCAACTAATCAACATGCATTCACATGTTCGAGTTCAATCTAAGAGAAGGAAATCGTAGCCTACCTGTAGGCAGATCACGCCGCGCTCCAAAAATCACTTCTTCGGAGCTTTCCCTTTCCGAATGGCCTTGAAAAGTTGACACACTATAAAAAATAGTCACAATGTTATTACGGTCGTTTAGACACTAAAATCGCAAGAAACTGAGACGGCCTAATTTCGCGGTTAAAACGGGAAAAGTGGGACCTGCATTGAAAATTCCAGGATTAACCCCAAATATAGGTCCTAAACAGCTCTCGGAACTTGTGTTCCAAAGTGGAACACAATTCGGGGCTTGAAACATTCCCAACACGAACATGCAACCAAAAACCCAATAATACGCTAAAATTCAACAACAATGGCAGCAACTATTTACAAGAATTTACCAGAAACGAAGGTTCAACTGCTAAAACCAATCACACCACGACGATCCTCACGAAATCCCCCACAATATACGCTCTTGAATCACCAGATTCGGACCTAAAATGGCCAAGAAATCTTCTTCTAAAAGTTTCCCAAAAGTTGAACTCGAAAATGAGCTATGACAGCAGTTAAAACACAATTTTTTACCTTTAACAAGACTTCAAATGTGAATTCTGTCCACGCCAACACGTTCTCCTCGAAAATTCACTCAAGTTAACCTCCTGAATCGCCCAAATCGGACCTTTATAGCTCAAGGTATCACACTTTTAAGAAGAAGGCTTAAGCTGAGTTGGGGCTTTAATAAAAGACGAAACTGGTCGCTATTAACCCCAAAATTCTGGTCCCTAAAAGGGCTGCACCAGATTTCAGCTTTGGCTAATTTCTTCAAAGTCTCCGACGGTGTGCTCCGAATTCGTTCGGAACCTGATAAAAATAAAACAGATATCTGCCCTACTAAATTCGACATTCCGGACTCAACGGCGCAGTCAAAATTTCCATCAGAGGTCATCTCGATAAAAAGTGGGTCCCACTTCCATCGTCCATTTTAAGTCAAAAAACACACAAGGGCTCGAAAAAATATCGGCAACCTCAGGACACAAAAGAAGGGTCATACTAGACCAAACTCGACATTCCGGAAACCTCAGAATGTTGACTAAAGTCAAACTTAGCCTTAAACTTAAAGTTAAAACGCCTAATCGCACCAACTAGCCTAAGATGACCCTTTCGGAGCTGATGAAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTTATAAGCTCCAAAAACACTAAAACTCACACAATAACCAAACGAACGACCAGCTGACCAAACTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGACGCACAAAAGACAAAACACAGAAATGACCAAGAGGGTCATTACATTACCTTTGATCGACCTTGGAAGTTGGACCCTATTCATATTTCTATGTAGTGTCAAGCTGCCAAGTTTTGTTGTAGATGAGTTTTGTCTTCTGTATTGACAATTCAAATTTGCACTTGGCTGGAAAAGGAAAACTTCAACCTTTTTACCTCGCTTTGCTCCATTTCTTTCAGTTGTCAGTTTGTCTGATGTGAAATGGAAACTCCATTTAGGTGACTAATTGATGCTTGCAGATAACTGGTTTTCCTCTTTCTTAAGCTTCTATGCGACCTAAGGTCCATAAACAACTAAACCGTGTCAGTGAGGGGCAGAGAGGAAAAAATAGGAAAAAATGTATGATATTTATTGAAAGATCTCTAGTTGATGTCACTTGGCAAAAAATAAGAATGGAGCTCCAGTTGTTGCTTTTCACAAGTTGTATATATGGTTGGCAACTTGATAAATGCCAGTAAATGGCTCTGCTGAGTCATTGAAACAATTTATACATACTTTGACACCTGCTTGGTGTCTAGTTATGAAAATTTTGACTTACCAAAAAAGATTCTAAGACTTCTGATACCTTGTTGCTTGCTGACTGTGTGAGAGCTTCACTTTTCTTTGTTGTACTGTCAGTTCCATTTTAAAGTTGCCTAATTCTTCTCTGCAATCCTGGTTAAATTTTTTGTCCTTCACCATTCTATTGAACCACTACTTCAGCTTCTTAGAGAATTGAAGTTGTCAGCCTTTGTATAGATTTCAGATTCTATGTTGACTACTTGATGGCTGTTGTGTGTGACTGATTGTTTCAGTCTTGACATGCATGCGTTAGTTAGTTTCCATGTATTGTTCTGCAACCATGCTACCAAGTCATTCAACAGGCTTTCTATTAATTGGTAATTTACATCCATTTTTTTTCTTCAGGCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAGGTACTATTTGTTGAGCTTTTCTGTGCTTGTTAGTTCTCTGAGTAATTCCCATAGTTTTGTTATTTCATCCAGCATCTTACATTTTGCCTCTGCATTTTTTCTTGTACTGTACAGAGCTACAAAGTTGGAACATTGTCTTGCTTCATCCATGGTATTCATAGAGAATTACAGATCTTCCATGAGAAAAGTTGCTCTCAAACTTTACCTGTTTGTCTCAAAACTTGGGATATATCCAGTACTAGTTTCTAGGTTACATATTGACTTCTGAGCTAGGCAGTTGGATTTATACCTCAAACTAAGAAATCTGAATGCTGCTTGAGTACATAGAGTGATGATTCCATAGAGATTGGTATTTGTTAATAACTAATAACAAACTTCTATCTCTGGCGTCAATGGACTATTGTGGTTTTGCAAGAATGCTTCTGTGCACGATATTTTCTGCTTGCTGTCACTTTGTCCTTAGCACGACTAAGAATTCTAAATAAGGGAGTCTGCTGACTAACCAATTACCTTTGTTAGATGCCCTACTGGGCGAAGGTCTGGCATGTATAGACAAGTAGACATGCCATATCATGGTGCTGTAGAAGACAAGTGATGTCTTGACTCTTCCCTCTCACGGCTTAGATGTAAATGAAGAATTAAATTCATTTTTCGTAACTCTGTATCAGTTTATGGGTTCTTTTCTATACATCCCCATTCACTTTATCAGTTATTGAGACACCTCTATGAAACTTGATTCATGTTTGGCTTGGAGTCTACTGAGTCATGAATACATATTTGATTGACTGTTCTACTACTATTAAGATCTTTTCACTGTCCAATATCACATTTAAGTCACAGCTTGCTAGCTACCAGGCTATACACTGGATTTTCTTTTACCACAGTTCTCCTTTTTCTCACATTTTCCCTCAAATATTTTGTACAGTTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAGGTAACTGCTATATTTGAACACTTCTACAACGTATTATCTGATTGTGTTTGCTGCTTTTGCCGATTTTCTGCTGCATTCTTCAATTACTTTATTGACTCTGGCTCCTCTTCTTTCTTTTCATCATCTGCTACATTTTGATTTTTTGTGGGATAGAGTTACCTGGTCCTGTATTGGTGGGAGGTTGTAGGAACTCTATGGAATTAGTGGAGGTGCGCTAGATCTGGCCAGACACCACATTTGTAAAAATACAATGTCGCTAAATTCGGTTAGCACAATCCAACTTCATCCCTGTATTCGCCATCTCTGGATGAAACCTAAATTTGGATTAACTTCCATACGGTACGAATATCTCCCCAGATCTTTTGGGATTGAAGCGTTACTGTTGTTGCCGTTGTTTCTTGATCCAAATCTGTCTGGATTAGATTCCACAATTTTTGGTTCAGGACTAGACTGAAATTGCCCCCATCTTAATCTGTATTATGGAAGCTGCCAGTGCATAGAACTATTTTCTTTTTGAAATTTCAAGTAATGTGGATTGAAGTCCATGAAGTACTCTTTGTTAATAGCTTGCAGTCTTTAGCTGGTGCTTAATCTAATGAAGGAAGTTGTTTTAGCATCTTTCTAGAATGTCCAAAGTTTTCTGTTAACATCCTTCTTACAGGGCAGAAAAAAAGGACTACTCTTTTTTGTTCACTTGTCTCTCTATTAACCTAAATCCAAATAGTTTTATTAAGGTGGTTATTTCTTTTCAGGAGCCTTAGATGTGCTAAGAACATGGCCCCTTGGATAAATGGGTATAGGCTTTAATTATTTGTGTGCTGGACGGAATTCCTACATGATAATTGATGTCACCTTTTCCCATTCCAGGGAGTGTTGAAAAGAAGTTCAATTCCATTAGAAGCCAGTTCCTTTGGGAAGGAAATGCTAACAGGAAAATTTTGATTTGACCAAATGGCATGAAAAAAAGACAATAAAGGAGGTGGATTGGGTGTTAAAAATTTTAAAGCATCATAACAAGAAGGGGTATTCCTTTGTGTAGTTCTTCTATGAAATTCTCAGGAATGTGCCGAACACCTTTTTATTCATTGTAATCATGCAAAGCAGATATGAATTCTGTTCCTAACTCAGAGTGATATCAGGTATGAATTAGGTGATGCCAAAGAATGTGAGTGATCTATTGAATTGTTGGCAAAATCAGAATGTCGGGAAAATGAAATGCAAATCTGGGAAATGATACCTCTTTGCATCTTTTGTACCCTTTGGTTGGAAAGGACTACACGATGTTTTGAGAATTGGGAGAATCATTTAGCTAGCGTTAAGAATAGTCGTCTTCTTAATCTTTACTTGTGGTGTTGGGTACGTATGGCAGAAGACTTAGATCAGTACATGGATTTTATAGAAGCTTTGAGAATGTAACAGTTGCAGTTGCGCTGTAGTTTGTATGCTTTTAGTACCTTCTTGGTACTTATCGGGAAAAAAATGTGGTTATTTCTTTTTCGATACCTGAGACTTTACATATCAGTTGATGATTTCTCAGTTTCGACATTATACACCAAAGGATATATTTCAGAATACTTTATTGAATATGATGCTATGGTAGAGCTTTTCTTTAATATTTGTTTCTTTGCTGTCAATGTGCAGGTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAGGTTAGTTGTTTCAAACTAGTAAATTAAGCTGGAGGTGCAATATTGATTGTAGGAGCAGGAAAGAGCAAGGCATCCTGTATAAATTCTTGCAGGATGGAAGTTGTATACCCATATAATAAGAGTTATTATGTTACAGTGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACT</genome_strand>
        <mrna_strand>TTTTAGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACGAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG...................................................................................GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCACTATCCACATTTGTACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCACGAAACAATGTGCTTCTTGCTGTACCAGCACTACTCTATGCCATAAATAACTACCTAAAGTTCATCATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATTTCAACCCAGCAACAGTGAAGATGCTAAGTAATCTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAACGGCGATTTTCCGTAATTCAG........................................................................................................................................TGGGAGGCTCTTGCTTTGTTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGACACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704750" ref_strand="+" ref_description="SGN-E704750 [FA25AF06]">
      <seq>caaactctttcacaattcccttcctaaatctccaaatttcaactttcactccactcgtctcagctcaactccatccgtcggtcggtgagccggacttatctggatctggccggaatatttgtcttcccgccaattctctcacaggtgagctgaaatactaagcagttgactcatgaagaaaggtatggcagaatgcgctgtctgtcattccaagcttgtttctccatctgtaaaaactatttcaagggcatatgatcgacacagaagcaagatttcatcaaagcaacgtgctctcaatgtcctattggttgtaggagattgtatgctggttggtttacagcctgttttggtatttatgtcgaaagtggatggaaaattcaagtttagtcccgtaagtgtcaacttcttgacagaggcgacaaaagtcgtctttgcaataataatgcttttaatccaggccaggcatcaaaaggttggagaaaagccacttctttcaatatccacatttgtccaggctgcaagaaacaatgtccttctcactttaccagcactactctatgccataaacaactacctaaagttcatcatgcagttatatttcaatccagcaacagtgaagatgctaagcaatctgaaggttttggttattgcagtgctgttgaaatttatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="78005" stop="67777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77705" g_stop="77562" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77561" i_stop="76890" i_length="672">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76889" g_stop="76694" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="340" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76357" g_stop="76241" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="457" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76157" g_stop="76101" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76100" i_stop="70803" i_length="5298">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70802" g_stop="70725" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="592" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70724" i_stop="69800" i_length="925">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69799" g_stop="69755" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="637" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69754" i_stop="68114" i_length="1641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68113" g_stop="68077" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="674" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E704750" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77705" e_stop="77562"/>
          <exon e_start="76889" e_stop="76694"/>
          <exon e_start="76357" e_stop="76241"/>
          <exon e_start="76157" e_stop="76101"/>
          <exon e_start="70802" e_stop="70725"/>
          <exon e_start="69799" e_stop="69755"/>
          <exon e_start="68113" e_stop="68077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTCTTTCACAATTCCCTTCCTAAATCTCCAAATTTCAACTTTCACTCCACTCGTCTCAGCTCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAGGTCACTTCTTCTCTTTTTGCTTATGTTTAATGTTAAAATAAGTTTGATATGTAGATCTATTTCATGTATGGATGCTTGATCCCTCTCAAATTCAATACTATCTGTTGTTATCATGCAAAAAGATTTCATTTTTTTATCCCTTGGATAGTGAGATCTGCGCTTTCTAAATTTCGCATTTTCATCATCTTTGGGACAAGTGAAGTCAGGACTTATTCAGCTGCAGCTGCACTAAGAGTTCACAAAGAACAAGTAGGTATCTTTGTGTATCCATTATAGATGTGTGCATGCTATCAAGTACCTCACACCCGTGTTATACCCATTTGACATCTAGGGGATGAATGAATGATACATGCAATGTACATATTTGTTATGCGGTTTGGCTTGATGGTAGTTTCATATCAAGGTTGAGAAAATGTAGGATCTGGATGACTTGTGCATGTACTTCACTTGATGTGTTAAAGCTGTTTGACCAGTGTAGCATTAAATGGCATATGAGATAGTCTTGAAAAGATGCAAATCAGCTGATATAATTCTGATGCTTAAATAATATTTGACAATCACACTGCCAGAACTTTTTCTTACTCTATTGCCTTACTTAAATTTTTTGTTTGTTTACCCTTCTATATTTCTGTTCTGATATATGGTTGCAATCAACATGTTTCTTGTATTTAGGTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAGGTAGCGGTCCTTTTCAAATGTTCTAATTGTTTATTCGTATTCTTCTCAGTTATCAGAAAAAAAGTTCTTAATTTTTGCATGCAAATGATAATATTCTACCAGTAAAGTGTACACTCACTAAGCTTCTTGATTTTGTGTGGATCGGTCTCTTTCCATAACAATCACCATTGATTTTTTTTTTAATTTAAAAGTAGCTTCTGCTTTTCTATCGAATATAGTTAATTATAGCTGTCACCTCATATCTTTTACCACTTGTTTCCATCAGCAAAACATTTAAATTTGCTGCTTAAAAATGAGAAAGACTTGTCTCACCCGGTATTTTATCCCCCTTTTCAGCCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAGGTACACTATTTTTATGTTTTTTGTTTACTTGATTTTTTTTTCGATAGTTCAATTTCATGTTTCTTGTTGGAATGTTTCTGCAGGCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAGGTAAAATGTCATTGGTGTGAGTGTTGTAACTGCTCTTAGTTCTCCTGGGTGGGTTGAAACCTAGTTTATTGCTCATCATGTCCTTGTAATAGCAAGATTCTTGCATATGTTCTTTATGATAATTTAAAGTTTGTAAGTGATGTAATATCTGAGGAGCCAGTCTCTAAATTGAGTCCTCTTCTTACATGATTAACCTATATTCATGTATGACACTAAGGATTTGAAAGATGCCTACCCTGGATGACTGTCTTGGACAAGAGTATTGTTGCTGTTGGACGCAGAAAGCTTTAAACAGCTTTCCGAAGTATCAATTTAATTTCTGTGTAAGATCCTGCACAGAAGAAAGATATCATGAGTTAAATCCCACTGGAAACAAAATCATTAGGTGGTTTCTTCCCATTGTCTGCCAAAGTTGTTACTGATGGGTGGTGGGAGGTGGCAGGTATCCCGTGGAACTAGTCGAGGTGTGCACAAGCTGGCCCAGACACCACAATTTATTTTCCCTAAAAAATAGATATAATGAGTTGTATAAAAGGGAAAAGTTTTACCACACCTCTTATGGTGTTCGCCAAATCTCCCAGGTGGGGAACTACACATACAAGAAGGAAATTTGAGCTTGATGCAAATGGATGGGTGTCAAGAAAGATAGGATGTTATGGTTTAAGGGAACAGCCATCGTGAAGATCTGCTAATGATATTATGCAGTAAAGAAAAGGTGCAAGCTGGACATTGCACTTGCTTGGGGCATGCTTCGTATAGTTGATATTGGATAAAAGAACTAAATGCTTCTCTTCACTGGTATAGTCTGCTGAAAAGAAAGTCCAAGAACTACTGCAATTCCTCTTGTGTATATCAGGACACCTTCATTTATTCATTCCACAGACGAGTCAATATGTTGCTGTGAGTTCTACCTTTCTTCATATCAAGATCCAGGCTCTAAAGTATGAGTATTATCTCCATAAGAGTGAAACAGGAATTAACATAAGTGGAGAATAATAGCAATCCTGCTCTCTTCTTTTCGGTTTCTGTTTGTAAAGTTCTTCATCAGCATTTTTAGATGCTGATGTTTTCGGAATGAATGCAAGTTACCTTATGAAAAAGAAAACATAAGTCGAGAATATGATTATATTGAGTTGATCCAAAATGTGGAGAATAAGGATGAAGACTCTGAGTTGATCCGGAGATACAGAAACTTTTATAGTATTGTCAAAGAATAGTTTTATTGGGACAAATGCAAAAACAGGCTGAACATTGAGATAATGTGAAACGACCTTGGAAATTAAAACCTTCTCATATATCTACATACTGTTCGAGCTGCAAGTTTTGCCGTGTCACGACCCAATTTCTCGAGTCATGATGGCACCTACTATAACCCACCAGTAGGTAACCCGACCCGTAACCCGGAACAACGCACAATGGGTCTGAGGGTAGAAACTAAACAAGAGTAGGCAAAATTTACTACTCCCTCCGTTTAAAAACGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCTTTCCTTTTTGGCAACACTTTATCTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTATATGGCATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAGAAAGTCTTTTTTTTATTCTTAAACTCCGTTCCAAGTCAAACTAGGCTATCATTTTTGAAACGGAGGGAGTATAACAATATAAACAGGCGGAAGCAAACCAAAACATATATACAAATAAGGATCCCTCCCAGAACCTGGAAGTCACTAGTACAGATCTACCAACAAAACGAGTACAAGTCCCAAAAGTGAACCACTGAAACTAGACTGTCTCGAAAGGTAAAAGACAAGTCTATATATATACAGATGGAGACTGAAATAGTACAGAATGTCGTGTGCTCACCCTCGTCTCCAGATCAGACTGCTCCAAACTCGATCAACATTGGCTACTCGTGCTCGAACCTACATCACGAAAATAGATGCAAAGCATAGCATGAGTACCAAACACTAGGTACCCAGTATGCATCATAGGCTGACTAAACTTGAAAAGTAAAGCAATATGAAAAGAAGGAATAACACAACTAGAGGTCAAGAACGAAAGTCTAAGTAACAATGGAATGCACACGAGTGTAGAAAGAACTAACTAAAGTAATATATAAGCTAACTACACCTAACTGGACCCCCCATAAGCCCAGAAGGCACACTTGTGCGCAAGTTTAAATAAAAACTCAAACGGACCCTCATTAGCTCGACGAGTACAGAGAATAACTATAACTAAGGAGAATAGAACCCAAGGCCAAAGAACATCGAACTAGATGCTCAAAACCAATAAGTAGAATCTGAGGGTACGGAGGTCCGGACACTCACCAAAATTACACAAGTAGCCAATCACAAATATAAGTAACTGAGTCCGTACCTCTAACCGGATGCTCCGCATAAGTATGCGGATGGTCGAGGCCAGACTTTGAACCGGATGCTCTTCCAAAATTATCAATGAAGTCAAGGTCGAGCCTTAAATCCGGAAGCCCGACAAAGGTGTCAACTTTGAATTGCGGAGCGGAACTCATTGTTACTGATGTAGCTCGTGAAGCCGTAACATCAATGAAGTAAGGATAACTATCGCCGGAGCGAACTCCTAGTCTAGCTAAGGCCCAAACTATCAGCCTCTAGTCTGCTACACCAGTCTACAAGGATTTAAGCCGACCGAGCGAGGTCGGGGCAAAACTAAGTCCTGCCGGTTTGCATTTCTAAGGCAAGCTCTAGTCAAACCTAAACGAAGACCCAACATACTTCCAATTAAACCGTACTCCAACATACAAAGCATACAAGTACTCCACATAGCAAAGAAGGTCAATTAATAACATAAAGCATGCTCACAGTTACTCGATAGTTCTCAGAAATAGGTTGAAAACATGATTTTTAACACTTATGCATGATTCAATAACTACCCAACCCAAATCTCAACTAATCAACATGCATTCACATGTTCGAGTTCAATCTAAGAGAAGGAAATCGTAGCCTACCTGTAGGCAGATCACGCCGCGCTCCAAAAATCACTTCTTCGGAGCTTTCCCTTTCCGAATGGCCTTGAAAAGTTGACACACTATAAAAAATAGTCACAATGTTATTACGGTCGTTTAGACACTAAAATCGCAAGAAACTGAGACGGCCTAATTTCGCGGTTAAAACGGGAAAAGTGGGACCTGCATTGAAAATTCCAGGATTAACCCCAAATATAGGTCCTAAACAGCTCTCGGAACTTGTGTTCCAAAGTGGAACACAATTCGGGGCTTGAAACATTCCCAACACGAACATGCAACCAAAAACCCAATAATACGCTAAAATTCAACAACAATGGCAGCAACTATTTACAAGAATTTACCAGAAACGAAGGTTCAACTGCTAAAACCAATCACACCACGACGATCCTCACGAAATCCCCCACAATATACGCTCTTGAATCACCAGATTCGGACCTAAAATGGCCAAGAAATCTTCTTCTAAAAGTTTCCCAAAAGTTGAACTCGAAAATGAGCTATGACAGCAGTTAAAACACAATTTTTTACCTTTAACAAGACTTCAAATGTGAATTCTGTCCACGCCAACACGTTCTCCTCGAAAATTCACTCAAGTTAACCTCCTGAATCGCCCAAATCGGACCTTTATAGCTCAAGGTATCACACTTTTAAGAAGAAGGCTTAAGCTGAGTTGGGGCTTTAATAAAAGACGAAACTGGTCGCTATTAACCCCAAAATTCTGGTCCCTAAAAGGGCTGCACCAGATTTCAGCTTTGGCTAATTTCTTCAAAGTCTCCGACGGTGTGCTCCGAATTCGTTCGGAACCTGATAAAAATAAAACAGATATCTGCCCTACTAAATTCGACATTCCGGACTCAACGGCGCAGTCAAAATTTCCATCAGAGGTCATCTCGATAAAAAGTGGGTCCCACTTCCATCGTCCATTTTAAGTCAAAAAACACACAAGGGCTCGAAAAAATATCGGCAACCTCAGGACACAAAAGAAGGGTCATACTAGACCAAACTCGACATTCCGGAAACCTCAGAATGTTGACTAAAGTCAAACTTAGCCTTAAACTTAAAGTTAAAACGCCTAATCGCACCAACTAGCCTAAGATGACCCTTTCGGAGCTGATGAAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTTATAAGCTCCAAAAACACTAAAACTCACACAATAACCAAACGAACGACCAGCTGACCAAACTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGACGCACAAAAGACAAAACACAGAAATGACCAAGAGGGTCATTACATTACCTTTGATCGACCTTGGAAGTTGGACCCTATTCATATTTCTATGTAGTGTCAAGCTGCCAAGTTTTGTTGTAGATGAGTTTTGTCTTCTGTATTGACAATTCAAATTTGCACTTGGCTGGAAAAGGAAAACTTCAACCTTTTTACCTCGCTTTGCTCCATTTCTTTCAGTTGTCAGTTTGTCTGATGTGAAATGGAAACTCCATTTAGGTGACTAATTGATGCTTGCAGATAACTGGTTTTCCTCTTTCTTAAGCTTCTATGCGACCTAAGGTCCATAAACAACTAAACCGTGTCAGTGAGGGGCAGAGAGGAAAAAATAGGAAAAAATGTATGATATTTATTGAAAGATCTCTAGTTGATGTCACTTGGCAAAAAATAAGAATGGAGCTCCAGTTGTTGCTTTTCACAAGTTGTATATATGGTTGGCAACTTGATAAATGCCAGTAAATGGCTCTGCTGAGTCATTGAAACAATTTATACATACTTTGACACCTGCTTGGTGTCTAGTTATGAAAATTTTGACTTACCAAAAAAGATTCTAAGACTTCTGATACCTTGTTGCTTGCTGACTGTGTGAGAGCTTCACTTTTCTTTGTTGTACTGTCAGTTCCATTTTAAAGTTGCCTAATTCTTCTCTGCAATCCTGGTTAAATTTTTTGTCCTTCACCATTCTATTGAACCACTACTTCAGCTTCTTAGAGAATTGAAGTTGTCAGCCTTTGTATAGATTTCAGATTCTATGTTGACTACTTGATGGCTGTTGTGTGTGACTGATTGTTTCAGTCTTGACATGCATGCGTTAGTTAGTTTCCATGTATTGTTCTGCAACCATGCTACCAAGTCATTCAACAGGCTTTCTATTAATTGGTAATTTACATCCATTTTTTTTCTTCAGGCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAGGTACTATTTGTTGAGCTTTTCTGTGCTTGTTAGTTCTCTGAGTAATTCCCATAGTTTTGTTATTTCATCCAGCATCTTACATTTTGCCTCTGCATTTTTTCTTGTACTGTACAGAGCTACAAAGTTGGAACATTGTCTTGCTTCATCCATGGTATTCATAGAGAATTACAGATCTTCCATGAGAAAAGTTGCTCTCAAACTTTACCTGTTTGTCTCAAAACTTGGGATATATCCAGTACTAGTTTCTAGGTTACATATTGACTTCTGAGCTAGGCAGTTGGATTTATACCTCAAACTAAGAAATCTGAATGCTGCTTGAGTACATAGAGTGATGATTCCATAGAGATTGGTATTTGTTAATAACTAATAACAAACTTCTATCTCTGGCGTCAATGGACTATTGTGGTTTTGCAAGAATGCTTCTGTGCACGATATTTTCTGCTTGCTGTCACTTTGTCCTTAGCACGACTAAGAATTCTAAATAAGGGAGTCTGCTGACTAACCAATTACCTTTGTTAGATGCCCTACTGGGCGAAGGTCTGGCATGTATAGACAAGTAGACATGCCATATCATGGTGCTGTAGAAGACAAGTGATGTCTTGACTCTTCCCTCTCACGGCTTAGATGTAAATGAAGAATTAAATTCATTTTTCGTAACTCTGTATCAGTTTATGGGTTCTTTTCTATACATCCCCATTCACTTTATCAGTTATTGAGACACCTCTATGAAACTTGATTCATGTTTGGCTTGGAGTCTACTGAGTCATGAATACATATTTGATTGACTGTTCTACTACTATTAAGATCTTTTCACTGTCCAATATCACATTTAAGTCACAGCTTGCTAGCTACCAGGCTATACACTGGATTTTCTTTTACCACAGTTCTCCTTTTTCTCACATTTTCCCTCAAATATTTTGTACAGTTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAGGTAACTGCTATATTTGAACACTTCTACAACGTATTATCTGATTGTGTTTGCTGCTTTTGCCGATTTTCTGCTGCATTCTTCAATTACTTTATTGACTCTGGCTCCTCTTCTTTCTTTTCATCATCTGCTACATTTTGATTTTTTGTGGGATAGAGTTACCTGGTCCTGTATTGGTGGGAGGTTGTAGGAACTCTATGGAATTAGTGGAGGTGCGCTAGATCTGGCCAGACACCACATTTGTAAAAATACAATGTCGCTAAATTCGGTTAGCACAATCCAACTTCATCCCTGTATTCGCCATCTCTGGATGAAACCTAAATTTGGATTAACTTCCATACGGTACGAATATCTCCCCAGATCTTTTGGGATTGAAGCGTTACTGTTGTTGCCGTTGTTTCTTGATCCAAATCTGTCTGGATTAGATTCCACAATTTTTGGTTCAGGACTAGACTGAAATTGCCCCCATCTTAATCTGTATTATGGAAGCTGCCAGTGCATAGAACTATTTTCTTTTTGAAATTTCAAGTAATGTGGATTGAAGTCCATGAAGTACTCTTTGTTAATAGCTTGCAGTCTTTAGCTGGTGCTTAATCTAATGAAGGAAGTTGTTTTAGCATCTTTCTAGAATGTCCAAAGTTTTCTGTTAACATCCTTCTTACAGGGCAGAAAAAAAGGACTACTCTTTTTTGTTCACTTGTCTCTCTATTAACCTAAATCCAAATAGTTTTATTAAGGTGGTTATTTCTTTTCAGGAGCCTTAGATGTGCTAAGAACATGGCCCCTTGGATAAATGGGTATAGGCTTTAATTATTTGTGTGCTGGACGGAATTCCTACATGATAATTGATGTCACCTTTTCCCATTCCAGGGAGTGTTGAAAAGAAGTTCAATTCCATTAGAAGCCAGTTCCTTTGGGAAGGAAATGCTAACAGGAAAATTTTGATTTGACCAAATGGCATGAAAAAAAGACAATAAAGGAGGTGGATTGGGTGTTAAAAATTTTAAAGCATCATAACAAGAAGGGGTATTCCTTTGTGTAGTTCTTCTATGAAATTCTCAGGAATGTGCCGAACACCTTTTTATTCATTGTAATCATGCAAAGCAGATATGAATTCTGTTCCTAACTCAGAGTGATATCAGGTATGAATTAGGTGATGCCAAAGAATGTGAGTGATCTATTGAATTGTTGGCAAAATCAGAATGTCGGGAAAATGAAATGCAAATCTGGGAAATGATACCTCTTTGCATCTTTTGTACCCTTTGGTTGGAAAGGACTACACGATGTTTTGAGAATTGGGAGAATCATTTAGCTAGCGTTAAGAATAGTCGTCTTCTTAATCTTTACTTGTGGTGTTGGGTACGTATGGCAGAAGACTTAGATCAGTACATGGATTTTATAGAAGCTTTGAGAATGTAACAGTTGCAGTTGCGCTGTAGTTTGTATGCTTTTAGTACCTTCTTGGTACTTATCGGGAAAAAAATGTGGTTATTTCTTTTTCGATACCTGAGACTTTACATATCAGTTGATGATTTCTCAGTTTCGACATTATACACCAAAGGATATATTTCAGAATACTTTATTGAATATGATGCTATGGTAGAGCTTTTCTTTAATATTTGTTTCTTTGCTGTCAATGTGCAGGTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGA</genome_strand>
        <mrna_strand>CAAACTCTTTCACAATTCCCTTCCTAAATCTCCAAATTTCAACTTTCACTCCACTCGTCTCAGCTCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAAAGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTAAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG...................................................................................GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGAAACAATGTCCTTCTCACTTTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709822" ref_strand="+" ref_description="SGN-E709822 [FA53BC01]">
      <seq>caccctaactctttcacaattcccttcctaaatctccaaatttcaactttcactccactcgtctcagctcaactccatccgtcggtcggtgagccggacttatctggatctggccggaatatttgtcttcccgccaattctctcacaggtgagctgaaatactaagcagttgactcatgaagaaaggtatggcagaatgcgctgtctgtcattccaagcttgtttctccatctgtaaaaactatttcaagggcatatgatcgacacagaagcaagatttcatcaaagcaacgtgctctcaatgtcctattggttgtaggagattgtatgctggttggtttacagcctgttttggtatttatgtcgaaagtggatggaaaattcaagtttagtcccgtaagtgtcaacttcttgacagaggcgacaaaagtcgtctttgcaataataatgcttttaatccaggccaggcatcaaaaggttggagaaaagccacttctttcaatatccacatttgtccaggctgcaagaaacaatgtccttctcactgtaccagcactactctatgccataaacaactacctaaagttcatcatgcagttatatttccatccagcaacagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="78009" stop="70416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77709" g_stop="77562" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77561" i_stop="76890" i_length="672">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76889" g_stop="76694" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="344" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76357" g_stop="76241" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="461" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76157" g_stop="76101" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="518" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76100" i_stop="70803" i_length="5298">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70802" g_stop="70725" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="596" r_length="78" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E709822" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77709" e_stop="77562"/>
          <exon e_start="76889" e_stop="76694"/>
          <exon e_start="76357" e_stop="76241"/>
          <exon e_start="76157" e_stop="76101"/>
          <exon e_start="70802" e_stop="70725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAACTCTTTCACAATTCCCTTCCTAAATCTCCAAATTTCAACTTTCACTCCACTCGTCTCAGCTCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAGGTCACTTCTTCTCTTTTTGCTTATGTTTAATGTTAAAATAAGTTTGATATGTAGATCTATTTCATGTATGGATGCTTGATCCCTCTCAAATTCAATACTATCTGTTGTTATCATGCAAAAAGATTTCATTTTTTTATCCCTTGGATAGTGAGATCTGCGCTTTCTAAATTTCGCATTTTCATCATCTTTGGGACAAGTGAAGTCAGGACTTATTCAGCTGCAGCTGCACTAAGAGTTCACAAAGAACAAGTAGGTATCTTTGTGTATCCATTATAGATGTGTGCATGCTATCAAGTACCTCACACCCGTGTTATACCCATTTGACATCTAGGGGATGAATGAATGATACATGCAATGTACATATTTGTTATGCGGTTTGGCTTGATGGTAGTTTCATATCAAGGTTGAGAAAATGTAGGATCTGGATGACTTGTGCATGTACTTCACTTGATGTGTTAAAGCTGTTTGACCAGTGTAGCATTAAATGGCATATGAGATAGTCTTGAAAAGATGCAAATCAGCTGATATAATTCTGATGCTTAAATAATATTTGACAATCACACTGCCAGAACTTTTTCTTACTCTATTGCCTTACTTAAATTTTTTGTTTGTTTACCCTTCTATATTTCTGTTCTGATATATGGTTGCAATCAACATGTTTCTTGTATTTAGGTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAGGTAGCGGTCCTTTTCAAATGTTCTAATTGTTTATTCGTATTCTTCTCAGTTATCAGAAAAAAAGTTCTTAATTTTTGCATGCAAATGATAATATTCTACCAGTAAAGTGTACACTCACTAAGCTTCTTGATTTTGTGTGGATCGGTCTCTTTCCATAACAATCACCATTGATTTTTTTTTTAATTTAAAAGTAGCTTCTGCTTTTCTATCGAATATAGTTAATTATAGCTGTCACCTCATATCTTTTACCACTTGTTTCCATCAGCAAAACATTTAAATTTGCTGCTTAAAAATGAGAAAGACTTGTCTCACCCGGTATTTTATCCCCCTTTTCAGCCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAGGTACACTATTTTTATGTTTTTTGTTTACTTGATTTTTTTTTCGATAGTTCAATTTCATGTTTCTTGTTGGAATGTTTCTGCAGGCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAGGTAAAATGTCATTGGTGTGAGTGTTGTAACTGCTCTTAGTTCTCCTGGGTGGGTTGAAACCTAGTTTATTGCTCATCATGTCCTTGTAATAGCAAGATTCTTGCATATGTTCTTTATGATAATTTAAAGTTTGTAAGTGATGTAATATCTGAGGAGCCAGTCTCTAAATTGAGTCCTCTTCTTACATGATTAACCTATATTCATGTATGACACTAAGGATTTGAAAGATGCCTACCCTGGATGACTGTCTTGGACAAGAGTATTGTTGCTGTTGGACGCAGAAAGCTTTAAACAGCTTTCCGAAGTATCAATTTAATTTCTGTGTAAGATCCTGCACAGAAGAAAGATATCATGAGTTAAATCCCACTGGAAACAAAATCATTAGGTGGTTTCTTCCCATTGTCTGCCAAAGTTGTTACTGATGGGTGGTGGGAGGTGGCAGGTATCCCGTGGAACTAGTCGAGGTGTGCACAAGCTGGCCCAGACACCACAATTTATTTTCCCTAAAAAATAGATATAATGAGTTGTATAAAAGGGAAAAGTTTTACCACACCTCTTATGGTGTTCGCCAAATCTCCCAGGTGGGGAACTACACATACAAGAAGGAAATTTGAGCTTGATGCAAATGGATGGGTGTCAAGAAAGATAGGATGTTATGGTTTAAGGGAACAGCCATCGTGAAGATCTGCTAATGATATTATGCAGTAAAGAAAAGGTGCAAGCTGGACATTGCACTTGCTTGGGGCATGCTTCGTATAGTTGATATTGGATAAAAGAACTAAATGCTTCTCTTCACTGGTATAGTCTGCTGAAAAGAAAGTCCAAGAACTACTGCAATTCCTCTTGTGTATATCAGGACACCTTCATTTATTCATTCCACAGACGAGTCAATATGTTGCTGTGAGTTCTACCTTTCTTCATATCAAGATCCAGGCTCTAAAGTATGAGTATTATCTCCATAAGAGTGAAACAGGAATTAACATAAGTGGAGAATAATAGCAATCCTGCTCTCTTCTTTTCGGTTTCTGTTTGTAAAGTTCTTCATCAGCATTTTTAGATGCTGATGTTTTCGGAATGAATGCAAGTTACCTTATGAAAAAGAAAACATAAGTCGAGAATATGATTATATTGAGTTGATCCAAAATGTGGAGAATAAGGATGAAGACTCTGAGTTGATCCGGAGATACAGAAACTTTTATAGTATTGTCAAAGAATAGTTTTATTGGGACAAATGCAAAAACAGGCTGAACATTGAGATAATGTGAAACGACCTTGGAAATTAAAACCTTCTCATATATCTACATACTGTTCGAGCTGCAAGTTTTGCCGTGTCACGACCCAATTTCTCGAGTCATGATGGCACCTACTATAACCCACCAGTAGGTAACCCGACCCGTAACCCGGAACAACGCACAATGGGTCTGAGGGTAGAAACTAAACAAGAGTAGGCAAAATTTACTACTCCCTCCGTTTAAAAACGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCTTTCCTTTTTGGCAACACTTTATCTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTATATGGCATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAGAAAGTCTTTTTTTTATTCTTAAACTCCGTTCCAAGTCAAACTAGGCTATCATTTTTGAAACGGAGGGAGTATAACAATATAAACAGGCGGAAGCAAACCAAAACATATATACAAATAAGGATCCCTCCCAGAACCTGGAAGTCACTAGTACAGATCTACCAACAAAACGAGTACAAGTCCCAAAAGTGAACCACTGAAACTAGACTGTCTCGAAAGGTAAAAGACAAGTCTATATATATACAGATGGAGACTGAAATAGTACAGAATGTCGTGTGCTCACCCTCGTCTCCAGATCAGACTGCTCCAAACTCGATCAACATTGGCTACTCGTGCTCGAACCTACATCACGAAAATAGATGCAAAGCATAGCATGAGTACCAAACACTAGGTACCCAGTATGCATCATAGGCTGACTAAACTTGAAAAGTAAAGCAATATGAAAAGAAGGAATAACACAACTAGAGGTCAAGAACGAAAGTCTAAGTAACAATGGAATGCACACGAGTGTAGAAAGAACTAACTAAAGTAATATATAAGCTAACTACACCTAACTGGACCCCCCATAAGCCCAGAAGGCACACTTGTGCGCAAGTTTAAATAAAAACTCAAACGGACCCTCATTAGCTCGACGAGTACAGAGAATAACTATAACTAAGGAGAATAGAACCCAAGGCCAAAGAACATCGAACTAGATGCTCAAAACCAATAAGTAGAATCTGAGGGTACGGAGGTCCGGACACTCACCAAAATTACACAAGTAGCCAATCACAAATATAAGTAACTGAGTCCGTACCTCTAACCGGATGCTCCGCATAAGTATGCGGATGGTCGAGGCCAGACTTTGAACCGGATGCTCTTCCAAAATTATCAATGAAGTCAAGGTCGAGCCTTAAATCCGGAAGCCCGACAAAGGTGTCAACTTTGAATTGCGGAGCGGAACTCATTGTTACTGATGTAGCTCGTGAAGCCGTAACATCAATGAAGTAAGGATAACTATCGCCGGAGCGAACTCCTAGTCTAGCTAAGGCCCAAACTATCAGCCTCTAGTCTGCTACACCAGTCTACAAGGATTTAAGCCGACCGAGCGAGGTCGGGGCAAAACTAAGTCCTGCCGGTTTGCATTTCTAAGGCAAGCTCTAGTCAAACCTAAACGAAGACCCAACATACTTCCAATTAAACCGTACTCCAACATACAAAGCATACAAGTACTCCACATAGCAAAGAAGGTCAATTAATAACATAAAGCATGCTCACAGTTACTCGATAGTTCTCAGAAATAGGTTGAAAACATGATTTTTAACACTTATGCATGATTCAATAACTACCCAACCCAAATCTCAACTAATCAACATGCATTCACATGTTCGAGTTCAATCTAAGAGAAGGAAATCGTAGCCTACCTGTAGGCAGATCACGCCGCGCTCCAAAAATCACTTCTTCGGAGCTTTCCCTTTCCGAATGGCCTTGAAAAGTTGACACACTATAAAAAATAGTCACAATGTTATTACGGTCGTTTAGACACTAAAATCGCAAGAAACTGAGACGGCCTAATTTCGCGGTTAAAACGGGAAAAGTGGGACCTGCATTGAAAATTCCAGGATTAACCCCAAATATAGGTCCTAAACAGCTCTCGGAACTTGTGTTCCAAAGTGGAACACAATTCGGGGCTTGAAACATTCCCAACACGAACATGCAACCAAAAACCCAATAATACGCTAAAATTCAACAACAATGGCAGCAACTATTTACAAGAATTTACCAGAAACGAAGGTTCAACTGCTAAAACCAATCACACCACGACGATCCTCACGAAATCCCCCACAATATACGCTCTTGAATCACCAGATTCGGACCTAAAATGGCCAAGAAATCTTCTTCTAAAAGTTTCCCAAAAGTTGAACTCGAAAATGAGCTATGACAGCAGTTAAAACACAATTTTTTACCTTTAACAAGACTTCAAATGTGAATTCTGTCCACGCCAACACGTTCTCCTCGAAAATTCACTCAAGTTAACCTCCTGAATCGCCCAAATCGGACCTTTATAGCTCAAGGTATCACACTTTTAAGAAGAAGGCTTAAGCTGAGTTGGGGCTTTAATAAAAGACGAAACTGGTCGCTATTAACCCCAAAATTCTGGTCCCTAAAAGGGCTGCACCAGATTTCAGCTTTGGCTAATTTCTTCAAAGTCTCCGACGGTGTGCTCCGAATTCGTTCGGAACCTGATAAAAATAAAACAGATATCTGCCCTACTAAATTCGACATTCCGGACTCAACGGCGCAGTCAAAATTTCCATCAGAGGTCATCTCGATAAAAAGTGGGTCCCACTTCCATCGTCCATTTTAAGTCAAAAAACACACAAGGGCTCGAAAAAATATCGGCAACCTCAGGACACAAAAGAAGGGTCATACTAGACCAAACTCGACATTCCGGAAACCTCAGAATGTTGACTAAAGTCAAACTTAGCCTTAAACTTAAAGTTAAAACGCCTAATCGCACCAACTAGCCTAAGATGACCCTTTCGGAGCTGATGAAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTTATAAGCTCCAAAAACACTAAAACTCACACAATAACCAAACGAACGACCAGCTGACCAAACTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGACGCACAAAAGACAAAACACAGAAATGACCAAGAGGGTCATTACATTACCTTTGATCGACCTTGGAAGTTGGACCCTATTCATATTTCTATGTAGTGTCAAGCTGCCAAGTTTTGTTGTAGATGAGTTTTGTCTTCTGTATTGACAATTCAAATTTGCACTTGGCTGGAAAAGGAAAACTTCAACCTTTTTACCTCGCTTTGCTCCATTTCTTTCAGTTGTCAGTTTGTCTGATGTGAAATGGAAACTCCATTTAGGTGACTAATTGATGCTTGCAGATAACTGGTTTTCCTCTTTCTTAAGCTTCTATGCGACCTAAGGTCCATAAACAACTAAACCGTGTCAGTGAGGGGCAGAGAGGAAAAAATAGGAAAAAATGTATGATATTTATTGAAAGATCTCTAGTTGATGTCACTTGGCAAAAAATAAGAATGGAGCTCCAGTTGTTGCTTTTCACAAGTTGTATATATGGTTGGCAACTTGATAAATGCCAGTAAATGGCTCTGCTGAGTCATTGAAACAATTTATACATACTTTGACACCTGCTTGGTGTCTAGTTATGAAAATTTTGACTTACCAAAAAAGATTCTAAGACTTCTGATACCTTGTTGCTTGCTGACTGTGTGAGAGCTTCACTTTTCTTTGTTGTACTGTCAGTTCCATTTTAAAGTTGCCTAATTCTTCTCTGCAATCCTGGTTAAATTTTTTGTCCTTCACCATTCTATTGAACCACTACTTCAGCTTCTTAGAGAATTGAAGTTGTCAGCCTTTGTATAGATTTCAGATTCTATGTTGACTACTTGATGGCTGTTGTGTGTGACTGATTGTTTCAGTCTTGACATGCATGCGTTAGTTAGTTTCCATGTATTGTTCTGCAACCATGCTACCAAGTCATTCAACAGGCTTTCTATTAATTGGTAATTTACATCCATTTTTTTTCTTCAGGCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAG</genome_strand>
        <mrna_strand>CACCCTAACTCTTTCACAATTCCCTTCCTAAATCTCCAAATTTCAACTTTCACTCCACTCGTCTCAGCTCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAAAGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTAAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG...................................................................................GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGAAACAATGTCCTTCTCACTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331276" ref_strand="+" ref_description="SGN-E331276 [cTOD-6-N19]">
      <seq>tcaactccatccgtcggtcggtgagccggacttatctggatctggccggaatatttgtcttcccgccaattctctcacaggtcacttcttatctttttgcttatgtttaatgttaaaataagtttgatatgtagatctatttcatgtatggatgcttgatccctctcaaattcaatactatctgttgttatcatgcaaaaagatttcatttttttatcccttggatagtgagatctgcgctttctaaatttcgcattttcatcatctttgggacaagtgaagtcaggacttattcagctgcagctgcactaagagttcacaaagaacaagtgagctgaaatactaagcagttgactcatgaagaacggtatggcagaatgcgctgtctgtcattccaagcttgtttctccatctgtgaaaactatttcaagggcatatgatcgacacagaagcaagatttcatcaaagcaacgtgctctcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="77941" stop="76435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77641" g_stop="77313" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77312" i_stop="76890" i_length="423">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76889" g_stop="76735" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="484" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E331276" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77641" e_stop="77313"/>
          <exon e_start="76889" e_stop="76735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAGGTCACTTCTTCTCTTTTTGCTTATGTTTAATGTTAAAATAAGTTTGATATGTAGATCTATTTCATGTATGGATGCTTGATCCCTCTCAAATTCAATACTATCTGTTGTTATCATGCAAAAAGATTTCATTTTTTTATCCCTTGGATAGTGAGATCTGCGCTTTCTAAATTTCGCATTTTCATCATCTTTGGGACAAGTGAAGTCAGGACTTATTCAGCTGCAGCTGCACTAAGAGTTCACAAAGAACAAGTAGGTATCTTTGTGTATCCATTATAGATGTGTGCATGCTATCAAGTACCTCACACCCGTGTTATACCCATTTGACATCTAGGGGATGAATGAATGATACATGCAATGTACATATTTGTTATGCGGTTTGGCTTGATGGTAGTTTCATATCAAGGTTGAGAAAATGTAGGATCTGGATGACTTGTGCATGTACTTCACTTGATGTGTTAAAGCTGTTTGACCAGTGTAGCATTAAATGGCATATGAGATAGTCTTGAAAAGATGCAAATCAGCTGATATAATTCTGATGCTTAAATAATATTTGACAATCACACTGCCAGAACTTTTTCTTACTCTATTGCCTTACTTAAATTTTTTGTTTGTTTACCCTTCTATATTTCTGTTCTGATATATGGTTGCAATCAACATGTTTCTTGTATTTAGGTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATG</genome_strand>
        <mrna_strand>TCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAGGTCACTTCTTATCTTTTTGCTTATGTTTAATGTTAAAATAAGTTTGATATGTAGATCTATTTCATGTATGGATGCTTGATCCCTCTCAAATTCAATACTATCTGTTGTTATCATGCAAAAAGATTTCATTTTTTTATCCCTTGGATAGTGAGATCTGCGCTTTCTAAATTTCGCATTTTCATCATCTTTGGGACAAGTGAAGTCAGGACTTATTCAGCTGCAGCTGCACTAAGAGTTCACAAAGAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745242" ref_strand="-" ref_description="SGN-E745242 [GI|19227]">
      <seq>gaattcctaataaggtggaggtggtgatggtgaaggtggcggaggagacttgtagtaataaggtggaggtggtgatggtgaaggtggtggaggtgacttgtagtaataaggtggaggtggtgagtgagaaggaggtggtggggacttgtagacgtatggtggtggtggagaaggtgatggtggtggtggggacttgtacacgtacggtggtggaggagagggagaaggaggtggcggggacttgtacacgtacggtggtggaggagagggagaaggaggtgggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="82964" stop="81706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82673" g_stop="82550" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82549" i_stop="82214" i_length="336">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82213" g_stop="82047" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="288" r_length="166" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E745242" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745242" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82673" e_stop="82550"/>
          <exon e_start="82213" e_stop="82047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGCGGAGGAGACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGTGGAGGTGACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGTGGAGGAGACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGAGGTGGAGACTTGTAATAATAAGGTGGAGGTGGTGATGGTGATGGAGGTGGTGGAGACTTGTAGTAGTAAGGTGGTGGTGGTGAGGGATCAGGTGGTGGAGGGGACTTGTAGTAGTATGGTGGTGGTGGGGAAGGTGATGGTGGTGGCGGAGACTTGTAATAGTAAGGTGGTGGAGGAGATGGTGATGGAGGTGGTGGGGATTTGTAGTAGTAAGGTGGTGGAGGAGATGGTGAGGGTGGAGGAGGTGATTTATAGTAGTAAGGTGGTGGAGGAGAGGGAGAAGGAGGTGGTGGGGACTTGTAGACGTATGGTGGTGGTGGAGAAGGTGATGGTGGTGGTGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGGCGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGGCGGGGAC</genome_strand>
        <mrna_strand>GAATT--CCTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGCGGAGGAGACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGTGGAGGTGACTTGTAGTAATAAGGTGGAGGTGGTG................................................................................................................................................................................................................................................................................................................................................AGTGAGAAGGAGGTGGTGGGGACTTGTAGACGTATGGTGGTGGTGGAGAAGGTGATGGTGGTGGTGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGGCGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGG-GAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311495" ref_strand="+" ref_description="SGN-E311495 [cLEZ-18-N14]">
      <seq>ccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaanaaaaaaaagagataaaaaaaaaaaaggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87224" stop="23385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86924" g_stop="86862" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="458" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="85216" i_length="1168">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85215" g_stop="85173" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="501" r_length="43" r_score="0.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E311495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86924" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="85215" e_stop="85173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAATAAGAAACGATAGACGGATATATACTCACATAACATTAGTTGGTTTCTAATGTTCCTTTTAGGATAGGCTTTTTTCGTTTTACAGATATGATTTTTGTGGCAAATTTTTGTATTTGTTTTACATAAATCTTATAGTGTGGTGTTACGAGCGAATTATATTATATTTTTAATTTATTTCAAATTACAAAAATTCTTTGGTGAAATCTTAAATACATCCAAAAATGTCTTATGTATTACGTTTTCATTTCGAATACATCCCGATACATTTACAATTCGATTGTAAATGTTAGTTGGTGTCGTTCTCGTATGGCATTAACATTTTCTCCAGTTAGTCACTGTACATAGCTAGCTTTGTTTGGATTCATTGCTAATATTGCTTTTGGTTGCTGGTCCCAAACACACATCACATGCCACATTGGAAAAAGTATATAAACCCTACATTATGATTTATGAGTTGACGAGTAGCAGCCTTTTTGTCCTCAATAATTGGGAATTCTTTTATTTTTATGCATGAAAAATTAATATAAGGATCCATTTACAAATTGAAATTTTGACGTATACACTACGTCAACAAGGCATGGGGATATAATTAACATTTACTACTTTGTATTATACGATCTATGCATACGCTATAACAAAAATAATTTTTAGCGACATTAAATATTGACACTAATAAAGAGTATTAAATCTTTAAAATCAATGTCGCTAAAGGCTTTAAGGACATATACAAAGAGTGACAATAACTACTAAAAATTCATATTTAGCGATAATAAAAATTAAATATCGCTATTTTTGTTGTAATGAGATAATATAAATGAATTCATTTTTGTCGGATATTAATAATTAAAGTATGTCTCAATCATAGAATGACAAAAGATCTATGCATGTGCTTGGGATCGTGTATCCCACTAACAACTAATTACATGTTGTCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>CCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAANAAAAAAAAGAGATAAAAAAAAAAAAGGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716134" ref_strand="+" ref_description="SGN-E716134 [FB16AH02]">
      <seq>ctacaagtccccaccaccaccatcaccgtctcctcctccaccatactactacaaatcaccaccacccccatcaccatcaccaccccctccctactactatcactctccacctccacccgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87429" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87129" g_stop="86862" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86385" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="662" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86384" i_stop="86217" i_length="168">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86205" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="674" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E716134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87129" e_stop="86862"/>
          <exon e_start="86778" e_stop="86385"/>
          <exon e_start="86216" e_stop="86205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAATAA</genome_strand>
        <mrna_strand>CTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTC........................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459344" ref_strand="+" ref_description="SGN-E459344 [cPRO-27-H5]">
      <seq>cttcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctatggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttctttatagtaatttattatatgtataggctttgtaatttgattcgtttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87355" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87055" g_stop="86862" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86385" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="577" r_length="383" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86384" i_stop="86217" i_length="168">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86205" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="589" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E459344" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87055" e_stop="86862"/>
          <exon e_start="86778" e_stop="86385"/>
          <exon e_start="86216" e_stop="86205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAATAA</genome_strand>
        <mrna_strand>CTTCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTATGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCTTTATAG------T-A---A-T-TTATTATATGTATAGGCTTTGTAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTC........................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464310" ref_strand="+" ref_description="SGN-E464310 [cPRO-17-J19]">
      <seq>caccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87352" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87052" g_stop="86862" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86385" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="588" r_length="397" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86384" i_stop="86217" i_length="168">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86205" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="600" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E464310" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87052" e_stop="86862"/>
          <exon e_start="86778" e_stop="86385"/>
          <exon e_start="86216" e_stop="86205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAATAA</genome_strand>
        <mrna_strand>CACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTC........................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308539" ref_strand="+" ref_description="SGN-E308539 [cLEY-21-J12]">
      <seq>cctactactatcactctccacctccacccgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87340" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87040" g_stop="86862" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86385" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="573" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86384" i_stop="86217" i_length="168">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86205" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="585" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E308539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87040" e_stop="86862"/>
          <exon e_start="86778" e_stop="86385"/>
          <exon e_start="86216" e_stop="86205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAATAA</genome_strand>
        <mrna_strand>CCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTC........................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354534" ref_strand="+" ref_description="SGN-E354534 [cTOS-17-A6]">
      <seq>catctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggacgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87237" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86937" g_stop="86862" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="471" r_length="395" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86205" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="483" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E354534" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86937" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAATAA</genome_strand>
        <mrna_strand>CATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGACGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA.......................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354332" ref_strand="+" ref_description="SGN-E354332 [cTOS-17-A5]">
      <seq>catctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87237" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86937" g_stop="86862" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="471" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86205" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="483" r_length="12" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E354332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86937" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAATAA</genome_strand>
        <mrna_strand>CATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA.......................................................................................................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458539" ref_strand="+" ref_description="SGN-E458539 [cPRO-6-G1]">
      <seq>tacaaatcaccaccacccccatctccatcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagaaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87380" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87080" g_stop="86862" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="617" r_length="398" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="626" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E458539" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E458539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87080" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>TACAAATCACCACCACCCCCATCTCCATCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAG-AA-ATTTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTCA.......................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464308" ref_strand="+" ref_description="SGN-E464308 [cPRO-17-J13]">
      <seq>tttatcaccaccacctccctactactaccactctcctcctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87354" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87057" g_stop="86862" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="594" r_length="398" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="603" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E464308" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87057" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>TTTATCACCACCACCTCCCTACTACTACCACTCTCCTCCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTCA.......................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464305" ref_strand="+" ref_description="SGN-E464305 [cPRO-17-J7]">
      <seq>ccatcaccaccacctccctactactaccactctcctcctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccagatcaataaagagatgatttttgttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87356" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87056" g_stop="86862" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86385" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="592" r_length="397" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86384" i_stop="86217" i_length="168">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="601" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E464305" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87056" e_stop="86862"/>
          <exon e_start="86778" e_stop="86385"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>CCATCACCACCACCTCCCTACTACTACCACTCTCCTCCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAGATCAATAAAGAGATGATTTTTGTTC........................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464378" ref_strand="+" ref_description="SGN-E464378 [cPRO-17-H8]">
      <seq>ccatcaccaccacctccctactactaccactctcctcctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87356" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87056" g_stop="86862" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="593" r_length="398" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="602" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E464378" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87056" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>CCATCACCACCACCTCCCTACTACTACCACTCTCCTCCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTCA.......................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464399" ref_strand="+" ref_description="SGN-E464399 [cPRO-17-L10]">
      <seq>ccatcaccaccacctccctactactaccactctcctcctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87356" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87056" g_stop="86862" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="593" r_length="398" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="602" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E464399" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87056" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>CCATCACCACCACCTCCCTACTACTACCACTCTCCTCCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTCA.......................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464409" ref_strand="+" ref_description="SGN-E464409 [cPRO-17-N6]">
      <seq>ccatcaccaccacctccctactactaccactctcctcctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87356" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87056" g_stop="86862" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="593" r_length="398" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="602" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E464409" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87056" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>CCATCACCACCACCTCCCTACTACTACCACTCTCCTCCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTCA.......................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304244" ref_strand="+" ref_description="SGN-E304244 [cLEX-6-F22]">
      <seq>tactatcactctccacctccacccgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87335" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87035" g_stop="86862" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="569" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="578" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E304244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87035" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>TACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA.......................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457744" ref_strand="+" ref_description="SGN-E457744 [cPRO-3-H17]">
      <seq>ctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccannatcataaagagatgatttttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87313" stop="86111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87013" g_stop="86862" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="550" r_length="398" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="559" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E457744" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87013" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGT----GGAAAGTGGCTT--A-AA--TAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>CTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCANNATCATAAAGAGATGATTTTTGTTCA.......................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460265" ref_strand="+" ref_description="SGN-E460265 [cPRO-30-O14]">
      <seq>gtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87311" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87011" g_stop="86862" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86385" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="547" r_length="397" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86384" i_stop="86217" i_length="168">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="556" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E460265" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87011" e_stop="86862"/>
          <exon e_start="86778" e_stop="86385"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGT--G--GAAAGTGGCTT--A-AA--TAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>GTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTC........................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407305" ref_strand="+" ref_description="SGN-E407305 [PPI-6-N5]">
      <seq>gtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagaagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87306" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87006" g_stop="86862" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86385" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="543" r_length="398" r_score="0.898"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86384" i_stop="86217" i_length="168">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="552" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E407305" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87006" e_stop="86862"/>
          <exon e_start="86778" e_stop="86385"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAA-TAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCA----CGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>GTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTC........................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355359" ref_strand="+" ref_description="SGN-E355359 [cTOS-18-P2]">
      <seq>acctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87255" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86955" g_stop="86862" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="489" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="498" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E355359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86955" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>ACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA.......................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457942" ref_strand="+" ref_description="SGN-E457942 [cPRO-4-O5]">
      <seq>gagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttctttatagtaatttattatatgtataggctttgtaatttgattcgtttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87038" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86738" g_stop="86384" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86216" g_stop="86208" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="353" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E457942" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86738" e_stop="86384"/>
          <exon e_start="86216" e_stop="86208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAA</genome_strand>
        <mrna_strand>GAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCTTTATAG------T-A---A-T-TTATTATATGTATAGGCTTTGTAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTCA.......................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350876" ref_strand="+" ref_description="SGN-E350876 [cTOS-7-I12]">
      <seq>tctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87227" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86927" g_stop="86862" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86382" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="463" r_length="397" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E350876" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86927" e_stop="86862"/>
          <exon e_start="86778" e_stop="86382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACT</genome_strand>
        <mrna_strand>TCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711346" ref_strand="+" ref_description="SGN-E711346 [FB01DA10]">
      <seq>aggtacctttagatttattgtttcagatggaggaggagaaacaccaccaccaccacctgttccaccatactactacaaatcaccaccacccccatcaccatcaccaccccctccctactactatcactctccacctccacccgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87414" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87112" g_stop="86862" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="292" r_length="251" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="687" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="698"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E711346" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87112" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</genome_strand>
        <mrna_strand>CACCACCACCACCACCTGTTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466185" ref_strand="+" ref_description="SGN-E466185 [cPRO-23-O16]">
      <seq>atcacccccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87354" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87054" g_stop="86862" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="591" r_length="398" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="592" polyA_stop="601"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E466185" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87054" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</genome_strand>
        <mrna_strand>ATCACCCCCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464667" ref_strand="+" ref_description="SGN-E464667 [cPRO-18-P17]">
      <seq>gtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87306" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87006" g_stop="86862" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="543" r_length="398" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="544" polyA_stop="556"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E464667" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87006" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGT--G--GAAAGTGGCTT-AA-A---TAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</genome_strand>
        <mrna_strand>GTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393326" ref_strand="+" ref_description="SGN-E393326 [TUS-38-E1](-)">
      <seq>aaatcacctcctcctccagtatacatttatggttttccgccaccaccagtccattattaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttttgcttttttggtttccttattacacattgttttttgtgtgttttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatttagtgtacaatttcatatgttgcttctttatagtaataataatttattattattataggtataggctttgtaattggattcgttttgtttttaattattgttggccgtttcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87260" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86960" g_stop="86862" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="494" r_length="395" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="524"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E393326" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86960" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</genome_strand>
        <mrna_strand>AAATCACCTCCTCCTCCAGTATACATTTATGGTTTTCCGCCACCACCAGTCCATTATTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTTTGCTTTTTTGGTTTCCTTATTACACATTGTTTTTTGTGTGTTTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATTTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATAGGTATAGGCTTTGTAATTGGATTCGTTTTGTTTTTAATTATTGTTGGCCGTTTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431578" ref_strand="-" ref_description="SGN-E431578 [STM-55-P11]">
      <seq>gcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttgttcaaaagtaaaaaaaaaaaaaagggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87200" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86900" g_stop="86862" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="437" r_length="398" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="457"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E431578" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431578" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86900" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</genome_strand>
        <mrna_strand>GCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354423" ref_strand="+" ref_description="SGN-E354423 [cTOS-17-D13]">
      <seq>gaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87193" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86893" g_stop="86862" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="427" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="440"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E354423" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86893" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</genome_strand>
        <mrna_strand>GAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355188" ref_strand="+" ref_description="SGN-E355188 [cTOS-18-B2]">
      <seq>gaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87193" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86893" g_stop="86862" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="427" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="440"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E355188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86893" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</genome_strand>
        <mrna_strand>GAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355231" ref_strand="+" ref_description="SGN-E355231 [cTOS-18-A2]">
      <seq>gaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87193" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86893" g_stop="86862" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="427" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="440"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E355231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86893" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</genome_strand>
        <mrna_strand>GAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304454" ref_strand="+" ref_description="SGN-E304454 [cLEX-12-L23]">
      <seq>acccgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcaggttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87315" stop="86088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87015" g_stop="86862" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86388" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="545" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E304454" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87015" e_stop="86862"/>
          <exon e_start="86778" e_stop="86388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTG</genome_strand>
        <mrna_strand>ACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGGTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555210" ref_strand="+" ref_description="SGN-E555210 [cTSC-6-M13]">
      <seq>acataacactccacctcccatattactacaagtctcctccaccaaccaatcaccatcatccatcctccaccatacaactacaaaatccccaccggggggggggggcgtctcctcctccaccatactactacaaatcaccaccacccccgtcgccgtcactaacaaaaccctactactatcactctccacctccacccgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccctgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgccccaaatcaataaagagatgaattttgtttaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87499" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87200" g_stop="86862" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86389" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="737" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E555210" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87200" e_stop="86862"/>
          <exon e_start="86778" e_stop="86389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAC-CTCCACCTCCC-TATTACTACAAGTCTCCTCCACC-ACC-ATCGCCATC-TCC-TCCTCCACCATACTACTAC-AAGTCCCCACC-ACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTT</genome_strand>
        <mrna_strand>ACATAACACTCCACCTCCCATATTACTACAAGTCTCCTCCACCAACCAATCACCATCATCCATCCTCCACCATACAACTACAAAATCCCCACCGGGGGGGGGGGGCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCGTCGCCGTCACTAACAAAACCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCCTGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCCCCAAATCAATAAAGAGATGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451294" ref_strand="+" ref_description="SGN-E451294 [cSTS-12-E24]">
      <seq>cgccatctcctcctccaccatactactacaaatcaccaccacccccatctccatcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagnaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttggtcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87406" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87106" g_stop="86862" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86389" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="638" r_length="393" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="655"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E451294" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87106" e_stop="86862"/>
          <exon e_start="86778" e_stop="86389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTT</genome_strand>
        <mrna_strand>CGCCATCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCTCCATCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGNAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460263" ref_strand="+" ref_description="SGN-E460263 [cPRO-30-O10]">
      <seq>gtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagnaatttattattattattattatggataggctttgcaatttgattcgtttgctcttaattattggtggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaaataagagatgatttttggtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87311" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87011" g_stop="86862" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86389" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="543" r_length="393" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="548" polyA_stop="557"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E460263" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87011" e_stop="86862"/>
          <exon e_start="86778" e_stop="86389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGT--G--GAAAGTGGCTT--A-AA--TAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTT</genome_strand>
        <mrna_strand>GTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGNAAT--TTA-TTATTATTATTATTATGGATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGGTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAAATAAGAGATGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393191" ref_strand="+" ref_description="SGN-E393191 [TUS-38-E1]">
      <seq>aaatcacctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87260" stop="86085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86960" g_stop="86862" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86389" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="489" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="524"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E393191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86960" e_stop="86862"/>
          <exon e_start="86778" e_stop="86389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTT</genome_strand>
        <mrna_strand>AAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430549" ref_strand="-" ref_description="SGN-E430549 [STM-53-J4]">
      <seq>aaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtacaatttcatatgttgcttcgttatagtaatttattattattattattatgtataggctttgcaatttgattcgtttgctcttaattattgttggctgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgatttttttcaaaaaaaagttann</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87192" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86892" g_stop="86862" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86389" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="424" r_length="393" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E430549" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430549" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86892" e_stop="86862"/>
          <exon e_start="86778" e_stop="86389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTA-TATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTT</genome_strand>
        <mrna_strand>AAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACAATTTCATATGTTGCTTCGTTATAGTAAT--TTA-TTATTATTATTATTATGTATAGGCTTTGCAATTTGATTCG-TTTGCTCTTAATTATTGTTGGCTGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351200" ref_strand="+" ref_description="SGN-E351200 [cTOS-6-E8]">
      <seq>tcaccatcaccaccccctccctactactatcactctccacctccacccgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87359" stop="86092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87059" g_stop="86862" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86392" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="585" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E351200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87059" e_stop="86862"/>
          <exon e_start="86778" e_stop="86392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAAT</genome_strand>
        <mrna_strand>TCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203942" ref_strand="+" ref_description="SGN-E203942 [cLEC-22-I5]">
      <seq>aatcacctgctcctccagtatacatctatggttctccgccaccgggagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctgtggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatgtcatatgtggcttctttatagtaatagtaattgattatgattatatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87259" stop="86189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86959" g_stop="86862" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86489" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="388" r_length="290" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E203942" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86959" e_stop="86862"/>
          <exon e_start="86778" e_stop="86489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTAT</genome_strand>
        <mrna_strand>AATCACCTGCTCCTCCAGTATACATCTATGGTTCTCCGCCACCGGGAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTGTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATGTCATATGTGGCTTCTTTATAGTAATAGTAATTGATTATGATTATATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463165" ref_strand="+" ref_description="SGN-E463165 [cPRO-13-F10]">
      <seq>tacaaatctcctccaccaccatctccatcaccgccacctccatactactacaaatctcctccaccaccatctccatcacctccacctccttactactacaagtctccaccaccaccatcaccgtctcctcctccaccatactactacaaatcaccaccacccccatctccatcaccaccacctccctactactaccactctcctcctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttctacttctctggtttccttattacacattgttctctgtgtgtcttcacgtacgtggaaagtggcttcgacagcttagttggaaatagtaattatacatctagtgtaccatttcatatgttgcttcgntatagaaattttatattattatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87524" stop="86199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87224" g_stop="86862" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86499" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="649" r_length="286" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E463165" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87224" e_stop="86862"/>
          <exon e_start="86778" e_stop="86499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTT--C--ACGTGGAAAGTGGCTT--A-A--ATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTA</genome_strand>
        <mrna_strand>TACAAATCTCCTCCACCACCATCTCCATCACCGCCACCTCCATACTACTACAAATCTCCTCCACCACCATCTCCATCACCTCCACCTCCTTACTACTACAAGTCTCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCTCCATCACCACCACCTCCCTACTACTACCACTCTCCTCCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTACGTGGAAAGTGGCTTCGACAGCTTAGTTGGAAATAGTAATTAT--A-CATCTAGTGTACCATTTCATATGTTGCTTCGNTATAGAAATTTTATATTATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601158" ref_strand="+" ref_description="SGN-E601158 [54188]">
      <seq>caccaccatccccatcacctccacctccctactactacaagtcccctccaccaccatcgccatctcctcctccaccatactactacaagtccccaccaccaccatcaccgtctcctcctccaccatactactacaagtccccaccaccaccatcaccatcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccaccggtaaaatcacctccccctccagtatacatctatggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatggcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaagtttgcacttgagaggttgattcctagtgacttggactactttacttctacttctctggtttccttattacacatagggctctgtgtgtcttcacgtacgtggacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87511" stop="86294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87211" g_stop="86862" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86596" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="533" r_length="183" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E601158" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87211" e_stop="86862"/>
          <exon e_start="86778" e_stop="86596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCAC</genome_strand>
        <mrna_strand>CACCACCATCCCCATCACCTCCACCTCCCTACTACTACAAGTCCCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCATCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCGGTAAAATCACCTCCCCCTCCAGTATACATCTATGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATGGCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAAGTTTGCACTTGAGAGGTTGATTCCTAGTGACTTGGACTACTTTACTTCTACTTCTCTGGTTTCCTTATTACACATAGGGCTCTGTGTGTCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560513" ref_strand="+" ref_description="SGN-E560513 [20178]">
      <seq>caccagacccatctcccccaccaccatactactacaagtctcctccaccaccatcgccatcacccccacctccatactactacaaatcaccaccaccaccatccccatcacctccacctccctactactacaagtcccctccaccaccatcgccatctcctcctccaccatactactacaagtccccaccaccaccatcaccgtctcctcctccaccatactactacaagtccccaccaccaccatcaccatcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccaccggtaaaatcacctccccctccagtatacatctatggttctccaccaccaccagtccactactacgcagttcgaaaagcttggccattttccacaaccactcaaatgtcagtttcagtcacaaaataagtgatgggttcttgaggagacgattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggactactttacttctacttctctggtttccttattacaattgttctctgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87604" stop="86303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87304" g_stop="86862" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86603" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="618" r_length="175" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E560513" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87304" e_stop="86862"/>
          <exon e_start="86778" e_stop="86603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGACCCATCTCCCCCACCACCATACTACTACAAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTG</genome_strand>
        <mrna_strand>CACCAGACCCATCTCCCCCACCACCATACTACTACAAGTCTCCTCCACCACCATCGCCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTACTACTACAAGTCCCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCATCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCGGTAAAATCACCTCCCCCTCCAGTATACATCTATGGTTCTCCACCACCACCAGTCCACTACTACGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATGTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGACGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACTACTTTACTTCTACTTCTCTGGTTTCCTTATTACA-ATTGTTCTCTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463720" ref_strand="+" ref_description="SGN-E463720 [cPRO-15-F14]">
      <seq>ctacaagtccccaccaccaccatctccatctcctcctccaccatactactacaaatcaccacccccaccatctccatctcctcctccaccatactactacaagtctccaccaccaccagacccatctcccccaccaccatactactacaagtctcctccaccaccatcgccatcacccccacctccatactactacaaatcaccaccaccatcaccgtctcctcctccaccatactactacaaatcaccaccacccccatctccatcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttgggacactttacttctacttctctgggttcccttatacacattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87666" stop="86312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87321" g_stop="86862" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86612" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="624" r_length="167" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E463720" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87321" e_stop="86862"/>
          <exon e_start="86778" e_stop="86612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGTCTCCACCACCACCAGACCCATCTCCCCCACCACCATACTACTACAAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTT</genome_strand>
        <mrna_strand>CTACAAGTCCCCACCACCACCATCTCCATCTCCTCCTCCACCATACTACTACAAATCACCACCCCCACCATCTCCATCTCCTCCTCCACCATACTACTACAAGTCTCCACCACCACCAGACCCATCTCCCCCACCACCATACTACTACAAGTCTCCTCCACCACCATCGCCATCACCCCCACCTCCATACTACTACAAAT---CACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCTCCATCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGGACACTTTACTTCTACTTCTCTGGGTTCCCTTATACACATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486480" ref_strand="+" ref_description="SGN-E486480 [cSTE-22-E2]">
      <seq>gtcccctccaccaccatcgccatctcctcctccaccatactactacaagtccccaccaccaccatcaccgtctcctcctccaccatactactacaaatcaccaccacccccatctccatcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccaccggtaaaatcacctccccctccagtatacatctatggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaagttcaactttgcaattgagaggttgattcctagtgacttggaccactttacttcttcttctctggtttccttattacacattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87471" stop="86314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87171" g_stop="86862" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86613" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="476" r_length="166" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E486480" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87171" e_stop="86862"/>
          <exon e_start="86778" e_stop="86613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGT</genome_strand>
        <mrna_strand>GTCCCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCTCCATCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCGGTAAAATCACCTCCCCCTCCAGTATACATCTATGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTACTTCTTCTTCTCTGGTTTCCTTATTACACATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335857" ref_strand="+" ref_description="SGN-E335857 [cTOE-6-N11]">
      <seq>ccatctcctccaccaccatactattacaagtctcctccaccaccatcaccatctcctcctccaccatactactacaagtccccaccaccaccatcaccgtctcctcctccaccatactactacaaatcaccaccacccccatcaccatcaccaccccctccctactactatcactctccacctccacccgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87500" stop="86318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87200" g_stop="86862" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86618" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="500" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E335857" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87200" e_stop="86862"/>
          <exon e_start="86778" e_stop="86618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACAC</genome_strand>
        <mrna_strand>CCATCTCCTCCACCACCATACTATTACAAGTCTCCTCCACCACCATCACCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409631" ref_strand="+" ref_description="SGN-E409631 [PPI-14-L3]">
      <seq>cacctcctcctccctactactacaagtctcctccaccaccatcgccatctcctcctccaccatactactacaagtccccaccaccaccatcaccatctcctcctccaccatactactacaaatcaccaccacccccatcaccttcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctatggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatggcattaataagaagttcactttgcaattgagagggtgattcctagtgactgggaccacttgcttctacttctctgggttcccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87496" stop="86323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87196" g_stop="86862" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86633" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="479" r_length="144" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E409631" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87196" e_stop="86862"/>
          <exon e_start="86778" e_stop="86633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTG</genome_strand>
        <mrna_strand>CACCTCCTCCTCCCTACTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCATCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCTTCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTATGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGGCATTAATAAGAAGTTC-ACTTTGCAATTGAGAGGGTGATTCCTAGTGACTGGGACCAC-TTGCTTCTACTTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461277" ref_strand="+" ref_description="SGN-E461277 [cPRO-7-J18]">
      <seq>atctcctcctccaccatactactacaaatcaccaccacccccatcaccttcaccaccaccntccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctatggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagaataagaagtccatggtcaaatgcaattaataagaagtttcaactttgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87401" stop="86382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87102" g_stop="86862" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86682" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="340" r_length="98" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E461277" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87102" e_stop="86862"/>
          <exon e_start="86778" e_stop="86682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACC-CCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATG-TTCAACTTTGCAAT</genome_strand>
        <mrna_strand>ATCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCTTCACCACCACCNTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTATGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGAATAAGAAGTCCATGGTCAAATGCAATTAATAAGAAGTTTCAACTTTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401010" ref_strand="+" ref_description="SGN-E401010 [PPC-2-H4]">
      <seq>ctacaaatcaccaccacccccatcaccttcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctatggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaagagttccatggtcaaatgcaattaataagaaggtcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87381" stop="86387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87081" g_stop="86862" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86687" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="312" r_length="92" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E401010" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87081" e_stop="86862"/>
          <exon e_start="86778" e_stop="86687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTT</genome_strand>
        <mrna_strand>CTACAAATCACCACCACCCCCATCACCTTCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTATGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAAGAGTTCCATGGTCAAATGCAATTAATAAGAAGGTCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E575935" ref_strand="+" ref_description="SGN-E575935 [35637]">
      <seq>aagtctcctccaccaccatcgccatcacccccacctccatactactacaaatcaccaccaccaccatccccgtcacctccacctccctactactacaagtctcctccaccaccatcgccatctcctcctccaccatactactacaagtccccaccaccaccatcaccgtctcctcctccaccatactactacaaatcaccaccacccccatctccatcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccgactcaaatgtcagtttcagtcacaaaataagtgatgggttcttgagcagaagattccgagttccatggtcaaatgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87569" stop="86430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87269" g_stop="86862" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86705" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="483" r_length="74" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E575935" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E575935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87269" e_stop="86862"/>
          <exon e_start="86778" e_stop="86705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACC-ACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATT</genome_strand>
        <mrna_strand>AAGTCTCCTCCACCACCATCGCCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCGTCACCTCCACCTCCCTACTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCTCCATCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCGACTCAA...................................................................................ATGTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGCAGAAGATTCCGAGTTCCATGGTCAAATGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442753" ref_strand="+" ref_description="SGN-E442753 [cSTA-34-H10]">
      <seq>ctcctccacccccatctccatcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87373" stop="86450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87073" g_stop="86862" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86750" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="241" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E442753" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87073" e_stop="86862"/>
          <exon e_start="86778" e_stop="86750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGAT</genome_strand>
        <mrna_strand>CTCCTCCACCCCCATCTCCATCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487694" ref_strand="+" ref_description="SGN-E487694 [cSTE-26-G10]">
      <seq>caagaagtcaccaccaccaccatactactactcctcgccaccaccacccaagaagtcacctcctccaccatactattacaaatctcctccaccaccatctccatcaccgccacctccatactactacaaatctcctccaccaccatcaccatcacctccacctccttactactacaagtctcctccaccaccatcgccatcacccccacctccatactactacaaatcaccaccaccaccatccccgtcacctccacctccctactactacaagtctcctccaccaccatcgccatctcctcctccaccatactactacaagtccccaccaccaccatcaccgtctcctcctccaccatactactacaaatcaccaccacccccatctccatcaccaccacctccctactactaccactctccacctccacctgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctccccctccagtatacatctacggttctccaccaccaccagtccactactaagcagttcgaaaagcttggccattttccacaaccactcaagtaagttgaattatactttaaaatgtccttgttaattttaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87716" stop="86518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87519" g_stop="87343" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87342" i_stop="87268" i_length="75">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87267" g_stop="86818" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="627" r_length="450" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E487694" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87519" e_stop="87343"/>
          <exon e_start="87267" e_stop="86818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCCTACTACTACAAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCCTACTACTACAAGTCTCCTCCTCCACCATACTACTACAAGTCTCCACCACCACCAGACCCATCTCCCCCACCACCATACTACTACAAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTA</genome_strand>
        <mrna_strand>CAAGAAGTCACCACCACCACCATACTACTACTCCTCGCCACCACCACCCAAGAAGTCACCTCCTCCACCATACTATTACAAATCTCCTCCACCACCATCTCCATCACCGCCACCTCCATACTACTACAAATCTCCTCCACCACCATCACCATCACCTCCACCTCCTTACTACTACAA...........................................................................GTCTCCTCCACCACCATCGCCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCGTCACCTCCACCTCCCTACTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCTCCATCACCACCACCTCCCTACTACTACCACTCTCCACCTCCACCTGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCCCCTCCAGTATACATCTACGGTTCTCCACCACCACCAGTCCACTACTAAGCAGTTCGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTATACTTTAAAATGTCCTTGTTAATTTTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349993" ref_strand="-" ref_description="SGN-E349993 [cTOS-4-M1]">
      <seq>aatatcatttatgcttgggctctttctcatatttgttcgctggccagttgtgggtatcattgtggaaatatatggatgcattattctcgtcggttgtttctggccatccatcaaggtttttctgttccagattcctgtatttggatggattctgcagtatcatgccctgcttgttgaccgctttcgtagctgactgactgatttgtctactccagttatcctgtttgtaaaagaggaagaatatactgagctagggttgtttgtcatgtgatgcagattgctgtcacctttatcttcaaatgtatattagatgttgattaggattataataatcatcagttctgaagtagcaaatcttgttatcaagttttcttatactatcctatccgcctttttctgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="89545" stop="87717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89245" g_stop="89153" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89152" i_stop="89055" i_length="98">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.696" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89054" g_stop="88979" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="169" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88978" i_stop="88249" i_length="730">
            <donor d_prob="0.878" d_score="0.96"/>
            <acceptor a_prob="0.874" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88248" g_stop="88016" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="402" r_length="233" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E349993" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349993" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89245" e_stop="89153"/>
          <exon e_start="89054" e_stop="88979"/>
          <exon e_start="88248" e_stop="88016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGGGTGAGCACCTTTTGGATAGATAACACTTCTCTCATATTTCTCCTCATTCGTCTTTCCTCGAGTAACATAAGATTTTGATTTTGATCTTTTCCCTGCAGTTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTGGTGAGTTAATACTTATGCCTATCTCAAATTGGTATGGCTTCATTGGAGATGGAAGGGTATTTAAAGCTTTTGCAGCTCCTTCAAGCCATTTTTCCTTTAATTAAACTGATACATGTGGTTGAATTTTTTAACCCAAAATAAGGGAAGTTGTGTTAAATATTGTACTGAGGCATGCCTGATTTTGATTTTGGCTATGGTCATGTTTGTTTGTTCTTTTGATTGTGGTCCTTGATGGTTGTCTGAAGTTGCAATTTTGTCCTCAATACTTTGGGTTGTGCAACTCGCACTCCTATATGTTAATTTGTGCCCACGGATCCTGATTTTATCACATAAATGGCCATATTTTTTAAACTCACATATGATAATGGTTAGATGAACACTATTGTATACCAATCCATAGGGCGTCACTTTTTGGTTATGGTCAAATTTATGTCATAGTCTACTCTTTGGGAATAGAAACTTATTAAATCCGTTACGTTGGTGTTATGTAGTGCCTTGAACCTTCCAGCAAACCTCACTTTATAAGTCCAAGTCATGGATGTGCAAAATTTATATTATATCTATAAGAAGAAGCTAAGGTAGGTATTAGTGGATGTTTGATCTGGACCATGGCTAACAAGTGGCCATTATGGTGTAACTTGAAGGTTTAGATGATTGACAGCAAACAGATATAAGTTTCAGTTTTTGTATCATGCTACCTAGGTTCTAACATCTTCCCCTTTGTTTTCAGCTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAGTTCTGAAGTAGCAAATCTTGTTATCAAGTTTTCTTATACTATCCTATCCCCTGTTTTCTCTAC</genome_strand>
        <mrna_strand>AATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCGTCGG..................................................................................................TTGTTTCTGGCCATCCATCAAGGTTTTTCTGTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCATGCCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAGTTCTGAAGTAGCAAATCTTGTTATCAAGTTTTCTTATACTATCCTATCCGCCTTTTTCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351463" ref_strand="-" ref_description="SGN-E351463 [cTOS-12-J18]">
      <seq>aagagcgcagctgaatatcatttgcggggaacccatcggaattgtgagagaaggtggtgaatctaagtggaagatattgcaactctgatttcagaaagagacacactagcagcgagatgacatatgaattagatgaacaaaaaaaggttgggttaggtctcattggatttggcatctttttcacttttcttgccataaggttgttcttcgacaggggtttgcttgcgctggcaaatatacttttgttagcaggtgtagcacttctgtagggtttgcgttctacattacagctcttcaaagtaatctagcaagggcacaatatcatttatgcttgggctctttctcatatttgttcgctggccagttgtgggtatcatcgtggaaatatatggatgcattattctcttcggttgtttctggccatccatcaaggtttttcttttccagattcctgtacttggatggattctgcagtatcctgccgtgcttcttgaccgcttttgtagctgactgaatgatttgtctactccagttatcctgtttgtaaaagaggaagaatatactgagctagggttgtttgtcacgtgatgcagattgctgtcacctttatcttcaagtgtatattagatgttgattaggattataataatcatcagttctgaagtagcaaatcttgttatcaagttttcatatcctatcctatcccctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="93023" stop="87724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92723" g_stop="92654" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92653" i_stop="92307" i_length="347">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92232" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="144" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92231" i_stop="92102" i_length="130">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92101" g_stop="92010" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="236" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92009" i_stop="91942" i_length="68">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91941" g_stop="91867" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="312" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91866" i_stop="89251" i_length="2616">
            <donor d_prob="0.433" d_score="0.92"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89250" g_stop="89153" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="410" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89152" i_stop="89055" i_length="98">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.696" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89054" g_stop="88979" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="486" r_length="76" r_score="0.974"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88978" i_stop="88249" i_length="730">
            <donor d_prob="0.878" d_score="0.96"/>
            <acceptor a_prob="0.874" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88248" g_stop="88024" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="711" r_length="225" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E351463" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351463" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92723" e_stop="92654"/>
          <exon e_start="92306" e_stop="92232"/>
          <exon e_start="92101" e_stop="92010"/>
          <exon e_start="91941" e_stop="91867"/>
          <exon e_start="89250" e_stop="89153"/>
          <exon e_start="89054" e_stop="88979"/>
          <exon e_start="88248" e_stop="88024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCGCAGCTGAATATCATTTGCGGGGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTGGTAATTTTCTCTTCTTCACCTACAATCAAATCGCCGATTTTATTTTATTTTTCTAATTTTGGTTGTCGATGACAGATTAGTATGCAAAATCTAAAAAATGGAACTTGGAATGTCTTTATAAATTGAATTTAGAAAGAAAACAGAGAAAAATTTATGCATGAATTTTTAGTTTTAGAAAAGATGGTATGCTAATGTTTTACTGTTTGGTAAAATAAAGAATGAGGTGCTTTAATTTGGCCGATCCCATCTGAACTCAATACTTTCTGCTGTAATGAATTATTCGTAACTACTATAACTTAAATTCGAAGTCTACTTTTACATTTACATTTATGCTAATCATTTTTTAGGAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAAGTAAGCAGATTTCATTTTGTGCTCAATTTGCATGCGCTTATGATAAACTTTATCTTCCAAGAGCCATAAATGCACTCTGTTTACTAATATAGTTTGGCATCTCACCTTCAAAATTTTATAAACCTTGCAGAGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAATGTAAGTAATCTGTAGTTATCTTGATTTATGAAACGAACAACTAATTTCTTCTTCTTATCTTGTCCTAGATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTA-CAAGGTAGGGGCATTTGTGAGGAATACATCCTTTTGTCCTGTACTCCTGTTATAATTCACTCAATGCGTAGTAATAACATTTTCTGCTGCTTGCATTAGCAATTTCCTGTATACAAGAGCAATCTCATATTTCTGTGGAGTAGTTTAATAGATCTACCAGGTTTATCTCTTCCATGTGATCGATTTAGCATGTATCATGCTTGTTGCAATAACTAATCCTTAGGCATTGCTAAAGCTATGATTGTTAAATTCGAACACAATGTCGCGGTGTGGCTTAAATGCGACTCTGAATACTAGTTGCTCTCTAGCATGAGGTTATTTTGTTGTCTTTTTAGATTGATTTTCAATTTGTCTTCAGAGCCAAAGTTTCATTTTTCCTTTCTATATAAAAAAATACTGAAGAAGGAAAATTAAGAAGTTCAAGAATAGGTCACAAAGGAGCAAACCATGATAATTGTGTCTCCTAAATGCTCCAAAATTTTACAAAAGCATCCTTTAAGGGATGATAAGAGCACAAAATTTTAACTCATTATGTCTTAAAATATACTGAATGAAAGGCTACCAAGGCAAACCTTCTACTACTCTAGGAAAAGATTGTTAATATAAAAATGTCTAGTTACTAAGAGATATATCCGGTATATATATATATTAAGTGATTCAAAGGTTTCTTTTATTAGTTTTAATAATAATTTTGTTTAATTTAATAAAAAGAAGTCTATTTTGTACTCTATCTGTGTATTCTTTTTTATTCCTAAAAAATAGCAGATGAAATAGAAGGCTTAGAGGGGAGATAATGGAATTATGTGATTGGGTCTTCCAAAAACAAAGGAATAATCCGTTTTTCCATTAACTGATTTGATGGGTCCAACAAACAATTAATTATAACAAATATCTAAATTCTACATTAAAAAAAAATACTAGACTAAGATTCTAAATAAAGGATAATAAATAAAAGGGGTCCTCTTTTATTCGAAACGGAGAGGCTCCATTACTCTTTTGTGAGGCAAAATAAACTTCTTGTTTTAGTAAAGGAAAGAGTAAAAAGGTTCAATGCTCACAATCTCCCATATGTATTGCAACAACAAACCTAGTATAATCCCATAAGTGGGGTATGGGGAAGGTGGTGTGTACTAGGCCTTATCCCTACCTTGTGAAGATAGAGTTTCCTATAGACCCTTGTCTCAAGTATAGCACATCAAAAAAGGATAGTAGCTAAGAATCTGAAGAAGCATATCAATAGCTAGAATCTAAAGAAGAGAATAGTAGCAACAACTAATATGATAATTGAATCAAAGGAAACAATAGGTAATACTAAGATCGAAGAATAAGATAGTAGGAAAGCAATAATAATAAAACTGATAACGGAACTAGACAATGTTCGACTACCAACTAACCTTTATCCTAATTGCGACCTCCATATCTCCCTATCTAGGGTCATAATCTTAGTAAGCTGCAATTGAGCCATGTCAAGTCTTATCACCTCTGCATATCTCCCATACGTATTGATATTCTGTAATTTATAAATTACATCTTCCACAGATGTTTCTGGTTCCCACAAATGCAACTTAAGATAGTTACATGTCGAACTAACAGTTTAGCTATTAATTTGTTTCCAACTTCTTCTTTACTTGATCAGTTACAAACCCCACTGAAGTGTTCTTATTGCTCCCTGTTAGTTCGACTTATTTCTTTTGAGCTAGGTAGATAATGTATCTTCCATCTGTAGTCTATGATATAGACCTTTAGGTGGCTTAATTTCCATTTCTTGTGGTCATGACAACTAGGCTTAAGTTAAATCACTTAGCTCTTTCCGAAAAAGTACCGGGAGAAAGCACCGTCAGGGGTTTGAACCCCACCATAGACCCAAAAAAAAAAGTAGGGAGGGGAATTGCCGAGGGCTTCTCTTCTATGTGGTTCTGCATGATACTTGCGTTAATGTTTCAGAAGTGTTATTTGTAGTTTTGATGATGTAACAAACTCAGGGACCTTATGAAGGTACCCTGTTCTCAATATGAATCGTTCGTTGACTGTCAGCTGGAGAAAGTACAGAAAGTTGTGTAACCGATTTCCTTTTGCTTGTGAAGATTAGTGAAACGGTTGTGAAAATCCTGTGAGACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAAACTCCTCTGTTGTTAAACTGCATTTACTTTCTGCTATATCCTTATTTGTGTGTCAAGGGACCTGGTCCATTGACTAATAGTGGACGCACAGATTCTAACAAGAAGTTAACAGCTTAGAACCTTCCGCTTTAGTACAAAACTTTCTAACCCATCTCTCAAGGGCTATTAATTCTCTAGGCAATGCATTCTCAACCTTTGTGTTGTTTTATCCATCTTCTATAATCTCGCTGCTGGACCTTAATGCCTTATGTTCTTAATTTTTACTGTTTTAGAATGAAATGAAGACAGTAATGGTCTTTATAATGTGAGGGAGAGACTAGGGTGGAGGGTCTCTGACATGCAATGTCTACCTTGCTTAAGACATAAATGTTTCTTTACTCTGTATCTTTCTTTGACTGAAACTAAACAAGTTGCATCACATCAGTTTTCATCTTAGGTCTTTTTTCTCTTTTACTCCAGGGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGGGTGAGCACCTTTTGGATAGATAACACTTCTCTCATATTTCTCCTCATTCGTCTTTCCTCGAGTAACATAAGATTTTGATTTTGATCTTTTCCCTGCAGTTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTGGTGAGTTAATACTTATGCCTATCTCAAATTGGTATGGCTTCATTGGAGATGGAAGGGTATTTAAAGCTTTTGCAGCTCCTTCAAGCCATTTTTCCTTTAATTAAACTGATACATGTGGTTGAATTTTTTAACCCAAAATAAGGGAAGTTGTGTTAAATATTGTACTGAGGCATGCCTGATTTTGATTTTGGCTATGGTCATGTTTGTTTGTTCTTTTGATTGTGGTCCTTGATGGTTGTCTGAAGTTGCAATTTTGTCCTCAATACTTTGGGTTGTGCAACTCGCACTCCTATATGTTAATTTGTGCCCACGGATCCTGATTTTATCACATAAATGGCCATATTTTTTAAACTCACATATGATAATGGTTAGATGAACACTATTGTATACCAATCCATAGGGCGTCACTTTTTGGTTATGGTCAAATTTATGTCATAGTCTACTCTTTGGGAATAGAAACTTATTAAATCCGTTACGTTGGTGTTATGTAGTGCCTTGAACCTTCCAGCAAACCTCACTTTATAAGTCCAAGTCATGGATGTGCAAAATTTATATTATATCTATAAGAAGAAGCTAAGGTAGGTATTAGTGGATGTTTGATCTGGACCATGGCTAACAAGTGGCCATTATGGTGTAACTTGAAGGTTTAGATGATTGACAGCAAACAGATATAAGTTTCAGTTTTTGTATCATGCTACCTAGGTTCTAACATCTTCCCCTTTGTTTTCAGCTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAGTTCTGAAGTAGCAAATCTTGTTATCAAGTTTTCTTATACTATCCTATCCCCTGTT</genome_strand>
        <mrna_strand>AAGAGCGCAGCTGAATATCATTTGCGGGGAACCCATCGGAATTG-TGAGAGAAGGTGGTGAATCTAAGTG...........................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAA..................................................................................................................................AGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAAGGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAAT....................................................................ATACTTTTGTTAGCAGGTGTAGCACTTCTGTAGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAATCTAGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATCGTGGAAATATATGGATGCATTATTCTCTTCGG..................................................................................................TTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTACTTGGATGGATTCTGCAGTATCCTGCCGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGACCGCTTTTGTAGCTGACTGAATGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCACGTGATGCAGATTGCTGTCACCTTTATCTTCAAGTGTATATTAGATGTTGATTAGGATTATAATAATCATCAGTTCTGAAGTAGCAAATCTTGTTATCAAGTTTTCATATCCTATCCTATCCCCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302593" ref_strand="+" ref_description="SGN-E302593 [cLEX-1-A19](-)">
      <seq>gtgcttagaaaagaagaaaaacaagagtaagagcgcagctgaatatcatttgcggggaacccatctgaattgttgagagaaggtggtgaatctaagtggaagatattgcaactctgatttcagaaagagacacactagcagcgagatgacatatgaattagatgaacaaaaaaaggttgggttaggtctcattggatttggcatctttttcacttttcttgccataatgttgttcttcgacaggggtttgcttgcgctggcaaatatacttttgttagcaggtgtagcacttctgttgggtttgcgttctacattacagctcttcaaagtaaactacaagggcacaatatcatttatgcttgggctctttctcatatttgttcgctggccagttgtgggtatcattgtggaaatatatggatgcattattctcttcggttgtttctggccatccatcaaggtttttcttttccagattcctgtatttggatggattctgcagtatcctgccctgcttcttgaccgctttcgtagctgactgactgatttgtctactccagttatcctgtttgtaaaagaggaagaatatactgagctagggttgtttgtcatgtgatgcagattgctgtcacctttatcttcaaatgtatattagatgttgattaggattataataatcatcagttctgaagtagcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="93051" stop="87764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92751" g_stop="92654" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92653" i_stop="92307" i_length="347">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92232" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="173" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92231" i_stop="92102" i_length="130">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92101" g_stop="92010" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="265" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92009" i_stop="91942" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91941" g_stop="91867" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="340" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91866" i_stop="89251" i_length="2616">
            <donor d_prob="0.433" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89250" g_stop="89153" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="438" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89152" i_stop="89055" i_length="98">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89054" g_stop="88979" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="514" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88978" i_stop="88249" i_length="730">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88248" g_stop="88065" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="698" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E302593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92751" e_stop="92654"/>
          <exon e_start="92306" e_stop="92232"/>
          <exon e_start="92101" e_stop="92010"/>
          <exon e_start="91941" e_stop="91867"/>
          <exon e_start="89250" e_stop="89153"/>
          <exon e_start="89054" e_stop="88979"/>
          <exon e_start="88248" e_stop="88065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTAGAAAAGAAGAAAAACAAGAGTAAGAGCGCAGCTGAATATCATTTGCGGGGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTGGTAATTTTCTCTTCTTCACCTACAATCAAATCGCCGATTTTATTTTATTTTTCTAATTTTGGTTGTCGATGACAGATTAGTATGCAAAATCTAAAAAATGGAACTTGGAATGTCTTTATAAATTGAATTTAGAAAGAAAACAGAGAAAAATTTATGCATGAATTTTTAGTTTTAGAAAAGATGGTATGCTAATGTTTTACTGTTTGGTAAAATAAAGAATGAGGTGCTTTAATTTGGCCGATCCCATCTGAACTCAATACTTTCTGCTGTAATGAATTATTCGTAACTACTATAACTTAAATTCGAAGTCTACTTTTACATTTACATTTATGCTAATCATTTTTTAGGAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAAGTAAGCAGATTTCATTTTGTGCTCAATTTGCATGCGCTTATGATAAACTTTATCTTCCAAGAGCCATAAATGCACTCTGTTTACTAATATAGTTTGGCATCTCACCTTCAAAATTTTATAAACCTTGCAGAGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAATGTAAGTAATCTGTAGTTATCTTGATTTATGAAACGAACAACTAATTTCTTCTTCTTATCTTGTCCTAGATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAGGTAGGGGCATTTGTGAGGAATACATCCTTTTGTCCTGTACTCCTGTTATAATTCACTCAATGCGTAGTAATAACATTTTCTGCTGCTTGCATTAGCAATTTCCTGTATACAAGAGCAATCTCATATTTCTGTGGAGTAGTTTAATAGATCTACCAGGTTTATCTCTTCCATGTGATCGATTTAGCATGTATCATGCTTGTTGCAATAACTAATCCTTAGGCATTGCTAAAGCTATGATTGTTAAATTCGAACACAATGTCGCGGTGTGGCTTAAATGCGACTCTGAATACTAGTTGCTCTCTAGCATGAGGTTATTTTGTTGTCTTTTTAGATTGATTTTCAATTTGTCTTCAGAGCCAAAGTTTCATTTTTCCTTTCTATATAAAAAAATACTGAAGAAGGAAAATTAAGAAGTTCAAGAATAGGTCACAAAGGAGCAAACCATGATAATTGTGTCTCCTAAATGCTCCAAAATTTTACAAAAGCATCCTTTAAGGGATGATAAGAGCACAAAATTTTAACTCATTATGTCTTAAAATATACTGAATGAAAGGCTACCAAGGCAAACCTTCTACTACTCTAGGAAAAGATTGTTAATATAAAAATGTCTAGTTACTAAGAGATATATCCGGTATATATATATATTAAGTGATTCAAAGGTTTCTTTTATTAGTTTTAATAATAATTTTGTTTAATTTAATAAAAAGAAGTCTATTTTGTACTCTATCTGTGTATTCTTTTTTATTCCTAAAAAATAGCAGATGAAATAGAAGGCTTAGAGGGGAGATAATGGAATTATGTGATTGGGTCTTCCAAAAACAAAGGAATAATCCGTTTTTCCATTAACTGATTTGATGGGTCCAACAAACAATTAATTATAACAAATATCTAAATTCTACATTAAAAAAAAATACTAGACTAAGATTCTAAATAAAGGATAATAAATAAAAGGGGTCCTCTTTTATTCGAAACGGAGAGGCTCCATTACTCTTTTGTGAGGCAAAATAAACTTCTTGTTTTAGTAAAGGAAAGAGTAAAAAGGTTCAATGCTCACAATCTCCCATATGTATTGCAACAACAAACCTAGTATAATCCCATAAGTGGGGTATGGGGAAGGTGGTGTGTACTAGGCCTTATCCCTACCTTGTGAAGATAGAGTTTCCTATAGACCCTTGTCTCAAGTATAGCACATCAAAAAAGGATAGTAGCTAAGAATCTGAAGAAGCATATCAATAGCTAGAATCTAAAGAAGAGAATAGTAGCAACAACTAATATGATAATTGAATCAAAGGAAACAATAGGTAATACTAAGATCGAAGAATAAGATAGTAGGAAAGCAATAATAATAAAACTGATAACGGAACTAGACAATGTTCGACTACCAACTAACCTTTATCCTAATTGCGACCTCCATATCTCCCTATCTAGGGTCATAATCTTAGTAAGCTGCAATTGAGCCATGTCAAGTCTTATCACCTCTGCATATCTCCCATACGTATTGATATTCTGTAATTTATAAATTACATCTTCCACAGATGTTTCTGGTTCCCACAAATGCAACTTAAGATAGTTACATGTCGAACTAACAGTTTAGCTATTAATTTGTTTCCAACTTCTTCTTTACTTGATCAGTTACAAACCCCACTGAAGTGTTCTTATTGCTCCCTGTTAGTTCGACTTATTTCTTTTGAGCTAGGTAGATAATGTATCTTCCATCTGTAGTCTATGATATAGACCTTTAGGTGGCTTAATTTCCATTTCTTGTGGTCATGACAACTAGGCTTAAGTTAAATCACTTAGCTCTTTCCGAAAAAGTACCGGGAGAAAGCACCGTCAGGGGTTTGAACCCCACCATAGACCCAAAAAAAAAAGTAGGGAGGGGAATTGCCGAGGGCTTCTCTTCTATGTGGTTCTGCATGATACTTGCGTTAATGTTTCAGAAGTGTTATTTGTAGTTTTGATGATGTAACAAACTCAGGGACCTTATGAAGGTACCCTGTTCTCAATATGAATCGTTCGTTGACTGTCAGCTGGAGAAAGTACAGAAAGTTGTGTAACCGATTTCCTTTTGCTTGTGAAGATTAGTGAAACGGTTGTGAAAATCCTGTGAGACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAAACTCCTCTGTTGTTAAACTGCATTTACTTTCTGCTATATCCTTATTTGTGTGTCAAGGGACCTGGTCCATTGACTAATAGTGGACGCACAGATTCTAACAAGAAGTTAACAGCTTAGAACCTTCCGCTTTAGTACAAAACTTTCTAACCCATCTCTCAAGGGCTATTAATTCTCTAGGCAATGCATTCTCAACCTTTGTGTTGTTTTATCCATCTTCTATAATCTCGCTGCTGGACCTTAATGCCTTATGTTCTTAATTTTTACTGTTTTAGAATGAAATGAAGACAGTAATGGTCTTTATAATGTGAGGGAGAGACTAGGGTGGAGGGTCTCTGACATGCAATGTCTACCTTGCTTAAGACATAAATGTTTCTTTACTCTGTATCTTTCTTTGACTGAAACTAAACAAGTTGCATCACATCAGTTTTCATCTTAGGTCTTTTTTCTCTTTTACTCCAGGGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGGGTGAGCACCTTTTGGATAGATAACACTTCTCTCATATTTCTCCTCATTCGTCTTTCCTCGAGTAACATAAGATTTTGATTTTGATCTTTTCCCTGCAGTTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTGGTGAGTTAATACTTATGCCTATCTCAAATTGGTATGGCTTCATTGGAGATGGAAGGGTATTTAAAGCTTTTGCAGCTCCTTCAAGCCATTTTTCCTTTAATTAAACTGATACATGTGGTTGAATTTTTTAACCCAAAATAAGGGAAGTTGTGTTAAATATTGTACTGAGGCATGCCTGATTTTGATTTTGGCTATGGTCATGTTTGTTTGTTCTTTTGATTGTGGTCCTTGATGGTTGTCTGAAGTTGCAATTTTGTCCTCAATACTTTGGGTTGTGCAACTCGCACTCCTATATGTTAATTTGTGCCCACGGATCCTGATTTTATCACATAAATGGCCATATTTTTTAAACTCACATATGATAATGGTTAGATGAACACTATTGTATACCAATCCATAGGGCGTCACTTTTTGGTTATGGTCAAATTTATGTCATAGTCTACTCTTTGGGAATAGAAACTTATTAAATCCGTTACGTTGGTGTTATGTAGTGCCTTGAACCTTCCAGCAAACCTCACTTTATAAGTCCAAGTCATGGATGTGCAAAATTTATATTATATCTATAAGAAGAAGCTAAGGTAGGTATTAGTGGATGTTTGATCTGGACCATGGCTAACAAGTGGCCATTATGGTGTAACTTGAAGGTTTAGATGATTGACAGCAAACAGATATAAGTTTCAGTTTTTGTATCATGCTACCTAGGTTCTAACATCTTCCCCTTTGTTTTCAGCTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAGTTCTGAAGTAGCAA</genome_strand>
        <mrna_strand>GTGCTTAGAAAAGAAGAAAAACAAGAGTAAGAGCGCAGCTGAATATCATTTGCGGGGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTG...........................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAA..................................................................................................................................AGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAAT....................................................................ATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGG..................................................................................................TTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAGTTCTGAAGTAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302592" ref_strand="+" ref_description="SGN-E302592 [cLEX-1-A19]">
      <seq>ttgtgcttagaaaagaagaaaaacaagagtaagagcgcagctgaatatcatttgcggggaacccatctgaattgttgagagaaggtggtgaatctaagtggaagatattgcaactctgatttcagaaagagacacactagcagcgagatgacatatgaattagatgaacaaaaaaaggttgggttaggtctcattggatttggcatctttttcacttttcttgccataatgttgttcttcgacaggggtttgcttgcgctggcaaatatacttttgttagcaggtgtagcacttctgttgggtttgcgttctacattacagctcttcaaagtaaactacaagggcacaatatcatttatgcttgggctctttctcatatttgttcgctggccagttgtgggtatcattgtggaaatatatggatgcattattctcttcggttgtttctggccatccatcaaggtttttcttttccagattcctgtatttggatggattctgcagtatcctgccctgcttcttgaccgctttcgtagctgactgactgatttgtctactccagtgggcctgtcggtaaaagaggaagaatatactgggctaggggtgtttgtcatgtgatgcagattgctgtcacctttatcttcaaatgtatattagatgttgattaggattataataatcatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="93053" stop="87779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92753" g_stop="92654" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92653" i_stop="92307" i_length="347">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92232" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="175" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92231" i_stop="92102" i_length="130">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92101" g_stop="92010" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="267" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92009" i_stop="91942" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91941" g_stop="91867" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="342" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91866" i_stop="89251" i_length="2616">
            <donor d_prob="0.433" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89250" g_stop="89153" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="440" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89152" i_stop="89055" i_length="98">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89054" g_stop="88979" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="516" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88978" i_stop="88249" i_length="730">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88248" g_stop="88079" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="686" r_length="170" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E302592" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92753" e_stop="92654"/>
          <exon e_start="92306" e_stop="92232"/>
          <exon e_start="92101" e_stop="92010"/>
          <exon e_start="91941" e_stop="91867"/>
          <exon e_start="89250" e_stop="89153"/>
          <exon e_start="89054" e_stop="88979"/>
          <exon e_start="88248" e_stop="88079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTTAGAAAAGAAGAAAAACAAGAGTAAGAGCGCAGCTGAATATCATTTGCGGGGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTGGTAATTTTCTCTTCTTCACCTACAATCAAATCGCCGATTTTATTTTATTTTTCTAATTTTGGTTGTCGATGACAGATTAGTATGCAAAATCTAAAAAATGGAACTTGGAATGTCTTTATAAATTGAATTTAGAAAGAAAACAGAGAAAAATTTATGCATGAATTTTTAGTTTTAGAAAAGATGGTATGCTAATGTTTTACTGTTTGGTAAAATAAAGAATGAGGTGCTTTAATTTGGCCGATCCCATCTGAACTCAATACTTTCTGCTGTAATGAATTATTCGTAACTACTATAACTTAAATTCGAAGTCTACTTTTACATTTACATTTATGCTAATCATTTTTTAGGAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAAGTAAGCAGATTTCATTTTGTGCTCAATTTGCATGCGCTTATGATAAACTTTATCTTCCAAGAGCCATAAATGCACTCTGTTTACTAATATAGTTTGGCATCTCACCTTCAAAATTTTATAAACCTTGCAGAGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAATGTAAGTAATCTGTAGTTATCTTGATTTATGAAACGAACAACTAATTTCTTCTTCTTATCTTGTCCTAGATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAGGTAGGGGCATTTGTGAGGAATACATCCTTTTGTCCTGTACTCCTGTTATAATTCACTCAATGCGTAGTAATAACATTTTCTGCTGCTTGCATTAGCAATTTCCTGTATACAAGAGCAATCTCATATTTCTGTGGAGTAGTTTAATAGATCTACCAGGTTTATCTCTTCCATGTGATCGATTTAGCATGTATCATGCTTGTTGCAATAACTAATCCTTAGGCATTGCTAAAGCTATGATTGTTAAATTCGAACACAATGTCGCGGTGTGGCTTAAATGCGACTCTGAATACTAGTTGCTCTCTAGCATGAGGTTATTTTGTTGTCTTTTTAGATTGATTTTCAATTTGTCTTCAGAGCCAAAGTTTCATTTTTCCTTTCTATATAAAAAAATACTGAAGAAGGAAAATTAAGAAGTTCAAGAATAGGTCACAAAGGAGCAAACCATGATAATTGTGTCTCCTAAATGCTCCAAAATTTTACAAAAGCATCCTTTAAGGGATGATAAGAGCACAAAATTTTAACTCATTATGTCTTAAAATATACTGAATGAAAGGCTACCAAGGCAAACCTTCTACTACTCTAGGAAAAGATTGTTAATATAAAAATGTCTAGTTACTAAGAGATATATCCGGTATATATATATATTAAGTGATTCAAAGGTTTCTTTTATTAGTTTTAATAATAATTTTGTTTAATTTAATAAAAAGAAGTCTATTTTGTACTCTATCTGTGTATTCTTTTTTATTCCTAAAAAATAGCAGATGAAATAGAAGGCTTAGAGGGGAGATAATGGAATTATGTGATTGGGTCTTCCAAAAACAAAGGAATAATCCGTTTTTCCATTAACTGATTTGATGGGTCCAACAAACAATTAATTATAACAAATATCTAAATTCTACATTAAAAAAAAATACTAGACTAAGATTCTAAATAAAGGATAATAAATAAAAGGGGTCCTCTTTTATTCGAAACGGAGAGGCTCCATTACTCTTTTGTGAGGCAAAATAAACTTCTTGTTTTAGTAAAGGAAAGAGTAAAAAGGTTCAATGCTCACAATCTCCCATATGTATTGCAACAACAAACCTAGTATAATCCCATAAGTGGGGTATGGGGAAGGTGGTGTGTACTAGGCCTTATCCCTACCTTGTGAAGATAGAGTTTCCTATAGACCCTTGTCTCAAGTATAGCACATCAAAAAAGGATAGTAGCTAAGAATCTGAAGAAGCATATCAATAGCTAGAATCTAAAGAAGAGAATAGTAGCAACAACTAATATGATAATTGAATCAAAGGAAACAATAGGTAATACTAAGATCGAAGAATAAGATAGTAGGAAAGCAATAATAATAAAACTGATAACGGAACTAGACAATGTTCGACTACCAACTAACCTTTATCCTAATTGCGACCTCCATATCTCCCTATCTAGGGTCATAATCTTAGTAAGCTGCAATTGAGCCATGTCAAGTCTTATCACCTCTGCATATCTCCCATACGTATTGATATTCTGTAATTTATAAATTACATCTTCCACAGATGTTTCTGGTTCCCACAAATGCAACTTAAGATAGTTACATGTCGAACTAACAGTTTAGCTATTAATTTGTTTCCAACTTCTTCTTTACTTGATCAGTTACAAACCCCACTGAAGTGTTCTTATTGCTCCCTGTTAGTTCGACTTATTTCTTTTGAGCTAGGTAGATAATGTATCTTCCATCTGTAGTCTATGATATAGACCTTTAGGTGGCTTAATTTCCATTTCTTGTGGTCATGACAACTAGGCTTAAGTTAAATCACTTAGCTCTTTCCGAAAAAGTACCGGGAGAAAGCACCGTCAGGGGTTTGAACCCCACCATAGACCCAAAAAAAAAAGTAGGGAGGGGAATTGCCGAGGGCTTCTCTTCTATGTGGTTCTGCATGATACTTGCGTTAATGTTTCAGAAGTGTTATTTGTAGTTTTGATGATGTAACAAACTCAGGGACCTTATGAAGGTACCCTGTTCTCAATATGAATCGTTCGTTGACTGTCAGCTGGAGAAAGTACAGAAAGTTGTGTAACCGATTTCCTTTTGCTTGTGAAGATTAGTGAAACGGTTGTGAAAATCCTGTGAGACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAAACTCCTCTGTTGTTAAACTGCATTTACTTTCTGCTATATCCTTATTTGTGTGTCAAGGGACCTGGTCCATTGACTAATAGTGGACGCACAGATTCTAACAAGAAGTTAACAGCTTAGAACCTTCCGCTTTAGTACAAAACTTTCTAACCCATCTCTCAAGGGCTATTAATTCTCTAGGCAATGCATTCTCAACCTTTGTGTTGTTTTATCCATCTTCTATAATCTCGCTGCTGGACCTTAATGCCTTATGTTCTTAATTTTTACTGTTTTAGAATGAAATGAAGACAGTAATGGTCTTTATAATGTGAGGGAGAGACTAGGGTGGAGGGTCTCTGACATGCAATGTCTACCTTGCTTAAGACATAAATGTTTCTTTACTCTGTATCTTTCTTTGACTGAAACTAAACAAGTTGCATCACATCAGTTTTCATCTTAGGTCTTTTTTCTCTTTTACTCCAGGGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGGGTGAGCACCTTTTGGATAGATAACACTTCTCTCATATTTCTCCTCATTCGTCTTTCCTCGAGTAACATAAGATTTTGATTTTGATCTTTTCCCTGCAGTTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTGGTGAGTTAATACTTATGCCTATCTCAAATTGGTATGGCTTCATTGGAGATGGAAGGGTATTTAAAGCTTTTGCAGCTCCTTCAAGCCATTTTTCCTTTAATTAAACTGATACATGTGGTTGAATTTTTTAACCCAAAATAAGGGAAGTTGTGTTAAATATTGTACTGAGGCATGCCTGATTTTGATTTTGGCTATGGTCATGTTTGTTTGTTCTTTTGATTGTGGTCCTTGATGGTTGTCTGAAGTTGCAATTTTGTCCTCAATACTTTGGGTTGTGCAACTCGCACTCCTATATGTTAATTTGTGCCCACGGATCCTGATTTTATCACATAAATGGCCATATTTTTTAAACTCACATATGATAATGGTTAGATGAACACTATTGTATACCAATCCATAGGGCGTCACTTTTTGGTTATGGTCAAATTTATGTCATAGTCTACTCTTTGGGAATAGAAACTTATTAAATCCGTTACGTTGGTGTTATGTAGTGCCTTGAACCTTCCAGCAAACCTCACTTTATAAGTCCAAGTCATGGATGTGCAAAATTTATATTATATCTATAAGAAGAAGCTAAGGTAGGTATTAGTGGATGTTTGATCTGGACCATGGCTAACAAGTGGCCATTATGGTGTAACTTGAAGGTTTAGATGATTGACAGCAAACAGATATAAGTTTCAGTTTTTGTATCATGCTACCTAGGTTCTAACATCTTCCCCTTTGTTTTCAGCTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAG</genome_strand>
        <mrna_strand>TTGTGCTTAGAAAAGAAGAAAAACAAGAGTAAGAGCGCAGCTGAATATCATTTGCGGGGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTG...........................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAA..................................................................................................................................AGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAAT....................................................................ATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGG..................................................................................................TTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTGGGCCTGTCGGTAAAAGAGGAAGAATATACTGGGCTAGGGGTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231213" ref_strand="+" ref_description="SGN-E231213 [cLED-5-B3]">
      <seq>ggaacccatctgaattgttgagagaaggtggtgaatctaagtggaagatattgcaactctgatttcagaaagagacacactagcagcgagatgacatatgaattagatgaacaaaaaaaggttgggttaggtctcattggatttggcatctttttcacttttcttgccataatgttgttcttcgacaggggtttgcttgcgctggcaaatatacttttgttagcaggtgtagcacttctgttgggtttgcgttctacattacagctcttcaaagtaaactacaagggcacaatatcatttatgcttgggctctttctcatatttgttcgctggccagttgtgggtatcattgtggaaatatatggatgcattattctcttcggttgtttctggccatccatcaaggtttttcttttccagattcctgtatttggatggattctgcagtatcctgccctgcttcttgaccgctttcgtagctgactgactgatttgtctactccagttatcctgtttgtaaaagaggaagaatatactgagctagggttgtttgtcatgtgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="92996" stop="87844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92696" g_stop="92654" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92653" i_stop="92307" i_length="347">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92232" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="118" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92231" i_stop="92102" i_length="130">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92101" g_stop="92010" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="210" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92009" i_stop="91942" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91941" g_stop="91867" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="285" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91866" i_stop="89251" i_length="2616">
            <donor d_prob="0.433" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89250" g_stop="89153" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="383" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89152" i_stop="89055" i_length="98">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89054" g_stop="88979" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="459" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88978" i_stop="88249" i_length="730">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88248" g_stop="88144" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="564" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E231213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92696" e_stop="92654"/>
          <exon e_start="92306" e_stop="92232"/>
          <exon e_start="92101" e_stop="92010"/>
          <exon e_start="91941" e_stop="91867"/>
          <exon e_start="89250" e_stop="89153"/>
          <exon e_start="89054" e_stop="88979"/>
          <exon e_start="88248" e_stop="88144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTGGTAATTTTCTCTTCTTCACCTACAATCAAATCGCCGATTTTATTTTATTTTTCTAATTTTGGTTGTCGATGACAGATTAGTATGCAAAATCTAAAAAATGGAACTTGGAATGTCTTTATAAATTGAATTTAGAAAGAAAACAGAGAAAAATTTATGCATGAATTTTTAGTTTTAGAAAAGATGGTATGCTAATGTTTTACTGTTTGGTAAAATAAAGAATGAGGTGCTTTAATTTGGCCGATCCCATCTGAACTCAATACTTTCTGCTGTAATGAATTATTCGTAACTACTATAACTTAAATTCGAAGTCTACTTTTACATTTACATTTATGCTAATCATTTTTTAGGAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAAGTAAGCAGATTTCATTTTGTGCTCAATTTGCATGCGCTTATGATAAACTTTATCTTCCAAGAGCCATAAATGCACTCTGTTTACTAATATAGTTTGGCATCTCACCTTCAAAATTTTATAAACCTTGCAGAGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAATGTAAGTAATCTGTAGTTATCTTGATTTATGAAACGAACAACTAATTTCTTCTTCTTATCTTGTCCTAGATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAGGTAGGGGCATTTGTGAGGAATACATCCTTTTGTCCTGTACTCCTGTTATAATTCACTCAATGCGTAGTAATAACATTTTCTGCTGCTTGCATTAGCAATTTCCTGTATACAAGAGCAATCTCATATTTCTGTGGAGTAGTTTAATAGATCTACCAGGTTTATCTCTTCCATGTGATCGATTTAGCATGTATCATGCTTGTTGCAATAACTAATCCTTAGGCATTGCTAAAGCTATGATTGTTAAATTCGAACACAATGTCGCGGTGTGGCTTAAATGCGACTCTGAATACTAGTTGCTCTCTAGCATGAGGTTATTTTGTTGTCTTTTTAGATTGATTTTCAATTTGTCTTCAGAGCCAAAGTTTCATTTTTCCTTTCTATATAAAAAAATACTGAAGAAGGAAAATTAAGAAGTTCAAGAATAGGTCACAAAGGAGCAAACCATGATAATTGTGTCTCCTAAATGCTCCAAAATTTTACAAAAGCATCCTTTAAGGGATGATAAGAGCACAAAATTTTAACTCATTATGTCTTAAAATATACTGAATGAAAGGCTACCAAGGCAAACCTTCTACTACTCTAGGAAAAGATTGTTAATATAAAAATGTCTAGTTACTAAGAGATATATCCGGTATATATATATATTAAGTGATTCAAAGGTTTCTTTTATTAGTTTTAATAATAATTTTGTTTAATTTAATAAAAAGAAGTCTATTTTGTACTCTATCTGTGTATTCTTTTTTATTCCTAAAAAATAGCAGATGAAATAGAAGGCTTAGAGGGGAGATAATGGAATTATGTGATTGGGTCTTCCAAAAACAAAGGAATAATCCGTTTTTCCATTAACTGATTTGATGGGTCCAACAAACAATTAATTATAACAAATATCTAAATTCTACATTAAAAAAAAATACTAGACTAAGATTCTAAATAAAGGATAATAAATAAAAGGGGTCCTCTTTTATTCGAAACGGAGAGGCTCCATTACTCTTTTGTGAGGCAAAATAAACTTCTTGTTTTAGTAAAGGAAAGAGTAAAAAGGTTCAATGCTCACAATCTCCCATATGTATTGCAACAACAAACCTAGTATAATCCCATAAGTGGGGTATGGGGAAGGTGGTGTGTACTAGGCCTTATCCCTACCTTGTGAAGATAGAGTTTCCTATAGACCCTTGTCTCAAGTATAGCACATCAAAAAAGGATAGTAGCTAAGAATCTGAAGAAGCATATCAATAGCTAGAATCTAAAGAAGAGAATAGTAGCAACAACTAATATGATAATTGAATCAAAGGAAACAATAGGTAATACTAAGATCGAAGAATAAGATAGTAGGAAAGCAATAATAATAAAACTGATAACGGAACTAGACAATGTTCGACTACCAACTAACCTTTATCCTAATTGCGACCTCCATATCTCCCTATCTAGGGTCATAATCTTAGTAAGCTGCAATTGAGCCATGTCAAGTCTTATCACCTCTGCATATCTCCCATACGTATTGATATTCTGTAATTTATAAATTACATCTTCCACAGATGTTTCTGGTTCCCACAAATGCAACTTAAGATAGTTACATGTCGAACTAACAGTTTAGCTATTAATTTGTTTCCAACTTCTTCTTTACTTGATCAGTTACAAACCCCACTGAAGTGTTCTTATTGCTCCCTGTTAGTTCGACTTATTTCTTTTGAGCTAGGTAGATAATGTATCTTCCATCTGTAGTCTATGATATAGACCTTTAGGTGGCTTAATTTCCATTTCTTGTGGTCATGACAACTAGGCTTAAGTTAAATCACTTAGCTCTTTCCGAAAAAGTACCGGGAGAAAGCACCGTCAGGGGTTTGAACCCCACCATAGACCCAAAAAAAAAAGTAGGGAGGGGAATTGCCGAGGGCTTCTCTTCTATGTGGTTCTGCATGATACTTGCGTTAATGTTTCAGAAGTGTTATTTGTAGTTTTGATGATGTAACAAACTCAGGGACCTTATGAAGGTACCCTGTTCTCAATATGAATCGTTCGTTGACTGTCAGCTGGAGAAAGTACAGAAAGTTGTGTAACCGATTTCCTTTTGCTTGTGAAGATTAGTGAAACGGTTGTGAAAATCCTGTGAGACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAAACTCCTCTGTTGTTAAACTGCATTTACTTTCTGCTATATCCTTATTTGTGTGTCAAGGGACCTGGTCCATTGACTAATAGTGGACGCACAGATTCTAACAAGAAGTTAACAGCTTAGAACCTTCCGCTTTAGTACAAAACTTTCTAACCCATCTCTCAAGGGCTATTAATTCTCTAGGCAATGCATTCTCAACCTTTGTGTTGTTTTATCCATCTTCTATAATCTCGCTGCTGGACCTTAATGCCTTATGTTCTTAATTTTTACTGTTTTAGAATGAAATGAAGACAGTAATGGTCTTTATAATGTGAGGGAGAGACTAGGGTGGAGGGTCTCTGACATGCAATGTCTACCTTGCTTAAGACATAAATGTTTCTTTACTCTGTATCTTTCTTTGACTGAAACTAAACAAGTTGCATCACATCAGTTTTCATCTTAGGTCTTTTTTCTCTTTTACTCCAGGGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGGGTGAGCACCTTTTGGATAGATAACACTTCTCTCATATTTCTCCTCATTCGTCTTTCCTCGAGTAACATAAGATTTTGATTTTGATCTTTTCCCTGCAGTTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTGGTGAGTTAATACTTATGCCTATCTCAAATTGGTATGGCTTCATTGGAGATGGAAGGGTATTTAAAGCTTTTGCAGCTCCTTCAAGCCATTTTTCCTTTAATTAAACTGATACATGTGGTTGAATTTTTTAACCCAAAATAAGGGAAGTTGTGTTAAATATTGTACTGAGGCATGCCTGATTTTGATTTTGGCTATGGTCATGTTTGTTTGTTCTTTTGATTGTGGTCCTTGATGGTTGTCTGAAGTTGCAATTTTGTCCTCAATACTTTGGGTTGTGCAACTCGCACTCCTATATGTTAATTTGTGCCCACGGATCCTGATTTTATCACATAAATGGCCATATTTTTTAAACTCACATATGATAATGGTTAGATGAACACTATTGTATACCAATCCATAGGGCGTCACTTTTTGGTTATGGTCAAATTTATGTCATAGTCTACTCTTTGGGAATAGAAACTTATTAAATCCGTTACGTTGGTGTTATGTAGTGCCTTGAACCTTCCAGCAAACCTCACTTTATAAGTCCAAGTCATGGATGTGCAAAATTTATATTATATCTATAAGAAGAAGCTAAGGTAGGTATTAGTGGATGTTTGATCTGGACCATGGCTAACAAGTGGCCATTATGGTGTAACTTGAAGGTTTAGATGATTGACAGCAAACAGATATAAGTTTCAGTTTTTGTATCATGCTACCTAGGTTCTAACATCTTCCCCTTTGTTTTCAGCTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGC</genome_strand>
        <mrna_strand>GGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTG...........................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAA..................................................................................................................................AGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAAT....................................................................ATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGG..................................................................................................TTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231596" ref_strand="+" ref_description="SGN-E231596 [cLED-4-P12]">
      <seq>ggaacccatctgaattgttgagagaaggtggtgaatctaagtggaagatattgcaactctgatttcagaaagagacacactagcagcgagatgacatatgaattagatgaacaaaaaaaggttgggttaggtctcattggatttggcatctttttcacttttcttgccataatgttgttcttcgacaggggtttgcttgcgctggcaaatatacttttgttagcaggtgtagcacttctgttgggtttgcgttctacattacagctcttcaaagtaaactacaagggcacaatatcatttatgcttgggctctttctcatatttgttcgctggccagttgtgggtatcattgtggaaatatatggatgcattattctcttcggttgtttctggccatccatcaaggtttttcttttccagattcctgtatttggatggattctgcagtatcctgccctgcttcttgaccgctttcgtagctgactgactgatttgtctactccagttatcctgtttgtaaaagaggaagaatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="92996" stop="87871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92696" g_stop="92654" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92653" i_stop="92307" i_length="347">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92232" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="118" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92231" i_stop="92102" i_length="130">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92101" g_stop="92010" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="210" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92009" i_stop="91942" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91941" g_stop="91867" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="285" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91866" i_stop="89251" i_length="2616">
            <donor d_prob="0.433" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89250" g_stop="89153" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="383" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89152" i_stop="89055" i_length="98">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89054" g_stop="88979" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="459" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88978" i_stop="88249" i_length="730">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88248" g_stop="88171" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="537" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-E231596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92696" e_stop="92654"/>
          <exon e_start="92306" e_stop="92232"/>
          <exon e_start="92101" e_stop="92010"/>
          <exon e_start="91941" e_stop="91867"/>
          <exon e_start="89250" e_stop="89153"/>
          <exon e_start="89054" e_stop="88979"/>
          <exon e_start="88248" e_stop="88171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTGGTAATTTTCTCTTCTTCACCTACAATCAAATCGCCGATTTTATTTTATTTTTCTAATTTTGGTTGTCGATGACAGATTAGTATGCAAAATCTAAAAAATGGAACTTGGAATGTCTTTATAAATTGAATTTAGAAAGAAAACAGAGAAAAATTTATGCATGAATTTTTAGTTTTAGAAAAGATGGTATGCTAATGTTTTACTGTTTGGTAAAATAAAGAATGAGGTGCTTTAATTTGGCCGATCCCATCTGAACTCAATACTTTCTGCTGTAATGAATTATTCGTAACTACTATAACTTAAATTCGAAGTCTACTTTTACATTTACATTTATGCTAATCATTTTTTAGGAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAAGTAAGCAGATTTCATTTTGTGCTCAATTTGCATGCGCTTATGATAAACTTTATCTTCCAAGAGCCATAAATGCACTCTGTTTACTAATATAGTTTGGCATCTCACCTTCAAAATTTTATAAACCTTGCAGAGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAATGTAAGTAATCTGTAGTTATCTTGATTTATGAAACGAACAACTAATTTCTTCTTCTTATCTTGTCCTAGATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAGGTAGGGGCATTTGTGAGGAATACATCCTTTTGTCCTGTACTCCTGTTATAATTCACTCAATGCGTAGTAATAACATTTTCTGCTGCTTGCATTAGCAATTTCCTGTATACAAGAGCAATCTCATATTTCTGTGGAGTAGTTTAATAGATCTACCAGGTTTATCTCTTCCATGTGATCGATTTAGCATGTATCATGCTTGTTGCAATAACTAATCCTTAGGCATTGCTAAAGCTATGATTGTTAAATTCGAACACAATGTCGCGGTGTGGCTTAAATGCGACTCTGAATACTAGTTGCTCTCTAGCATGAGGTTATTTTGTTGTCTTTTTAGATTGATTTTCAATTTGTCTTCAGAGCCAAAGTTTCATTTTTCCTTTCTATATAAAAAAATACTGAAGAAGGAAAATTAAGAAGTTCAAGAATAGGTCACAAAGGAGCAAACCATGATAATTGTGTCTCCTAAATGCTCCAAAATTTTACAAAAGCATCCTTTAAGGGATGATAAGAGCACAAAATTTTAACTCATTATGTCTTAAAATATACTGAATGAAAGGCTACCAAGGCAAACCTTCTACTACTCTAGGAAAAGATTGTTAATATAAAAATGTCTAGTTACTAAGAGATATATCCGGTATATATATATATTAAGTGATTCAAAGGTTTCTTTTATTAGTTTTAATAATAATTTTGTTTAATTTAATAAAAAGAAGTCTATTTTGTACTCTATCTGTGTATTCTTTTTTATTCCTAAAAAATAGCAGATGAAATAGAAGGCTTAGAGGGGAGATAATGGAATTATGTGATTGGGTCTTCCAAAAACAAAGGAATAATCCGTTTTTCCATTAACTGATTTGATGGGTCCAACAAACAATTAATTATAACAAATATCTAAATTCTACATTAAAAAAAAATACTAGACTAAGATTCTAAATAAAGGATAATAAATAAAAGGGGTCCTCTTTTATTCGAAACGGAGAGGCTCCATTACTCTTTTGTGAGGCAAAATAAACTTCTTGTTTTAGTAAAGGAAAGAGTAAAAAGGTTCAATGCTCACAATCTCCCATATGTATTGCAACAACAAACCTAGTATAATCCCATAAGTGGGGTATGGGGAAGGTGGTGTGTACTAGGCCTTATCCCTACCTTGTGAAGATAGAGTTTCCTATAGACCCTTGTCTCAAGTATAGCACATCAAAAAAGGATAGTAGCTAAGAATCTGAAGAAGCATATCAATAGCTAGAATCTAAAGAAGAGAATAGTAGCAACAACTAATATGATAATTGAATCAAAGGAAACAATAGGTAATACTAAGATCGAAGAATAAGATAGTAGGAAAGCAATAATAATAAAACTGATAACGGAACTAGACAATGTTCGACTACCAACTAACCTTTATCCTAATTGCGACCTCCATATCTCCCTATCTAGGGTCATAATCTTAGTAAGCTGCAATTGAGCCATGTCAAGTCTTATCACCTCTGCATATCTCCCATACGTATTGATATTCTGTAATTTATAAATTACATCTTCCACAGATGTTTCTGGTTCCCACAAATGCAACTTAAGATAGTTACATGTCGAACTAACAGTTTAGCTATTAATTTGTTTCCAACTTCTTCTTTACTTGATCAGTTACAAACCCCACTGAAGTGTTCTTATTGCTCCCTGTTAGTTCGACTTATTTCTTTTGAGCTAGGTAGATAATGTATCTTCCATCTGTAGTCTATGATATAGACCTTTAGGTGGCTTAATTTCCATTTCTTGTGGTCATGACAACTAGGCTTAAGTTAAATCACTTAGCTCTTTCCGAAAAAGTACCGGGAGAAAGCACCGTCAGGGGTTTGAACCCCACCATAGACCCAAAAAAAAAAGTAGGGAGGGGAATTGCCGAGGGCTTCTCTTCTATGTGGTTCTGCATGATACTTGCGTTAATGTTTCAGAAGTGTTATTTGTAGTTTTGATGATGTAACAAACTCAGGGACCTTATGAAGGTACCCTGTTCTCAATATGAATCGTTCGTTGACTGTCAGCTGGAGAAAGTACAGAAAGTTGTGTAACCGATTTCCTTTTGCTTGTGAAGATTAGTGAAACGGTTGTGAAAATCCTGTGAGACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAAACTCCTCTGTTGTTAAACTGCATTTACTTTCTGCTATATCCTTATTTGTGTGTCAAGGGACCTGGTCCATTGACTAATAGTGGACGCACAGATTCTAACAAGAAGTTAACAGCTTAGAACCTTCCGCTTTAGTACAAAACTTTCTAACCCATCTCTCAAGGGCTATTAATTCTCTAGGCAATGCATTCTCAACCTTTGTGTTGTTTTATCCATCTTCTATAATCTCGCTGCTGGACCTTAATGCCTTATGTTCTTAATTTTTACTGTTTTAGAATGAAATGAAGACAGTAATGGTCTTTATAATGTGAGGGAGAGACTAGGGTGGAGGGTCTCTGACATGCAATGTCTACCTTGCTTAAGACATAAATGTTTCTTTACTCTGTATCTTTCTTTGACTGAAACTAAACAAGTTGCATCACATCAGTTTTCATCTTAGGTCTTTTTTCTCTTTTACTCCAGGGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGGGTGAGCACCTTTTGGATAGATAACACTTCTCTCATATTTCTCCTCATTCGTCTTTCCTCGAGTAACATAAGATTTTGATTTTGATCTTTTCCCTGCAGTTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTGGTGAGTTAATACTTATGCCTATCTCAAATTGGTATGGCTTCATTGGAGATGGAAGGGTATTTAAAGCTTTTGCAGCTCCTTCAAGCCATTTTTCCTTTAATTAAACTGATACATGTGGTTGAATTTTTTAACCCAAAATAAGGGAAGTTGTGTTAAATATTGTACTGAGGCATGCCTGATTTTGATTTTGGCTATGGTCATGTTTGTTTGTTCTTTTGATTGTGGTCCTTGATGGTTGTCTGAAGTTGCAATTTTGTCCTCAATACTTTGGGTTGTGCAACTCGCACTCCTATATGTTAATTTGTGCCCACGGATCCTGATTTTATCACATAAATGGCCATATTTTTTAAACTCACATATGATAATGGTTAGATGAACACTATTGTATACCAATCCATAGGGCGTCACTTTTTGGTTATGGTCAAATTTATGTCATAGTCTACTCTTTGGGAATAGAAACTTATTAAATCCGTTACGTTGGTGTTATGTAGTGCCTTGAACCTTCCAGCAAACCTCACTTTATAAGTCCAAGTCATGGATGTGCAAAATTTATATTATATCTATAAGAAGAAGCTAAGGTAGGTATTAGTGGATGTTTGATCTGGACCATGGCTAACAAGTGGCCATTATGGTGTAACTTGAAGGTTTAGATGATTGACAGCAAACAGATATAAGTTTCAGTTTTTGTATCATGCTACCTAGGTTCTAACATCTTCCCCTTTGTTTTCAGCTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACT</genome_strand>
        <mrna_strand>GGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTG...........................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAA..................................................................................................................................AGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAAT....................................................................ATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGG..................................................................................................TTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>295</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="15635" PGL_stop="10288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15635" e_stop="15526"/>
            <exon e_start="15444" e_stop="15312"/>
            <exon e_start="15241" e_stop="15090"/>
            <exon e_start="15022" e_stop="14827"/>
            <exon e_start="14649" e_stop="14531"/>
            <exon e_start="14433" e_stop="14217"/>
            <exon e_start="13734" e_stop="13639"/>
            <exon e_start="13555" e_stop="13382"/>
            <exon e_start="13070" e_stop="12954"/>
            <exon e_start="12855" e_stop="12689"/>
            <exon e_start="11932" e_stop="11708"/>
            <exon e_start="11427" e_stop="11106"/>
            <exon e_start="11008" e_stop="10764"/>
            <exon e_start="10697" e_stop="10559"/>
            <exon e_start="10468" e_stop="10288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.816" e_score="0.939"/>
          <exon-intron don_prob="0.911" acc_prob="0.982" e_score="0.955"/>
          <exon-intron don_prob="0.972" acc_prob="0.928" e_score="0.967"/>
          <exon-intron don_prob="0.980" acc_prob="0.994" e_score="0.949"/>
          <exon-intron don_prob="0.826" acc_prob="0.994" e_score="0.983"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="0.982"/>
          <exon-intron don_prob="0.511" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.106" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.169" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="0.831" e_score="0.984"/>
          <exon-intron don_prob="0.974" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.685" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="15635" e_stop="15526" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.816">
            <gDNA_intron_boundary i_start="15525" i_stop="15445" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="15444" e_stop="15312" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.911" acc_prob="0.982">
            <gDNA_intron_boundary i_start="15311" i_stop="15242" i_length="70"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="15241" e_stop="15090" e_length="152"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.928">
            <gDNA_intron_boundary i_start="15089" i_stop="15023" i_length="67"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="15022" e_stop="14827" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14826" i_stop="14650" i_length="177"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="14649" e_stop="14531" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.826" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14530" i_stop="14434" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="14433" e_stop="14217" e_length="217"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14216" i_stop="13735" i_length="482"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13734" e_stop="13639" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.511" acc_prob="0.963">
            <gDNA_intron_boundary i_start="13638" i_stop="13556" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13555" e_stop="13382" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.868" acc_prob="0.106">
            <gDNA_intron_boundary i_start="13381" i_stop="13071" i_length="311"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13070" e_stop="12954" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.857" acc_prob="0.961">
            <gDNA_intron_boundary i_start="12953" i_stop="12856" i_length="98"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="12855" e_stop="12689" e_length="167"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.169">
            <gDNA_intron_boundary i_start="12688" i_stop="11933" i_length="756"/>
          </intron>
          <exon e_serial="11" e_score="0.987">
            <gDNA_exon_boundary e_start="11932" e_stop="11708" e_length="225"/>
          </exon>
          <intron i_serial="11" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11707" i_stop="11428" i_length="280"/>
          </intron>
          <exon e_serial="12" e_score="0.984">
            <gDNA_exon_boundary e_start="11427" e_stop="11106" e_length="322"/>
          </exon>
          <intron i_serial="12" don_prob="0.996" acc_prob="0.831">
            <gDNA_intron_boundary i_start="11105" i_stop="11009" i_length="97"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="11008" e_stop="10764" e_length="245"/>
          </exon>
          <intron i_serial="13" don_prob="0.974" acc_prob="0.930">
            <gDNA_intron_boundary i_start="10763" i_stop="10698" i_length="66"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="10697" e_stop="10559" e_length="139"/>
          </exon>
          <intron i_serial="14" don_prob="0.685" acc_prob="0.965">
            <gDNA_intron_boundary i_start="10558" i_stop="10469" i_length="90"/>
          </intron>
          <exon e_serial="15" e_score="0.961">
            <gDNA_exon_boundary e_start="10468" e_stop="10288" e_length="181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15635" stop="15526"/>
              <exon start="15444" stop="15312"/>
              <exon start="15241" stop="15090"/>
              <exon start="15022" stop="14827"/>
              <exon start="14649" stop="14532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15624" stop="15526"/>
              <exon start="15444" stop="15312"/>
              <exon start="15241" stop="15090"/>
              <exon start="15022" stop="14827"/>
              <exon start="14649" stop="14531"/>
              <exon start="14433" stop="14217"/>
              <exon start="13734" stop="13639"/>
              <exon start="13555" stop="13382"/>
              <exon start="13070" stop="12954"/>
              <exon start="12855" stop="12689"/>
              <exon start="11932" stop="11708"/>
              <exon start="11427" stop="11106"/>
              <exon start="11008" stop="10764"/>
              <exon start="10697" stop="10559"/>
              <exon start="10468" stop="10428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15624" stop="15526"/>
              <exon start="15444" stop="15312"/>
              <exon start="15241" stop="15090"/>
              <exon start="15022" stop="14827"/>
              <exon start="14649" stop="14614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15109" stop="15090"/>
              <exon start="15022" stop="14827"/>
              <exon start="14649" stop="14531"/>
              <exon start="14433" stop="14217"/>
              <exon start="13734" stop="13639"/>
              <exon start="13555" stop="13475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14900" stop="14827"/>
              <exon start="14649" stop="14531"/>
              <exon start="14433" stop="14217"/>
              <exon start="13734" stop="13639"/>
              <exon start="13555" stop="13382"/>
              <exon start="13070" stop="12982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13726" stop="13639"/>
              <exon start="13555" stop="13382"/>
              <exon start="13070" stop="12954"/>
              <exon start="12855" stop="12689"/>
              <exon start="11932" stop="11794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13722" stop="13639"/>
              <exon start="13555" stop="13382"/>
              <exon start="13070" stop="12954"/>
              <exon start="12855" stop="12702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11274" stop="11106"/>
              <exon start="11008" stop="10764"/>
              <exon start="10697" stop="10559"/>
              <exon start="10468" stop="10288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAATTGGAAAATGTCGAATCCAAAGTTGTCAAGAATACCTAGTATGAGAGAGAGAGTTGAGGATACTCTCTCTGCTCACCGTAATCAGCTAGTGGCTCTCCTATCCAG : ATATGTGGCGCAGGGGAAGGGGATATTGCAGCCTCATCATTTAATTGATGAGCTGAATAATGCTGTATGTGATGACACTGCTTGTGAAAAGCTGAAAGAAGGCCCCTTTTGTGAAATCTTGAAATCTACTCAG : GAAGCCATTGTGCTCCCACCATTTGTTGCTATAGCAGTTCGTCCAAGGCCAGGTGTTTGGGAATATGTTCGTGTGAACGTATATGATCTGAGCGTTGAACAATTGACGGTTCCTGAATATCTCCGTTTCAAAGAAGAACTTGTCGATGGAGA : GGATCATAATCATCTTTTTGTGCTTGAGCTGGATTTTGAGCCATTTAATGCATCAGTTCCTCGTCCCTCACGCTCTTCATCCATTGGAAATGGAGTACAATTCCTCAATCGTCATTTGTCCTCAAATATGTTTCGCAGCAACGAATCCCTCGACCCATTACTTGATTTCCTTAGAGGACACAATCATAAAGGGAAT : GTCTTGATGTTGAATGAACGTATACAGCGAATCTCCAGGCTGGAGTCGTCTCTTAATAAGGCAGATGATTATCTCTCAAAGCTACCACCAGATACACCCTATACTGACTTTGAATATGC : ATTGCAGGAAATGGGCTTTGAGAAAGGTTGGGGTGATACTGCAAATCGTGTTTTGGAGACTATGCATCTGCTTTCTGACATTCTTCAGGCTCCTGATCCCTCAACCTTAGAGACTTTTCTTGGTAGATTACCAATGGTGTTTAATGTTGTCATATTATCTCCTCATGGATACTTTGGTCAAGCAAATGTCTTGGGTTTGCCGGACACTGGTGGACAG : GTTGTCTATATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTTCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAGAATCCTTGTT : GTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCGCATATTTTACGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAG : GACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTGCCTGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCTGTTAGCATATAAAATGGGCATCACACAG : TGTACCATTGCTCATGCTTTGGAGAAAACAAAGTATCCTGATTCTGACATCTATTGGAAAAAGTTTGAGGAGAAATATCATTTTTCATGTCAGTTTACTGCTGACCTACTGTCAATGAATCATTCAGATTTCATAATCACTAGTACCTATCAAGAGATTGCAGGAAC : GAAGAATACTGTTGGTCAGTACGAGAGTCATACTGCTTTCACTCTCCCAGGCCTATATCGTGTTGTCCATGGCATTGATGTCTTCGATCCCAAATTCAATATAGTGTCTCCTGGAGCTGACATGACAATTTACTTCCCATATTTTGACAAGGAAAAGAGACTGACATCTTTGCATCCCTCGATTGAGAAGTTGTTATTTGATCCTGAGCAGAATGAAGTGCATAT : AGGCAGCCTGAATGATCAATCAAAACCGATAATTTTTTCAATGGCAAGGCTTGACCGGGTAAAGAACATTACCGGATTAGTTGAGTGCTATGCTAAAAATGCCACACTCAGGGAACTGGCTAACCTTGTTGTAGTAGCTGGATACAACGATGTAAAGAAATCCAATGATAGAGAAGAAATAGCAGAAATTGAGAAGATGCATGCTCTTATGAAGGAACATAACTTGGATGGTCAATTCAGATGGATATCAGCCCAAATGAACCGGGCACGTAATGGTGAGCTCTATCGCTATATAGCTGACAAGAGAGGTATATTTGTTCAG : CCTGCGTATTATGAAGCGTTTGGACTGACGGTGGTTGAAGCTATGACTTGTGGTCTTCCAACATTTGCAACTTGTCATGGTGGACCTATGGAGATCATTCAGGACGGTGTATCCGGGTACCATATAGATCCTTATCATCCCAATAAAGCTGCTGAGCTCATGGTAGAATTCTTCCAACGATGCGAACAAAATCCTACTCACTGGGAAAATATATCTGCATCTGGCCTACAAAGGATTCTCGACAG : GTATACATGGAAAATTTACTCGGAGAGGCTGATGACTTTGGCTGGTGTATATGGTTTCTGGAAGCTTGTTTCAAAACTCGAGAGGCGTGAAACTAGACGATACCTCGAGATGTTCTACATTCTCAAGTTCCGTGAGTTG : GTAAAATCTGTTCCTCTAGCAGTTGATGAGAAGCAGTGAGGATTTTGCAAAGGAATAAATAACGTGGAGCATACCACTCTATCTATGATAATTTTTTTTTTGTTCTTCTTGTTTGTTGTGTAGTTAAACTAATTAAGTGCACTGAGTTTCTAATAGATCTCAAATAGCTAAACGTTACTAT</gDNA_template>
            <first_frame> C  N  W  K  M  S  N  P  K  L  S  R  I  P  S  M  R  E  R  V  E  D  T  L  S  A  H  R  N  Q  L  V  A  L  L  S  R :   Y  V  A  Q  G  K  G  I  L  Q  P  H  H  L  I  D  E  L  N  N  A  V  C  D  D  T  A  C  E  K  L  K  E  G  P  F  C  E  I  L  K  S  T  Q  :  E  A  I  V  L  P  P  F  V  A  I  A  V  R  P  R  P  G  V  W  E  Y  V  R  V  N  V  Y  D  L  S  V  E  Q  L  T  V  P  E  Y  L  R  F  K  E  E  L  V  D  G  E :   D  H  N  H  L  F  V  L  E  L  D  F  E  P  F  N  A  S  V  P  R  P  S  R  S  S  S  I  G  N  G  V  Q  F  L  N  R  H  L  S  S  N  M  F  R  S  N  E  S  L  D  P  L  L  D  F  L  R  G  H  N  H  K  G  N  :  V  L  M  L  N  E  R  I  Q  R  I  S  R  L  E  S  S  L  N  K  A  D  D  Y  L  S  K  L  P  P  D  T  P  Y  T  D  F  E  Y  A :   L  Q  E  M  G  F  E  K  G  W  G  D  T  A  N  R  V  L  E  T  M  H  L  L  S  D  I  L  Q  A  P  D  P  S  T  L  E  T  F  L  G  R  L  P  M  V  F  N  V  V  I  L  S  P  H  G  Y  F  G  Q  A  N  V  L  G  L  P  D  T  G  G  Q  :  V  V  Y  I  L  D  Q  V  R  A  L  E  A  E  M  L  L  R  I  K  Q  Q  G  L  N  F  K  P  R  I  L  V  :  V  T  R  L  I  P  D  A  K  G  T  T  C  N  Q  R  L  E  R  I  S  G  T  E  Y  S  H  I  L  R  V  P  F  R  T  E  N  G  I  L  H  K  W  I  S  R  F  D  V  W  P  Y  L  E  K  F  T  E  :  D  V  A  G  E  M  S  A  E  L  Q  G  V  P  D  L  I  I  G  N  Y  S  D  G  N  L  V  A  S  L  L  A  Y  K  M  G  I  T  Q  :  C  T  I  A  H  A  L  E  K  T  K  Y  P  D  S  D  I  Y  W  K  K  F  E  E  K  Y  H  F  S  C  Q  F  T  A  D  L  L  S  M  N  H  S  D  F  I  I  T  S  T  Y  Q  E  I  A  G  T :   K  N  T  V  G  Q  Y  E  S  H  T  A  F  T  L  P  G  L  Y  R  V  V  H  G  I  D  V  F  D  P  K  F  N  I  V  S  P  G  A  D  M  T  I  Y  F  P  Y  F  D  K  E  K  R  L  T  S  L  H  P  S  I  E  K  L  L  F  D  P  E  Q  N  E  V  H  I :   G  S  L  N  D  Q  S  K  P  I  I  F  S  M  A  R  L  D  R  V  K  N  I  T  G  L  V  E  C  Y  A  K  N  A  T  L  R  E  L  A  N  L  V  V  V  A  G  Y  N  D  V  K  K  S  N  D  R  E  E  I  A  E  I  E  K  M  H  A  L  M  K  E  H  N  L  D  G  Q  F  R  W  I  S  A  Q  M  N  R  A  R  N  G  E  L  Y  R  Y  I  A  D  K  R  G  I  F  V  Q  :  P  A  Y  Y  E  A  F  G  L  T  V  V  E  A  M  T  C  G  L  P  T  F  A  T  C  H  G  G  P  M  E  I  I  Q  D  G  V  S  G  Y  H  I  D  P  Y  H  P  N  K  A  A  E  L  M  V  E  F  F  Q  R  C  E  Q  N  P  T  H  W  E  N  I  S  A  S  G  L  Q  R  I  L  D  R :   Y  T  W  K  I  Y  S  E  R  L  M  T  L  A  G  V  Y  G  F  W  K  L  V  S  K  L  E  R  R  E  T  R  R  Y  L  E  M  F  Y  I  L  K  F  R  E  L  :  V  K  S  V  P  L  A  V  D  E  K  Q  *  G  F  C  K  G  I  N  N  V  E  H  T  T  L  S  M  I  I  F  F  L  F  F  L  F  V  V  *  L  N  *  L  S  A  L  S  F  *  *  I  S  N  S  *  T  L  L  </first_frame>
            <second_frame>  V  I  G  K  C  R  I  Q  S  C  Q  E  Y  L  V  *  E  R  E  L  R  I  L  S  L  L  T  V  I  S  *  W  L  S  Y  P   : D  M  W  R  R  G  R  G  Y  C  S  L  I  I  *  L  M  S  *  I  M  L  Y  V  M  T  L  L  V  K  S  *  K  K  A  P  F  V  K  S  *  N  L  L  R :   K  P  L  C  S  H  H  L  L  L  *  Q  F  V  Q  G  Q  V  F  G  N  M  F  V  *  T  Y  M  I  *  A  L  N  N  *  R  F  L  N  I  S  V  S  K  K  N  L  S  M  E   : R  I  I  I  I  F  L  C  L  S  W  I  L  S  H  L  M  H  Q  F  L  V  P  H  A  L  H  P  L  E  M  E  Y  N  S  S  I  V  I  C  P  Q  I  C  F  A  A  T  N  P  S  T  H  Y  L  I  S  L  E  D  T  I  I  K  G  M :   S  *  C  *  M  N  V  Y  S  E  S  P  G  W  S  R  L  L  I  R  Q  M  I  I  S  Q  S  Y  H  Q  I  H  P  I  L  T  L  N  M   : H  C  R  K  W  A  L  R  K  V  G  V  I  L  Q  I  V  F  W  R  L  C  I  C  F  L  T  F  F  R  L  L  I  P  Q  P  *  R  L  F  L  V  D  Y  Q  W  C  L  M  L  S  Y  Y  L  L  M  D  T  L  V  K  Q  M  S  W  V  C  R  T  L  V  D  R :   L  S  I  Y  W  I  K  C  V  L  W  R  P  K  C  F  L  E  *  S  N  K  D  S  T  S  S  L  E  S  L  L :   S  P  D  *  Y  L  M  L  K  E  P  R  A  T  S  G  W  R  E  L  V  E  L  N  T  R  I  F  Y  V  S  L  L  G  Q  K  M  E  S  F  I  N  G  Y  L  G  L  M  Y  G  L  T  W  R  S  L  L  R :   T  W  Q  V  K  C  L  L  S  S  R  E  C  L  I  *  L  L  A  T  T  V  M  E  I  *  L  P  P  C  *  H  I  K  W  A  S  H  S :   V  P  L  L  M  L  W  R  K  Q  S  I  L  I  L  T  S  I  G  K  S  L  R  R  N  I  I  F  H  V  S  L  L  L  T  Y  C  Q  *  I  I  Q  I  S  *  S  L  V  P  I  K  R  L  Q  E   : R  R  I  L  L  V  S  T  R  V  I  L  L  S  L  S  Q  A  Y  I  V  L  S  M  A  L  M  S  S  I  P  N  S  I  *  C  L  L  E  L  T  *  Q  F  T  S  H  I  L  T  R  K  R  D  *  H  L  C  I  P  R  L  R  S  C  Y  L  I  L  S  R  M  K  C  I   : *  A  A  *  M  I  N  Q  N  R  *  F  F  Q  W  Q  G  L  T  G  *  R  T  L  P  D  *  L  S  A  M  L  K  M  P  H  S  G  N  W  L  T  L  L  *  *  L  D  T  T  M  *  R  N  P  M  I  E  K  K  *  Q  K  L  R  R  C  M  L  L  *  R  N  I  T  W  M  V  N  S  D  G  Y  Q  P  K  *  T  G  H  V  M  V  S  S  I  A  I  *  L  T  R  E  V  Y  L  F  S :   L  R  I  M  K  R  L  D  *  R  W  L  K  L  *  L  V  V  F  Q  H  L  Q  L  V  M  V  D  L  W  R  S  F  R  T  V  Y  P  G  T  I  *  I  L  I  I  P  I  K  L  L  S  S  W  *  N  S  S  N  D  A  N  K  I  L  L  T  G  K  I  Y  L  H  L  A  Y  K  G  F  S  T   : G  I  H  G  K  F  T  R  R  G  *  *  L  W  L  V  Y  M  V  S  G  S  L  F  Q  N  S  R  G  V  K  L  D  D  T  S  R  C  S  T  F  S  S  S  V  S  W :   *  N  L  F  L  *  Q  L  M  R  S  S  E  D  F  A  K  E  *  I  T  W  S  I  P  L  Y  L  *  *  F  F  F  C  S  S  C  L  L  C  S  *  T  N  *  V  H  *  V  S  N  R  S  Q  I  A  K  R  Y  Y </second_frame>
            <third_frame>   *  L  E  N  V  E  S  K  V  V  K  N  T  *  Y  E  R  E  S  *  G  Y  S  L  C  S  P  *  S  A  S  G  S  P  I  Q  :  I  C  G  A  G  E  G  D  I  A  A  S  S  F  N  *  *  A  E  *  C  C  M  *  *  H  C  L  *  K  A  E  R  R  P  L  L  *  N  L  E  I  Y  S   : G  S  H  C  A  P  T  I  C  C  Y  S  S  S  S  K  A  R  C  L  G  I  C  S  C  E  R  I  *  S  E  R  *  T  I  D  G  S  *  I  S  P  F  Q  R  R  T  C  R  W  R  :  G  S  *  S  S  F  C  A  *  A  G  F  *  A  I  *  C  I  S  S  S  S  L  T  L  F  I  H  W  K  W  S  T  I  P  Q  S  S  F  V  L  K  Y  V  S  Q  Q  R  I  P  R  P  I  T  *  F  P  *  R  T  Q  S  *  R  E   : C  L  D  V  E  *  T  Y  T  A  N  L  Q  A  G  V  V  S  *  *  G  R  *  L  S  L  K  A  T  T  R  Y  T  L  Y  *  L  *  I  C  :  I  A  G  N  G  L  *  E  R  L  G  *  Y  C  K  S  C  F  G  D  Y  A  S  A  F  *  H  S  S  G  S  *  S  L  N  L  R  D  F  S  W  *  I  T  N  G  V  *  C  C  H  I  I  S  S  W  I  L  W  S  S  K  C  L  G  F  A  G  H  W  W  T   : G  C  L  Y  T  G  S  S  A  C  F  G  G  R  N  A  S  *  N  K  A  T  R  T  Q  L  Q  A  *  N  P  C   : C  H  P  T  D  T  *  C  *  R  N  H  V  Q  P  A  V  G  E  N  *  W  N  *  I  L  A  Y  F  T  C  P  F  *  D  R  K  W  N  P  S  *  M  D  I  *  V  *  C  M  A  L  P  G  E  V  Y  *   : G  R  G  R  *  N  V  C  *  A  P  G  S  A  *  S  D  Y  W  Q  L  Q  *  W  K  F  S  C  L  P  V  S  I  *  N  G  H  H  T   : V  Y  H  C  S  C  F  G  E  N  K  V  S  *  F  *  H  L  L  E  K  V  *  G  E  I  S  F  F  M  S  V  Y  C  *  P  T  V  N  E  S  F  R  F  H  N  H  *  Y  L  S  R  D  C  R  N  :  E  E  Y  C  W  S  V  R  E  S  Y  C  F  H  S  P  R  P  I  S  C  C  P  W  H  *  C  L  R  S  Q  I  Q  Y  S  V  S  W  S  *  H  D  N  L  L  P  I  F  *  Q  G  K  E  T  D  I  F  A  S  L  D  *  E  V  V  I  *  S  *  A  E  *  S  A  Y  :  R  Q  P  E  *  S  I  K  T  D  N  F  F  N  G  K  A  *  P  G  K  E  H  Y  R  I  S  *  V  L  C  *  K  C  H  T  Q  G  T  G  *  P  C  C  S  S  W  I  Q  R  C  K  E  I  Q  *  *  R  R  N  S  R  N  *  E  D  A  C  S  Y  E  G  T  *  L  G  W  S  I  Q  M  D  I  S  P  N  E  P  G  T  *  W  *  A  L  S  L  Y  S  *  Q  E  R  Y  I  C  S   : A  C  V  L  *  S  V  W  T  D  G  G  *  S  Y  D  L  W  S  S  N  I  C  N  L  S  W  W  T  Y  G  D  H  S  G  R  C  I  R  V  P  Y  R  S  L  S  S  Q  *  S  C  *  A  H  G  R  I  L  P  T  M  R  T  K  S  Y  S  L  G  K  Y  I  C  I  W  P  T  K  D  S  R  Q  :  V  Y  M  E  N  L  L  G  E  A  D  D  F  G  W  C  I  W  F  L  E  A  C  F  K  T  R  E  A  *  N  *  T  I  P  R  D  V  L  H  S  Q  V  P  *  V   : G  K  I  C  S  S  S  S  *  *  E  A  V  R  I  L  Q  R  N  K  *  R  G  A  Y  H  S  I  Y  D  N  F  F  F  V  L  L  V  C  C  V  V  K  L  I  K  C  T  E  F  L  I  D  L  K  *  L  N  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15635" stop="15526"/>
                    <exon start="15444" stop="15312"/>
                    <exon start="15241" stop="15090"/>
                    <exon start="15022" stop="14827"/>
                    <exon start="14649" stop="14531"/>
                    <exon start="14433" stop="14217"/>
                    <exon start="13734" stop="13639"/>
                    <exon start="13555" stop="13382"/>
                    <exon start="13070" stop="12954"/>
                    <exon start="12855" stop="12689"/>
                    <exon start="11932" stop="11708"/>
                    <exon start="11427" stop="11106"/>
                    <exon start="11008" stop="10764"/>
                    <exon start="10697" stop="10559"/>
                    <exon start="10468" stop="10430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2448</number_coding_nucleotides>
                  <number_encoded_amino_acids>816</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNWKMSNPKLSRIPSMRERVEDTLSAHRNQLVALLSRYVAQGKGILQPHHLIDELNNAVCDDTACEKLKEGPFCEILKSTQEAIVLPPFVAIAVRPRPGVWEYVRVNVYDLSVEQLTVPEYLRFKEELVDGEDHNHLFVLELDFEPFNASVPRPSRSSSIGNGVQFLNRHLSSNMFRSNESLDPLLDFLRGHNHKGNVLMLNERIQRISRLESSLNKADDYLSKLPPDTPYTDFEYALQEMGFEKGWGDTANRVLETMHLLSDILQAPDPSTLETFLGRLPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALEAEMLLRIKQQGLNFKPRILVVTRLIPDAKGTTCNQRLERISGTEYSHILRVPFRTENGILHKWISRFDVWPYLEKFTEDVAGEMSAELQGVPDLIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFEEKYHFSCQFTADLLSMNHSDFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMTIYFPYFDKEKRLTSLHPSIEKLLFDPEQNEVHIGSLNDQSKPIIFSMARLDRVKNITGLVECYAKNATLRELANLVVVAGYNDVKKSNDREEIAEIEKMHALMKEHNLDGQFRWISAQMNRARNGELYRYIADKRGIFVQPAYYEAFGLTVVEAMTCGLPTFATCHGGPMEIIQDGVSGYHIDPYHPNKAAELMVEFFQRCEQNPTHWENISASGLQRILDRYTWKIYSERLMTLAGVYGFWKLVSKLERRETRRYLEMFYILKFRELVKSVPLAVDEKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="23374" PGL_stop="17978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23374" e_stop="23341"/>
            <exon e_start="23248" e_stop="23186"/>
            <exon e_start="22705" e_stop="22649"/>
            <exon e_start="22561" e_stop="22460"/>
            <exon e_start="22127" e_stop="21969"/>
            <exon e_start="21866" e_stop="21735"/>
            <exon e_start="21646" e_stop="21560"/>
            <exon e_start="21439" e_stop="21368"/>
            <exon e_start="20548" e_stop="20462"/>
            <exon e_start="20378" e_stop="19922"/>
            <exon e_start="19235" e_stop="19174"/>
            <exon e_start="18470" e_stop="18402"/>
            <exon e_start="18319" e_stop="17978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.324" acc_prob="0.856" e_score="0.882"/>
          <exon-intron don_prob="0.996" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="1.000" e_score="0.951"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.969"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="0.962"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.432" e_score="0.986"/>
          <exon-intron don_prob="0.923" acc_prob="0.980" e_score="0.931"/>
          <exon-intron don_prob="0.851" acc_prob="0.782" e_score="0.950"/>
          <exon-intron don_prob="0.883" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.755" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.882">
            <gDNA_exon_boundary e_start="23374" e_stop="23341" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.324" acc_prob="0.856">
            <gDNA_intron_boundary i_start="23340" i_stop="23249" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23248" e_stop="23186" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.869">
            <gDNA_intron_boundary i_start="23185" i_stop="22706" i_length="480"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22705" e_stop="22649" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="22648" i_stop="22562" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.951">
            <gDNA_exon_boundary e_start="22561" e_stop="22460" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.758" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22459" i_stop="22128" i_length="332"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="22127" e_stop="21969" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21968" i_stop="21867" i_length="102"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="21866" e_stop="21735" e_length="132"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="21734" i_stop="21647" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21646" e_stop="21560" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21559" i_stop="21440" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="21439" e_stop="21368" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.432">
            <gDNA_intron_boundary i_start="21367" i_stop="20549" i_length="819"/>
          </intron>
          <exon e_serial="9" e_score="0.931">
            <gDNA_exon_boundary e_start="20548" e_stop="20462" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.923" acc_prob="0.980">
            <gDNA_intron_boundary i_start="20461" i_stop="20379" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="0.950">
            <gDNA_exon_boundary e_start="20378" e_stop="19922" e_length="457"/>
          </exon>
          <intron i_serial="10" don_prob="0.851" acc_prob="0.782">
            <gDNA_intron_boundary i_start="19921" i_stop="19236" i_length="686"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="19235" e_stop="19174" e_length="62"/>
          </exon>
          <intron i_serial="11" don_prob="0.883" acc_prob="0.979">
            <gDNA_intron_boundary i_start="19173" i_stop="18471" i_length="703"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="18470" e_stop="18402" e_length="69"/>
          </exon>
          <intron i_serial="12" don_prob="0.976" acc_prob="0.755">
            <gDNA_intron_boundary i_start="18401" i_stop="18320" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="0.997">
            <gDNA_exon_boundary e_start="18319" e_stop="17978" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23374" stop="23341"/>
              <exon start="23248" stop="23186"/>
              <exon start="22705" stop="22649"/>
              <exon start="22561" stop="22460"/>
              <exon start="22127" stop="21969"/>
              <exon start="21866" stop="21735"/>
              <exon start="21646" stop="21575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22496" stop="22460"/>
              <exon start="22127" stop="21969"/>
              <exon start="21866" stop="21735"/>
              <exon start="21646" stop="21560"/>
              <exon start="21439" stop="21368"/>
              <exon start="20548" stop="20462"/>
              <exon start="20378" stop="20042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22127" stop="21969"/>
              <exon start="21866" stop="21735"/>
              <exon start="21646" stop="21560"/>
              <exon start="21439" stop="21368"/>
              <exon start="20548" stop="20462"/>
              <exon start="20378" stop="20148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20140" stop="19922"/>
              <exon start="19235" stop="19174"/>
              <exon start="18470" stop="18402"/>
              <exon start="18319" stop="18106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20026" stop="19922"/>
              <exon start="19235" stop="19174"/>
              <exon start="18470" stop="18402"/>
              <exon start="18319" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370030" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18455" stop="18402"/>
              <exon start="18319" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18406" stop="18402"/>
              <exon start="18319" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18230" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259978" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGTTCAATAAAAGAAGTAAACCAAATTGCACAG : CTTCGAATTATTATAAAACCAAAGCCTTGTGTCGGAGTTAGGCCCCTTTGCAGTGCACAGCAG : ATATGCTATCATCTGCTTGGACTAGTACATGGAATCTGGACACCTATCCCTCGTGCT : ATGAAAGACTACATTGCCACTCCAAAGCCTAACGGCTATCAAAGTCTTCATACAACGGTGATTCCATTTCTTTATGAGAGCATGTTTCGTTTAGAGGTTCAG : ATTAGAACTGAAGAGATGGACCTCATAGCTGAGAGAGGCATTGCTGCACACTACAGTGGGAAAGGTTTTGTAAATGGTTTAGTTGGGCATGTTATAACCAATGATAAAAATTCTGGAGGGAAAATAGTCTGCCTTAACAATGCCAATATTGCTCTCAGG : ATTGGCTGGCTGAATGCAATTAGGGAGTGGCAAGAAGAGTTCGTTGGAAACATGAGTTCTAGGGAATTTGTGGACACTATTACCAGAGATCTGTTGGGCAGTCGTGTCTTTGTGTTTACACCTGGAGGAGAG : ATAAAACATCTCCCAAAGGGGGCTACTGTCATTGATTATGCGTATATGATACACACTGAAATTGGCAATAAAATGGTGGCTGCTAAG : GTGAATGGTAATCTTATCAAGCCAATGCATGTACTTGCAAACGCAGAAGTTGTAGAGATTATCACTTACAAT : GGTCTCTCTAGCAAGTCTGCTTTCGAGAGACACAAACAGTGGCTTCAACATGCGAAAACTCGTTGTGCCCGACACAAAATTATGAAA : TTTTTGAGAGAGCAAGCTGCACTATCAGCATCTGAGATAACTGTGGATTCAGTTAAGGAATTTGCAGCTGAGTCTGAAGGGGATAGCACAGTGGAAAAATTAGCAGATTACTCTGAGGGAACCAAACATTCGTGGGAGAAAATCCTCAAAAATGTTATGGATGTATTATCTGCAAGGATGAGTGGTGAAAATATTTTCCAACTCCGTAGTGGTAGTATTCAAATTCCCAAGGTAAATGGGAAACATAATAAGTGCATGCAGCATACAAATTTGAAGGCCACAGGGGAGACATTGTCACAAGGAAATGGTGTTGGCGAAATGATACTTGCTAACATACCAAGGTACAGGGATGTTCTGCCTGGATTAGACGGCTGGATGGCTAGCAAAGTTGCAACTTGGCAAAACCTGGAAGGGCACTCTGTTCAGTGGTTTTGTGTTGTCAGCATAGATCGAAAAG : GCATGATGGCCGATATTACTTCAGCATTGGCAGCTGTAGGCGTCATCATATGTTCTTGTGCG : GCTGAGACGGATAGAGGGAAGGGAATCGGTGTCGCGCTATTTCATATTGAAGCCAACCTAGAGAGCTTG : GTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAC</gDNA_template>
            <first_frame> E  F  N  K  R  S  K  P  N  C  T   : A  S  N  Y  Y  K  T  K  A  L  C  R  S  *  A  P  L  Q  C  T  A   : D  M  L  S  S  A  W  T  S  T  W  N  L  D  T  Y  P  S  C   : Y  E  R  L  H  C  H  S  K  A  *  R  L  S  K  S  S  Y  N  G  D  S  I  S  L  *  E  H  V  S  F  R  G  S   : D  *  N  *  R  D  G  P  H  S  *  E  R  H  C  C  T  L  Q  W  E  R  F  C  K  W  F  S  W  A  C  Y  N  Q  *  *  K  F  W  R  E  N  S  L  P  *  Q  C  Q  Y  C  S  Q   : D  W  L  A  E  C  N  *  G  V  A  R  R  V  R  W  K  H  E  F  *  G  I  C  G  H  Y  Y  Q  R  S  V  G  Q  S  C  L  C  V  Y  T  W  R  R   : D  K  T  S  P  K  G  G  Y  C  H  *  L  C  V  Y  D  T  H  *  N  W  Q  *  N  G  G  C  *   : G  E  W  *  S  Y  Q  A  N  A  C  T  C  K  R  R  S  C  R  D  Y  H  L  Q   : W  S  L  *  Q  V  C  F  R  E  T  Q  T  V  A  S  T  C  E  N  S  L  C  P  T  Q  N  Y  E   : I  F  E  R  A  S  C  T  I  S  I  *  D  N  C  G  F  S  *  G  I  C  S  *  V  *  R  G  *  H  S  G  K  I  S  R  L  L  *  G  N  Q  T  F  V  G  E  N  P  Q  K  C  Y  G  C  I  I  C  K  D  E  W  *  K  Y  F  P  T  P  *  W  *  Y  S  N  S  Q  G  K  W  E  T  *  *  V  H  A  A  Y  K  F  E  G  H  R  G  D  I  V  T  R  K  W  C  W  R  N  D  T  C  *  H  T  K  V  Q  G  C  S  A  W  I  R  R  L  D  G  *  Q  S  C  N  L  A  K  P  G  R  A  L  C  S  V  V  L  C  C  Q  H  R  S  K  R :   H  D  G  R  Y  Y  F  S  I  G  S  C  R  R  H  H  M  F  L  C   : G  *  D  G  *  R  E  G  N  R  C  R  A  I  S  Y  *  S  Q  P  R  E  L   : G  W  C  K  F  E  D  *  H  D  P  G  C  F  G  M  V  H  G  L  Q  L  V  R  E  Q  T  V  S  R  M  L  I  *  W  P  G  E  E  *  L  P  S  C  *  M  L  G  E  E  S  F  V  Q  *  N  L  S  S  V  *  Q  V  *  K  Q  A  I  *  V  I  W  C  R  A  T  V  Y  K  G  R  V  A  T  S  Y  T  C  K  G  I  F  N  Y  T  N  S  N  K  S  M  L  Q  L  Y  K  I  N  I  L  N  Y  L  S  </first_frame>
            <second_frame>  S  S  I  K  E  V  N  Q  I  A  Q  :  L  R  I  I  I  K  P  K  P  C  V  G  V  R  P  L  C  S  A  Q  Q  :  I  C  Y  H  L  L  G  L  V  H  G  I  W  T  P  I  P  R  A  :  M  K  D  Y  I  A  T  P  K  P  N  G  Y  Q  S  L  H  T  T  V  I  P  F  L  Y  E  S  M  F  R  L  E  V  Q  :  I  R  T  E  E  M  D  L  I  A  E  R  G  I  A  A  H  Y  S  G  K  G  F  V  N  G  L  V  G  H  V  I  T  N  D  K  N  S  G  G  K  I  V  C  L  N  N  A  N  I  A  L  R  :  I  G  W  L  N  A  I  R  E  W  Q  E  E  F  V  G  N  M  S  S  R  E  F  V  D  T  I  T  R  D  L  L  G  S  R  V  F  V  F  T  P  G  G  E  :  I  K  H  L  P  K  G  A  T  V  I  D  Y  A  Y  M  I  H  T  E  I  G  N  K  M  V  A  A  K  :  V  N  G  N  L  I  K  P  M  H  V  L  A  N  A  E  V  V  E  I  I  T  Y  N  :  G  L  S  S  K  S  A  F  E  R  H  K  Q  W  L  Q  H  A  K  T  R  C  A  R  H  K  I  M  K  :  F  L  R  E  Q  A  A  L  S  A  S  E  I  T  V  D  S  V  K  E  F  A  A  E  S  E  G  D  S  T  V  E  K  L  A  D  Y  S  E  G  T  K  H  S  W  E  K  I  L  K  N  V  M  D  V  L  S  A  R  M  S  G  E  N  I  F  Q  L  R  S  G  S  I  Q  I  P  K  V  N  G  K  H  N  K  C  M  Q  H  T  N  L  K  A  T  G  E  T  L  S  Q  G  N  G  V  G  E  M  I  L  A  N  I  P  R  Y  R  D  V  L  P  G  L  D  G  W  M  A  S  K  V  A  T  W  Q  N  L  E  G  H  S  V  Q  W  F  C  V  V  S  I  D  R  K   : G  M  M  A  D  I  T  S  A  L  A  A  V  G  V  I  I  C  S  C  A  :  A  E  T  D  R  G  K  G  I  G  V  A  L  F  H  I  E  A  N  L  E  S  L  :  V  G  A  S  S  R  I  D  M  I  L  G  V  L  G  W  S  T  G  C  S  W  S  E  N  K  Q  F  L  E  C  *  F  S  G  L  V  K  S  S  C  P  A  V  E  C  L  G  K  K  V  L  F  S  E  T  *  V  L  F  D  K  Y  R  S  K  Q  Y  R  L  Y  G  V  G  R  L  Y  I  K  E  E  *  Q  P  V  I  L  V  K  E  F  S  T  I  R  T  P  T  K  V  C  Y  S  Y  T  K  *  I  Y  *  I  I  C  H </second_frame>
            <third_frame>   V  Q  *  K  K  *  T  K  L  H  S :   F  E  L  L  *  N  Q  S  L  V  S  E  L  G  P  F  A  V  H  S  R :   Y  A  I  I  C  L  D  *  Y  M  E  S  G  H  L  S  L  V  L :   *  K  T  T  L  P  L  Q  S  L  T  A  I  K  V  F  I  Q  R  *  F  H  F  F  M  R  A  C  F  V  *  R  F  R :   L  E  L  K  R  W  T  S  *  L  R  E  A  L  L  H  T  T  V  G  K  V  L  *  M  V  *  L  G  M  L  *  P  M  I  K  I  L  E  G  K  *  S  A  L  T  M  P  I  L  L  S  G :   L  A  G  *  M  Q  L  G  S  G  K  K  S  S  L  E  T  *  V  L  G  N  L  W  T  L  L  P  E  I  C  W  A  V  V  S  L  C  L  H  L  E  E  R :   *  N  I  S  Q  R  G  L  L  S  L  I  M  R  I  *  Y  T  L  K  L  A  I  K  W  W  L  L  R :   *  M  V  I  L  S  S  Q  C  M  Y  L  Q  T  Q  K  L  *  R  L  S  L  T  M :   V  S  L  A  S  L  L  S  R  D  T  N  S  G  F  N  M  R  K  L  V  V  P  D  T  K  L  *  N :   F  *  E  S  K  L  H  Y  Q  H  L  R  *  L  W  I  Q  L  R  N  L  Q  L  S  L  K  G  I  A  Q  W  K  N  *  Q  I  T  L  R  E  P  N  I  R  G  R  K  S  S  K  M  L  W  M  Y  Y  L  Q  G  *  V  V  K  I  F  S  N  S  V  V  V  V  F  K  F  P  R  *  M  G  N  I  I  S  A  C  S  I  Q  I  *  R  P  Q  G  R  H  C  H  K  E  M  V  L  A  K  *  Y  L  L  T  Y  Q  G  T  G  M  F  C  L  D  *  T  A  G  W  L  A  K  L  Q  L  G  K  T  W  K  G  T  L  F  S  G  F  V  L  S  A  *  I  E  K  :  A  *  W  P  I  L  L  Q  H  W  Q  L  *  A  S  S  Y  V  L  V  R :   L  R  R  I  E  G  R  E  S  V  S  R  Y  F  I  L  K  P  T  *  R  A  W :   L  V  Q  V  R  G  L  T  *  S  W  V  F  W  D  G  P  R  A  A  V  G  Q  R  T  N  S  F  *  N  A  N  L  V  A  W  *  R  V  V  A  Q  L  L  N  A  W  G  R  K  F  C  S  V  K  P  E  F  C  L  T  S  I  E  A  S  N  I  G  Y  M  V  *  G  D  C  I  *  R  K  S  S  N  Q  L  Y  L  *  R  N  F  Q  L  Y  E  L  Q  Q  K  Y  V  T  V  I  Q  N  K  Y  I  K  L  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23373" stop="23341"/>
                    <exon start="23248" stop="23186"/>
                    <exon start="22705" stop="22649"/>
                    <exon start="22561" stop="22460"/>
                    <exon start="22127" stop="21969"/>
                    <exon start="21866" stop="21735"/>
                    <exon start="21646" stop="21560"/>
                    <exon start="21439" stop="21368"/>
                    <exon start="20548" stop="20462"/>
                    <exon start="20378" stop="19922"/>
                    <exon start="19235" stop="19174"/>
                    <exon start="18470" stop="18402"/>
                    <exon start="18319" stop="18224"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1473</number_coding_nucleotides>
                  <number_encoded_amino_acids>491</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSIKEVNQIAQLRIIIKPKPCVGVRPLCSAQQICYHLLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGKGFVNGLVGHVITNDKNSGGKIVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPGGEIKHLPKGATVIDYAYMIHTEIGNKMVAAKVNGNLIKPMHVLANAEVVEIITYNGLSSKSAFERHKQWLQHAKTRCARHKIMKFLREQAALSASEITVDSVKEFAAESEGDSTVEKLADYSEGTKHSWEKILKNVMDVLSARMSGENIFQLRSGSIQIPKVNGKHNKCMQHTNLKATGETLSQGNGVGEMILANIPRYRDVLPGLDGWMASKVATWQNLEGHSVQWFCVVSIDRKGMMADITSALAAVGVIICSCAAETDRGKGIGVALFHIEANLESLVGASSRIDMILGVLGWSTGCSWSENKQFLEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18320" e_stop="17978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="18320" e_stop="17978" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18320" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259074" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18230" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259978" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAC</gDNA_template>
            <first_frame> G  W  C  K  F  E  D  *  H  D  P  G  C  F  G  M  V  H  G  L  Q  L  V  R  E  Q  T  V  S  R  M  L  I  *  W  P  G  E  E  *  L  P  S  C  *  M  L  G  E  E  S  F  V  Q  *  N  L  S  S  V  *  Q  V  *  K  Q  A  I  *  V  I  W  C  R  A  T  V  Y  K  G  R  V  A  T  S  Y  T  C  K  G  I  F  N  Y  T  N  S  N  K  S  M  L  Q  L  Y  K  I  N  I  L  N  Y  L  S  </first_frame>
            <second_frame>  V  G  A  S  S  R  I  D  M  I  L  G  V  L  G  W  S  T  G  C  S  W  S  E  N  K  Q  F  L  E  C  *  F  S  G  L  V  K  S  S  C  P  A  V  E  C  L  G  K  K  V  L  F  S  E  T  *  V  L  F  D  K  Y  R  S  K  Q  Y  R  L  Y  G  V  G  R  L  Y  I  K  E  E  *  Q  P  V  I  L  V  K  E  F  S  T  I  R  T  P  T  K  V  C  Y  S  Y  T  K  *  I  Y  *  I  I  C  H </second_frame>
            <third_frame>   L  V  Q  V  R  G  L  T  *  S  W  V  F  W  D  G  P  R  A  A  V  G  Q  R  T  N  S  F  *  N  A  N  L  V  A  W  *  R  V  V  A  Q  L  L  N  A  W  G  R  K  F  C  S  V  K  P  E  F  C  L  T  S  I  E  A  S  N  I  G  Y  M  V  *  G  D  C  I  *  R  K  S  S  N  Q  L  Y  L  *  R  N  F  Q  L  Y  E  L  Q  Q  K  Y  V  T  V  I  Q  N  K  Y  I  K  L  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0058A04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18645" e_stop="18473"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="18645" e_stop="18473" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18645" stop="18473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18645" stop="18473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222269" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTATCTATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAATTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAACTGC</gDNA_template>
            <first_frame> F  Y  L  L  H  C  I  L  L  L  R  Y  Y  L  L  S  I  H  S  E  K  C  T  K  I  *  A  I  K  *  S  Y  S  P  P  V  S  I  M  L  E  F  S  I  V  R  *  L  H  C  Y  L  K  K  K  K  T   </first_frame>
            <second_frame>  S  I  Y  Y  I  A  F  F  F  *  D  I  T  F  *  V  F  I  L  K  N  A  Q  R  S  K  Q  L  N  S  H  I  L  L  L  F  Q  L  C  *  N  S  Q  L  *  G  D  C  I  V  T  *  K  K  K  K  L  </second_frame>
            <third_frame>   L  S  I  T  L  H  S  S  F  E  I  L  P  F  E  Y  S  F  *  K  M  H  K  D  L  S  N  *  I  V  I  F  S  S  C  F  N  Y  V  R  I  L  N  C  E  V  T  A  L  L  L  E  K  K  K  N  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0058A04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26427" PGL_stop="25546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26427" e_stop="26396"/>
            <exon e_start="26321" e_stop="26244"/>
            <exon e_start="26163" e_stop="26092"/>
            <exon e_start="25608" e_stop="25546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26427" e_stop="26396" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="26395" i_stop="26322" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26321" e_stop="26244" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="26243" i_stop="26164" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26163" e_stop="26092" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.957">
            <gDNA_intron_boundary i_start="26091" i_stop="25609" i_length="483"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25608" e_stop="25546" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26427" stop="26396"/>
              <exon start="26321" stop="26244"/>
              <exon start="26163" stop="26092"/>
              <exon start="25608" stop="25546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGCAAATGTTTCTTTCCATGACAGAGGAG : GTCCGTGTTATAATTGTCAAATTAGCTGATAGATTACATAACATGCGCACTCTTTCACATATGCCTCCACACAAGCAG : TCTGGAATAGCAACAGAGACGCTGCAGGTTTTTGCTCCTTTGGCAAAACTTCTCGGAATATACCAAATCAAG : TCAGAGCTTGAAAACTTGGCATTTATGTATACAAATGCTCAAGACTATGCCAGGGTGCAGCGC</gDNA_template>
            <first_frame> L  G  K  C  F  F  P  *  Q  R  R :   S  V  L  *  L  S  N  *  L  I  D  Y  I  T  C  A  L  F  H  I  C  L  H  T  S  S :   L  E  *  Q  Q  R  R  C  R  F  L  L  L  W  Q  N  F  S  E  Y  T  K  S  S :   Q  S  L  K  T  W  H  L  C  I  Q  M  L  K  T  M  P  G  C  S   </first_frame>
            <second_frame>  *  A  N  V  S  F  H  D  R  G   : G  P  C  Y  N  C  Q  I  S  *  *  I  T  *  H  A  H  S  F  T  Y  A  S  T  Q  A   : V  W  N  S  N  R  D  A  A  G  F  C  S  F  G  K  T  S  R  N  I  P  N  Q   : V  R  A  *  K  L  G  I  Y  V  Y  K  C  S  R  L  C  Q  G  A  A  </second_frame>
            <third_frame>   R  Q  M  F  L  S  M  T  E  E  :  V  R  V  I  I  V  K  L  A  D  R  L  H  N  M  R  T  L  S  H  M  P  P  H  K  Q  :  S  G  I  A  T  E  T  L  Q  V  F  A  P  L  A  K  L  L  G  I  Y  Q  I  K  :  S  E  L  E  N  L  A  F  M  Y  T  N  A  Q  D  Y  A  R  V  Q  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26425" stop="26396"/>
                    <exon start="26321" stop="26244"/>
                    <exon start="26163" stop="26092"/>
                    <exon start="25608" stop="25546"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQMFLSMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSGIATETLQVFAPLAKLLGIYQIKSELENLAFMYTNAQDYARVQR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30481" PGL_stop="26688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30481" e_stop="30213"/>
            <exon e_start="29520" e_stop="29327"/>
            <exon e_start="27791" e_stop="27627"/>
            <exon e_start="27166" e_stop="27101"/>
            <exon e_start="26923" e_stop="26831"/>
            <exon e_start="26751" e_stop="26688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.929" acc_prob="0.726" e_score="0.829"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.954"/>
          <exon-intron don_prob="0.848" acc_prob="0.698" e_score="0.921"/>
          <exon-intron don_prob="0.833" acc_prob="0.997" e_score="0.970"/>
          <exon-intron don_prob="0.612" acc_prob="0.513" e_score="0.957"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.829">
            <gDNA_exon_boundary e_start="30481" e_stop="30213" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.929" acc_prob="0.726">
            <gDNA_intron_boundary i_start="30212" i_stop="29521" i_length="692"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="29520" e_stop="29327" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="29326" i_stop="27792" i_length="1535"/>
          </intron>
          <exon e_serial="3" e_score="0.921">
            <gDNA_exon_boundary e_start="27791" e_stop="27627" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.848" acc_prob="0.698">
            <gDNA_intron_boundary i_start="27626" i_stop="27167" i_length="460"/>
          </intron>
          <exon e_serial="4" e_score="0.970">
            <gDNA_exon_boundary e_start="27166" e_stop="27101" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.833" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27100" i_stop="26924" i_length="177"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="26923" e_stop="26831" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.612" acc_prob="0.513">
            <gDNA_intron_boundary i_start="26830" i_stop="26752" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="26751" e_stop="26688" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30481" stop="30213"/>
              <exon start="29520" stop="29327"/>
              <exon start="27791" stop="27627"/>
              <exon start="27166" stop="27101"/>
              <exon start="26923" stop="26831"/>
              <exon start="26751" stop="26688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATTTCTCTGAATTCCACAATGTTTGCCTGACTGCAATCGCAGCAAGCAGCTCTGAATGCGAATCATCTTTTGATTACCTTTCACTCGCTGTGATTTTACTCTCCGGCCGAATATGTTTATGTATCTGCTGCATCTTTGTGTTTCCAAACGAGCCAGTTTTTGTTCCGGTTGGCTTGAATTTCCTTAAGTGCCTGCGTTTCAATTCTTCTTCTCTACTGTGTACCGATGCTTTTGAATAGACATGGCTTTTGCTACTTCAATGTCAG : TTTCTATCGAATGTATGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGTGTTATCTTGTGCCTGGAAGGCGCCAAGGGCCTTGACTGGGTTCCTTGCCAGCACAACTCATCCTTCTCAGTGTTCCTCTACTCCTTTTGAGCGATATGGAAGAACAGATCGTCTCCGCCGATGT : AGATGTTATACTTCTGATATGGATGAACGCTACCCTGTTGAAGTTCTGCGAGGAGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAACTGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTCATTTGAAGAGATATCTCCTGAAAGTTTGTGGGAG : GATCTTAAACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTAATAAGGCTTTGAAT : CTTGCTTTTGAGGCACATGATGGTCAAAAGCGTCGTAGTGGAGAGCCCTTCATTATTCACCCAATTGCAGTTGCACAGATCCTTGGACAGCTT : GAATTGGATTGGGAGTCGGTTGCTGCTGGGCTATTACATGATACTGTAGAAGACACAGATGTAG</gDNA_template>
            <first_frame> L  I  S  L  N  S  T  M  F  A  *  L  Q  S  Q  Q  A  A  L  N  A  N  H  L  L  I  T  F  H  S  L  *  F  Y  S  P  A  E  Y  V  Y  V  S  A  A  S  L  C  F  Q  T  S  Q  F  L  F  R  L  A  *  I  S  L  S  A  C  V  S  I  L  L  L  Y  C  V  P  M  L  L  N  R  H  G  F  C  Y  F  N  V  S :   F  Y  R  M  Y  E  Y  M  *  V  L  E  R  R  C  E  W  K  T  R  L  *  C  V  I  L  C  L  E  G  A  K  G  L  D  W  V  P  C  Q  H  N  S  S  F  S  V  F  L  Y  S  F  *  A  I  W  K  N  R  S  S  P  P  M   : *  M  L  Y  F  *  Y  G  *  T  L  P  C  *  S  S  A  R  S  P  W  L  N  A  S  T  I  C  F  *  Q  L  E  I  V  L  L  F  I  I  F  F  R  V  I  *  R  D  I  S  *  K  F  V  G   : G  S  *  T  Y  Y  F  I  S  F  L  Q  G  I  G  I  G  *  *  G  F  E   : S  C  F  *  G  T  *  W  S  K  A  S  *  W  R  A  L  H  Y  S  P  N  C  S  C  T  D  P  W  T  A   : *  I  G  L  G  V  G  C  C  W  A  I  T  *  Y  C  R  R  H  R  C   </first_frame>
            <second_frame>  *  F  L  *  I  P  Q  C  L  P  D  C  N  R  S  K  Q  L  *  M  R  I  I  F  *  L  P  F  T  R  C  D  F  T  L  R  P  N  M  F  M  Y  L  L  H  L  C  V  S  K  R  A  S  F  C  S  G  W  L  E  F  P  *  V  P  A  F  Q  F  F  F  S  T  V  Y  R  C  F  *  I  D  M  A  F  A  T  S  M  S   : V  S  I  E  C  M  N  I  C  K  S  W  K  G  D  V  S  G  R  L  D  C  S  V  L  S  C  A  W  K  A  P  R  A  L  T  G  F  L  A  S  T  T  H  P  S  Q  C  S  S  T  P  F  E  R  Y  G  R  T  D  R  L  R  R  C  :  R  C  Y  T  S  D  M  D  E  R  Y  P  V  E  V  L  R  G  V  P  G  S  M  L  L  L  S  A  S  S  N  W  K  L  C  C  S  S  S  F  S  S  E  S  F  E  E  I  S  P  E  S  L  W  E  :  D  L  K  P  T  I  S  Y  L  S  C  K  E  L  E  L  V  N  K  A  L  N  :  L  A  F  E  A  H  D  G  Q  K  R  R  S  G  E  P  F  I  I  H  P  I  A  V  A  Q  I  L  G  Q  L  :  E  L  D  W  E  S  V  A  A  G  L  L  H  D  T  V  E  D  T  D  V  </second_frame>
            <third_frame>   D  F  S  E  F  H  N  V  C  L  T  A  I  A  A  S  S  S  E  C  E  S  S  F  D  Y  L  S  L  A  V  I  L  L  S  G  R  I  C  L  C  I  C  C  I  F  V  F  P  N  E  P  V  F  V  P  V  G  L  N  F  L  K  C  L  R  F  N  S  S  S  L  L  C  T  D  A  F  E  *  T  W  L  L  L  L  Q  C  Q  :  F  L  S  N  V  *  I  Y  V  S  L  G  K  E  M  *  V  E  D  S  T  V  V  C  Y  L  V  P  G  R  R  Q  G  P  *  L  G  S  L  P  A  Q  L  I  L  L  S  V  P  L  L  L  L  S  D  M  E  E  Q  I  V  S  A  D  V :   D  V  I  L  L  I  W  M  N  A  T  L  L  K  F  C  E  E  S  L  A  Q  C  F  Y  Y  L  L  L  A  T  G  N  C  V  A  L  H  H  F  L  Q  S  H  L  K  R  Y  L  L  K  V  C  G  R :   I  L  N  L  L  F  H  I  F  L  A  R  N  W  N  W  L  I  R  L  *  I :   L  L  L  R  H  M  M  V  K  S  V  V  V  E  S  P  S  L  F  T  Q  L  Q  L  H  R  S  L  D  S  L :   N  W  I  G  S  R  L  L  L  G  Y  Y  M  I  L  *  K  T  Q  M  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30243" stop="30213"/>
                    <exon start="29520" stop="29327"/>
                    <exon start="27791" stop="27627"/>
                    <exon start="27166" stop="27101"/>
                    <exon start="26923" stop="26831"/>
                    <exon start="26751" stop="26689"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDMAFATSMSVSIECMNICKSWKGDVSGRLDCSVLSCAWKAPRALTGFLASTTHPSQCSSTPFERYGRTDRLRRCRCYTSDMDERYPVEVLRGVPGSMLLLSASSNWKLCCSSSFSSESFEEISPESLWEDLKPTISYLSCKELELVNKALNLAFEAHDGQKRRSGEPFIIHPIAVAQILGQLELDWESVAAGLLHDTVEDTDV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30479" stop="30240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFSEFHNVCLTAIAASSSECESSFDYLSLAVILLSGRICLCICCIFVFPNEPVFVPVGLNFLKCLRFNSSSLLCTDAFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30481" e_stop="30213"/>
            <exon e_start="29520" e_stop="29327"/>
            <exon e_start="27791" e_stop="27627"/>
            <exon e_start="27166" e_stop="27101"/>
            <exon e_start="26935" e_stop="26831"/>
            <exon e_start="26751" e_stop="26743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.929" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.698" e_score="1.000"/>
          <exon-intron don_prob="0.833" acc_prob="0.000" e_score="0.985"/>
          <exon-intron don_prob="0.612" acc_prob="0.513" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30481" e_stop="30213" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.929" acc_prob="0.726">
            <gDNA_intron_boundary i_start="30212" i_stop="29521" i_length="692"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29520" e_stop="29327" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="29326" i_stop="27792" i_length="1535"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27791" e_stop="27627" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.848" acc_prob="0.698">
            <gDNA_intron_boundary i_start="27626" i_stop="27167" i_length="460"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="27166" e_stop="27101" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.833" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27100" i_stop="26936" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="26935" e_stop="26831" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.612" acc_prob="0.513">
            <gDNA_intron_boundary i_start="26830" i_stop="26752" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26751" e_stop="26743" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30481" stop="30213"/>
              <exon start="29520" stop="29327"/>
              <exon start="27791" stop="27627"/>
              <exon start="27166" stop="27101"/>
              <exon start="26935" stop="26831"/>
              <exon start="26751" stop="26743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATTTCTCTGAATTCCACAATGTTTGCCTGACTGCAATCGCAGCAAGCAGCTCTGAATGCGAATCATCTTTTGATTACCTTTCACTCGCTGTGATTTTACTCTCCGGCCGAATATGTTTATGTATCTGCTGCATCTTTGTGTTTCCAAACGAGCCAGTTTTTGTTCCGGTTGGCTTGAATTTCCTTAAGTGCCTGCGTTTCAATTCTTCTTCTCTACTGTGTACCGATGCTTTTGAATAGACATGGCTTTTGCTACTTCAATGTCAG : TTTCTATCGAATGTATGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGTGTTATCTTGTGCCTGGAAGGCGCCAAGGGCCTTGACTGGGTTCCTTGCCAGCACAACTCATCCTTCTCAGTGTTCCTCTACTCCTTTTGAGCGATATGGAAGAACAGATCGTCTCCGCCGATGT : AGATGTTATACTTCTGATATGGATGAACGCTACCCTGTTGAAGTTCTGCGAGGAGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAACTGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTCATTTGAAGAGATATCTCCTGAAAGTTTGTGGGAG : GATCTTAAACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTAATAAGGCTTTGAAT : TCATTATTACAGCTTGCTTTTGAGGCACATGATGGTCAAAAGCGTCGTAGTGGAGAGCCCTTCATTATTCACCCAATTGCAGTTGCACAGATCCTTGGACAGCTT : GAATTGGAT</gDNA_template>
            <first_frame> L  I  S  L  N  S  T  M  F  A  *  L  Q  S  Q  Q  A  A  L  N  A  N  H  L  L  I  T  F  H  S  L  *  F  Y  S  P  A  E  Y  V  Y  V  S  A  A  S  L  C  F  Q  T  S  Q  F  L  F  R  L  A  *  I  S  L  S  A  C  V  S  I  L  L  L  Y  C  V  P  M  L  L  N  R  H  G  F  C  Y  F  N  V  S :   F  Y  R  M  Y  E  Y  M  *  V  L  E  R  R  C  E  W  K  T  R  L  *  C  V  I  L  C  L  E  G  A  K  G  L  D  W  V  P  C  Q  H  N  S  S  F  S  V  F  L  Y  S  F  *  A  I  W  K  N  R  S  S  P  P  M   : *  M  L  Y  F  *  Y  G  *  T  L  P  C  *  S  S  A  R  S  P  W  L  N  A  S  T  I  C  F  *  Q  L  E  I  V  L  L  F  I  I  F  F  R  V  I  *  R  D  I  S  *  K  F  V  G   : G  S  *  T  Y  Y  F  I  S  F  L  Q  G  I  G  I  G  *  *  G  F  E   : F  I  I  T  A  C  F  *  G  T  *  W  S  K  A  S  *  W  R  A  L  H  Y  S  P  N  C  S  C  T  D  P  W  T  A   : *  I  G  </first_frame>
            <second_frame>  *  F  L  *  I  P  Q  C  L  P  D  C  N  R  S  K  Q  L  *  M  R  I  I  F  *  L  P  F  T  R  C  D  F  T  L  R  P  N  M  F  M  Y  L  L  H  L  C  V  S  K  R  A  S  F  C  S  G  W  L  E  F  P  *  V  P  A  F  Q  F  F  F  S  T  V  Y  R  C  F  *  I  D  M  A  F  A  T  S  M  S   : V  S  I  E  C  M  N  I  C  K  S  W  K  G  D  V  S  G  R  L  D  C  S  V  L  S  C  A  W  K  A  P  R  A  L  T  G  F  L  A  S  T  T  H  P  S  Q  C  S  S  T  P  F  E  R  Y  G  R  T  D  R  L  R  R  C  :  R  C  Y  T  S  D  M  D  E  R  Y  P  V  E  V  L  R  G  V  P  G  S  M  L  L  L  S  A  S  S  N  W  K  L  C  C  S  S  S  F  S  S  E  S  F  E  E  I  S  P  E  S  L  W  E  :  D  L  K  P  T  I  S  Y  L  S  C  K  E  L  E  L  V  N  K  A  L  N  :  S  L  L  Q  L  A  F  E  A  H  D  G  Q  K  R  R  S  G  E  P  F  I  I  H  P  I  A  V  A  Q  I  L  G  Q  L  :  E  L  D </second_frame>
            <third_frame>   D  F  S  E  F  H  N  V  C  L  T  A  I  A  A  S  S  S  E  C  E  S  S  F  D  Y  L  S  L  A  V  I  L  L  S  G  R  I  C  L  C  I  C  C  I  F  V  F  P  N  E  P  V  F  V  P  V  G  L  N  F  L  K  C  L  R  F  N  S  S  S  L  L  C  T  D  A  F  E  *  T  W  L  L  L  L  Q  C  Q  :  F  L  S  N  V  *  I  Y  V  S  L  G  K  E  M  *  V  E  D  S  T  V  V  C  Y  L  V  P  G  R  R  Q  G  P  *  L  G  S  L  P  A  Q  L  I  L  L  S  V  P  L  L  L  L  S  D  M  E  E  Q  I  V  S  A  D  V :   D  V  I  L  L  I  W  M  N  A  T  L  L  K  F  C  E  E  S  L  A  Q  C  F  Y  Y  L  L  L  A  T  G  N  C  V  A  L  H  H  F  L  Q  S  H  L  K  R  Y  L  L  K  V  C  G  R :   I  L  N  L  L  F  H  I  F  L  A  R  N  W  N  W  L  I  R  L  *  I :   H  Y  Y  S  L  L  L  R  H  M  M  V  K  S  V  V  V  E  S  P  S  L  F  T  Q  L  Q  L  H  R  S  L  D  S  L :   N  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30243" stop="30213"/>
                    <exon start="29520" stop="29327"/>
                    <exon start="27791" stop="27627"/>
                    <exon start="27166" stop="27101"/>
                    <exon start="26935" stop="26831"/>
                    <exon start="26751" stop="26743"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDMAFATSMSVSIECMNICKSWKGDVSGRLDCSVLSCAWKAPRALTGFLASTTHPSQCSSTPFERYGRTDRLRRCRCYTSDMDERYPVEVLRGVPGSMLLLSASSNWKLCCSSSFSSESFEEISPESLWEDLKPTISYLSCKELELVNKALNSLLQLAFEAHDGQKRRSGEPFIIHPIAVAQILGQLELD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30479" stop="30240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFSEFHNVCLTAIAASSSECESSFDYLSLAVILLSGRICLCICCIFVFPNEPVFVPVGLNFLKCLRFNSSSLLCTDAFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="41890" PGL_stop="40657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41890" e_stop="41293"/>
            <exon e_start="40841" e_stop="40657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41890" e_stop="41293" e_length="598"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41292" i_stop="40842" i_length="451"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="40841" e_stop="40657" e_length="185"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41890" stop="41293"/>
              <exon start="40841" stop="40657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41889" stop="41413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327402" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACCATCATGGCAGACGATTTCGGTTCTCATGCTTCTTCTGAGTTCTCCAACACCAGAGTCTCTGAAAATTCTAAGAAGCTTAATGTGTGTGCCTCTGAAACTCAAGAATCCAATACCCATGATGAATCCATCAAGAAAAATGATGAAGAGAAGAAAGATGATGGGTCTGTGAGGTGTTCACTCAAGATTGAAGTAATTGATGATACAGCAATGATTGATATTTCTCAAGTTGGAAAAAGTTGCTCAATTGATAAAAATTTTGATGGAAAATCTGGAAGAAATAGGAAGAAAAAGAATGCAAATCAAATGGTTACGGTTAAAGCAAAAGATAGGAAAATCGAAGAAAAGAATGTGAATGGCGGCTGTAAAATAAATGGAGGAGAAGAGAAGAGGGTTTACTGTAGAAAGGAGTTGGAAAATTTGAGGTTTGTTGGAATGGAACAACAGAGGAAAATGTGGGTTGAGCTGTACTGTGGGCTTGGTGATACCGTGCAAAAGGAGTATGATGGCCTCGTTGACTCTAATACGCAAAAGCACATCCGCCTGTCTCGAAGTCGCAGGCACATTGGTAAAGAAAATACCCCCGTCATTTCTG : GTGTTTTGGCAGCAAAAGAACGAGGAAAACATATGAAAGTTTATACACAAAGAGGCATGACATATATGAATCTGCAGAACACTTTATGTTTACCTGGCCATTAGGTCTTTAGTATTGTCCCCAGTTCGTGATAAAGGGTTGAAGGAGGAAGCATTTCTAATCATTGTCCAATACCTCTGCTGTAC</gDNA_template>
            <first_frame> I  T  I  M  A  D  D  F  G  S  H  A  S  S  E  F  S  N  T  R  V  S  E  N  S  K  K  L  N  V  C  A  S  E  T  Q  E  S  N  T  H  D  E  S  I  K  K  N  D  E  E  K  K  D  D  G  S  V  R  C  S  L  K  I  E  V  I  D  D  T  A  M  I  D  I  S  Q  V  G  K  S  C  S  I  D  K  N  F  D  G  K  S  G  R  N  R  K  K  K  N  A  N  Q  M  V  T  V  K  A  K  D  R  K  I  E  E  K  N  V  N  G  G  C  K  I  N  G  G  E  E  K  R  V  Y  C  R  K  E  L  E  N  L  R  F  V  G  M  E  Q  Q  R  K  M  W  V  E  L  Y  C  G  L  G  D  T  V  Q  K  E  Y  D  G  L  V  D  S  N  T  Q  K  H  I  R  L  S  R  S  R  R  H  I  G  K  E  N  T  P  V  I  S   : G  V  L  A  A  K  E  R  G  K  H  M  K  V  Y  T  Q  R  G  M  T  Y  M  N  L  Q  N  T  L  C  L  P  G  H  *  V  F  S  I  V  P  S  S  *  *  R  V  E  G  G  S  I  S  N  H  C  P  I  P  L  L  Y </first_frame>
            <second_frame>  L  P  S  W  Q  T  I  S  V  L  M  L  L  L  S  S  P  T  P  E  S  L  K  I  L  R  S  L  M  C  V  P  L  K  L  K  N  P  I  P  M  M  N  P  S  R  K  M  M  K  R  R  K  M  M  G  L  *  G  V  H  S  R  L  K  *  L  M  I  Q  Q  *  L  I  F  L  K  L  E  K  V  A  Q  L  I  K  I  L  M  E  N  L  E  E  I  G  R  K  R  M  Q  I  K  W  L  R  L  K  Q  K  I  G  K  S  K  K  R  M  *  M  A  A  V  K  *  M  E  E  K  R  R  G  F  T  V  E  R  S  W  K  I  *  G  L  L  E  W  N  N  R  G  K  C  G  L  S  C  T  V  G  L  V  I  P  C  K  R  S  M  M  A  S  L  T  L  I  R  K  S  T  S  A  C  L  E  V  A  G  T  L  V  K  K  I  P  P  S  F  L  :  V  F  W  Q  Q  K  N  E  E  N  I  *  K  F  I  H  K  E  A  *  H  I  *  I  C  R  T  L  Y  V  Y  L  A  I  R  S  L  V  L  S  P  V  R  D  K  G  L  K  E  E  A  F  L  I  I  V  Q  Y  L  C  C   </second_frame>
            <third_frame>   Y  H  H  G  R  R  F  R  F  S  C  F  F  *  V  L  Q  H  Q  S  L  *  K  F  *  E  A  *  C  V  C  L  *  N  S  R  I  Q  Y  P  *  *  I  H  Q  E  K  *  *  R  E  E  R  *  W  V  C  E  V  F  T  Q  D  *  S  N  *  *  Y  S  N  D  *  Y  F  S  S  W  K  K  L  L  N  *  *  K  F  *  W  K  I  W  K  K  *  E  E  K  E  C  K  S  N  G  Y  G  *  S  K  R  *  E  N  R  R  K  E  C  E  W  R  L  *  N  K  W  R  R  R  E  E  G  L  L  *  K  G  V  G  K  F  E  V  C  W  N  G  T  T  E  E  N  V  G  *  A  V  L  W  A  W  *  Y  R  A  K  G  V  *  W  P  R  *  L  *  Y  A  K  A  H  P  P  V  S  K  S  Q  A  H  W  *  R  K  Y  P  R  H  F  W :   C  F  G  S  K  R  T  R  K  T  Y  E  S  L  Y  T  K  R  H  D  I  Y  E  S  A  E  H  F  M  F  T  W  P  L  G  L  *  Y  C  P  Q  F  V  I  K  G  *  R  R  K  H  F  *  S  L  S  N  T  S  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41890" stop="41293"/>
                    <exon start="40841" stop="40738"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITIMADDFGSHASSEFSNTRVSENSKKLNVCASETQESNTHDESIKKNDEEKKDDGSVRCSLKIEVIDDTAMIDISQVGKSCSIDKNFDGKSGRNRKKKNANQMVTVKAKDRKIEEKNVNGGCKINGGEEKRVYCRKELENLRFVGMEQQRKMWVELYCGLGDTVQKEYDGLVDSNTQKHIRLSRSRRHIGKENTPVISGVLAAKERGKHMKVYTQRGMTYMNLQNTLCLPGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="54289" PGL_stop="42382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54289" e_stop="54161"/>
            <exon e_start="52967" e_stop="52868"/>
            <exon e_start="52441" e_stop="52389"/>
            <exon e_start="52290" e_stop="52209"/>
            <exon e_start="49904" e_stop="49839"/>
            <exon e_start="49721" e_stop="49654"/>
            <exon e_start="46846" e_stop="46640"/>
            <exon e_start="46562" e_stop="46079"/>
            <exon e_start="44023" e_stop="43772"/>
            <exon e_start="43564" e_stop="43212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.086" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.617" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.915" e_score="0.994"/>
          <exon-intron don_prob="0.780" acc_prob="0.668" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="54289" e_stop="54161" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.086">
            <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52967" e_stop="52868" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="52389" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.797">
            <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52290" e_stop="52209" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49904" e_stop="49839" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.617" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49721" e_stop="49654" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46846" e_stop="46640" e_length="207"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="46562" e_stop="46079" e_length="484"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.915">
            <gDNA_intron_boundary i_start="46078" i_stop="44024" i_length="2055"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44023" e_stop="43772" e_length="252"/>
          </exon>
          <intron i_serial="9" don_prob="0.780" acc_prob="0.668">
            <gDNA_intron_boundary i_start="43771" i_stop="43565" i_length="207"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="43564" e_stop="43212" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54289" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279213" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54287" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54277" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54259" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54225" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54223" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54223" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49901" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49901" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49875" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46769" stop="46640"/>
              <exon start="46562" stop="46245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46361" stop="46079"/>
              <exon start="44023" stop="43772"/>
              <exon start="43564" stop="43397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46361" stop="46079"/>
              <exon start="44023" stop="43772"/>
              <exon start="43564" stop="43496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44005" stop="43772"/>
              <exon start="43564" stop="43212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACTCAAAAGTGTTTTTCGTTTTACCGGTTTTCGGTAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT : ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG : GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA : GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT : ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG : GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG : GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG : GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAG : ATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG : GGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAA</gDNA_template>
            <first_frame> E  T  Q  K  C  F  S  F  Y  R  F  S  V  K  N  R  F  H  P  C  L  K  S  I  H  F  R  V  L  A  Q  N  S  D  *  S  E  *  R  R  N  Q  A  :  M  E  Q  L  L  S  P  L  V  F  N  G  S  T  V  E  A  I  T  E  A  K  Q  K  K  K  L  F  V  V  L  V  S   : G  G  N  M  E  S  N  Q  S  E  T  S  T  W  L  D  P  R  :  V  A  D  S  I  S  K  Y  C  I  L  L  H  I  L  E  G  S  T  D  A  R  N  F  S  A  L   : Y  P  Q  E  A  I  P  C  I  T  V  I  G  Y  N  G  V  Q  L  W  Q  H   : G  G  F  V  S  A  E  N  L  A  S  S  L  E  K  A  W  L  S  L  H  V  Q  :  D  T  T  T  T  L  L  T  A  A  L  A  S  R  K  D  L  V  S  G  A  S  S  V  T  A  E  V  G  S  S  S  S  A  Q  V  S  P  A  Q  A  I  T  H  I  Q  S  P  L  A  T  L  S  K  N  S  Q  I  V  E  G  E  D  P  G  H  A  A  M  :  D  I  D  S  S  L  I  D  M  D  S  H  G  S  A  D  A  F  E  S  R  I  G  D  F  N  E  S  T  T  V  I  T  T  A  E  K  P  L  D  L  V  E  V  D  S  N  K  G  K  D  E  C  S  M  S  K  E  N  P  G  L  R  D  Q  H  L  D  P  S  D  E  A  P  R  E  I  A  N  K  A  G  K  D  P  E  I  N  I  V  E  D  A  A  A  E  S  D  D  S  S  N  I  F  H  D  V  C  L  N  I  R  L  P  D  G  S  S  L  Q  V  K  F  L  V  V  D  T  L  R  M  V  K  H  Y  V  D  K  N  Q  T  S  S  I  G  Y  Y  D  L  A  V  P  Y  P  R  K  V  F  G  D  E   : D  L  D  R  T  L  S  D  L  G  L  H  N  R  Q  A  L  I  I  V  L  R  N  K  V  D  V  T  S  L  H  G  L  N  N  P  A  E  S  N  H  T  T  I  G  G  D  A  G  Y  F  A  T  I  R  K  L  F  S  Y  V  N  P  L  S  Y  L  G  G  S  S  N  T  S  N  T  A  R  D  S  I  W  Q  Y   : G  V  G  Y  M  K  H  C  W  L  F  F  S  I  L  N  S  S  K  D  K  L  M  Q  S  E  L  K  A  L  E  V  L  F  I  F  S  S  V  I  *  R  H  L  F  P  D  L  V  P  D  F  G  L  S  V  *  L  L  L  H  V  L  I  S  Y  F  T  L  A  F  T  D  *  I  K  Q  *  V  C  N  *  A  F  Q  D  P  L  S  G  V  W  N  *  V  L  L  K  M  F  Y  L  *  M  D  E  I  R  A  *  L  I  D  S  E  V  Q  K </first_frame>
            <second_frame>  K  L  K  S  V  F  R  F  T  G  F  R  *  K  T  V  S  T  L  V  *  K  A  F  I  L  E  F  W  L  K  I  P  I  D  R  S  E  G  A  I  K  L :   W  S  N  F  Y  L  L  S  C  S  M  V  L  L  *  K  P  S  L  K  P  S  R  R  R  S  F  L  *  F  L  F  Q  :  V  A  I  W  N  Q  I  N  R  K  H  Q  L  G  L  T  Q  E :   L  L  I  L  Y  L  S  T  A  F  C  C  T  S  *  K  E  V  L  M  P  E  T  S  Q  H  C  :  I  H  R  R  L  S  L  V  L  Q  L  L  D  T  M  V  F  N  Y  G  N  T  :  G  V  L  F  L  L  K  I  L  H  L  V  L  R  R  R  G  *  V  F  M  F  R :   I  Q  Q  L  L  C  *  L  L  H  L  L  Q  G  K  I  L  Y  L  E  L  L  L  *  Q  L  K  *  G  V  L  Q  V  L  K  F  H  Q  L  R  R  L  H  I  F  N  L  H  W  L  H  C  L  K  T  L  R  *  *  R  E  R  I  L  D  M  L  L  W :   T  *  I  P  R  *  L  T  W  I  L  M  D  Q  Q  M  P  L  N  L  E  L  V  T  S  M  S  L  P  L  *  S  Q  Q  Q  K  N  H  L  I  L  *  K  *  I  Q  T  R  V  K  M  N  V  Q  C  Q  K  R  I  L  V  C  V  I  N  I  W  T  L  V  M  K  L  L  E  R  L  Q  I  K  Q  G  K  T  P  R  *  I  *  L  K  M  Q  L  L  S  Q  M  I  R  Q  I  Y  F  M  M  F  V  *  T  L  D  C  L  M  V  Q  V  Y  K  *  S  F  S  L  *  I  L  *  G  W  S  S  T  M  L  I  K  T  K  Q  A  A  L  V  I  M  I  *  Q  F  L  I  L  A  R  F  L  V  M  K  :  I  *  I  E  H  C  Q  I  W  V  Y  T  I  G  K  H  *  *  S  F  F  V  T  K  W  M  L  H  H  C  M  V  *  T  I  R  L  R  V  T  I  Q  Q  L  E  A  M  Q  D  I  L  L  R  S  E  N  S  F  R  M  *  I  L  Y  L  T  L  V  E  V  L  T  H  Q  T  L  L  E  I  A  Y  G  N  M  :  G  L  A  I  *  S  I  A  G  Y  F  S  P  F  *  I  H  L  R  T  N  L  C  K  V  N  *  K  H  *  K  F  F  S  F  S  L  A  L  F  E  D  T  F  S  L  I  *  C  L  T  L  D  C  Q  C  N  C  F  S  M  C  *  Y  R  T  S  H  *  L  L  Q  I  K  *  S  N  E  F  V  T  E  L  F  K  I  H  Y  Q  V  Y  G  T  E  C  C  *  K  C  S  I  Y  K  W  M  R  *  G  H  N  S  L  T  V  R  F  R   </second_frame>
            <third_frame>   N  S  K  V  F  F  V  L  P  V  F  G  K  K  P  F  P  P  L  F  E  K  H  S  F  *  S  F  G  S  K  F  R  L  I  G  V  K  A  Q  S  S   : Y  G  A  T  F  I  S  S  R  V  Q  W  F  Y  C  R  S  H  H  *  S  Q  A  E  E  E  A  F  C  S  S  C  F  R :   W  Q  Y  G  I  K  S  I  G  N  I  N  L  A  *  P  K   : S  C  *  F  Y  I  *  V  L  H  F  V  A  H  P  R  R  K  Y  *  C  Q  K  L  L  S  I  V :   S  T  G  G  Y  P  L  Y  Y  S  Y  W  I  Q  W  C  S  T  M  A  T  R :   G  F  C  F  C  *  K  S  C  I  *  S  *  E  G  V  V  K  S  S  C  S   : G  Y  N  N  Y  F  V  D  C  C  T  C  F  K  E  R  S  C  I  W  S  F  F  C  N  S  *  S  R  E  F  F  K  C  S  S  F  T  S  S  G  D  Y  T  Y  S  I  S  I  G  Y  T  V  *  K  L  S  D  S  R  G  R  G  S  W  T  C  C  Y   : G  H  R  F  L  A  D  *  H  G  F  S  W  I  S  R  C  L  *  I  *  N  W  *  L  Q  *  V  Y  H  C  D  H  N  S  R  K  T  T  *  S  C  R  S  R  F  K  Q  G  *  R  *  M  F  N  V  K  R  E  S  W  F  A  *  S  T  F  G  P  *  *  *  S  S  *  R  D  C  K  *  S  R  E  R  P  R  D  K  Y  S  *  R  C  S  C  *  V  R  *  F  V  K  Y  I  S  *  C  L  F  K  H  *  I  A  *  W  F  K  F  T  S  E  V  S  R  C  R  Y  F  K  D  G  Q  A  L  C  *  *  K  P  N  K  Q  H  W  L  L  *  S  S  S  S  L  S  S  Q  G  F  W  *  *  R :   S  R  *  N  I  V  R  F  G  F  T  Q  *  A  S  T  D  N  R  S  S  *  Q  S  G  C  Y  I  I  A  W  S  K  Q  S  G  *  E  *  P  Y  N  N  W  R  R  C  R  I  F  C  Y  D  Q  K  T  L  F  V  C  K  S  F  I  L  P  W  W  K  F  *  H  I  K  H  C  S  R  *  H  M  A  I  W :   G  W  L  Y  E  A  L  L  A  I  F  L  H  F  E  F  I  *  G  Q  T  Y  A  K  *  I  E  S  T  R  S  S  F  H  F  L  *  R  Y  L  K  T  P  F  P  *  F  S  A  *  L  W  T  V  S  V  I  A  S  P  C  A  N  I  V  L  H  T  S  F  Y  R  L  N  K  A  M  S  L  *  L  S  F  S  R  S  I  I  R  C  M  E  L  S  V  V  K  N  V  L  F  I  N  G  *  D  K  G  I  T  H  *  Q  *  G  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54175" stop="54161"/>
                    <exon start="52967" stop="52868"/>
                    <exon start="52441" stop="52389"/>
                    <exon start="52290" stop="52209"/>
                    <exon start="49904" stop="49839"/>
                    <exon start="49721" stop="49654"/>
                    <exon start="46846" stop="46640"/>
                    <exon start="46562" stop="46079"/>
                    <exon start="44023" stop="43772"/>
                    <exon start="43564" stop="43443"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNQAMEQLLSPLVFNGSTVEAITEAKQKKKLFVVLVSGGNMESNQSETSTWLDPRVADSISKYCILLHILEGSTDARNFSALYPQEAIPCITVIGYNGVQLWQHGGFVSAENLASSLEKAWLSLHVQDTTTTLLTAALASRKDLVSGASSVTAEVGSSSSAQVSPAQAITHIQSPLATLSKNSQIVEGEDPGHAAMDIDSSLIDMDSHGSADAFESRIGDFNESTTVITTAEKPLDLVEVDSNKGKDECSMSKENPGLRDQHLDPSDEAPREIANKAGKDPEINIVEDAAAESDDSSNIFHDVCLNIRLPDGSSLQVKFLVVDTLRMVKHYVDKNQTSSIGYYDLAVPYPRKVFGDEDLDRTLSDLGLHNRQALIIVLRNKVDVTSLHGLNNPAESNHTTIGGDAGYFATIRKLFSYVNPLSYLGGSSNTSNTARDSIWQYGVGYMKHCWLFFSILNSSKDKLMQSELKALEVLFIFSSVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53139" e_stop="53109"/>
            <exon e_start="52967" e_stop="52868"/>
            <exon e_start="52441" e_stop="52389"/>
            <exon e_start="52290" e_stop="52209"/>
            <exon e_start="49904" e_stop="49839"/>
            <exon e_start="49721" e_stop="49654"/>
            <exon e_start="46846" e_stop="46640"/>
            <exon e_start="46562" e_stop="46079"/>
            <exon e_start="44023" e_stop="43772"/>
            <exon e_start="43564" e_stop="43212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.837" acc_prob="0.086" e_score="0.935"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.617" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.915" e_score="0.994"/>
          <exon-intron don_prob="0.780" acc_prob="0.668" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="53139" e_stop="53109" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.837" acc_prob="0.086">
            <gDNA_intron_boundary i_start="53108" i_stop="52968" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52967" e_stop="52868" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="52389" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.797">
            <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52290" e_stop="52209" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49904" e_stop="49839" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.617" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49721" e_stop="49654" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46846" e_stop="46640" e_length="207"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="0.994">
            <gDNA_exon_boundary e_start="46562" e_stop="46079" e_length="484"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.915">
            <gDNA_intron_boundary i_start="46078" i_stop="44024" i_length="2055"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44023" e_stop="43772" e_length="252"/>
          </exon>
          <intron i_serial="9" don_prob="0.780" acc_prob="0.668">
            <gDNA_intron_boundary i_start="43771" i_stop="43565" i_length="207"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="43564" e_stop="43212" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53139" stop="53109"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49901" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49901" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49875" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46769" stop="46640"/>
              <exon start="46562" stop="46245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46361" stop="46079"/>
              <exon start="44023" stop="43772"/>
              <exon start="43564" stop="43397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46361" stop="46079"/>
              <exon start="44023" stop="43772"/>
              <exon start="43564" stop="43496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44005" stop="43772"/>
              <exon start="43564" stop="43212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTGCGTTTGTTTGAACTATGGATTACTCT : ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG : GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA : GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT : ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG : GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG : GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG : GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAG : ATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG : GGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAA</gDNA_template>
            <first_frame> A  C  V  C  L  N  Y  G  L  L   : Y  G  A  T  F  I  S  S  R  V  Q  W  F  Y  C  R  S  H  H  *  S  Q  A  E  E  E  A  F  C  S  S  C  F  R :   W  Q  Y  G  I  K  S  I  G  N  I  N  L  A  *  P  K   : S  C  *  F  Y  I  *  V  L  H  F  V  A  H  P  R  R  K  Y  *  C  Q  K  L  L  S  I  V :   S  T  G  G  Y  P  L  Y  Y  S  Y  W  I  Q  W  C  S  T  M  A  T  R :   G  F  C  F  C  *  K  S  C  I  *  S  *  E  G  V  V  K  S  S  C  S   : G  Y  N  N  Y  F  V  D  C  C  T  C  F  K  E  R  S  C  I  W  S  F  F  C  N  S  *  S  R  E  F  F  K  C  S  S  F  T  S  S  G  D  Y  T  Y  S  I  S  I  G  Y  T  V  *  K  L  S  D  S  R  G  R  G  S  W  T  C  C  Y   : G  H  R  F  L  A  D  *  H  G  F  S  W  I  S  R  C  L  *  I  *  N  W  *  L  Q  *  V  Y  H  C  D  H  N  S  R  K  T  T  *  S  C  R  S  R  F  K  Q  G  *  R  *  M  F  N  V  K  R  E  S  W  F  A  *  S  T  F  G  P  *  *  *  S  S  *  R  D  C  K  *  S  R  E  R  P  R  D  K  Y  S  *  R  C  S  C  *  V  R  *  F  V  K  Y  I  S  *  C  L  F  K  H  *  I  A  *  W  F  K  F  T  S  E  V  S  R  C  R  Y  F  K  D  G  Q  A  L  C  *  *  K  P  N  K  Q  H  W  L  L  *  S  S  S  S  L  S  S  Q  G  F  W  *  *  R :   S  R  *  N  I  V  R  F  G  F  T  Q  *  A  S  T  D  N  R  S  S  *  Q  S  G  C  Y  I  I  A  W  S  K  Q  S  G  *  E  *  P  Y  N  N  W  R  R  C  R  I  F  C  Y  D  Q  K  T  L  F  V  C  K  S  F  I  L  P  W  W  K  F  *  H  I  K  H  C  S  R  *  H  M  A  I  W :   G  W  L  Y  E  A  L  L  A  I  F  L  H  F  E  F  I  *  G  Q  T  Y  A  K  *  I  E  S  T  R  S  S  F  H  F  L  *  R  Y  L  K  T  P  F  P  *  F  S  A  *  L  W  T  V  S  V  I  A  S  P  C  A  N  I  V  L  H  T  S  F  Y  R  L  N  K  A  M  S  L  *  L  S  F  S  R  S  I  I  R  C  M  E  L  S  V  V  K  N  V  L  F  I  N  G  *  D  K  G  I  T  H  *  Q  *  G  S  E  </first_frame>
            <second_frame>  L  A  F  V  *  T  M  D  Y  S  :  M  E  Q  L  L  S  P  L  V  F  N  G  S  T  V  E  A  I  T  E  A  K  Q  K  K  K  L  F  V  V  L  V  S   : G  G  N  M  E  S  N  Q  S  E  T  S  T  W  L  D  P  R  :  V  A  D  S  I  S  K  Y  C  I  L  L  H  I  L  E  G  S  T  D  A  R  N  F  S  A  L   : Y  P  Q  E  A  I  P  C  I  T  V  I  G  Y  N  G  V  Q  L  W  Q  H   : G  G  F  V  S  A  E  N  L  A  S  S  L  E  K  A  W  L  S  L  H  V  Q  :  D  T  T  T  T  L  L  T  A  A  L  A  S  R  K  D  L  V  S  G  A  S  S  V  T  A  E  V  G  S  S  S  S  A  Q  V  S  P  A  Q  A  I  T  H  I  Q  S  P  L  A  T  L  S  K  N  S  Q  I  V  E  G  E  D  P  G  H  A  A  M  :  D  I  D  S  S  L  I  D  M  D  S  H  G  S  A  D  A  F  E  S  R  I  G  D  F  N  E  S  T  T  V  I  T  T  A  E  K  P  L  D  L  V  E  V  D  S  N  K  G  K  D  E  C  S  M  S  K  E  N  P  G  L  R  D  Q  H  L  D  P  S  D  E  A  P  R  E  I  A  N  K  A  G  K  D  P  E  I  N  I  V  E  D  A  A  A  E  S  D  D  S  S  N  I  F  H  D  V  C  L  N  I  R  L  P  D  G  S  S  L  Q  V  K  F  L  V  V  D  T  L  R  M  V  K  H  Y  V  D  K  N  Q  T  S  S  I  G  Y  Y  D  L  A  V  P  Y  P  R  K  V  F  G  D  E   : D  L  D  R  T  L  S  D  L  G  L  H  N  R  Q  A  L  I  I  V  L  R  N  K  V  D  V  T  S  L  H  G  L  N  N  P  A  E  S  N  H  T  T  I  G  G  D  A  G  Y  F  A  T  I  R  K  L  F  S  Y  V  N  P  L  S  Y  L  G  G  S  S  N  T  S  N  T  A  R  D  S  I  W  Q  Y   : G  V  G  Y  M  K  H  C  W  L  F  F  S  I  L  N  S  S  K  D  K  L  M  Q  S  E  L  K  A  L  E  V  L  F  I  F  S  S  V  I  *  R  H  L  F  P  D  L  V  P  D  F  G  L  S  V  *  L  L  L  H  V  L  I  S  Y  F  T  L  A  F  T  D  *  I  K  Q  *  V  C  N  *  A  F  Q  D  P  L  S  G  V  W  N  *  V  L  L  K  M  F  Y  L  *  M  D  E  I  R  A  *  L  I  D  S  E  V  Q  K </second_frame>
            <third_frame>   L  R  L  F  E  L  W  I  T  L :   W  S  N  F  Y  L  L  S  C  S  M  V  L  L  *  K  P  S  L  K  P  S  R  R  R  S  F  L  *  F  L  F  Q  :  V  A  I  W  N  Q  I  N  R  K  H  Q  L  G  L  T  Q  E :   L  L  I  L  Y  L  S  T  A  F  C  C  T  S  *  K  E  V  L  M  P  E  T  S  Q  H  C  :  I  H  R  R  L  S  L  V  L  Q  L  L  D  T  M  V  F  N  Y  G  N  T  :  G  V  L  F  L  L  K  I  L  H  L  V  L  R  R  R  G  *  V  F  M  F  R :   I  Q  Q  L  L  C  *  L  L  H  L  L  Q  G  K  I  L  Y  L  E  L  L  L  *  Q  L  K  *  G  V  L  Q  V  L  K  F  H  Q  L  R  R  L  H  I  F  N  L  H  W  L  H  C  L  K  T  L  R  *  *  R  E  R  I  L  D  M  L  L  W :   T  *  I  P  R  *  L  T  W  I  L  M  D  Q  Q  M  P  L  N  L  E  L  V  T  S  M  S  L  P  L  *  S  Q  Q  Q  K  N  H  L  I  L  *  K  *  I  Q  T  R  V  K  M  N  V  Q  C  Q  K  R  I  L  V  C  V  I  N  I  W  T  L  V  M  K  L  L  E  R  L  Q  I  K  Q  G  K  T  P  R  *  I  *  L  K  M  Q  L  L  S  Q  M  I  R  Q  I  Y  F  M  M  F  V  *  T  L  D  C  L  M  V  Q  V  Y  K  *  S  F  S  L  *  I  L  *  G  W  S  S  T  M  L  I  K  T  K  Q  A  A  L  V  I  M  I  *  Q  F  L  I  L  A  R  F  L  V  M  K  :  I  *  I  E  H  C  Q  I  W  V  Y  T  I  G  K  H  *  *  S  F  F  V  T  K  W  M  L  H  H  C  M  V  *  T  I  R  L  R  V  T  I  Q  Q  L  E  A  M  Q  D  I  L  L  R  S  E  N  S  F  R  M  *  I  L  Y  L  T  L  V  E  V  L  T  H  Q  T  L  L  E  I  A  Y  G  N  M  :  G  L  A  I  *  S  I  A  G  Y  F  S  P  F  *  I  H  L  R  T  N  L  C  K  V  N  *  K  H  *  K  F  F  S  F  S  L  A  L  F  E  D  T  F  S  L  I  *  C  L  T  L  D  C  Q  C  N  C  F  S  M  C  *  Y  R  T  S  H  *  L  L  Q  I  K  *  S  N  E  F  V  T  E  L  F  K  I  H  Y  Q  V  Y  G  T  E  C  C  *  K  C  S  I  Y  K  W  M  R  *  G  H  N  S  L  T  V  R  F  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53123" stop="53109"/>
                    <exon start="52967" stop="52868"/>
                    <exon start="52441" stop="52389"/>
                    <exon start="52290" stop="52209"/>
                    <exon start="49904" stop="49839"/>
                    <exon start="49721" stop="49654"/>
                    <exon start="46846" stop="46640"/>
                    <exon start="46562" stop="46079"/>
                    <exon start="44023" stop="43772"/>
                    <exon start="43564" stop="43443"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMDYSMEQLLSPLVFNGSTVEAITEAKQKKKLFVVLVSGGNMESNQSETSTWLDPRVADSISKYCILLHILEGSTDARNFSALYPQEAIPCITVIGYNGVQLWQHGGFVSAENLASSLEKAWLSLHVQDTTTTLLTAALASRKDLVSGASSVTAEVGSSSSAQVSPAQAITHIQSPLATLSKNSQIVEGEDPGHAAMDIDSSLIDMDSHGSADAFESRIGDFNESTTVITTAEKPLDLVEVDSNKGKDECSMSKENPGLRDQHLDPSDEAPREIANKAGKDPEINIVEDAAAESDDSSNIFHDVCLNIRLPDGSSLQVKFLVVDTLRMVKHYVDKNQTSSIGYYDLAVPYPRKVFGDEDLDRTLSDLGLHNRQALIIVLRNKVDVTSLHGLNNPAESNHTTIGGDAGYFATIRKLFSYVNPLSYLGGSSNTSNTARDSIWQYGVGYMKHCWLFFSILNSSKDKLMQSELKALEVLFIFSSVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="53369" e_stop="53109"/>
            <exon e_start="52967" e_stop="52868"/>
            <exon e_start="52441" e_stop="52389"/>
            <exon e_start="52290" e_stop="52209"/>
            <exon e_start="49904" e_stop="49839"/>
            <exon e_start="49721" e_stop="49654"/>
            <exon e_start="46846" e_stop="46640"/>
            <exon e_start="46562" e_stop="46079"/>
            <exon e_start="44023" e_stop="43772"/>
            <exon e_start="43086" e_stop="42651"/>
            <exon e_start="42408" e_stop="42394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.837" acc_prob="0.086" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.617" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.780" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.621" e_score="0.981"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="53369" e_stop="53109" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.837" acc_prob="0.086">
            <gDNA_intron_boundary i_start="53108" i_stop="52968" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52967" e_stop="52868" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="52389" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.797">
            <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52290" e_stop="52209" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49904" e_stop="49839" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.617" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49721" e_stop="49654" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46846" e_stop="46640" e_length="207"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46562" e_stop="46079" e_length="484"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.915">
            <gDNA_intron_boundary i_start="46078" i_stop="44024" i_length="2055"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44023" e_stop="43772" e_length="252"/>
          </exon>
          <intron i_serial="9" don_prob="0.780" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43771" i_stop="43087" i_length="685"/>
          </intron>
          <exon e_serial="10" e_score="0.981">
            <gDNA_exon_boundary e_start="43086" e_stop="42651" e_length="436"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.621">
            <gDNA_intron_boundary i_start="42650" i_stop="42409" i_length="242"/>
          </intron>
          <exon e_serial="11" e_score="0.667">
            <gDNA_exon_boundary e_start="42408" e_stop="42394" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53369" stop="53109"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46079"/>
              <exon start="44023" stop="43772"/>
              <exon start="43086" stop="42750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53139" stop="53109"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49901" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49901" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49875" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46769" stop="46640"/>
              <exon start="46562" stop="46245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43018" stop="42651"/>
              <exon start="42408" stop="42394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43018" stop="42651"/>
              <exon start="42408" stop="42394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCT : ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG : GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA : GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT : ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG : GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG : GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG : GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAG : ATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG : GTCCAAACTCATCCACACCTCAAAATAATCAGAGCCTGGTAAGTAAAACTTCCACAACTAATAACAGAGGTAGAAAGCGAGCGTCATCTAGCTTTGGGAGCAACATCCACACCCTGAAACATGATGAAGATGAAAATCAGTCTGGTGACAAAAACACATTCTGGAATGGTAATTCTACTCAGTTTGGTGGAGATGAATAAGACTTTGATGTGTGTATAAATATTCTTCCCGTTAGTCATTGTAATAAGTTTTGGATTGAAGCCTGTTCCTTTACAAAAAATGATTGGCTTAAGCATAAACTGAGGAGATGCATTTTATGGTTAGAGAATATGGATGATGTTTTGAGCACAAATAGGTCTTGTATTTGTTATTCTAACAGAAATTTTGCTCCAAGTCCATCTATTATTGATAGAGTAATGTTCTAATTTTAGCCTAG : TAACAATAACAATAA</gDNA_template>
            <first_frame> Y  R  Q  Q  R  V  S  L  D  K  R  S  Q  L  W  K  K  K  S  I  L  *  P  K  P  D  C  Q  I  F  F  Y  F  V  F  K  Y  L  *  I  Q  Q  *  K  V  N  W  V  *  S  L  A  F  L  H  *  V  R  I  S  K  I  N  I  V  M  Q  S  F  L  D  L  Y  F  L  H  R  L  A  F  V  *  T  M  D  Y  S  :  M  E  Q  L  L  S  P  L  V  F  N  G  S  T  V  E  A  I  T  E  A  K  Q  K  K  K  L  F  V  V  L  V  S   : G  G  N  M  E  S  N  Q  S  E  T  S  T  W  L  D  P  R  :  V  A  D  S  I  S  K  Y  C  I  L  L  H  I  L  E  G  S  T  D  A  R  N  F  S  A  L   : Y  P  Q  E  A  I  P  C  I  T  V  I  G  Y  N  G  V  Q  L  W  Q  H   : G  G  F  V  S  A  E  N  L  A  S  S  L  E  K  A  W  L  S  L  H  V  Q  :  D  T  T  T  T  L  L  T  A  A  L  A  S  R  K  D  L  V  S  G  A  S  S  V  T  A  E  V  G  S  S  S  S  A  Q  V  S  P  A  Q  A  I  T  H  I  Q  S  P  L  A  T  L  S  K  N  S  Q  I  V  E  G  E  D  P  G  H  A  A  M  :  D  I  D  S  S  L  I  D  M  D  S  H  G  S  A  D  A  F  E  S  R  I  G  D  F  N  E  S  T  T  V  I  T  T  A  E  K  P  L  D  L  V  E  V  D  S  N  K  G  K  D  E  C  S  M  S  K  E  N  P  G  L  R  D  Q  H  L  D  P  S  D  E  A  P  R  E  I  A  N  K  A  G  K  D  P  E  I  N  I  V  E  D  A  A  A  E  S  D  D  S  S  N  I  F  H  D  V  C  L  N  I  R  L  P  D  G  S  S  L  Q  V  K  F  L  V  V  D  T  L  R  M  V  K  H  Y  V  D  K  N  Q  T  S  S  I  G  Y  Y  D  L  A  V  P  Y  P  R  K  V  F  G  D  E   : D  L  D  R  T  L  S  D  L  G  L  H  N  R  Q  A  L  I  I  V  L  R  N  K  V  D  V  T  S  L  H  G  L  N  N  P  A  E  S  N  H  T  T  I  G  G  D  A  G  Y  F  A  T  I  R  K  L  F  S  Y  V  N  P  L  S  Y  L  G  G  S  S  N  T  S  N  T  A  R  D  S  I  W  Q  Y   : G  P  N  S  S  T  P  Q  N  N  Q  S  L  V  S  K  T  S  T  T  N  N  R  G  R  K  R  A  S  S  S  F  G  S  N  I  H  T  L  K  H  D  E  D  E  N  Q  S  G  D  K  N  T  F  W  N  G  N  S  T  Q  F  G  G  D  E  *  D  F  D  V  C  I  N  I  L  P  V  S  H  C  N  K  F  W  I  E  A  C  S  F  T  K  N  D  W  L  K  H  K  L  R  R  C  I  L  W  L  E  N  M  D  D  V  L  S  T  N  R  S  C  I  C  Y  S  N  R  N  F  A  P  S  P  S  I  I  D  R  V  M  F  *  F  *  P  S :   N  N  N  N   </first_frame>
            <second_frame>  I  V  N  K  E  C  L  S  I  K  E  V  S  F  G  K  K  N  Q  F  C  S  Q  N  Q  T  V  R  F  S  F  I  L  Y  L  N  I  F  E  F  N  N  K  R  *  I  G  Y  N  L  L  L  F  F  T  K  L  G  S  Q  K  L  I  *  L  C  S  H  S  *  I  F  T  F  C  T  G  L  R  L  F  E  L  W  I  T  L :   W  S  N  F  Y  L  L  S  C  S  M  V  L  L  *  K  P  S  L  K  P  S  R  R  R  S  F  L  *  F  L  F  Q  :  V  A  I  W  N  Q  I  N  R  K  H  Q  L  G  L  T  Q  E :   L  L  I  L  Y  L  S  T  A  F  C  C  T  S  *  K  E  V  L  M  P  E  T  S  Q  H  C  :  I  H  R  R  L  S  L  V  L  Q  L  L  D  T  M  V  F  N  Y  G  N  T  :  G  V  L  F  L  L  K  I  L  H  L  V  L  R  R  R  G  *  V  F  M  F  R :   I  Q  Q  L  L  C  *  L  L  H  L  L  Q  G  K  I  L  Y  L  E  L  L  L  *  Q  L  K  *  G  V  L  Q  V  L  K  F  H  Q  L  R  R  L  H  I  F  N  L  H  W  L  H  C  L  K  T  L  R  *  *  R  E  R  I  L  D  M  L  L  W :   T  *  I  P  R  *  L  T  W  I  L  M  D  Q  Q  M  P  L  N  L  E  L  V  T  S  M  S  L  P  L  *  S  Q  Q  Q  K  N  H  L  I  L  *  K  *  I  Q  T  R  V  K  M  N  V  Q  C  Q  K  R  I  L  V  C  V  I  N  I  W  T  L  V  M  K  L  L  E  R  L  Q  I  K  Q  G  K  T  P  R  *  I  *  L  K  M  Q  L  L  S  Q  M  I  R  Q  I  Y  F  M  M  F  V  *  T  L  D  C  L  M  V  Q  V  Y  K  *  S  F  S  L  *  I  L  *  G  W  S  S  T  M  L  I  K  T  K  Q  A  A  L  V  I  M  I  *  Q  F  L  I  L  A  R  F  L  V  M  K  :  I  *  I  E  H  C  Q  I  W  V  Y  T  I  G  K  H  *  *  S  F  F  V  T  K  W  M  L  H  H  C  M  V  *  T  I  R  L  R  V  T  I  Q  Q  L  E  A  M  Q  D  I  L  L  R  S  E  N  S  F  R  M  *  I  L  Y  L  T  L  V  E  V  L  T  H  Q  T  L  L  E  I  A  Y  G  N  M  :  V  Q  T  H  P  H  L  K  I  I  R  A  W  *  V  K  L  P  Q  L  I  T  E  V  E  S  E  R  H  L  A  L  G  A  T  S  T  P  *  N  M  M  K  M  K  I  S  L  V  T  K  T  H  S  G  M  V  I  L  L  S  L  V  E  M  N  K  T  L  M  C  V  *  I  F  F  P  L  V  I  V  I  S  F  G  L  K  P  V  P  L  Q  K  M  I  G  L  S  I  N  *  G  D  A  F  Y  G  *  R  I  W  M  M  F  *  A  Q  I  G  L  V  F  V  I  L  T  E  I  L  L  Q  V  H  L  L  L  I  E  *  C  S  N  F  S  L   : V  T  I  T  I  </second_frame>
            <third_frame>   S  S  T  K  S  V  S  R  *  K  K  S  A  L  E  K  K  I  N  F  V  A  K  T  R  L  S  D  F  L  L  F  C  I  *  I  S  L  N  S  T  I  K  G  E  L  G  I  I  S  C  F  S  S  L  S  *  D  L  K  N  *  Y  S  Y  A  V  I  P  R  S  L  L  S  A  Q  A  C  V  C  L  N  Y  G  L  L   : Y  G  A  T  F  I  S  S  R  V  Q  W  F  Y  C  R  S  H  H  *  S  Q  A  E  E  E  A  F  C  S  S  C  F  R :   W  Q  Y  G  I  K  S  I  G  N  I  N  L  A  *  P  K   : S  C  *  F  Y  I  *  V  L  H  F  V  A  H  P  R  R  K  Y  *  C  Q  K  L  L  S  I  V :   S  T  G  G  Y  P  L  Y  Y  S  Y  W  I  Q  W  C  S  T  M  A  T  R :   G  F  C  F  C  *  K  S  C  I  *  S  *  E  G  V  V  K  S  S  C  S   : G  Y  N  N  Y  F  V  D  C  C  T  C  F  K  E  R  S  C  I  W  S  F  F  C  N  S  *  S  R  E  F  F  K  C  S  S  F  T  S  S  G  D  Y  T  Y  S  I  S  I  G  Y  T  V  *  K  L  S  D  S  R  G  R  G  S  W  T  C  C  Y   : G  H  R  F  L  A  D  *  H  G  F  S  W  I  S  R  C  L  *  I  *  N  W  *  L  Q  *  V  Y  H  C  D  H  N  S  R  K  T  T  *  S  C  R  S  R  F  K  Q  G  *  R  *  M  F  N  V  K  R  E  S  W  F  A  *  S  T  F  G  P  *  *  *  S  S  *  R  D  C  K  *  S  R  E  R  P  R  D  K  Y  S  *  R  C  S  C  *  V  R  *  F  V  K  Y  I  S  *  C  L  F  K  H  *  I  A  *  W  F  K  F  T  S  E  V  S  R  C  R  Y  F  K  D  G  Q  A  L  C  *  *  K  P  N  K  Q  H  W  L  L  *  S  S  S  S  L  S  S  Q  G  F  W  *  *  R :   S  R  *  N  I  V  R  F  G  F  T  Q  *  A  S  T  D  N  R  S  S  *  Q  S  G  C  Y  I  I  A  W  S  K  Q  S  G  *  E  *  P  Y  N  N  W  R  R  C  R  I  F  C  Y  D  Q  K  T  L  F  V  C  K  S  F  I  L  P  W  W  K  F  *  H  I  K  H  C  S  R  *  H  M  A  I  W :   S  K  L  I  H  T  S  K  *  S  E  P  G  K  *  N  F  H  N  *  *  Q  R  *  K  A  S  V  I  *  L  W  E  Q  H  P  H  P  E  T  *  *  R  *  K  S  V  W  *  Q  K  H  I  L  E  W  *  F  Y  S  V  W  W  R  *  I  R  L  *  C  V  Y  K  Y  S  S  R  *  S  L  *  *  V  L  D  *  S  L  F  L  Y  K  K  *  L  A  *  A  *  T  E  E  M  H  F  M  V  R  E  Y  G  *  C  F  E  H  K  *  V  L  Y  L  L  F  *  Q  K  F  C  S  K  S  I  Y  Y  *  *  S  N  V  L  I  L  A  *  :  *  Q  *  Q  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53123" stop="53109"/>
                    <exon start="52967" stop="52868"/>
                    <exon start="52441" stop="52389"/>
                    <exon start="52290" stop="52209"/>
                    <exon start="49904" stop="49839"/>
                    <exon start="49721" stop="49654"/>
                    <exon start="46846" stop="46640"/>
                    <exon start="46562" stop="46079"/>
                    <exon start="44023" stop="43772"/>
                    <exon start="43086" stop="42887"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1524</number_coding_nucleotides>
                  <number_encoded_amino_acids>508</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMDYSMEQLLSPLVFNGSTVEAITEAKQKKKLFVVLVSGGNMESNQSETSTWLDPRVADSISKYCILLHILEGSTDARNFSALYPQEAIPCITVIGYNGVQLWQHGGFVSAENLASSLEKAWLSLHVQDTTTTLLTAALASRKDLVSGASSVTAEVGSSSSAQVSPAQAITHIQSPLATLSKNSQIVEGEDPGHAAMDIDSSLIDMDSHGSADAFESRIGDFNESTTVITTAEKPLDLVEVDSNKGKDECSMSKENPGLRDQHLDPSDEAPREIANKAGKDPEINIVEDAAAESDDSSNIFHDVCLNIRLPDGSSLQVKFLVVDTLRMVKHYVDKNQTSSIGYYDLAVPYPRKVFGDEDLDRTLSDLGLHNRQALIIVLRNKVDVTSLHGLNNPAESNHTTIGGDAGYFATIRKLFSYVNPLSYLGGSSNTSNTARDSIWQYGPNSSTPQNNQSLVSKTSTTNNRGRKRASSSFGSNIHTLKHDEDENQSGDKNTFWNGNSTQFGGDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42886" stop="42662"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFDVCINILPVSHCNKFWIEACSFTKNDWLKHKLRRCILWLENMDDVLSTNRSCICYSNRNFAPSPSIIDRVMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="53369" e_stop="53109"/>
            <exon e_start="52967" e_stop="52868"/>
            <exon e_start="52441" e_stop="52389"/>
            <exon e_start="52290" e_stop="52209"/>
            <exon e_start="49904" e_stop="49839"/>
            <exon e_start="49721" e_stop="49654"/>
            <exon e_start="46846" e_stop="46640"/>
            <exon e_start="46562" e_stop="46079"/>
            <exon e_start="44023" e_stop="43772"/>
            <exon e_start="43086" e_stop="42732"/>
            <exon e_start="42408" e_stop="42382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.837" acc_prob="0.086" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.617" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.780" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.621" e_score="0.970"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="53369" e_stop="53109" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.837" acc_prob="0.086">
            <gDNA_intron_boundary i_start="53108" i_stop="52968" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52967" e_stop="52868" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="52389" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.797">
            <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52290" e_stop="52209" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49904" e_stop="49839" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.617" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49721" e_stop="49654" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46846" e_stop="46640" e_length="207"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46562" e_stop="46079" e_length="484"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.915">
            <gDNA_intron_boundary i_start="46078" i_stop="44024" i_length="2055"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44023" e_stop="43772" e_length="252"/>
          </exon>
          <intron i_serial="9" don_prob="0.780" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43771" i_stop="43087" i_length="685"/>
          </intron>
          <exon e_serial="10" e_score="0.970">
            <gDNA_exon_boundary e_start="43086" e_stop="42732" e_length="355"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.621">
            <gDNA_intron_boundary i_start="42731" i_stop="42409" i_length="323"/>
          </intron>
          <exon e_serial="11" e_score="0.556">
            <gDNA_exon_boundary e_start="42408" e_stop="42382" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53369" stop="53109"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46079"/>
              <exon start="44023" stop="43772"/>
              <exon start="43086" stop="42750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53139" stop="53109"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49901" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49901" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49875" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46769" stop="46640"/>
              <exon start="46562" stop="46245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43872" stop="43772"/>
              <exon start="43086" stop="42732"/>
              <exon start="42408" stop="42382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364838" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCT : ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG : GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA : GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT : ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG : GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG : GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG : GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAG : ATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG : GTCCAAACTCATCCACACCTCAAAATAATCAGAGCCTGGTAAGTAAAACTTCCACAACTAATAACAGAGGTAGAAAGCGAGCGTCATCTAGCTTTGGGAGCAACATCCACACCCTGAAACATGATGAAGATGAAAATCAGTCTGGTGACAAAAACACATTCTGGAATGGTAATTCTACTCAGTTTGGTGGAGATGAATAAGACTTTGATGTGTGTATAAATATTCTTCCCGTTAGTCATTGTAATAAGTTTTGGATTGAAGCCTGTTCCTTTACAAAAAATGATTGGCTTAAGCATAAACTGAGGAGATGCATTTTATGGTTAGAGAATATGGATGATGTTTTGAGCACAAATAG : TAACAATAACAATAATTGATGAATTCA</gDNA_template>
            <first_frame> Y  R  Q  Q  R  V  S  L  D  K  R  S  Q  L  W  K  K  K  S  I  L  *  P  K  P  D  C  Q  I  F  F  Y  F  V  F  K  Y  L  *  I  Q  Q  *  K  V  N  W  V  *  S  L  A  F  L  H  *  V  R  I  S  K  I  N  I  V  M  Q  S  F  L  D  L  Y  F  L  H  R  L  A  F  V  *  T  M  D  Y  S  :  M  E  Q  L  L  S  P  L  V  F  N  G  S  T  V  E  A  I  T  E  A  K  Q  K  K  K  L  F  V  V  L  V  S   : G  G  N  M  E  S  N  Q  S  E  T  S  T  W  L  D  P  R  :  V  A  D  S  I  S  K  Y  C  I  L  L  H  I  L  E  G  S  T  D  A  R  N  F  S  A  L   : Y  P  Q  E  A  I  P  C  I  T  V  I  G  Y  N  G  V  Q  L  W  Q  H   : G  G  F  V  S  A  E  N  L  A  S  S  L  E  K  A  W  L  S  L  H  V  Q  :  D  T  T  T  T  L  L  T  A  A  L  A  S  R  K  D  L  V  S  G  A  S  S  V  T  A  E  V  G  S  S  S  S  A  Q  V  S  P  A  Q  A  I  T  H  I  Q  S  P  L  A  T  L  S  K  N  S  Q  I  V  E  G  E  D  P  G  H  A  A  M  :  D  I  D  S  S  L  I  D  M  D  S  H  G  S  A  D  A  F  E  S  R  I  G  D  F  N  E  S  T  T  V  I  T  T  A  E  K  P  L  D  L  V  E  V  D  S  N  K  G  K  D  E  C  S  M  S  K  E  N  P  G  L  R  D  Q  H  L  D  P  S  D  E  A  P  R  E  I  A  N  K  A  G  K  D  P  E  I  N  I  V  E  D  A  A  A  E  S  D  D  S  S  N  I  F  H  D  V  C  L  N  I  R  L  P  D  G  S  S  L  Q  V  K  F  L  V  V  D  T  L  R  M  V  K  H  Y  V  D  K  N  Q  T  S  S  I  G  Y  Y  D  L  A  V  P  Y  P  R  K  V  F  G  D  E   : D  L  D  R  T  L  S  D  L  G  L  H  N  R  Q  A  L  I  I  V  L  R  N  K  V  D  V  T  S  L  H  G  L  N  N  P  A  E  S  N  H  T  T  I  G  G  D  A  G  Y  F  A  T  I  R  K  L  F  S  Y  V  N  P  L  S  Y  L  G  G  S  S  N  T  S  N  T  A  R  D  S  I  W  Q  Y   : G  P  N  S  S  T  P  Q  N  N  Q  S  L  V  S  K  T  S  T  T  N  N  R  G  R  K  R  A  S  S  S  F  G  S  N  I  H  T  L  K  H  D  E  D  E  N  Q  S  G  D  K  N  T  F  W  N  G  N  S  T  Q  F  G  G  D  E  *  D  F  D  V  C  I  N  I  L  P  V  S  H  C  N  K  F  W  I  E  A  C  S  F  T  K  N  D  W  L  K  H  K  L  R  R  C  I  L  W  L  E  N  M  D  D  V  L  S  T  N  S :   N  N  N  N  N  *  *  I   </first_frame>
            <second_frame>  I  V  N  K  E  C  L  S  I  K  E  V  S  F  G  K  K  N  Q  F  C  S  Q  N  Q  T  V  R  F  S  F  I  L  Y  L  N  I  F  E  F  N  N  K  R  *  I  G  Y  N  L  L  L  F  F  T  K  L  G  S  Q  K  L  I  *  L  C  S  H  S  *  I  F  T  F  C  T  G  L  R  L  F  E  L  W  I  T  L :   W  S  N  F  Y  L  L  S  C  S  M  V  L  L  *  K  P  S  L  K  P  S  R  R  R  S  F  L  *  F  L  F  Q  :  V  A  I  W  N  Q  I  N  R  K  H  Q  L  G  L  T  Q  E :   L  L  I  L  Y  L  S  T  A  F  C  C  T  S  *  K  E  V  L  M  P  E  T  S  Q  H  C  :  I  H  R  R  L  S  L  V  L  Q  L  L  D  T  M  V  F  N  Y  G  N  T  :  G  V  L  F  L  L  K  I  L  H  L  V  L  R  R  R  G  *  V  F  M  F  R :   I  Q  Q  L  L  C  *  L  L  H  L  L  Q  G  K  I  L  Y  L  E  L  L  L  *  Q  L  K  *  G  V  L  Q  V  L  K  F  H  Q  L  R  R  L  H  I  F  N  L  H  W  L  H  C  L  K  T  L  R  *  *  R  E  R  I  L  D  M  L  L  W :   T  *  I  P  R  *  L  T  W  I  L  M  D  Q  Q  M  P  L  N  L  E  L  V  T  S  M  S  L  P  L  *  S  Q  Q  Q  K  N  H  L  I  L  *  K  *  I  Q  T  R  V  K  M  N  V  Q  C  Q  K  R  I  L  V  C  V  I  N  I  W  T  L  V  M  K  L  L  E  R  L  Q  I  K  Q  G  K  T  P  R  *  I  *  L  K  M  Q  L  L  S  Q  M  I  R  Q  I  Y  F  M  M  F  V  *  T  L  D  C  L  M  V  Q  V  Y  K  *  S  F  S  L  *  I  L  *  G  W  S  S  T  M  L  I  K  T  K  Q  A  A  L  V  I  M  I  *  Q  F  L  I  L  A  R  F  L  V  M  K  :  I  *  I  E  H  C  Q  I  W  V  Y  T  I  G  K  H  *  *  S  F  F  V  T  K  W  M  L  H  H  C  M  V  *  T  I  R  L  R  V  T  I  Q  Q  L  E  A  M  Q  D  I  L  L  R  S  E  N  S  F  R  M  *  I  L  Y  L  T  L  V  E  V  L  T  H  Q  T  L  L  E  I  A  Y  G  N  M  :  V  Q  T  H  P  H  L  K  I  I  R  A  W  *  V  K  L  P  Q  L  I  T  E  V  E  S  E  R  H  L  A  L  G  A  T  S  T  P  *  N  M  M  K  M  K  I  S  L  V  T  K  T  H  S  G  M  V  I  L  L  S  L  V  E  M  N  K  T  L  M  C  V  *  I  F  F  P  L  V  I  V  I  S  F  G  L  K  P  V  P  L  Q  K  M  I  G  L  S  I  N  *  G  D  A  F  Y  G  *  R  I  W  M  M  F  *  A  Q  I   : V  T  I  T  I  I  D  E  F  </second_frame>
            <third_frame>   S  S  T  K  S  V  S  R  *  K  K  S  A  L  E  K  K  I  N  F  V  A  K  T  R  L  S  D  F  L  L  F  C  I  *  I  S  L  N  S  T  I  K  G  E  L  G  I  I  S  C  F  S  S  L  S  *  D  L  K  N  *  Y  S  Y  A  V  I  P  R  S  L  L  S  A  Q  A  C  V  C  L  N  Y  G  L  L   : Y  G  A  T  F  I  S  S  R  V  Q  W  F  Y  C  R  S  H  H  *  S  Q  A  E  E  E  A  F  C  S  S  C  F  R :   W  Q  Y  G  I  K  S  I  G  N  I  N  L  A  *  P  K   : S  C  *  F  Y  I  *  V  L  H  F  V  A  H  P  R  R  K  Y  *  C  Q  K  L  L  S  I  V :   S  T  G  G  Y  P  L  Y  Y  S  Y  W  I  Q  W  C  S  T  M  A  T  R :   G  F  C  F  C  *  K  S  C  I  *  S  *  E  G  V  V  K  S  S  C  S   : G  Y  N  N  Y  F  V  D  C  C  T  C  F  K  E  R  S  C  I  W  S  F  F  C  N  S  *  S  R  E  F  F  K  C  S  S  F  T  S  S  G  D  Y  T  Y  S  I  S  I  G  Y  T  V  *  K  L  S  D  S  R  G  R  G  S  W  T  C  C  Y   : G  H  R  F  L  A  D  *  H  G  F  S  W  I  S  R  C  L  *  I  *  N  W  *  L  Q  *  V  Y  H  C  D  H  N  S  R  K  T  T  *  S  C  R  S  R  F  K  Q  G  *  R  *  M  F  N  V  K  R  E  S  W  F  A  *  S  T  F  G  P  *  *  *  S  S  *  R  D  C  K  *  S  R  E  R  P  R  D  K  Y  S  *  R  C  S  C  *  V  R  *  F  V  K  Y  I  S  *  C  L  F  K  H  *  I  A  *  W  F  K  F  T  S  E  V  S  R  C  R  Y  F  K  D  G  Q  A  L  C  *  *  K  P  N  K  Q  H  W  L  L  *  S  S  S  S  L  S  S  Q  G  F  W  *  *  R :   S  R  *  N  I  V  R  F  G  F  T  Q  *  A  S  T  D  N  R  S  S  *  Q  S  G  C  Y  I  I  A  W  S  K  Q  S  G  *  E  *  P  Y  N  N  W  R  R  C  R  I  F  C  Y  D  Q  K  T  L  F  V  C  K  S  F  I  L  P  W  W  K  F  *  H  I  K  H  C  S  R  *  H  M  A  I  W :   S  K  L  I  H  T  S  K  *  S  E  P  G  K  *  N  F  H  N  *  *  Q  R  *  K  A  S  V  I  *  L  W  E  Q  H  P  H  P  E  T  *  *  R  *  K  S  V  W  *  Q  K  H  I  L  E  W  *  F  Y  S  V  W  W  R  *  I  R  L  *  C  V  Y  K  Y  S  S  R  *  S  L  *  *  V  L  D  *  S  L  F  L  Y  K  K  *  L  A  *  A  *  T  E  E  M  H  F  M  V  R  E  Y  G  *  C  F  E  H  K  *  :  *  Q  *  Q  *  L  M  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53123" stop="53109"/>
                    <exon start="52967" stop="52868"/>
                    <exon start="52441" stop="52389"/>
                    <exon start="52290" stop="52209"/>
                    <exon start="49904" stop="49839"/>
                    <exon start="49721" stop="49654"/>
                    <exon start="46846" stop="46640"/>
                    <exon start="46562" stop="46079"/>
                    <exon start="44023" stop="43772"/>
                    <exon start="43086" stop="42887"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1524</number_coding_nucleotides>
                  <number_encoded_amino_acids>508</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMDYSMEQLLSPLVFNGSTVEAITEAKQKKKLFVVLVSGGNMESNQSETSTWLDPRVADSISKYCILLHILEGSTDARNFSALYPQEAIPCITVIGYNGVQLWQHGGFVSAENLASSLEKAWLSLHVQDTTTTLLTAALASRKDLVSGASSVTAEVGSSSSAQVSPAQAITHIQSPLATLSKNSQIVEGEDPGHAAMDIDSSLIDMDSHGSADAFESRIGDFNESTTVITTAEKPLDLVEVDSNKGKDECSMSKENPGLRDQHLDPSDEAPREIANKAGKDPEINIVEDAAAESDDSSNIFHDVCLNIRLPDGSSLQVKFLVVDTLRMVKHYVDKNQTSSIGYYDLAVPYPRKVFGDEDLDRTLSDLGLHNRQALIIVLRNKVDVTSLHGLNNPAESNHTTIGGDAGYFATIRKLFSYVNPLSYLGGSSNTSNTARDSIWQYGPNSSTPQNNQSLVSKTSTTNNRGRKRASSSFGSNIHTLKHDEDENQSGDKNTFWNGNSTQFGGDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="54277" e_stop="54161"/>
            <exon e_start="52967" e_stop="52868"/>
            <exon e_start="52441" e_stop="52389"/>
            <exon e_start="52290" e_stop="52209"/>
            <exon e_start="49904" e_stop="49812"/>
            <exon e_start="49721" e_stop="49654"/>
            <exon e_start="46846" e_stop="46640"/>
            <exon e_start="46562" e_stop="46079"/>
            <exon e_start="44023" e_stop="43772"/>
            <exon e_start="43564" e_stop="43212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.086" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.991" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.780" acc_prob="0.668" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="54277" e_stop="54161" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.086">
            <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52967" e_stop="52868" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="52389" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.797">
            <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52290" e_stop="52209" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49904" e_stop="49812" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49811" i_stop="49722" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49721" e_stop="49654" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="46846" e_stop="46640" e_length="207"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46562" e_stop="46079" e_length="484"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.915">
            <gDNA_intron_boundary i_start="46078" i_stop="44024" i_length="2055"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44023" e_stop="43772" e_length="252"/>
          </exon>
          <intron i_serial="9" don_prob="0.780" acc_prob="0.668">
            <gDNA_intron_boundary i_start="43771" i_stop="43565" i_length="207"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="43564" e_stop="43212" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54277" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54182" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49812"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46769" stop="46640"/>
              <exon start="46562" stop="46245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46361" stop="46079"/>
              <exon start="44023" stop="43772"/>
              <exon start="43564" stop="43397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46361" stop="46079"/>
              <exon start="44023" stop="43772"/>
              <exon start="43564" stop="43496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44005" stop="43772"/>
              <exon start="43564" stop="43212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTTCGTTTTACCGGTTTTCGGTAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT : ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG : GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA : GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT : ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTG : GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG : GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG : GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAG : ATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG : GGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAA</gDNA_template>
            <first_frame> C  F  S  F  Y  R  F  S  V  K  N  R  F  H  P  C  L  K  S  I  H  F  R  V  L  A  Q  N  S  D  *  S  E  *  R  R  N  Q  A  :  M  E  Q  L  L  S  P  L  V  F  N  G  S  T  V  E  A  I  T  E  A  K  Q  K  K  K  L  F  V  V  L  V  S   : G  G  N  M  E  S  N  Q  S  E  T  S  T  W  L  D  P  R  :  V  A  D  S  I  S  K  Y  C  I  L  L  H  I  L  E  G  S  T  D  A  R  N  F  S  A  L   : Y  P  Q  E  A  I  P  C  I  T  V  I  G  Y  N  G  V  Q  L  W  Q  H  G  M  D  Q  L  N  L  M  F   : G  G  F  V  S  A  E  N  L  A  S  S  L  E  K  A  W  L  S  L  H  V  Q  :  D  T  T  T  T  L  L  T  A  A  L  A  S  R  K  D  L  V  S  G  A  S  S  V  T  A  E  V  G  S  S  S  S  A  Q  V  S  P  A  Q  A  I  T  H  I  Q  S  P  L  A  T  L  S  K  N  S  Q  I  V  E  G  E  D  P  G  H  A  A  M  :  D  I  D  S  S  L  I  D  M  D  S  H  G  S  A  D  A  F  E  S  R  I  G  D  F  N  E  S  T  T  V  I  T  T  A  E  K  P  L  D  L  V  E  V  D  S  N  K  G  K  D  E  C  S  M  S  K  E  N  P  G  L  R  D  Q  H  L  D  P  S  D  E  A  P  R  E  I  A  N  K  A  G  K  D  P  E  I  N  I  V  E  D  A  A  A  E  S  D  D  S  S  N  I  F  H  D  V  C  L  N  I  R  L  P  D  G  S  S  L  Q  V  K  F  L  V  V  D  T  L  R  M  V  K  H  Y  V  D  K  N  Q  T  S  S  I  G  Y  Y  D  L  A  V  P  Y  P  R  K  V  F  G  D  E   : D  L  D  R  T  L  S  D  L  G  L  H  N  R  Q  A  L  I  I  V  L  R  N  K  V  D  V  T  S  L  H  G  L  N  N  P  A  E  S  N  H  T  T  I  G  G  D  A  G  Y  F  A  T  I  R  K  L  F  S  Y  V  N  P  L  S  Y  L  G  G  S  S  N  T  S  N  T  A  R  D  S  I  W  Q  Y   : G  V  G  Y  M  K  H  C  W  L  F  F  S  I  L  N  S  S  K  D  K  L  M  Q  S  E  L  K  A  L  E  V  L  F  I  F  S  S  V  I  *  R  H  L  F  P  D  L  V  P  D  F  G  L  S  V  *  L  L  L  H  V  L  I  S  Y  F  T  L  A  F  T  D  *  I  K  Q  *  V  C  N  *  A  F  Q  D  P  L  S  G  V  W  N  *  V  L  L  K  M  F  Y  L  *  M  D  E  I  R  A  *  L  I  D  S  E  V  Q  K </first_frame>
            <second_frame>  V  F  R  F  T  G  F  R  *  K  T  V  S  T  L  V  *  K  A  F  I  L  E  F  W  L  K  I  P  I  D  R  S  E  G  A  I  K  L :   W  S  N  F  Y  L  L  S  C  S  M  V  L  L  *  K  P  S  L  K  P  S  R  R  R  S  F  L  *  F  L  F  Q  :  V  A  I  W  N  Q  I  N  R  K  H  Q  L  G  L  T  Q  E :   L  L  I  L  Y  L  S  T  A  F  C  C  T  S  *  K  E  V  L  M  P  E  T  S  Q  H  C  :  I  H  R  R  L  S  L  V  L  Q  L  L  D  T  M  V  F  N  Y  G  N  T  V  W  I  S  L  I  *  C  L  :  G  V  L  F  L  L  K  I  L  H  L  V  L  R  R  R  G  *  V  F  M  F  R :   I  Q  Q  L  L  C  *  L  L  H  L  L  Q  G  K  I  L  Y  L  E  L  L  L  *  Q  L  K  *  G  V  L  Q  V  L  K  F  H  Q  L  R  R  L  H  I  F  N  L  H  W  L  H  C  L  K  T  L  R  *  *  R  E  R  I  L  D  M  L  L  W :   T  *  I  P  R  *  L  T  W  I  L  M  D  Q  Q  M  P  L  N  L  E  L  V  T  S  M  S  L  P  L  *  S  Q  Q  Q  K  N  H  L  I  L  *  K  *  I  Q  T  R  V  K  M  N  V  Q  C  Q  K  R  I  L  V  C  V  I  N  I  W  T  L  V  M  K  L  L  E  R  L  Q  I  K  Q  G  K  T  P  R  *  I  *  L  K  M  Q  L  L  S  Q  M  I  R  Q  I  Y  F  M  M  F  V  *  T  L  D  C  L  M  V  Q  V  Y  K  *  S  F  S  L  *  I  L  *  G  W  S  S  T  M  L  I  K  T  K  Q  A  A  L  V  I  M  I  *  Q  F  L  I  L  A  R  F  L  V  M  K  :  I  *  I  E  H  C  Q  I  W  V  Y  T  I  G  K  H  *  *  S  F  F  V  T  K  W  M  L  H  H  C  M  V  *  T  I  R  L  R  V  T  I  Q  Q  L  E  A  M  Q  D  I  L  L  R  S  E  N  S  F  R  M  *  I  L  Y  L  T  L  V  E  V  L  T  H  Q  T  L  L  E  I  A  Y  G  N  M  :  G  L  A  I  *  S  I  A  G  Y  F  S  P  F  *  I  H  L  R  T  N  L  C  K  V  N  *  K  H  *  K  F  F  S  F  S  L  A  L  F  E  D  T  F  S  L  I  *  C  L  T  L  D  C  Q  C  N  C  F  S  M  C  *  Y  R  T  S  H  *  L  L  Q  I  K  *  S  N  E  F  V  T  E  L  F  K  I  H  Y  Q  V  Y  G  T  E  C  C  *  K  C  S  I  Y  K  W  M  R  *  G  H  N  S  L  T  V  R  F  R   </second_frame>
            <third_frame>   F  F  V  L  P  V  F  G  K  K  P  F  P  P  L  F  E  K  H  S  F  *  S  F  G  S  K  F  R  L  I  G  V  K  A  Q  S  S   : Y  G  A  T  F  I  S  S  R  V  Q  W  F  Y  C  R  S  H  H  *  S  Q  A  E  E  E  A  F  C  S  S  C  F  R :   W  Q  Y  G  I  K  S  I  G  N  I  N  L  A  *  P  K   : S  C  *  F  Y  I  *  V  L  H  F  V  A  H  P  R  R  K  Y  *  C  Q  K  L  L  S  I  V :   S  T  G  G  Y  P  L  Y  Y  S  Y  W  I  Q  W  C  S  T  M  A  T  R  Y  G  S  A  *  S  N  V  W :   G  F  C  F  C  *  K  S  C  I  *  S  *  E  G  V  V  K  S  S  C  S   : G  Y  N  N  Y  F  V  D  C  C  T  C  F  K  E  R  S  C  I  W  S  F  F  C  N  S  *  S  R  E  F  F  K  C  S  S  F  T  S  S  G  D  Y  T  Y  S  I  S  I  G  Y  T  V  *  K  L  S  D  S  R  G  R  G  S  W  T  C  C  Y   : G  H  R  F  L  A  D  *  H  G  F  S  W  I  S  R  C  L  *  I  *  N  W  *  L  Q  *  V  Y  H  C  D  H  N  S  R  K  T  T  *  S  C  R  S  R  F  K  Q  G  *  R  *  M  F  N  V  K  R  E  S  W  F  A  *  S  T  F  G  P  *  *  *  S  S  *  R  D  C  K  *  S  R  E  R  P  R  D  K  Y  S  *  R  C  S  C  *  V  R  *  F  V  K  Y  I  S  *  C  L  F  K  H  *  I  A  *  W  F  K  F  T  S  E  V  S  R  C  R  Y  F  K  D  G  Q  A  L  C  *  *  K  P  N  K  Q  H  W  L  L  *  S  S  S  S  L  S  S  Q  G  F  W  *  *  R :   S  R  *  N  I  V  R  F  G  F  T  Q  *  A  S  T  D  N  R  S  S  *  Q  S  G  C  Y  I  I  A  W  S  K  Q  S  G  *  E  *  P  Y  N  N  W  R  R  C  R  I  F  C  Y  D  Q  K  T  L  F  V  C  K  S  F  I  L  P  W  W  K  F  *  H  I  K  H  C  S  R  *  H  M  A  I  W :   G  W  L  Y  E  A  L  L  A  I  F  L  H  F  E  F  I  *  G  Q  T  Y  A  K  *  I  E  S  T  R  S  S  F  H  F  L  *  R  Y  L  K  T  P  F  P  *  F  S  A  *  L  W  T  V  S  V  I  A  S  P  C  A  N  I  V  L  H  T  S  F  Y  R  L  N  K  A  M  S  L  *  L  S  F  S  R  S  I  I  R  C  M  E  L  S  V  V  K  N  V  L  F  I  N  G  *  D  K  G  I  T  H  *  Q  *  G  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54175" stop="54161"/>
                    <exon start="52967" stop="52868"/>
                    <exon start="52441" stop="52389"/>
                    <exon start="52290" stop="52209"/>
                    <exon start="49904" stop="49812"/>
                    <exon start="49721" stop="49654"/>
                    <exon start="46846" stop="46640"/>
                    <exon start="46562" stop="46079"/>
                    <exon start="44023" stop="43772"/>
                    <exon start="43564" stop="43443"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1473</number_coding_nucleotides>
                  <number_encoded_amino_acids>491</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNQAMEQLLSPLVFNGSTVEAITEAKQKKKLFVVLVSGGNMESNQSETSTWLDPRVADSISKYCILLHILEGSTDARNFSALYPQEAIPCITVIGYNGVQLWQHGMDQLNLMFGGFVSAENLASSLEKAWLSLHVQDTTTTLLTAALASRKDLVSGASSVTAEVGSSSSAQVSPAQAITHIQSPLATLSKNSQIVEGEDPGHAAMDIDSSLIDMDSHGSADAFESRIGDFNESTTVITTAEKPLDLVEVDSNKGKDECSMSKENPGLRDQHLDPSDEAPREIANKAGKDPEINIVEDAAAESDDSSNIFHDVCLNIRLPDGSSLQVKFLVVDTLRMVKHYVDKNQTSSIGYYDLAVPYPRKVFGDEDLDRTLSDLGLHNRQALIIVLRNKVDVTSLHGLNNPAESNHTTIGGDAGYFATIRKLFSYVNPLSYLGGSSNTSNTARDSIWQYGVGYMKHCWLFFSILNSSKDKLMQSELKALEVLFIFSSVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="50073" e_stop="49654"/>
            <exon e_start="46846" e_stop="46640"/>
            <exon e_start="46562" e_stop="46079"/>
            <exon e_start="44023" e_stop="43772"/>
            <exon e_start="43564" e_stop="43212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.991" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.780" acc_prob="0.668" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="50073" e_stop="49654" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="46846" e_stop="46640" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46562" e_stop="46079" e_length="484"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.915">
            <gDNA_intron_boundary i_start="46078" i_stop="44024" i_length="2055"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44023" e_stop="43772" e_length="252"/>
          </exon>
          <intron i_serial="4" don_prob="0.780" acc_prob="0.668">
            <gDNA_intron_boundary i_start="43771" i_stop="43565" i_length="207"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43564" e_stop="43212" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50073" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46769" stop="46640"/>
              <exon start="46562" stop="46245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46361" stop="46079"/>
              <exon start="44023" stop="43772"/>
              <exon start="43564" stop="43397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46361" stop="46079"/>
              <exon start="44023" stop="43772"/>
              <exon start="43564" stop="43496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44005" stop="43772"/>
              <exon start="43564" stop="43212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG : GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG : GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTTTACAAGTGAAGTTTCTCGTTGTAGATACTTTAAGGATGGTCAAGCACTATGTTGATAAAAACCAAACAAGCAGCATTGGTTATTATGATCTAGCAGTTCCTTATCCTCGCAAGGTTTTTGGTGATGAAG : ATCTAGATAGAACATTGTCAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG : GGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAA</gDNA_template>
            <first_frame> R  S  S  V  V  S  V  I  Y  S  G  S  V  L  E  A  I  *  N  F  V  N  S  F  L  V  D  E  S  Y  N  S  E  I  L  L  S  M  P  C  C  L  C  A  L  F  M  *  I  Y  P  Y  M  S  Y  I  D  P  Q  E  A  I  P  C  I  T  V  I  G  Y  N  G  V  Q  L  W  Q  H  G  M  D  Q  L  N  L  M  F  G  N  K  K  H  G  M  I  S  C  L  R  R  N  *  V  V  A  S  L  S  Y  L  L  I  M  Y  L  I  L  G  G  F  V  S  A  E  N  L  A  S  S  L  E  K  A  W  L  S  L  H  V  Q  :  D  T  T  T  T  L  L  T  A  A  L  A  S  R  K  D  L  V  S  G  A  S  S  V  T  A  E  V  G  S  S  S  S  A  Q  V  S  P  A  Q  A  I  T  H  I  Q  S  P  L  A  T  L  S  K  N  S  Q  I  V  E  G  E  D  P  G  H  A  A  M  :  D  I  D  S  S  L  I  D  M  D  S  H  G  S  A  D  A  F  E  S  R  I  G  D  F  N  E  S  T  T  V  I  T  T  A  E  K  P  L  D  L  V  E  V  D  S  N  K  G  K  D  E  C  S  M  S  K  E  N  P  G  L  R  D  Q  H  L  D  P  S  D  E  A  P  R  E  I  A  N  K  A  G  K  D  P  E  I  N  I  V  E  D  A  A  A  E  S  D  D  S  S  N  I  F  H  D  V  C  L  N  I  R  L  P  D  G  S  S  L  Q  V  K  F  L  V  V  D  T  L  R  M  V  K  H  Y  V  D  K  N  Q  T  S  S  I  G  Y  Y  D  L  A  V  P  Y  P  R  K  V  F  G  D  E   : D  L  D  R  T  L  S  D  L  G  L  H  N  R  Q  A  L  I  I  V  L  R  N  K  V  D  V  T  S  L  H  G  L  N  N  P  A  E  S  N  H  T  T  I  G  G  D  A  G  Y  F  A  T  I  R  K  L  F  S  Y  V  N  P  L  S  Y  L  G  G  S  S  N  T  S  N  T  A  R  D  S  I  W  Q  Y   : G  V  G  Y  M  K  H  C  W  L  F  F  S  I  L  N  S  S  K  D  K  L  M  Q  S  E  L  K  A  L  E  V  L  F  I  F  S  S  V  I  *  R  H  L  F  P  D  L  V  P  D  F  G  L  S  V  *  L  L  L  H  V  L  I  S  Y  F  T  L  A  F  T  D  *  I  K  Q  *  V  C  N  *  A  F  Q  D  P  L  S  G  V  W  N  *  V  L  L  K  M  F  Y  L  *  M  D  E  I  R  A  *  L  I  D  S  E  V  Q  K </first_frame>
            <second_frame>  G  V  Q  *  L  V  *  S  T  V  V  V  F  S  K  P  F  K  T  L  *  I  L  S  W  L  M  S  L  I  I  R  K  S  C  C  Q  C  H  A  V  Y  V  H  F  S  C  R  Y  T  L  T  *  A  T  *  I  H  R  R  L  S  L  V  L  Q  L  L  D  T  M  V  F  N  Y  G  N  T  V  W  I  S  L  I  *  C  L  V  I  K  N  M  A  *  L  V  V  *  D  V  T  E  L  L  H  L  F  L  I  S  *  L  C  I  *  F  *  G  V  L  F  L  L  K  I  L  H  L  V  L  R  R  R  G  *  V  F  M  F  R :   I  Q  Q  L  L  C  *  L  L  H  L  L  Q  G  K  I  L  Y  L  E  L  L  L  *  Q  L  K  *  G  V  L  Q  V  L  K  F  H  Q  L  R  R  L  H  I  F  N  L  H  W  L  H  C  L  K  T  L  R  *  *  R  E  R  I  L  D  M  L  L  W :   T  *  I  P  R  *  L  T  W  I  L  M  D  Q  Q  M  P  L  N  L  E  L  V  T  S  M  S  L  P  L  *  S  Q  Q  Q  K  N  H  L  I  L  *  K  *  I  Q  T  R  V  K  M  N  V  Q  C  Q  K  R  I  L  V  C  V  I  N  I  W  T  L  V  M  K  L  L  E  R  L  Q  I  K  Q  G  K  T  P  R  *  I  *  L  K  M  Q  L  L  S  Q  M  I  R  Q  I  Y  F  M  M  F  V  *  T  L  D  C  L  M  V  Q  V  Y  K  *  S  F  S  L  *  I  L  *  G  W  S  S  T  M  L  I  K  T  K  Q  A  A  L  V  I  M  I  *  Q  F  L  I  L  A  R  F  L  V  M  K  :  I  *  I  E  H  C  Q  I  W  V  Y  T  I  G  K  H  *  *  S  F  F  V  T  K  W  M  L  H  H  C  M  V  *  T  I  R  L  R  V  T  I  Q  Q  L  E  A  M  Q  D  I  L  L  R  S  E  N  S  F  R  M  *  I  L  Y  L  T  L  V  E  V  L  T  H  Q  T  L  L  E  I  A  Y  G  N  M  :  G  L  A  I  *  S  I  A  G  Y  F  S  P  F  *  I  H  L  R  T  N  L  C  K  V  N  *  K  H  *  K  F  F  S  F  S  L  A  L  F  E  D  T  F  S  L  I  *  C  L  T  L  D  C  Q  C  N  C  F  S  M  C  *  Y  R  T  S  H  *  L  L  Q  I  K  *  S  N  E  F  V  T  E  L  F  K  I  H  Y  Q  V  Y  G  T  E  C  C  *  K  C  S  I  Y  K  W  M  R  *  G  H  N  S  L  T  V  R  F  R   </second_frame>
            <third_frame>   E  F  S  S  *  C  D  L  Q  W  *  C  S  R  S  H  L  K  L  C  E  F  F  L  G  *  *  V  L  *  F  G  N  L  A  V  N  A  M  L  S  M  C  T  F  H  V  D  I  P  L  H  E  L  H  R  S  T  G  G  Y  P  L  Y  Y  S  Y  W  I  Q  W  C  S  T  M  A  T  R  Y  G  S  A  *  S  N  V  W  *  *  K  T  W  H  D  *  L  F  E  T  *  L  S  C  C  I  S  F  L  S  L  N  Y  V  S  N  F  R  G  F  C  F  C  *  K  S  C  I  *  S  *  E  G  V  V  K  S  S  C  S   : G  Y  N  N  Y  F  V  D  C  C  T  C  F  K  E  R  S  C  I  W  S  F  F  C  N  S  *  S  R  E  F  F  K  C  S  S  F  T  S  S  G  D  Y  T  Y  S  I  S  I  G  Y  T  V  *  K  L  S  D  S  R  G  R  G  S  W  T  C  C  Y   : G  H  R  F  L  A  D  *  H  G  F  S  W  I  S  R  C  L  *  I  *  N  W  *  L  Q  *  V  Y  H  C  D  H  N  S  R  K  T  T  *  S  C  R  S  R  F  K  Q  G  *  R  *  M  F  N  V  K  R  E  S  W  F  A  *  S  T  F  G  P  *  *  *  S  S  *  R  D  C  K  *  S  R  E  R  P  R  D  K  Y  S  *  R  C  S  C  *  V  R  *  F  V  K  Y  I  S  *  C  L  F  K  H  *  I  A  *  W  F  K  F  T  S  E  V  S  R  C  R  Y  F  K  D  G  Q  A  L  C  *  *  K  P  N  K  Q  H  W  L  L  *  S  S  S  S  L  S  S  Q  G  F  W  *  *  R :   S  R  *  N  I  V  R  F  G  F  T  Q  *  A  S  T  D  N  R  S  S  *  Q  S  G  C  Y  I  I  A  W  S  K  Q  S  G  *  E  *  P  Y  N  N  W  R  R  C  R  I  F  C  Y  D  Q  K  T  L  F  V  C  K  S  F  I  L  P  W  W  K  F  *  H  I  K  H  C  S  R  *  H  M  A  I  W :   G  W  L  Y  E  A  L  L  A  I  F  L  H  F  E  F  I  *  G  Q  T  Y  A  K  *  I  E  S  T  R  S  S  F  H  F  L  *  R  Y  L  K  T  P  F  P  *  F  S  A  *  L  W  T  V  S  V  I  A  S  P  C  A  N  I  V  L  H  T  S  F  Y  R  L  N  K  A  M  S  L  *  L  S  F  S  R  S  I  I  R  C  M  E  L  S  V  V  K  N  V  L  F  I  N  G  *  D  K  G  I  T  H  *  Q  *  G  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49767" stop="49654"/>
                    <exon start="46846" stop="46640"/>
                    <exon start="46562" stop="46079"/>
                    <exon start="44023" stop="43772"/>
                    <exon start="43564" stop="43443"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1176</number_coding_nucleotides>
                  <number_encoded_amino_acids>392</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVASLSYLLIMYLILGGFVSAENLASSLEKAWLSLHVQDTTTTLLTAALASRKDLVSGASSVTAEVGSSSSAQVSPAQAITHIQSPLATLSKNSQIVEGEDPGHAAMDIDSSLIDMDSHGSADAFESRIGDFNESTTVITTAEKPLDLVEVDSNKGKDECSMSKENPGLRDQHLDPSDEAPREIANKAGKDPEINIVEDAAAESDDSSNIFHDVCLNIRLPDGSSLQVKFLVVDTLRMVKHYVDKNQTSSIGYYDLAVPYPRKVFGDEDLDRTLSDLGLHNRQALIIVLRNKVDVTSLHGLNNPAESNHTTIGGDAGYFATIRKLFSYVNPLSYLGGSSNTSNTARDSIWQYGVGYMKHCWLFFSILNSSKDKLMQSELKALEVLFIFSSVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="54277" e_stop="54161"/>
            <exon e_start="52967" e_stop="52868"/>
            <exon e_start="52441" e_stop="52389"/>
            <exon e_start="52290" e_stop="51726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.086" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.797" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54277" e_stop="54161" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.086">
            <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52967" e_stop="52868" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="52389" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.797">
            <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="52290" e_stop="51726" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54277" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54250" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="51726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTTCGTTTTACCGGTTTTCGGTAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT : ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG : GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA : GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTT</gDNA_template>
            <first_frame> C  F  S  F  Y  R  F  S  V  K  N  R  F  H  P  C  L  K  S  I  H  F  R  V  L  A  Q  N  S  D  *  S  E  *  R  R  N  Q  A  :  M  E  Q  L  L  S  P  L  V  F  N  G  S  T  V  E  A  I  T  E  A  K  Q  K  K  K  L  F  V  V  L  V  S   : G  G  N  M  E  S  N  Q  S  E  T  S  T  W  L  D  P  R  :  V  A  D  S  I  S  K  Y  C  I  L  L  H  I  L  E  G  S  T  D  A  R  N  F  S  A  L  C  I  L  C  L  Y  K  V  S  P  P  L  P  L  E  I  L  Y  S  S  S  N  F  F  C  F  F  T  H  P  S  I  S  A  G  S  F  V  F  F  V  Y  *  L  R  V  F  *  E  G  E  G  S  F  S  S  E  S  P  *  A  W  S  S  C  *  I  S  *  T  R  N  S  R  T  *  F  M  E  I  F  *  L  K  F  C  K  W  S  W  L  K  K  L  Q  A  E  V  T  L  R  C  V  I  Q  K  I  H  L  N  G  S  E  I  K  L  Y  F  G  A  S  V  D  F  I  N  R  Y  N  W  C  K  G  L  P  L  S  N  R  R  T  F  I  I  L  L  A  T  F  Q  G  N  R  V  N  V  N  T  D  W  L  </first_frame>
            <second_frame>  V  F  R  F  T  G  F  R  *  K  T  V  S  T  L  V  *  K  A  F  I  L  E  F  W  L  K  I  P  I  D  R  S  E  G  A  I  K  L :   W  S  N  F  Y  L  L  S  C  S  M  V  L  L  *  K  P  S  L  K  P  S  R  R  R  S  F  L  *  F  L  F  Q  :  V  A  I  W  N  Q  I  N  R  K  H  Q  L  G  L  T  Q  E :   L  L  I  L  Y  L  S  T  A  F  C  C  T  S  *  K  E  V  L  M  P  E  T  S  Q  H  C  V  S  F  A  C  I  K  F  L  P  P  S  P  L  R  Y  S  I  P  R  L  I  S  F  V  S  L  H  I  P  L  S  V  Q  G  V  L  F  S  L  S  I  N  C  A  Y  S  E  R  V  R  D  L  S  L  L  N  H  H  E  L  G  A  H  A  R  Y  H  K  Q  G  I  L  G  P  D  L  W  K  F  S  S  *  N  F  V  N  G  V  G  *  R  N  F  K  Q  R  *  R  L  D  V  L  Y  K  K  F  I  *  M  E  A  K  *  N  Y  I  L  G  Q  V  *  T  L  *  T  D  T  I  G  A  R  V  S  L  C  L  T  E  E  H  S  S  S  C  W  Q  L  S  R  V  T  G  S  M  S  I  L  T  G  F </second_frame>
            <third_frame>   F  F  V  L  P  V  F  G  K  K  P  F  P  P  L  F  E  K  H  S  F  *  S  F  G  S  K  F  R  L  I  G  V  K  A  Q  S  S   : Y  G  A  T  F  I  S  S  R  V  Q  W  F  Y  C  R  S  H  H  *  S  Q  A  E  E  E  A  F  C  S  S  C  F  R :   W  Q  Y  G  I  K  S  I  G  N  I  N  L  A  *  P  K   : S  C  *  F  Y  I  *  V  L  H  F  V  A  H  P  R  R  K  Y  *  C  Q  K  L  L  S  I  V  Y  P  L  P  V  *  S  F  S  P  P  P  P  *  D  T  L  F  L  V  *  F  L  L  F  L  Y  T  S  L  Y  Q  C  R  E  F  C  F  L  C  L  L  I  A  R  I  L  R  G  *  G  I  F  L  F  *  I  T  M  S  L  E  L  M  L  D  I  I  N  K  E  F  *  D  L  I  Y  G  N  F  L  A  E  I  L  *  M  E  L  V  K  E  T  S  S  R  G  D  A  *  M  C  Y  T  K  N  S  S  K  W  K  R  N  K  T  I  F  W  G  K  C  R  L  Y  K  Q  I  Q  L  V  Q  G  S  P  S  V  *  Q  K  N  I  H  H  P  A  G  N  F  P  G  *  P  G  Q  C  Q  Y  *  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54175" stop="54161"/>
                    <exon start="52967" stop="52868"/>
                    <exon start="52441" stop="52389"/>
                    <exon start="52290" stop="52081"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNQAMEQLLSPLVFNGSTVEAITEAKQKKKLFVVLVSGGNMESNQSETSTWLDPRVADSISKYCILLHILEGSTDARNFSALCILCLYKVSPPLPLEILYSSSNFFCFFTHPSISAGSFVFFVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="7" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51963" stop="51727"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKFCKWSWLKKLQAEVTLRCVIQKIHLNGSEIKLYFGASVDFINRYNWCKGLPLSNRRTFIILLATFQGNRVNVNTDWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="55704" PGL_stop="57267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55704" e_stop="56240"/>
            <exon e_start="56321" e_stop="56480"/>
            <exon e_start="56553" e_stop="57267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.886" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55704" e_stop="56240" e_length="537"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56321" e_stop="56480" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.886">
            <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="56553" e_stop="57267" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="56235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="56213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="56166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="55881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55782" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55785" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55789" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55798" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55800" stop="56216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55801" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55803" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55803" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55803" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55804" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55804" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55805" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55805" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55806" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55806" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55809" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55809" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55809" stop="56240"/>
              <exon start="56321" stop="56443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55810" stop="56240"/>
              <exon start="56321" stop="56443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55812" stop="56240"/>
              <exon start="56321" stop="56354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55813" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55813" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55814" stop="56240"/>
              <exon start="56321" stop="56432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55815" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55816" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55818" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55820" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55820" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55823" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55823" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55826" stop="56154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55832" stop="56240"/>
              <exon start="56321" stop="56368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55835" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55838" stop="56240"/>
              <exon start="56321" stop="56333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55844" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55844" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55845" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55845" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55845" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55845" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705808" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56204" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224338" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56214" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="56869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56223" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="57016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56232" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="57140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56232" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="57066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56339" stop="56480"/>
              <exon start="56553" stop="56731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56364" stop="56480"/>
              <exon start="56553" stop="57065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345308" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56370" stop="56480"/>
              <exon start="56553" stop="57119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56375" stop="56480"/>
              <exon start="56553" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56375" stop="56480"/>
              <exon start="56553" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56382" stop="56480"/>
              <exon start="56553" stop="56644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56393" stop="56480"/>
              <exon start="56553" stop="56935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56397" stop="56480"/>
              <exon start="56553" stop="57049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56407" stop="56480"/>
              <exon start="56553" stop="57150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56414" stop="56480"/>
              <exon start="56553" stop="56946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56430" stop="56480"/>
              <exon start="56553" stop="57150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56435" stop="56480"/>
              <exon start="56553" stop="57113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56461" stop="56480"/>
              <exon start="56553" stop="56994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56463" stop="56480"/>
              <exon start="56553" stop="57133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56469" stop="56480"/>
              <exon start="56553" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56478" stop="56480"/>
              <exon start="56553" stop="57142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56578" stop="57115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56578" stop="56961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56611" stop="57160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56626" stop="57131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56627" stop="57127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56642" stop="57267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56705" stop="57156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56729" stop="57117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56739" stop="57113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56741" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56741" stop="57159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56745" stop="57167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56745" stop="57164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56745" stop="57101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56773" stop="57142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56815" stop="57113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56818" stop="57142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56986" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT : GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG : GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAGGCAAACATCTCTGTTACCCATACTTTGATACGGAGCTATCATTGTTTTGCCGAAAATAACATAATTATAAAGCCTATTTCTGAAGAAATCAATC</gDNA_template>
            <first_frame> *  S  L  P  S  I  H  T  S  Q  T  I  S  T  V  S  S  Y  L  L  K  K  I  L  H  L  T  L  A  S  F  V  P  K  K  I  H  S  L  F  Y  S  I  H  F  L  L  R  K  *  R  *  G  *  L  *  F  C  F  C  W  *  S  L  G  V  L  F  M  E  M  R  M  S  H  S  G  S  N  P  H  *  *  R  R  *  R  V  P  R  C  V  *  R  I  G  S  A  T  N  C  L  N  F  V  V  I  *  Q  L  L  I  I  W  M  L  T  N  L  S  S  F  S  L  R  G  T  H  P  *  L  M  L  L  D  S  G  I  M  D  L  S  L  G  L  Q  H  F  T  S  L  L  D  L  V  P  P  V  V  R  K  C  R  *  R  R  L  L  L  F  L  D  M  S  V  A  K  L  L  :  V  V  M  V  S  P  L  A  D  H  S  L  M  V  Y  A  I  T  K  K  *  V  P  A  K  I  T  V  M  N  T  S  N  *  P  T  H  A  L  L  E  P  D  I  T  V  V  V  P  C  L  S  T   : G  T  T  I  M  E  L  L  V  K  P  S  S  L  I  S  W  I  I  L  N  T  L  N  K  M  L  P  W  L  S  R  L  P  F  G  G  G  *  T  Q  *  R  R  V  S  L  Q  L  M  M  P  L  W  A  T  G  S  P  Q  R  M  I  L  C  L  N  E  F  L  V  S  V  P  P  *  I  F  S  M  V  M  V  F  V  A  K  V  M  L  T  Q  *  T  T  S  S  P  I  T  S  T  T  L  T  *  W  G  L  V  A  R  K  Q  D  L  T  K  Y  S  T  A  P  N  K  N  L  L  T  Q  P  L  L  L  L  L  E  I  I  L  L  *  P  R  P  Y  N  K  R  W  E  S  *  L  P  F  *  L  F  Y  H  V  I  F  L  D  L  H  F  F  F  F  M  F  M  V  *  F  I  N  I  Y  I  Y  V  M  *  S  F  Y  V  V  I  C  K  T  A  I  L  L  S  C  C  I  S  S  P  G  K  H  L  C  Y  P  Y  F  D  T  E  L  S  L  F  C  R  K  *  H  N  Y  K  A  Y  F  *  R  N  Q   </first_frame>
            <second_frame>  N  L  Y  R  P  F  T  H  H  K  Q  S  P  P  *  A  H  I  Y  *  K  R  Y  S  I  *  L  L  L  L  L  Y  Q  R  K  F  I  L  S  S  I  L  F  T  F  Y  *  E  N  E  D  E  D  D  Y  D  F  V  S  V  G  N  H  W  G  F  C  S  W  R  *  E  *  V  I  Q  E  A  T  H  T  S  E  D  G  E  G  Y  Q  D  V  C  E  G  L  G  V  Q  Q  I  V  *  I  L  L  *  F  D  N  Y  *  L  S  G  C  *  P  I  *  A  P  F  H  *  E  E  L  T  R  S  S  C  C  W  I  L  G  L  W  I  F  H  *  G  C  S  T  L  P  A  S  W  I  W  Y  H  R  W  *  E  N  A  D  E  G  D  C  C  F  F  W  T  C  R  *  Q  N  F  L :   W  L  W  C  R  H  W  R  T  T  R  L  W  S  M  L  *  Q  R  N  E  S  Q  P  R  L  L  *  *  I  L  Q  I  N  L  P  M  H  S  W  S  Q  I  L  R  S  W  C  L  A  Y  L  L  :  E  L  Q  L  W  S  Y  W  *  S  P  Q  A  *  S  L  G  S  S  *  I  H  *  T  K  C  Y  H  G  F  P  G  C  H  L  E  V  D  E  P  N  E  E  G  S  A  F  S  S  *  C  L  C  G  Q  L  E  A  H  K  E  *  Y  F  V  *  T  S  S  W  F  R  Y  H  H  E  Y  S  L  W  *  W  C  L  W  P  R  *  C  *  R  N  E  Q  H  R  L  P  L  P  L  L  P  *  L  D  G  G  W  S  R  G  S  R  T  S  R  S  T  Q  L  R  R  T  K  T  F  *  P  N  R  C  C  C  F  L  R  S  S  Y  F  S  P  A  H  T  I  N  V  G  N  H  N  C  H  S  S  C  S  I  M  *  Y  F  W  T  C  I  F  F  F  L  C  S  W  F  D  L  *  I  Y  I  Y  M  *  C  E  A  S  M  L  *  F  V  K  L  Q  F  Y  C  P  V  A  F  H  P  Q  A  N  I  S  V  T  H  T  L  I  R  S  Y  H  C  F  A  E  N  N  I  I  I  K  P  I  S  E  E  I  N  </second_frame>
            <third_frame>   I  S  T  V  H  S  H  I  T  N  N  L  H  R  K  L  I  F  I  E  K  D  T  P  S  N  S  C  F  F  C  T  K  E  N  S  F  S  L  L  F  Y  S  L  S  T  K  K  M  K  M  R  M  I  M  I  L  F  L  L  V  I  I  G  G  F  V  H  G  D  E  N  E  S  F  R  K  Q  P  T  L  V  K  T  V  K  G  T  K  M  C  V  K  D  W  E  C  N  K  L  S  K  F  C  C  N  L  T  I  T  D  Y  L  D  V  D  Q  F  E  L  L  F  T  K  R  N  S  P  V  A  H  A  V  G  F  W  D  Y  G  S  F  I  R  A  A  A  L  Y  Q  P  L  G  F  G  T  T  G  G  K  K  M  Q  M  K  E  I  A  A  F  F  G  H  V  G  S  K  T  S   : C  G  Y  G  V  A  T  G  G  P  L  A  Y  G  L  C  Y  N  K  E  M  S  P  S  Q  D  Y  C  D  E  Y  F  K  L  T  Y  P  C  T  P  G  A  R  Y  Y  G  R  G  A  L  P  I  Y  W :   N  Y  N  Y  G  A  I  G  E  A  L  K  L  N  L  L  D  H  P  E  Y  I  E  Q  N  A  T  M  A  F  Q  A  A  I  W  R  W  M  N  P  M  K  K  G  Q  P  S  A  H  D  A  F  V  G  N  W  K  P  T  K  N  D  T  L  S  K  R  V  P  G  F  G  T  T  M  N  I  L  Y  G  D  G  V  C  G  Q  G  D  V  D  A  M  N  N  I  V  S  H  Y  L  Y  Y  L  D  L  M  G  V  G  R  E  E  A  G  P  H  E  V  L  N  C  A  E  Q  K  P  F  N  P  T  A  V  A  A  S  *  D  H  P  T  L  A  P  P  I  Q  *  T  L  G  I  I  I  A  I  L  V  V  L  S  C  N  I  F  G  L  A  F  F  F  F  Y  V  H  G  L  I  Y  K  Y  I  Y  I  C  N  V  K  L  L  C  C  N  L  *  N  C  N  S  T  V  L  L  H  F  I  P  R  Q  T  S  L  L  P  I  L  *  Y  G  A  I  I  V  L  P  K  I  T  *  L  *  S  L  F  L  K  K  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55706" stop="56240"/>
                    <exon start="56321" stop="56480"/>
                    <exon start="56553" stop="56961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISTVHSHITNNLHRKLIFIEKDTPSNSCFFCTKENSFSLLFYSLSTKKMKMRMIMILFLLVIIGGFVHGDENESFRKQPTLVKTVKGTKMCVKDWECNKLSKFCCNLTITDYLDVDQFELLFTKRNSPVAHAVGFWDYGSFIRAAALYQPLGFGTTGGKKMQMKEIAAFFGHVGSKTSCGYGVATGGPLAYGLCYNKEMSPSQDYCDEYFKLTYPCTPGARYYGRGALPIYWNYNYGAIGEALKLNLLDHPEYIEQNATMAFQAAIWRWMNPMKKGQPSAHDAFVGNWKPTKNDTLSKRVPGFGTTMNILYGDGVCGQGDVDAMNNIVSHYLYYLDLMGVGREEAGPHEVLNCAEQKPFNPTAVAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="55704" e_stop="56240"/>
            <exon e_start="56351" e_stop="56480"/>
            <exon e_start="56553" e_stop="57267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.886" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55704" e_stop="56240" e_length="537"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56241" i_stop="56350" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56351" e_stop="56480" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.886">
            <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="56553" e_stop="57267" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="56235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="56213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="56166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="55881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55800" stop="56216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55826" stop="56154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55846" stop="56215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55870" stop="56235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55922" stop="56220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56100" stop="56240"/>
              <exon start="56351" stop="56480"/>
              <exon start="56553" stop="57104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56364" stop="56480"/>
              <exon start="56553" stop="57065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345308" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56370" stop="56480"/>
              <exon start="56553" stop="57119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56375" stop="56480"/>
              <exon start="56553" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56375" stop="56480"/>
              <exon start="56553" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56382" stop="56480"/>
              <exon start="56553" stop="56644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56393" stop="56480"/>
              <exon start="56553" stop="56935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56397" stop="56480"/>
              <exon start="56553" stop="57049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56407" stop="56480"/>
              <exon start="56553" stop="57150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56414" stop="56480"/>
              <exon start="56553" stop="56946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56430" stop="56480"/>
              <exon start="56553" stop="57150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56435" stop="56480"/>
              <exon start="56553" stop="57113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56461" stop="56480"/>
              <exon start="56553" stop="56994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56463" stop="56480"/>
              <exon start="56553" stop="57133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56469" stop="56480"/>
              <exon start="56553" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56478" stop="56480"/>
              <exon start="56553" stop="57142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56578" stop="57115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56578" stop="56961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56611" stop="57160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56626" stop="57131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56627" stop="57127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56642" stop="57267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56705" stop="57156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56729" stop="57117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56739" stop="57113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56741" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56741" stop="57159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56745" stop="57167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56745" stop="57164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56745" stop="57101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56773" stop="57142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56815" stop="57113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56818" stop="57142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56986" stop="57173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342678" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT : TCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG : GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAGGCAAACATCTCTGTTACCCATACTTTGATACGGAGCTATCATTGTTTTGCCGAAAATAACATAATTATAAAGCCTATTTCTGAAGAAATCAATC</gDNA_template>
            <first_frame> *  S  L  P  S  I  H  T  S  Q  T  I  S  T  V  S  S  Y  L  L  K  K  I  L  H  L  T  L  A  S  F  V  P  K  K  I  H  S  L  F  Y  S  I  H  F  L  L  R  K  *  R  *  G  *  L  *  F  C  F  C  W  *  S  L  G  V  L  F  M  E  M  R  M  S  H  S  G  S  N  P  H  *  *  R  R  *  R  V  P  R  C  V  *  R  I  G  S  A  T  N  C  L  N  F  V  V  I  *  Q  L  L  I  I  W  M  L  T  N  L  S  S  F  S  L  R  G  T  H  P  *  L  M  L  L  D  S  G  I  M  D  L  S  L  G  L  Q  H  F  T  S  L  L  D  L  V  P  P  V  V  R  K  C  R  *  R  R  L  L  L  F  L  D  M  S  V  A  K  L  L  :  S  L  M  V  Y  A  I  T  K  K  *  V  P  A  K  I  T  V  M  N  T  S  N  *  P  T  H  A  L  L  E  P  D  I  T  V  V  V  P  C  L  S  T   : G  T  T  I  M  E  L  L  V  K  P  S  S  L  I  S  W  I  I  L  N  T  L  N  K  M  L  P  W  L  S  R  L  P  F  G  G  G  *  T  Q  *  R  R  V  S  L  Q  L  M  M  P  L  W  A  T  G  S  P  Q  R  M  I  L  C  L  N  E  F  L  V  S  V  P  P  *  I  F  S  M  V  M  V  F  V  A  K  V  M  L  T  Q  *  T  T  S  S  P  I  T  S  T  T  L  T  *  W  G  L  V  A  R  K  Q  D  L  T  K  Y  S  T  A  P  N  K  N  L  L  T  Q  P  L  L  L  L  L  E  I  I  L  L  *  P  R  P  Y  N  K  R  W  E  S  *  L  P  F  *  L  F  Y  H  V  I  F  L  D  L  H  F  F  F  F  M  F  M  V  *  F  I  N  I  Y  I  Y  V  M  *  S  F  Y  V  V  I  C  K  T  A  I  L  L  S  C  C  I  S  S  P  G  K  H  L  C  Y  P  Y  F  D  T  E  L  S  L  F  C  R  K  *  H  N  Y  K  A  Y  F  *  R  N  Q   </first_frame>
            <second_frame>  N  L  Y  R  P  F  T  H  H  K  Q  S  P  P  *  A  H  I  Y  *  K  R  Y  S  I  *  L  L  L  L  L  Y  Q  R  K  F  I  L  S  S  I  L  F  T  F  Y  *  E  N  E  D  E  D  D  Y  D  F  V  S  V  G  N  H  W  G  F  C  S  W  R  *  E  *  V  I  Q  E  A  T  H  T  S  E  D  G  E  G  Y  Q  D  V  C  E  G  L  G  V  Q  Q  I  V  *  I  L  L  *  F  D  N  Y  *  L  S  G  C  *  P  I  *  A  P  F  H  *  E  E  L  T  R  S  S  C  C  W  I  L  G  L  W  I  F  H  *  G  C  S  T  L  P  A  S  W  I  W  Y  H  R  W  *  E  N  A  D  E  G  D  C  C  F  F  W  T  C  R  *  Q  N  F  F :   R  L  W  S  M  L  *  Q  R  N  E  S  Q  P  R  L  L  *  *  I  L  Q  I  N  L  P  M  H  S  W  S  Q  I  L  R  S  W  C  L  A  Y  L  L  :  E  L  Q  L  W  S  Y  W  *  S  P  Q  A  *  S  L  G  S  S  *  I  H  *  T  K  C  Y  H  G  F  P  G  C  H  L  E  V  D  E  P  N  E  E  G  S  A  F  S  S  *  C  L  C  G  Q  L  E  A  H  K  E  *  Y  F  V  *  T  S  S  W  F  R  Y  H  H  E  Y  S  L  W  *  W  C  L  W  P  R  *  C  *  R  N  E  Q  H  R  L  P  L  P  L  L  P  *  L  D  G  G  W  S  R  G  S  R  T  S  R  S  T  Q  L  R  R  T  K  T  F  *  P  N  R  C  C  C  F  L  R  S  S  Y  F  S  P  A  H  T  I  N  V  G  N  H  N  C  H  S  S  C  S  I  M  *  Y  F  W  T  C  I  F  F  F  L  C  S  W  F  D  L  *  I  Y  I  Y  M  *  C  E  A  S  M  L  *  F  V  K  L  Q  F  Y  C  P  V  A  F  H  P  Q  A  N  I  S  V  T  H  T  L  I  R  S  Y  H  C  F  A  E  N  N  I  I  I  K  P  I  S  E  E  I  N  </second_frame>
            <third_frame>   I  S  T  V  H  S  H  I  T  N  N  L  H  R  K  L  I  F  I  E  K  D  T  P  S  N  S  C  F  F  C  T  K  E  N  S  F  S  L  L  F  Y  S  L  S  T  K  K  M  K  M  R  M  I  M  I  L  F  L  L  V  I  I  G  G  F  V  H  G  D  E  N  E  S  F  R  K  Q  P  T  L  V  K  T  V  K  G  T  K  M  C  V  K  D  W  E  C  N  K  L  S  K  F  C  C  N  L  T  I  T  D  Y  L  D  V  D  Q  F  E  L  L  F  T  K  R  N  S  P  V  A  H  A  V  G  F  W  D  Y  G  S  F  I  R  A  A  A  L  Y  Q  P  L  G  F  G  T  T  G  G  K  K  M  Q  M  K  E  I  A  A  F  F  G  H  V  G  S  K  T  S   : F  A  Y  G  L  C  Y  N  K  E  M  S  P  S  Q  D  Y  C  D  E  Y  F  K  L  T  Y  P  C  T  P  G  A  R  Y  Y  G  R  G  A  L  P  I  Y  W :   N  Y  N  Y  G  A  I  G  E  A  L  K  L  N  L  L  D  H  P  E  Y  I  E  Q  N  A  T  M  A  F  Q  A  A  I  W  R  W  M  N  P  M  K  K  G  Q  P  S  A  H  D  A  F  V  G  N  W  K  P  T  K  N  D  T  L  S  K  R  V  P  G  F  G  T  T  M  N  I  L  Y  G  D  G  V  C  G  Q  G  D  V  D  A  M  N  N  I  V  S  H  Y  L  Y  Y  L  D  L  M  G  V  G  R  E  E  A  G  P  H  E  V  L  N  C  A  E  Q  K  P  F  N  P  T  A  V  A  A  S  *  D  H  P  T  L  A  P  P  I  Q  *  T  L  G  I  I  I  A  I  L  V  V  L  S  C  N  I  F  G  L  A  F  F  F  F  Y  V  H  G  L  I  Y  K  Y  I  Y  I  C  N  V  K  L  L  C  C  N  L  *  N  C  N  S  T  V  L  L  H  F  I  P  R  Q  T  S  L  L  P  I  L  *  Y  G  A  I  I  V  L  P  K  I  T  *  L  *  S  L  F  L  K  K  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55706" stop="56240"/>
                    <exon start="56351" stop="56480"/>
                    <exon start="56553" stop="56961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISTVHSHITNNLHRKLIFIEKDTPSNSCFFCTKENSFSLLFYSLSTKKMKMRMIMILFLLVIIGGFVHGDENESFRKQPTLVKTVKGTKMCVKDWECNKLSKFCCNLTITDYLDVDQFELLFTKRNSPVAHAVGFWDYGSFIRAAALYQPLGFGTTGGKKMQMKEIAAFFGHVGSKTSFAYGLCYNKEMSPSQDYCDEYFKLTYPCTPGARYYGRGALPIYWNYNYGAIGEALKLNLLDHPEYIEQNATMAFQAAIWRWMNPMKKGQPSAHDAFVGNWKPTKNDTLSKRVPGFGTTMNILYGDGVCGQGDVDAMNNIVSHYLYYLDLMGVGREEAGPHEVLNCAEQKPFNPTAVAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="57117" PGL_stop="56562"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57117" e_stop="56562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="57117" e_stop="56562" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57117" stop="56562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57103" stop="56724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTCACATTACATATATATATATATTTATAAATCAAACCATGAACATAAAAAAAAAAAAATGCAAGTCCAAAAATATTACATGATAGAACAACTAGAATGGCAATTATGATTCCCAACGTTTATTGTATGGGCGGGGCTAAAGTAGGATGATCTCAAGAAGCAGCAACAGCGGTTGGGTTAAAAGGTTTTTGTTCGGCGCAGTTGAGTACTTCGTGAGGTCCTGCTTCCTCGCGACCAACCCCCATCAAGTCAAGGTAGTAGAGGTAATGGGAGACGATGTTGTTCATTGCGTCAACATCACCTTGGCCACAAACACCATCACCATAGAGAATATTCATGGTGGTACCGAAACCAGGAACTCGTTTAGACAAAGTATCATTCTTTGTGGGCTTCCAGTTGCCCACAAAGGCATCATGAGCTGAAGGCTGACCCTTCTTCATTGGGTTCATCCACCTCCAAATGGCAGCCTGGAAAGCCATGGTAGCATTTTGTTCAATGTATTCAGGATGATCCAAGAGATTAAGCTTGAGGGCTTCACCAATAGCTCCATAA</gDNA_template>
            <first_frame> K  L  H  I  T  Y  I  Y  I  F  I  N  Q  T  M  N  I  K  K  K  K  C  K  S  K  N  I  T  *  *  N  N  *  N  G  N  Y  D  S  Q  R  L  L  Y  G  R  G  *  S  R  M  I  S  R  S  S  N  S  G  W  V  K  R  F  L  F  G  A  V  E  Y  F  V  R  S  C  F  L  A  T  N  P  H  Q  V  K  V  V  E  V  M  G  D  D  V  V  H  C  V  N  I  T  L  A  T  N  T  I  T  I  E  N  I  H  G  G  T  E  T  R  N  S  F  R  Q  S  I  I  L  C  G  L  P  V  A  H  K  G  I  M  S  *  R  L  T  L  L  H  W  V  H  P  P  P  N  G  S  L  E  S  H  G  S  I  L  F  N  V  F  R  M  I  Q  E  I  K  L  E  G  F  T  N  S  S  I  </first_frame>
            <second_frame>  S  F  T  L  H  I  Y  I  Y  L  *  I  K  P  *  T  *  K  K  K  N  A  S  P  K  I  L  H  D  R  T  T  R  M  A  I  M  I  P  N  V  Y  C  M  G  G  A  K  V  G  *  S  Q  E  A  A  T  A  V  G  L  K  G  F  C  S  A  Q  L  S  T  S  *  G  P  A  S  S  R  P  T  P  I  K  S  R  *  *  R  *  W  E  T  M  L  F  I  A  S  T  S  P  W  P  Q  T  P  S  P  *  R  I  F  M  V  V  P  K  P  G  T  R  L  D  K  V  S  F  F  V  G  F  Q  L  P  T  K  A  S  *  A  E  G  *  P  F  F  I  G  F  I  H  L  Q  M  A  A  W  K  A  M  V  A  F  C  S  M  Y  S  G  *  S  K  R  L  S  L  R  A  S  P  I  A  P  * </second_frame>
            <third_frame>   A  S  H  Y  I  Y  I  Y  I  Y  K  S  N  H  E  H  K  K  K  K  M  Q  V  Q  K  Y  Y  M  I  E  Q  L  E  W  Q  L  *  F  P  T  F  I  V  W  A  G  L  K  *  D  D  L  K  K  Q  Q  Q  R  L  G  *  K  V  F  V  R  R  S  *  V  L  R  E  V  L  L  P  R  D  Q  P  P  S  S  Q  G  S  R  G  N  G  R  R  C  C  S  L  R  Q  H  H  L  G  H  K  H  H  H  H  R  E  Y  S  W  W  Y  R  N  Q  E  L  V  *  T  K  Y  H  S  L  W  A  S  S  C  P  Q  R  H  H  E  L  K  A  D  P  S  S  L  G  S  S  T  S  K  W  Q  P  G  K  P  W  *  H  F  V  Q  C  I  Q  D  D  P  R  D  *  A  *  G  L  H  Q  *  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56973" stop="56692"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRMISRSSNSGWVKRFLFGAVEYFVRSCFLATNPHQVKVVEVMGDDVVHCVNITLATNTITIENIHGGTETRNSFRQSIILCGLPVAHKGIMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="63415" PGL_stop="57405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63415" e_stop="62635"/>
            <exon e_start="62456" e_stop="62401"/>
            <exon e_start="61881" e_stop="61772"/>
            <exon e_start="61680" e_stop="61521"/>
            <exon e_start="58978" e_stop="58886"/>
            <exon e_start="58575" e_stop="58444"/>
            <exon e_start="57743" e_stop="57405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63415" e_stop="62635" e_length="781"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="62634" i_stop="62457" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62456" e_stop="62401" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.976">
            <gDNA_intron_boundary i_start="62400" i_stop="61882" i_length="519"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61881" e_stop="61772" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="61771" i_stop="61681" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61680" e_stop="61521" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61520" i_stop="58979" i_length="2542"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58978" e_stop="58886" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58885" i_stop="58576" i_length="310"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58575" e_stop="58444" e_length="132"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58443" i_stop="57744" i_length="700"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57743" e_stop="57405" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63415" stop="62692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63406" stop="63115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63403" stop="62923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63402" stop="62913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63400" stop="62673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63400" stop="62810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63400" stop="62907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63202" stop="62635"/>
              <exon start="62456" stop="62401"/>
              <exon start="61881" stop="61772"/>
              <exon start="61680" stop="61597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62834" stop="62635"/>
              <exon start="62456" stop="62401"/>
              <exon start="61881" stop="61772"/>
              <exon start="61680" stop="61521"/>
              <exon start="58978" stop="58903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62662" stop="62635"/>
              <exon start="62456" stop="62401"/>
              <exon start="61881" stop="61772"/>
              <exon start="61680" stop="61521"/>
              <exon start="58978" stop="58886"/>
              <exon start="58575" stop="58444"/>
              <exon start="57743" stop="57474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62662" stop="62635"/>
              <exon start="62456" stop="62401"/>
              <exon start="61881" stop="61772"/>
              <exon start="61680" stop="61521"/>
              <exon start="58978" stop="58886"/>
              <exon start="58575" stop="58444"/>
              <exon start="57743" stop="57492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61674" stop="61521"/>
              <exon start="58978" stop="58886"/>
              <exon start="58575" stop="58444"/>
              <exon start="57743" stop="57405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58972" stop="58886"/>
              <exon start="58575" stop="58444"/>
              <exon start="57743" stop="57524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGCCATGAACCTCTCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGATGAAGGAAATAGTAATTGGGATTTGGATACTCCAATTAGCTTTTCCAGGAGGCGAAAGAAGAAGAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATCAAGTTGGGACAGAGAATCAAGAAGAGTATCAGAGAATGGCCGATAGATTGATTCGAG : CCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAA : TTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAG : CACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGG : GCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCG : CCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTG : ATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGACATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAGGTCCAATGCACATCCTTCTTTGTTCTCTTAATTTCATCAGCATAGCTATGAAGTTGAACTTCTTTAGTAGTGATCTCAAAACAATGAAGCTTACATGCTGAGACCAGATATCTATACAT</gDNA_template>
            <first_frame> N  A  M  N  L  S  L  Y  T  I  S  L  S  P  S  N  S  I  R  F  T  S  P  K  R  C  C  H  Y  H  V  I  S  R  R  V  S  P  S  P  Y  R  R  R  H  L  R  R  R  R  F  P  F  L  K  K  F  S  P  E  D  T  P  P  S  D  Q  N  L  H  F  V  L  T  V  D  N  L  P  T  K  S  F  Y  S  I  K  D  L  I  H  L  K  L  R  E  F  L  H  S  G  R  A  A  I  E  D  L  Q  T  L  I  R  I  D  T  D  A  G  R  V  S  F  S  C  T  R  S  T  V  K  F  L  A  T  L  L  V  S  T  F  L  L  I  F  T  L  R  A  I  L  N  L  V  R  R  I  P  L  N  T  G  N  N  N  V  E  L  V  Y  K  R  D  R  S  L  G  G  R  E  V  L  V  A  K  N  E  T  P  T  L  D  R  K  K  P  N  V  L  D  R  D  E  G  N  S  N  W  D  L  D  T  P  I  S  F  S  R  R  R  K  K  K  S  S  V  E  Q  L  P  K  W  W  P  V  S  T  S  G  S  D  Q  V  G  T  E  N  Q  E  E  Y  Q  R  M  A  D  R  L  I  R   : A  I  L  D  N  R  M  T  G  K  D  I  L  A  D  D  I  I  Q  :  L  R  R  I  G  R  I  S  N  V  K  V  S  F  D  T  E  N  A  R  D  T  L  F  R  V  A  V  D  F  I  L  N  Y  C  E  S :   T  A  S  Q  S  A  F  V  L  I  D  G  E  E  A  Q  N  F  V  A  G  L  A  D  N  V  G  L  E  S  T  R  A  A  R  M  V  S  A  A  V  A  A  R  T  R  S  R  F  L  Q  A  W  :  A  L  E  I  Q  G  K  H  S  E  A  V  V  E  L  F  K  I  C  V  I  H  Q  I  F  P  P  E  E  F  S  :  P  E  M  E  M  V  A  R  G  L  E  K  H  L  K  V  D  Q  R  E  S  L  M  N  S  L  L  Q  V  C  G  D  E  T  R  R  S  V  A  E  A  L  G  L  :  M  Y  M  K  S  N  I  A  H  Q  Q  E  N  K  Y  T  *  I  T  N  L  C  V  Q  E  L  I  F  K  D  E  *  C  F  M  L  K  K  T  L  V  Y  K  *  Y  C  L  Y  A  I  T  L  R  N  A  S  S  G  L  L  D  V  S  C  K  R  *  C  Y  L  L  E  E  G  P  M  H  I  L  L  C  S  L  N  F  I  S  I  A  M  K  L  N  F  F  S  S  D  L  K  T  M  K  L  T  C  *  D  Q  I  S  I  H </first_frame>
            <second_frame>  M  P  *  T  S  L  S  I  P  S  L  S  H  L  P  I  P  S  A  S  L  L  Q  N  D  V  V  T  T  T  S  F  L  A  E  S  P  P  P  L  T  V  D  A  I  S  A  A  A  A  S  P  F  L  K  S  S  P  R  K  T  L  H  R  P  I  K  T  S  T  L  S  L  P  S  I  I  C  L  P  N  P  S  T  Q  S  R  T  S  S  T  *  S  S  E  N  S  S  T  Q  A  E  L  P  L  K  T  C  K  L  S  S  V  *  I  P  T  P  G  E  F  P  S  P  A  Q  G  P  P  L  N  S  *  Q  L  Y  *  F  Q  L  S  Y  L  F  S  L  L  G  L  F  L  T  *  F  G  G  Y  H  S  T  L  E  T  T  T  L  N  *  S  I  R  E  T  V  V  *  V  E  E  K  Y  L  L  L  K  M  R  R  L  R  L  I  G  R  N  Q  M  S  W  I  E  M  K  E  I  V  I  G  I  W  I  L  Q  L  A  F  P  G  G  E  R  R  R  V  L  W  S  N  C  L  N  G  G  L  F  R  L  L  V  P  I  K  L  G  Q  R  I  K  K  S  I  R  E  W  P  I  D  *  F  E  :  P  S  W  T  I  E  *  R  G  R  T  F  *  R  M  I  *  F  N :   Y  D  A  *  G  G  Y  Q  T  *  K  F  H  L  I  L  R  M  H  V  I  P  F  F  A  W  Q  S  T  L  F  L  I  I  V  K   : A  L  Q  V  S  Q  L  L  F  *  L  M  V  K  K  H  K  T  L  L  L  G  L  L  I  M  L  D  L  R  V  L  G  L  Q  E  W  C  L  Q  L  L  L  H  A  L  G  Q  G  S  C  K  L  G :   P  W  K  Y  R  E  S  I  L  K  L  W  W  N  C  S  K  Y  V  S  S  T  R  Y  F  L  L  K  S  S  R :   L  R  W  R  W  W  L  V  D  L  R  N  T  *  K  *  T  K  G  S  P  *  *  T  V  F  Y  K  C  V  V  M  R  P  G  E  V  W  L  K  L  W  V  * :   C  T  *  R  V  T  L  L  I  N  K  K  T  S  I  H  R  S  L  I  Y  A  Y  R  N  *  F  L  K  M  N  N  V  L  C  S  K  R  H  W  C  T  S  S  T  A  C  M  Q  *  P  Y  E  M  L  Q  V  D  Y  W  M  Y  H  V  K  G  N  V  I  C  *  K  K  V  Q  C  T  S  F  F  V  L  L  I  S  S  A  *  L  *  S  *  T  S  L  V  V  I  S  K  Q  *  S  L  H  A  E  T  R  Y  L  Y   </second_frame>
            <third_frame>   C  H  E  P  L  S  L  Y  H  L  S  L  T  F  Q  F  H  P  L  H  F  S  K  T  M  L  S  L  P  R  H  F  S  P  S  L  P  L  P  L  P  S  T  P  S  P  P  P  P  L  P  L  S  *  K  V  L  P  G  R  H  S  T  V  R  S  K  P  P  L  C  P  Y  R  R  *  F  A  Y  Q  I  L  L  L  N  Q  G  P  H  P  L  E  A  P  R  I  P  P  L  R  P  S  C  H  *  R  L  A  N  S  H  P  Y  R  Y  R  R  R  E  S  F  L  L  L  H  K  V  H  R  *  I  P  S  N  S  T  S  F  N  F  P  T  Y  F  H  S  *  G  Y  S  *  P  S  S  A  D  T  T  Q  H  W  K  Q  Q  R  *  I  S  L  *  E  R  P  *  F  R  W  K  R  S  T  C  C  *  K  *  D  A  Y  A  *  *  E  E  T  K  C  L  G  *  R  *  R  K  *  *  L  G  F  G  Y  S  N  *  L  F  Q  E  A  K  E  E  E  F  C  G  A  I  A  *  M  V  A  C  F  D  F  W  F  R  S  S  W  D  R  E  S  R  R  V  S  E  N  G  R  *  I  D  S  S :   H  L  G  Q  *  N  D  G  E  G  H  F  S  G  *  Y  N  S   : I  T  T  H  R  E  D  I  K  R  E  S  F  I  *  Y  *  E  C  T  *  Y  P  F  S  R  G  S  R  L  Y  S  *  L  L  *  K  :  H  C  K  S  V  S  F  C  S  N  *  W  *  R  S  T  K  L  C  C  W  A  C  *  *  C  W  T  *  E  Y  S  G  C  K  N  G  V  C  S  C  C  C  T  H  *  V  K  V  L  A  S  L   : G  L  G  N  T  G  K  A  F  *  S  C  G  G  T  V  Q  N  M  C  H  P  P  D  I  S  S  *  R  V  L   : A  *  D  G  D  G  G  S  W  T  *  E  T  L  K  S  R  P  K  G  V  P  D  E  Q  S  S  T  S  V  W  *  *  D  Q  E  K  C  G  *  S  F  G  S   : D  V  H  E  E  *  H  C  S  S  T  R  K  Q  V  Y  I  D  H  *  F  M  R  T  G  I  D  F  *  R  *  I  M  F  Y  A  Q  K  D  I  G  V  Q  V  V  L  P  V  C  N  N  L  T  K  C  F  K  W  I  I  G  C  I  M  *  K  V  M  L  S  A  R  R  R  S  N  A  H  P  S  L  F  S  *  F  H  Q  H  S  Y  E  V  E  L  L  *  *  *  S  Q  N  N  E  A  Y  M  L  R  P  D  I  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63415" stop="62635"/>
                    <exon start="62456" stop="62401"/>
                    <exon start="61881" stop="61772"/>
                    <exon start="61680" stop="61521"/>
                    <exon start="58978" stop="58886"/>
                    <exon start="58575" stop="58444"/>
                    <exon start="57743" stop="57693"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAMNLSLYTISLSPSNSIRFTSPKRCCHYHVISRRVSPSPYRRRHLRRRRFPFLKKFSPEDTPPSDQNLHFVLTVDNLPTKSFYSIKDLIHLKLREFLHSGRAAIEDLQTLIRIDTDAGRVSFSCTRSTVKFLATLLVSTFLLIFTLRAILNLVRRIPLNTGNNNVELVYKRDRSLGGREVLVAKNETPTLDRKKPNVLDRDEGNSNWDLDTPISFSRRRKKKSSVEQLPKWWPVSTSGSDQVGTENQEEYQRMADRLIRAILDNRMTGKDILADDIIQLRRIGRISNVKVSFDTENARDTLFRVAVDFILNYCESTASQSAFVLIDGEEAQNFVAGLADNVGLESTRAARMVSAAVAARTRSRFLQAWALEIQGKHSEAVVELFKICVIHQIFPPEEFSPEMEMVARGLEKHLKVDQRESLMNSLLQVCGDETRRSVAEALGLMYMKSNIAHQQENKYT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58512" e_stop="57843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="58512" e_stop="57843" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58512" stop="57843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58512" stop="57912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322603" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAATACAATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTA</gDNA_template>
            <first_frame> L  M  N  S  L  L  Q  V  C  G  D  E  T  R  R  S  V  A  E  A  L  G  L  V  C  L  V  Y  Y  S  P  S  L  S  R  R  S  G  I  C  C  S  L  L  L  C  F  Y  *  V  T  F  Q  S  E  V  A  S  P  V  N  F  A  C  S  C  A  F  *  K  N  F  A  L  Q  L  C  K  I  D  L  N  R  Q  C  G  E  D  R  I  L  S  S  V  L  Y  T  V  L  L  P  F  L  F  V  L  F  K  L  K  S  H  N  R  S  L  L  N  V  S  *  I  L  K  S  I  Q  I  P  P  S  P  L  Q  P  L  G  S  *  L  F  S  N  I  T  T  L  A  V  *  R  S  I  L  L  P  W  M  L  *  N  C  W  I  F  S  L  E  F  V  D  K  S  E  P  S  L  A  R  A  G  T  V  W  T  T  D  A  I  L  I  A  E  V  I  C  Y  C  N  W  S  S  Y  P  L  K  Y  N  M  V  L  L  P  L  W  Y  *  K  *  H  L  F  S  </first_frame>
            <second_frame>  *  *  T  V  F  Y  K  C  V  V  M  R  P  G  E  V  W  L  K  L  W  V  W  Y  A  *  F  I  T  P  L  P  Y  L  E  D  L  E  F  V  V  H  C  C  C  A  S  I  E  *  H  F  N  R  K  W  R  L  L  S  T  S  L  V  L  V  L  S  E  R  I  L  P  F  S  C  V  K  *  I  L  T  D  S  A  E  K  T  E  F  Y  P  Q  S  C  T  L  S  C  S  H  F  Y  L  F  F  S  S  S  S  H  T  T  G  V  C  *  M  F  P  K  S  L  N  Q  Y  R  F  H  L  H  L  S  N  L  W  E  V  N  F  F  L  I  S  L  L  W  Q  C  E  E  V  S  Y  Y  H  G  C  Y  K  I  V  G  F  S  L  *  N  L  *  T  N  L  S  Q  V  *  L  G  Q  G  Q  S  G  L  L  M  Q  Y  L  L  Q  R  L  S  A  I  V  I  G  R  V  I  L  *  N  T  I  W  S  Y  Y  L  C  G  I  K  S  N  I  Y  F  L </second_frame>
            <third_frame>   D  E  Q  S  S  T  S  V  W  *  *  D  Q  E  K  C  G  *  S  F  G  S  G  M  P  S  L  L  L  P  F  P  I  *  K  I  W  N  L  L  F  I  V  V  V  L  L  L  S  D  I  S  I  G  S  G  V  S  C  Q  L  R  L  F  L  C  F  L  K  E  F  C  P  S  A  V  *  N  R  S  *  P  T  V  R  R  R  Q  N  S  I  L  S  L  V  H  C  L  A  P  I  S  I  C  S  F  Q  A  Q  V  T  Q  Q  E  F  V  E  C  F  L  N  P  *  I  N  T  D  S  T  F  T  S  P  T  S  G  K  L  T  F  F  *  Y  H  Y  S  G  S  V  K  K  Y  L  I  T  M  D  V  I  K  L  L  D  F  L  F  R  I  C  R  Q  I  *  A  K  S  S  *  G  R  D  S  L  D  Y  *  C  N  T  Y  C  R  G  Y  L  L  L  *  L  V  E  L  S  F  E  I  Q  Y  G  L  I  T  F  V  V  L  K  V  T  F  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0058A04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="66240" PGL_stop="63504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66240" e_stop="66157"/>
            <exon e_start="65987" e_stop="65854"/>
            <exon e_start="65773" e_stop="65694"/>
            <exon e_start="64720" e_stop="64672"/>
            <exon e_start="64578" e_stop="64515"/>
            <exon e_start="63905" e_stop="63504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.604" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66240" e_stop="66157" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.604" acc_prob="0.989">
            <gDNA_intron_boundary i_start="66156" i_stop="65988" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65987" e_stop="65854" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65853" i_stop="65774" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65773" e_stop="65694" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65693" i_stop="64721" i_length="973"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64720" e_stop="64672" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64671" i_stop="64579" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64578" e_stop="64515" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64514" i_stop="63906" i_length="609"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63905" e_stop="63504" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66240" stop="66157"/>
              <exon start="65987" stop="65854"/>
              <exon start="65773" stop="65694"/>
              <exon start="64720" stop="64672"/>
              <exon start="64578" stop="64515"/>
              <exon start="63905" stop="63844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65913" stop="65854"/>
              <exon start="65773" stop="65694"/>
              <exon start="64720" stop="64672"/>
              <exon start="64578" stop="64515"/>
              <exon start="63905" stop="63504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65913" stop="65854"/>
              <exon start="65773" stop="65694"/>
              <exon start="64720" stop="64672"/>
              <exon start="64578" stop="64515"/>
              <exon start="63905" stop="63677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65913" stop="65854"/>
              <exon start="65773" stop="65694"/>
              <exon start="64720" stop="64672"/>
              <exon start="64578" stop="64515"/>
              <exon start="63905" stop="63720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236356" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGGCATTCGAAGGCAACCATGCTTCTAATTGTTAACAATGCAGCGCAAGGAATTCTGTCGTCCTTTTTTTTCAAATATGCTG : ATACAATTCTGAAGAAGTATTCTTCGACCGTTGCAACAATATTTACAGGCATAGCATCTGCTCTGCTGTTTGGTCATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAG : TTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAG : CCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAG : GCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACT : GTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATGGAGAAGAAACAGTGTTGTTGTAGTCTCTCTTTTCTTCTCTCTCCAAAATGTGCTTCATGGGATTGTTTCGCTTGGAGAGAAGGATATGTGGATGGAGAGGTTTTAGGTAGACAACAACAATAGAGTTGTTATGCAATACGAATACGAGCTGTTGTATTATAAGTTACAAACACATGAATTTTATTGTAAACAATTTAGAGTTATCAATTCTTTCATATATTCTTGTAATCAATTGAATTTTGATGATACACCCGTGGATGTGTTAGATTAAACATTTCTTTTTGTAATTTCAAGCAAATTGTACTTGAATGGTAATTCATTTCATATATCTTCTTCTTTATTC</gDNA_template>
            <first_frame> R  G  I  R  R  Q  P  C  F  *  L  L  T  M  Q  R  K  E  F  C  R  P  F  F  S  N  M  L  :  I  Q  F  *  R  S  I  L  R  P  L  Q  Q  Y  L  Q  A  *  H  L  L  C  C  L  V  I  H  *  P  *  T  F  F  L  G  F  L  L  F  S  F  Q  C  I  S :   S  F  H  L  F  Q  K  L  K  M  I  N  K  T  G  Q  W  S  *  L  T  S  G  R  T  I   : A  L  K  I  H  P  L  *  I  W  Q  Q  E  Q  M  R  R :   Q  V  I  E  *  D  L  M  K  G  S  H  F  F  Q  D  E  A  T  *  T  :  V  I  C  S  S  R  Y  C  G  G  E  H  L  Q  S  F  S  V  I  W  R  R  N  S  V  V  V  V  S  L  F  F  S  L  Q  N  V  L  H  G  I  V  S  L  G  E  K  D  M  W  M  E  R  F  *  V  D  N  N  N  R  V  V  M  Q  Y  E  Y  E  L  L  Y  Y  K  L  Q  T  H  E  F  Y  C  K  Q  F  R  V  I  N  S  F  I  Y  S  C  N  Q  L  N  F  D  D  T  P  V  D  V  L  D  *  T  F  L  F  V  I  S  S  K  L  Y  L  N  G  N  S  F  H  I  S  S  S  L  F </first_frame>
            <second_frame>  G  A  F  E  G  N  H  A  S  N  C  *  Q  C  S  A  R  N  S  V  V  L  F  F  Q  I  C  * :   Y  N  S  E  E  V  F  F  D  R  C  N  N  I  Y  R  H  S  I  C  S  A  V  W  S  Y  T  D  R  K  L  S  S  W  D  F  C  C  F  H  F  N  A  S   : V  L  F  T  S  F  K  S  *  R  *  S  T  K  R  D  S  G  V  D  *  R  P  G  E  P  *  :  P  *  R  F  I  L  C  K  Y  G  S  R  S  K  *  G   : G  K  S  S  S  R  T  *  *  K  A  A  T  S  S  K  M  K  L  L  E  L :   S  F  V  A  A  D  I  V  V  E  S  I  Y  S  H  S  V  *  Y  G  E  E  T  V  L  L  *  S  L  F  S  S  L  S  K  M  C  F  M  G  L  F  R  L  E  R  R  I  C  G  W  R  G  F  R  *  T  T  T  I  E  L  L  C  N  T  N  T  S  C  C  I  I  S  Y  K  H  M  N  F  I  V  N  N  L  E  L  S  I  L  S  Y  I  L  V  I  N  *  I  L  M  I  H  P  W  M  C  *  I  K  H  F  F  L  *  F  Q  A  N  C  T  *  M  V  I  H  F  I  Y  L  L  L  Y   </second_frame>
            <third_frame>   G  H  S  K  A  T  M  L  L  I  V  N  N  A  A  Q  G  I  L  S  S  F  F  F  K  Y  A   : D  T  I  L  K  K  Y  S  S  T  V  A  T  I  F  T  G  I  A  S  A  L  L  F  G  H  T  L  T  V  N  F  L  L  G  I  S  V  V  F  I  S  M  H  Q  :  F  F  S  P  L  S  K  V  K  D  D  Q  Q  N  G  T  V  E  L  I  D  V  R  E  N  H  S :   P  K  D  S  S  F  V  N  M  A  A  G  A  N  E  E  :  A  S  H  R  V  G  P  D  E  R  Q  P  L  L  P  R  *  S  Y  L  N   : C  H  L  *  Q  Q  I  L  W  W  R  A  F  T  V  I  Q  C  N  M  E  K  K  Q  C  C  C  S  L  S  F  L  L  S  P  K  C  A  S  W  D  C  F  A  W  R  E  G  Y  V  D  G  E  V  L  G  R  Q  Q  Q  *  S  C  Y  A  I  R  I  R  A  V  V  L  *  V  T  N  T  *  I  L  L  *  T  I  *  S  Y  Q  F  F  H  I  F  L  *  S  I  E  F  *  *  Y  T  R  G  C  V  R  L  N  I  S  F  C  N  F  K  Q  I  V  L  E  W  *  F  I  S  Y  I  F  F  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66238" stop="66157"/>
                    <exon start="65987" stop="65854"/>
                    <exon start="65773" stop="65694"/>
                    <exon start="64720" stop="64672"/>
                    <exon start="64578" stop="64528"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHSKATMLLIVNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASALLFGHTLTVNFLLGISVVFISMHQFFSPLSKVKDDQQNGTVELIDVRENHSPKDSSFVNMAAGANEEASHRVGPDERQPLLPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="77743" PGL_stop="66864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77743" e_stop="77562"/>
            <exon e_start="76889" e_stop="76694"/>
            <exon e_start="76357" e_stop="76241"/>
            <exon e_start="76157" e_stop="76101"/>
            <exon e_start="70802" e_stop="70725"/>
            <exon e_start="69799" e_stop="69755"/>
            <exon e_start="68113" e_stop="68054"/>
            <exon e_start="67917" e_stop="67795"/>
            <exon e_start="67657" e_stop="67580"/>
            <exon e_start="66931" e_stop="66917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.211" e_score="0.974"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77743" e_stop="77562" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77561" i_stop="76890" i_length="672"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="76889" e_stop="76694" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.920" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76357" e_stop="76241" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76157" e_stop="76101" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.862" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76100" i_stop="70803" i_length="5298"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70802" e_stop="70725" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.967">
            <gDNA_intron_boundary i_start="70724" i_stop="69800" i_length="925"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69799" e_stop="69755" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69754" i_stop="68114" i_length="1641"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68113" e_stop="68054" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.948" acc_prob="0.606">
            <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67917" e_stop="67795" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="0.911" acc_prob="0.947">
            <gDNA_intron_boundary i_start="67794" i_stop="67658" i_length="137"/>
          </intron>
          <exon e_serial="9" e_score="0.974">
            <gDNA_exon_boundary e_start="67657" e_stop="67580" e_length="78"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.211">
            <gDNA_intron_boundary i_start="67579" i_stop="66932" i_length="648"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66931" e_stop="66917" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77743" stop="77562"/>
              <exon start="76889" stop="76694"/>
              <exon start="76357" stop="76241"/>
              <exon start="76157" stop="76101"/>
              <exon start="70802" stop="70725"/>
              <exon start="69799" stop="69755"/>
              <exon start="68113" stop="68054"/>
              <exon start="67917" stop="67796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77709" stop="77562"/>
              <exon start="76889" stop="76694"/>
              <exon start="76357" stop="76241"/>
              <exon start="76157" stop="76101"/>
              <exon start="70802" stop="70725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77705" stop="77562"/>
              <exon start="76889" stop="76694"/>
              <exon start="76357" stop="76241"/>
              <exon start="76157" stop="76101"/>
              <exon start="70802" stop="70725"/>
              <exon start="69799" stop="69755"/>
              <exon start="68113" stop="68077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76357" stop="76241"/>
              <exon start="76157" stop="76101"/>
              <exon start="70802" stop="70725"/>
              <exon start="69799" stop="69755"/>
              <exon start="68113" stop="68054"/>
              <exon start="67917" stop="67795"/>
              <exon start="67657" stop="67580"/>
              <exon start="66931" stop="66917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76353" stop="76241"/>
              <exon start="76157" stop="76101"/>
              <exon start="70802" stop="70725"/>
              <exon start="69799" stop="69755"/>
              <exon start="68113" stop="68054"/>
              <exon start="67917" stop="67846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGAAGGAGCCCTTTTACAACTCTTAATACAACCAAACAAACTCTTTCACAATTCCCTTCCTAAATCTCCAAATTTCAACTTTCACTCCACTCGTCTCAGCTCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAG : GTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG : CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG : GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG : GCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAG : TTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAG : GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG : TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTT : GTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAG : AACTTATTTCTCTAT</gDNA_template>
            <first_frame> S  E  G  A  L  L  Q  L  L  I  Q  P  N  K  L  F  H  N  S  L  P  K  S  P  N  F  N  F  H  S  T  R  L  S  S  T  P  S  V  G  R  *  A  G  L  I  W  I  W  P  E  Y  L  S  S  R  Q  F  S  H  R :   *  A  E  I  L  S  S  *  L  M  K  N  G  M  A  E  C  A  V  C  H  S  K  L  V  S  P  S  V  K  T  I  S  R  A  Y  D  R  H  R  S  K  I  S  S  K  Q  R  A  L  N  V  L  L  V  V  G  D  C  M  L  V  G  L  Q  :  P  V  L  V  F  M  S  K  V  D  G  K  F  K  F  S  P  V  S  V  N  F  L  T  E  A  T  K  V  V  F  A  I  I  M  L  L  I  Q  :  A  R  H  Q  K  V  G  E  K  P  L  L  S  I  S  T  F  V  Q  :  A  A  R  N  N  V  L  L  A  V  P  A  L  L  Y  A  I  N  N  Y  L  K  F  I  M  Q  :  L  Y  F  N  P  A  T  V  K  M  L  S  N  L  K  :  V  L  V  I  A  V  L  L  K  F  I  M  K  R  R  F  S  V  I  Q  :  W  E  A  L  A  L  L  L  I  G  I  S  I  N  Q  L  R  S  L  P  E  G  T  T  S  L  A  L  P  V  T  T  I  A  Y  I  Y  T  L  I  F  :  V  T  V  P  S  M  A  S  V  F  N  E  Y  A  L  K  S  Q  Y  D  T  S  I  Y  L  Q  :  N  L  F  L  Y </first_frame>
            <second_frame>  V  K  E  P  F  Y  N  S  *  Y  N  Q  T  N  S  F  T  I  P  F  L  N  L  Q  I  S  T  F  T  P  L  V  S  A  Q  L  H  P  S  V  G  E  P  D  L  S  G  S  G  R  N  I  C  L  P  A  N  S  L  T   : G  E  L  K  Y  *  A  V  D  S  *  R  T  V  W  Q  N  A  L  S  V  I  P  S  L  F  L  H  L  *  K  L  F  Q  G  H  M  I  D  T  E  A  R  F  H  Q  S  N  V  L  S  M  S  Y  W  L  *  E  I  V  C  W  L  V  Y  S :   L  F  W  Y  L  C  R  K  W  M  E  N  S  S  L  V  P  *  V  S  T  S  *  Q  R  R  Q  K  S  S  L  Q  *  *  C  F  *  S  R :   P  G  I  K  R  L  E  K  S  H  F  F  Q  Y  P  H  L  S  R :   L  Q  E  T  M  S  F  L  L  Y  Q  H  Y  S  M  P  *  T  T  T  *  S  S  S  C  S :   Y  I  S  I  Q  Q  Q  *  R  C  *  A  I  *  R :   F  W  L  L  Q  C  C  *  N  L  S  *  K  G  D  F  P  *  F  S :   G  R  L  L  L  C  C  *  L  G  *  A  L  I  N  F  D  P  F  L  K  A  P  L  L  W  L  F  Q  L  P  Q  L  P  T  S  I  H  *  F  L :   *  L  C  L  L  W  P  Q  Y  S  M  S  M  L  *  R  V  N  M  T  L  A  Y  I  S  R :   T  Y  F  S   </second_frame>
            <third_frame>   *  R  S  P  F  T  T  L  N  T  T  K  Q  T  L  S  Q  F  P  S  *  I  S  K  F  Q  L  S  L  H  S  S  Q  L  N  S  I  R  R  S  V  S  R  T  Y  L  D  L  A  G  I  F  V  F  P  P  I  L  S  Q  :  V  S  *  N  T  K  Q  L  T  H  E  E  R  Y  G  R  M  R  C  L  S  F  Q  A  C  F  S  I  C  E  N  Y  F  K  G  I  *  S  T  Q  K  Q  D  F  I  K  A  T  C  S  Q  C  P  I  G  C  R  R  L  Y  A  G  W  F  T   : A  C  F  G  I  Y  V  E  S  G  W  K  I  Q  V  *  S  R  K  C  Q  L  L  D  R  G  D  K  S  R  L  C  N  N  N  A  F  N  P   : G  Q  A  S  K  G  W  R  K  A  T  S  F  N  I  H  I  C  P   : G  C  K  K  Q  C  P  S  C  C  T  S  T  T  L  C  H  K  Q  L  P  K  V  H  H  A   : V  I  F  Q  S  S  N  S  E  D  A  K  Q  S  E   : G  F  G  Y  C  S  A  V  E  I  Y  H  E  K  A  I  F  R  N  S   : V  G  G  S  C  F  A  A  N  W  D  K  H  *  S  T  S  I  P  S  *  R  H  H  F  F  G  S  S  S  Y  H  N  C  L  H  L  Y  T  D  F   : C  N  C  A  F  Y  G  L  S  I  Q  *  V  C  F  E  E  S  I  *  H  *  H  I  S  P   : E  L  I  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76864" stop="76694"/>
                    <exon start="76357" stop="76241"/>
                    <exon start="76157" stop="76101"/>
                    <exon start="70802" stop="70725"/>
                    <exon start="69799" stop="69755"/>
                    <exon start="68113" stop="68054"/>
                    <exon start="67917" stop="67795"/>
                    <exon start="67657" stop="67580"/>
                    <exon start="66931" stop="66917"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMKNGMAECAVCHSKLVSPSVKTISRAYDRHRSKISSKQRALNVLLVVGDCMLVGLQPVLVFMSKVDGKFKFSPVSVNFLTEATKVVFAIIMLLIQARHQKVGEKPLLSISTFVQAARNNVLLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKFIMKRRFSVIQWEALALLLIGISINQLRSLPEGTTSLALPVTTIAYIYTLIFVTVPSMASVFNEYALKSQYDTSIYLQNLFLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77641" e_stop="77313"/>
            <exon e_start="76889" e_stop="76694"/>
            <exon e_start="76357" e_stop="76241"/>
            <exon e_start="76157" e_stop="76101"/>
            <exon e_start="68113" e_stop="68054"/>
            <exon e_start="67917" e_stop="67795"/>
            <exon e_start="67657" e_stop="67580"/>
            <exon e_start="66931" e_stop="66864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.992" e_score="0.997"/>
          <exon-intron don_prob="0.920" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.211" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="77641" e_stop="77313" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77312" i_stop="76890" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76889" e_stop="76694" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.920" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76357" e_stop="76241" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76157" e_stop="76101" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.862" acc_prob="0.997">
            <gDNA_intron_boundary i_start="76100" i_stop="68114" i_length="7987"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68113" e_stop="68054" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="0.606">
            <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67917" e_stop="67795" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.911" acc_prob="0.947">
            <gDNA_intron_boundary i_start="67794" i_stop="67658" i_length="137"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67657" e_stop="67580" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.211">
            <gDNA_intron_boundary i_start="67579" i_stop="66932" i_length="648"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66931" e_stop="66864" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77641" stop="77313"/>
              <exon start="76889" stop="76735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76775" stop="76694"/>
              <exon start="76357" stop="76241"/>
              <exon start="76157" stop="76101"/>
              <exon start="68113" stop="68054"/>
              <exon start="67917" stop="67795"/>
              <exon start="67657" stop="67580"/>
              <exon start="66931" stop="66864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76764" stop="76694"/>
              <exon start="76357" stop="76241"/>
              <exon start="76157" stop="76101"/>
              <exon start="68113" stop="68054"/>
              <exon start="67917" stop="67795"/>
              <exon start="67657" stop="67580"/>
              <exon start="66931" stop="66893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76764" stop="76694"/>
              <exon start="76357" stop="76241"/>
              <exon start="76157" stop="76101"/>
              <exon start="68113" stop="68054"/>
              <exon start="67917" stop="67795"/>
              <exon start="67657" stop="67580"/>
              <exon start="66931" stop="66893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAGGTCACTTCTTCTCTTTTTGCTTATGTTTAATGTTAAAATAAGTTTGATATGTAGATCTATTTCATGTATGGATGCTTGATCCCTCTCAAATTCAATACTATCTGTTGTTATCATGCAAAAAGATTTCATTTTTTTATCCCTTGGATAGTGAGATCTGCGCTTTCTAAATTTCGCATTTTCATCATCTTTGGGACAAGTGAAGTCAGGACTTATTCAGCTGCAGCTGCACTAAGAGTTCACAAAGAACAA : GTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG : CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG : GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG : GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG : TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTT : GTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAG : AACTTATTTCTCTATGGTTATGGTGCTATATTCAACTTTCTAGCCATTCTTGGGATTGCTGTATTTAA</gDNA_template>
            <first_frame> S  T  P  S  V  G  R  *  A  G  L  I  W  I  W  P  E  Y  L  S  S  R  Q  F  S  H  R  S  L  L  L  F  L  L  M  F  N  V  K  I  S  L  I  C  R  S  I  S  C  M  D  A  *  S  L  S  N  S  I  L  S  V  V  I  M  Q  K  D  F  I  F  L  S  L  G  *  *  D  L  R  F  L  N  F  A  F  S  S  S  L  G  Q  V  K  S  G  L  I  Q  L  Q  L  H  *  E  F  T  K  N  K :   *  A  E  I  L  S  S  *  L  M  K  N  G  M  A  E  C  A  V  C  H  S  K  L  V  S  P  S  V  K  T  I  S  R  A  Y  D  R  H  R  S  K  I  S  S  K  Q  R  A  L  N  V  L  L  V  V  G  D  C  M  L  V  G  L  Q  :  P  V  L  V  F  M  S  K  V  D  G  K  F  K  F  S  P  V  S  V  N  F  L  T  E  A  T  K  V  V  F  A  I  I  M  L  L  I  Q  :  A  R  H  Q  K  V  G  E  K  P  L  L  S  I  S  T  F  V  Q  :  V  L  V  I  A  V  L  L  K  F  I  M  K  R  R  F  S  V  I  Q  :  W  E  A  L  A  L  L  L  I  G  I  S  I  N  Q  L  R  S  L  P  E  G  T  T  S  L  A  L  P  V  T  T  I  A  Y  I  Y  T  L  I  F  :  V  T  V  P  S  M  A  S  V  F  N  E  Y  A  L  K  S  Q  Y  D  T  S  I  Y  L  Q  :  N  L  F  L  Y  G  Y  G  A  I  F  N  F  L  A  I  L  G  I  A  V  F   </first_frame>
            <second_frame>  Q  L  H  P  S  V  G  E  P  D  L  S  G  S  G  R  N  I  C  L  P  A  N  S  L  T  G  H  F  F  S  F  C  L  C  L  M  L  K  *  V  *  Y  V  D  L  F  H  V  W  M  L  D  P  S  Q  I  Q  Y  Y  L  L  L  S  C  K  K  I  S  F  F  Y  P  L  D  S  E  I  C  A  F  *  I  S  H  F  H  H  L  W  D  K  *  S  Q  D  L  F  S  C  S  C  T  K  S  S  Q  R  T   : S  E  L  K  Y  *  A  V  D  S  *  R  T  V  W  Q  N  A  L  S  V  I  P  S  L  F  L  H  L  *  K  L  F  Q  G  H  M  I  D  T  E  A  R  F  H  Q  S  N  V  L  S  M  S  Y  W  L  *  E  I  V  C  W  L  V  Y  S :   L  F  W  Y  L  C  R  K  W  M  E  N  S  S  L  V  P  *  V  S  T  S  *  Q  R  R  Q  K  S  S  L  Q  *  *  C  F  *  S  R :   P  G  I  K  R  L  E  K  S  H  F  F  Q  Y  P  H  L  S  R :   F  W  L  L  Q  C  C  *  N  L  S  *  K  G  D  F  P  *  F  S :   G  R  L  L  L  C  C  *  L  G  *  A  L  I  N  F  D  P  F  L  K  A  P  L  L  W  L  F  Q  L  P  Q  L  P  T  S  I  H  *  F  L :   *  L  C  L  L  W  P  Q  Y  S  M  S  M  L  *  R  V  N  M  T  L  A  Y  I  S  R :   T  Y  F  S  M  V  M  V  L  Y  S  T  F  *  P  F  L  G  L  L  Y  L  </second_frame>
            <third_frame>   N  S  I  R  R  S  V  S  R  T  Y  L  D  L  A  G  I  F  V  F  P  P  I  L  S  Q  V  T  S  S  L  F  A  Y  V  *  C  *  N  K  F  D  M  *  I  Y  F  M  Y  G  C  L  I  P  L  K  F  N  T  I  C  C  Y  H  A  K  R  F  H  F  F  I  P  W  I  V  R  S  A  L  S  K  F  R  I  F  I  I  F  G  T  S  E  V  R  T  Y  S  A  A  A  A  L  R  V  H  K  E  Q  :  V  S  *  N  T  K  Q  L  T  H  E  E  R  Y  G  R  M  R  C  L  S  F  Q  A  C  F  S  I  C  E  N  Y  F  K  G  I  *  S  T  Q  K  Q  D  F  I  K  A  T  C  S  Q  C  P  I  G  C  R  R  L  Y  A  G  W  F  T   : A  C  F  G  I  Y  V  E  S  G  W  K  I  Q  V  *  S  R  K  C  Q  L  L  D  R  G  D  K  S  R  L  C  N  N  N  A  F  N  P   : G  Q  A  S  K  G  W  R  K  A  T  S  F  N  I  H  I  C  P   : G  F  G  Y  C  S  A  V  E  I  Y  H  E  K  A  I  F  R  N  S   : V  G  G  S  C  F  A  A  N  W  D  K  H  *  S  T  S  I  P  S  *  R  H  H  F  F  G  S  S  S  Y  H  N  C  L  H  L  Y  T  D  F   : C  N  C  A  F  Y  G  L  S  I  Q  *  V  C  F  E  E  S  I  *  H  *  H  I  S  P   : E  L  I  S  L  W  L  W  C  Y  I  Q  L  S  S  H  S  W  D  C  C  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76864" stop="76694"/>
                    <exon start="76357" stop="76241"/>
                    <exon start="76157" stop="76101"/>
                    <exon start="68113" stop="68054"/>
                    <exon start="67917" stop="67795"/>
                    <exon start="67657" stop="67580"/>
                    <exon start="66931" stop="66866"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMKNGMAECAVCHSKLVSPSVKTISRAYDRHRSKISSKQRALNVLLVVGDCMLVGLQPVLVFMSKVDGKFKFSPVSVNFLTEATKVVFAIIMLLIQARHQKVGEKPLLSISTFVQVLVIAVLLKFIMKRRFSVIQWEALALLLIGISINQLRSLPEGTTSLALPVTTIAYIYTLIFVTVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLAILGIAVF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77507" stop="77313"/>
                    <exon start="76889" stop="76881"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYFMYGCLIPLKFNTICCYHAKRFHFFIPWIVRSALSKFRIFIIFGTSEVRTYSAAAALRVHKEQVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="82673" PGL_stop="82047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82673" e_stop="82550"/>
            <exon e_start="82213" e_stop="82047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="82673" e_stop="82550" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82549" i_stop="82214" i_length="336"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="82213" e_stop="82047" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82673" stop="82550"/>
              <exon start="82213" stop="82047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745242" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGCGGAGGAGACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGTGGAGGTGACTTGTAGTAATAAGGTGGAGGTGGTG : AGGGAGAAGGAGGTGGTGGGGACTTGTAGACGTATGGTGGTGGTGGAGAAGGTGATGGTGGTGGTGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGGCGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGGCGGGGAC</gDNA_template>
            <first_frame> D  L  *  *  *  G  G  G  G  D  G  E  G  G  G  G  D  L  *  *  *  G  G  G  G  D  G  E  G  G  G  G  D  L  *  *  *  G  G  G  G   : E  G  E  G  G  G  G  D  L  *  T  Y  G  G  G  G  E  G  D  G  G  G  G  D  L  Y  T  Y  G  G  G  G  E  G  E  G  G  G  G  D  L  Y  T  Y  G  G  G  G  E  G  E  G  G  G  G  D </first_frame>
            <second_frame>  T  C  S  N  K  V  E  V  V  M  V  K  V  A  E  E  T  C  S  N  K  V  E  V  V  M  V  K  V  V  E  V  T  C  S  N  K  V  E  V  V  :  R  E  K  E  V  V  G  T  C  R  R  M  V  V  V  E  K  V  M  V  V  V  G  T  C  T  R  T  V  V  E  E  R  E  K  E  V  A  G  T  C  T  R  T  V  V  E  E  R  E  K  E  V  A  G   </second_frame>
            <third_frame>   L  V  V  I  R  W  R  W  *  W  *  R  W  R  R  R  L  V  V  I  R  W  R  W  *  W  *  R  W  W  R  *  L  V  V  I  R  W  R  W  * :   G  R  R  R  W  W  G  L  V  D  V  W  W  W  W  R  R  *  W  W  W  W  G  L  V  H  V  R  W  W  R  R  G  R  R  R  W  R  G  L  V  H  V  R  W  W  R  R  G  R  R  R  W  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82672" stop="82550"/>
                    <exon start="82213" stop="82049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCSNKVEVVMVKVAEETCSNKVEVVMVKVVEVTCSNKVEVVREKEVVGTCRRMVVVEKVMVVVGTCTRTVVEEREKEVAGTCTRTVVEEREKEVAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="87519" PGL_stop="85173"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87321" e_stop="86862"/>
            <exon e_start="86778" e_stop="86384"/>
            <exon e_start="86216" e_stop="86205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.963" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="0.254" e_score="1.000"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="87321" e_stop="86862" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.963">
            <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86778" e_stop="86384" e_length="395"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.254">
            <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="0.778">
            <gDNA_exon_boundary e_start="86216" e_stop="86205" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87321" stop="86862"/>
              <exon start="86778" stop="86612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87304" stop="86862"/>
              <exon start="86778" stop="86603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87269" stop="86862"/>
              <exon start="86778" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87224" stop="86862"/>
              <exon start="86778" stop="86499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87211" stop="86862"/>
              <exon start="86778" stop="86596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87200" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87200" stop="86862"/>
              <exon start="86778" stop="86618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87196" stop="86862"/>
              <exon start="86778" stop="86633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87171" stop="86862"/>
              <exon start="86778" stop="86613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87112" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87106" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87102" stop="86862"/>
              <exon start="86778" stop="86682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87081" stop="86862"/>
              <exon start="86778" stop="86687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87080" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87073" stop="86862"/>
              <exon start="86778" stop="86750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87059" stop="86862"/>
              <exon start="86778" stop="86392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87057" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87054" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87035" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87015" stop="86862"/>
              <exon start="86778" stop="86388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87013" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87011" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87006" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86960" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86960" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86959" stop="86862"/>
              <exon start="86778" stop="86489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86955" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86937" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86937" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86900" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431578" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86893" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86893" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86893" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86892" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86738" stop="86384"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACAAGTCTCCACCACCACCAGACCCATCTCCCCCACCACCATACTACTACAAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA : ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA : AAAATTAAATAA</gDNA_template>
            <first_frame> L  Q  V  S  T  T  T  R  P  I  S  P  T  T  I  L  L  Q  V  S  S  T  T  I  T  I  T  P  T  S  I  L  L  Q  I  T  T  T  T  I  P  I  T  S  T  S  L  L  L  Q  V  S  S  T  T  I  A  I  S  S  S  T  I  L  L  Q  V  P  T  T  T  I  T  V  S  S  S  T  I  L  L  Q  I  T  T  T  P  I  T  I  T  T  P  S  L  L  L  S  L  S  T  S  T  R  E  V  S  S  S  S  I  L  L  Q  L  T  S  P  T  R  K  I  T  S  S  S  S  I  H  L  W  F  S  A  T  T  S  P  L  L  S  S  W  K  S  L  A  I  F  H  N  H  S   : N  F  S  F  S  H  K  I  S  D  G  F  L  R  R  R  L  I  V  P  C  S  N  A  I  N  K  M  F  N  F  A  I  E  R  L  I  P  S  D  L  D  H  F  A  S  A  S  L  V  S  L  L  H  I  V  L  C  V  S  S  R  G  K  W  L  K  *  L  E  I  V  I  I  H  H  L  V  Y  N  F  I  C  C  F  F  I  V  I  I  I  Y  Y  Y  Y  M  Y  R  L  C  N  L  I  R  F  A  L  N  Y  C  W  P  S  P  S  A  Y  L  C  F  C  A  P  N  Q  *  R  D  E  F  C  S  :  K  I  K  * </first_frame>
            <second_frame>  Y  K  S  P  P  P  P  D  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  H  S  P  P  P  P  V  K  S  P  P  P  P  Y  Y  Y  S  S  P  P  P  P  V  K  S  P  P  P  P  V  Y  I  Y  G  S  P  P  P  P  V  H  Y  *  A  V  G  K  A  W  P  F  S  T  T  T  Q  :  I  S  V  S  V  T  K  *  V  M  G  S  *  G  E  D  *  *  F  H  V  Q  M  Q  L  I  R  C  S  T  L  Q  L  R  G  *  F  L  V  T  W  T  T  L  L  L  L  L  W  F  P  Y  Y  T  L  F  S  V  C  L  H  V  E  S  G  L  N  S  W  K  *  *  L  Y  I  I  *  C  T  I  S  Y  V  A  S  L  *  *  *  *  F  I  I  I  I  C  I  G  F  V  I  *  F  V  L  L  L  I  I  V  G  R  L  L  V  P  T  C  A  F  V  H  Q  I  N  K  E  M  N  F  V  Q :   K  L  N   </second_frame>
            <third_frame>   T  S  L  H  H  H  Q  T  H  L  P  H  H  H  T  T  T  S  L  L  H  H  H  H  H  H  P  H  L  H  T  T  T  N  H  H  H  H  H  P  H  H  L  H  L  P  I  T  T  S  L  L  H  H  H  R  H  L  L  L  H  H  T  T  T  S  P  H  H  H  H  H  R  L  L  L  H  H  T  T  T  N  H  H  H  P  H  H  H  H  H  P  L  P  T  T  I  T  L  H  L  H  P  *  S  L  L  L  L  H  T  T  T  A  H  L  P  H  P  *  N  H  L  L  L  Q  Y  T  S  M  V  L  R  H  H  Q  S  T  T  K  Q  L  E  K  L  G  H  F  P  Q  P  L  K :   F  Q  F  Q  S  Q  N  K  *  W  V  L  E  E  K  I  N  S  S  M  F  K  C  N  *  *  D  V  Q  L  C  N  *  E  V  D  S  *  *  L  G  P  L  C  F  C  F  S  G  F  L  I  T  H  C  S  L  C  V  F  T  W  K  V  A  *  I  V  G  N  S  N  Y  T  S  S  S  V  Q  F  H  M  L  L  L  Y  S  N  N  N  L  L  L  L  Y  V  *  A  L  *  F  D  S  F  C  S  *  L  L  L  A  V  S  *  C  L  L  V  L  L  C  T  K  S  I  K  R  *  I  L  F   : K  N  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87321" stop="86862"/>
                    <exon start="86778" stop="86576"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVSTTTRPISPTTILLQVSSTTITITPTSILLQITTTTIPITSTSLLLQVSSTTIAISSSTILLQVPTTTITVSSSTILLQITTTPITITTPSLLLSLSTSTREVSSSSILLQLTSPTRKITSSSSIHLWFSATTSPLLSSWKSLAIFHNHSNFSFSHKISDGFLRRRLIVPCSNAINKMFNFAIERLIPSDLDHFASASLVSLLHIVLCVSSRGKWLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87321" e_stop="86862"/>
            <exon e_start="86778" e_stop="86384"/>
            <exon e_start="85215" e_stop="85173"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.963" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="87321" e_stop="86862" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.963">
            <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86778" e_stop="86384" e_length="395"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="86383" i_stop="85216" i_length="1168"/>
          </intron>
          <exon e_serial="3" e_score="0.000">
            <gDNA_exon_boundary e_start="85215" e_stop="85173" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87321" stop="86862"/>
              <exon start="86778" stop="86612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87304" stop="86862"/>
              <exon start="86778" stop="86603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87269" stop="86862"/>
              <exon start="86778" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87224" stop="86862"/>
              <exon start="86778" stop="86499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87211" stop="86862"/>
              <exon start="86778" stop="86596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87200" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87200" stop="86862"/>
              <exon start="86778" stop="86618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87196" stop="86862"/>
              <exon start="86778" stop="86633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87171" stop="86862"/>
              <exon start="86778" stop="86613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87112" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87106" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87102" stop="86862"/>
              <exon start="86778" stop="86682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87081" stop="86862"/>
              <exon start="86778" stop="86687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87073" stop="86862"/>
              <exon start="86778" stop="86750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87059" stop="86862"/>
              <exon start="86778" stop="86392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87054" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87015" stop="86862"/>
              <exon start="86778" stop="86388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87011" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87006" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86960" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86960" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86959" stop="86862"/>
              <exon start="86778" stop="86489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86924" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="85215" stop="85173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86900" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431578" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86893" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86893" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86893" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86892" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430549" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACAAGTCTCCACCACCACCAGACCCATCTCCCCCACCACCATACTACTACAAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA : ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</gDNA_template>
            <first_frame> L  Q  V  S  T  T  T  R  P  I  S  P  T  T  I  L  L  Q  V  S  S  T  T  I  T  I  T  P  T  S  I  L  L  Q  I  T  T  T  T  I  P  I  T  S  T  S  L  L  L  Q  V  S  S  T  T  I  A  I  S  S  S  T  I  L  L  Q  V  P  T  T  T  I  T  V  S  S  S  T  I  L  L  Q  I  T  T  T  P  I  T  I  T  T  P  S  L  L  L  S  L  S  T  S  T  R  E  V  S  S  S  S  I  L  L  Q  L  T  S  P  T  R  K  I  T  S  S  S  S  I  H  L  W  F  S  A  T  T  S  P  L  L  S  S  W  K  S  L  A  I  F  H  N  H  S   : N  F  S  F  S  H  K  I  S  D  G  F  L  R  R  R  L  I  V  P  C  S  N  A  I  N  K  M  F  N  F  A  I  E  R  L  I  P  S  D  L  D  H  F  A  S  A  S  L  V  S  L  L  H  I  V  L  C  V  S  S  R  G  K  W  L  K  *  L  E  I  V  I  I  H  H  L  V  Y  N  F  I  C  C  F  F  I  V  I  I  I  Y  Y  Y  Y  M  Y  R  L  C  N  L  I  R  F  A  L  N  Y  C  W  P  S  P  S  A  Y  L  C  F  C  A  P  N  Q  *  R  D  E  F  C  S  :  F  F  F  F  F  F  F  F  F  F  F  F  F  F  </first_frame>
            <second_frame>  Y  K  S  P  P  P  P  D  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  H  S  P  P  P  P  V  K  S  P  P  P  P  Y  Y  Y  S  S  P  P  P  P  V  K  S  P  P  P  P  V  Y  I  Y  G  S  P  P  P  P  V  H  Y  *  A  V  G  K  A  W  P  F  S  T  T  T  Q  :  I  S  V  S  V  T  K  *  V  M  G  S  *  G  E  D  *  *  F  H  V  Q  M  Q  L  I  R  C  S  T  L  Q  L  R  G  *  F  L  V  T  W  T  T  L  L  L  L  L  W  F  P  Y  Y  T  L  F  S  V  C  L  H  V  E  S  G  L  N  S  W  K  *  *  L  Y  I  I  *  C  T  I  S  Y  V  A  S  L  *  *  *  *  F  I  I  I  I  C  I  G  F  V  I  *  F  V  L  L  L  I  I  V  G  R  L  L  V  P  T  C  A  F  V  H  Q  I  N  K  E  M  N  F  V  H :   F  F  F  F  F  F  F  F  F  F  F  F  F  F </second_frame>
            <third_frame>   T  S  L  H  H  H  Q  T  H  L  P  H  H  H  T  T  T  S  L  L  H  H  H  H  H  H  P  H  L  H  T  T  T  N  H  H  H  H  H  P  H  H  L  H  L  P  I  T  T  S  L  L  H  H  H  R  H  L  L  L  H  H  T  T  T  S  P  H  H  H  H  H  R  L  L  L  H  H  T  T  T  N  H  H  H  P  H  H  H  H  H  P  L  P  T  T  I  T  L  H  L  H  P  *  S  L  L  L  L  H  T  T  T  A  H  L  P  H  P  *  N  H  L  L  L  Q  Y  T  S  M  V  L  R  H  H  Q  S  T  T  K  Q  L  E  K  L  G  H  F  P  Q  P  L  K :   F  Q  F  Q  S  Q  N  K  *  W  V  L  E  E  K  I  N  S  S  M  F  K  C  N  *  *  D  V  Q  L  C  N  *  E  V  D  S  *  *  L  G  P  L  C  F  C  F  S  G  F  L  I  T  H  C  S  L  C  V  F  T  W  K  V  A  *  I  V  G  N  S  N  Y  T  S  S  S  V  Q  F  H  M  L  L  L  Y  S  N  N  N  L  L  L  L  Y  V  *  A  L  *  F  D  S  F  C  S  *  L  L  L  A  V  S  *  C  L  L  V  L  L  C  T  K  S  I  K  R  *  I  L  F   : I  F  F  F  F  F  F  F  F  F  F  F  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87321" stop="86862"/>
                    <exon start="86778" stop="86576"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVSTTTRPISPTTILLQVSSTTITITPTSILLQITTTTIPITSTSLLLQVSSTTIAISSSTILLQVPTTTITVSSSTILLQITTTPITITTPSLLLSLSTSTREVSSSSILLQLTSPTRKITSSSSIHLWFSATTSPLLSSWKSLAIFHNHSNFSFSHKISDGFLRRRLIVPCSNAINKMFNFAIERLIPSDLDHFASASLVSLLHIVLCVSSRGKWLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="87321" e_stop="86862"/>
            <exon e_start="86778" e_stop="86382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.963" e_score="0.968"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="87321" e_stop="86862" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.963">
            <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86778" e_stop="86382" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87321" stop="86862"/>
              <exon start="86778" stop="86612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87304" stop="86862"/>
              <exon start="86778" stop="86603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87269" stop="86862"/>
              <exon start="86778" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87224" stop="86862"/>
              <exon start="86778" stop="86499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87211" stop="86862"/>
              <exon start="86778" stop="86596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87200" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87200" stop="86862"/>
              <exon start="86778" stop="86618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87196" stop="86862"/>
              <exon start="86778" stop="86633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87171" stop="86862"/>
              <exon start="86778" stop="86613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87112" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87106" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87102" stop="86862"/>
              <exon start="86778" stop="86682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87081" stop="86862"/>
              <exon start="86778" stop="86687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87073" stop="86862"/>
              <exon start="86778" stop="86750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87059" stop="86862"/>
              <exon start="86778" stop="86392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87054" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87015" stop="86862"/>
              <exon start="86778" stop="86388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87011" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87006" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86960" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86960" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86959" stop="86862"/>
              <exon start="86778" stop="86489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86927" stop="86862"/>
              <exon start="86778" stop="86382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86900" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431578" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86893" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86893" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86893" stop="86862"/>
              <exon start="86778" stop="86384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86892" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430549" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACAAGTCTCCACCACCACCAGACCCATCTCCCCCACCACCATACTACTACAAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA : ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACT</gDNA_template>
            <first_frame> L  Q  V  S  T  T  T  R  P  I  S  P  T  T  I  L  L  Q  V  S  S  T  T  I  T  I  T  P  T  S  I  L  L  Q  I  T  T  T  T  I  P  I  T  S  T  S  L  L  L  Q  V  S  S  T  T  I  A  I  S  S  S  T  I  L  L  Q  V  P  T  T  T  I  T  V  S  S  S  T  I  L  L  Q  I  T  T  T  P  I  T  I  T  T  P  S  L  L  L  S  L  S  T  S  T  R  E  V  S  S  S  S  I  L  L  Q  L  T  S  P  T  R  K  I  T  S  S  S  S  I  H  L  W  F  S  A  T  T  S  P  L  L  S  S  W  K  S  L  A  I  F  H  N  H  S   : N  F  S  F  S  H  K  I  S  D  G  F  L  R  R  R  L  I  V  P  C  S  N  A  I  N  K  M  F  N  F  A  I  E  R  L  I  P  S  D  L  D  H  F  A  S  A  S  L  V  S  L  L  H  I  V  L  C  V  S  S  R  G  K  W  L  K  *  L  E  I  V  I  I  H  H  L  V  Y  N  F  I  C  C  F  F  I  V  I  I  I  Y  Y  Y  Y  M  Y  R  L  C  N  L  I  R  F  A  L  N  Y  C  W  P  S  P  S  A  Y  L  C  F  C  A  P  N  Q  *  R  D  E  F  C  S   </first_frame>
            <second_frame>  Y  K  S  P  P  P  P  D  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  H  S  P  P  P  P  V  K  S  P  P  P  P  Y  Y  Y  S  S  P  P  P  P  V  K  S  P  P  P  P  V  Y  I  Y  G  S  P  P  P  P  V  H  Y  *  A  V  G  K  A  W  P  F  S  T  T  T  Q  :  I  S  V  S  V  T  K  *  V  M  G  S  *  G  E  D  *  *  F  H  V  Q  M  Q  L  I  R  C  S  T  L  Q  L  R  G  *  F  L  V  T  W  T  T  L  L  L  L  L  W  F  P  Y  Y  T  L  F  S  V  C  L  H  V  E  S  G  L  N  S  W  K  *  *  L  Y  I  I  *  C  T  I  S  Y  V  A  S  L  *  *  *  *  F  I  I  I  I  C  I  G  F  V  I  *  F  V  L  L  L  I  I  V  G  R  L  L  V  P  T  C  A  F  V  H  Q  I  N  K  E  M  N  F  V  H  </second_frame>
            <third_frame>   T  S  L  H  H  H  Q  T  H  L  P  H  H  H  T  T  T  S  L  L  H  H  H  H  H  H  P  H  L  H  T  T  T  N  H  H  H  H  H  P  H  H  L  H  L  P  I  T  T  S  L  L  H  H  H  R  H  L  L  L  H  H  T  T  T  S  P  H  H  H  H  H  R  L  L  L  H  H  T  T  T  N  H  H  H  P  H  H  H  H  H  P  L  P  T  T  I  T  L  H  L  H  P  *  S  L  L  L  L  H  T  T  T  A  H  L  P  H  P  *  N  H  L  L  L  Q  Y  T  S  M  V  L  R  H  H  Q  S  T  T  K  Q  L  E  K  L  G  H  F  P  Q  P  L  K :   F  Q  F  Q  S  Q  N  K  *  W  V  L  E  E  K  I  N  S  S  M  F  K  C  N  *  *  D  V  Q  L  C  N  *  E  V  D  S  *  *  L  G  P  L  C  F  C  F  S  G  F  L  I  T  H  C  S  L  C  V  F  T  W  K  V  A  *  I  V  G  N  S  N  Y  T  S  S  S  V  Q  F  H  M  L  L  L  Y  S  N  N  N  L  L  L  L  Y  V  *  A  L  *  F  D  S  F  C  S  *  L  L  L  A  V  S  *  C  L  L  V  L  L  C  T  K  S  I  K  R  *  I  L  F  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87321" stop="86862"/>
                    <exon start="86778" stop="86576"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVSTTTRPISPTTILLQVSSTTITITPTSILLQITTTTIPITSTSLLLQVSSTTIAISSSTILLQVPTTTITVSSSTILLQITTTPITITTPSLLLSLSTSTREVSSSSILLQLTSPTRKITSSSSIHLWFSATTSPLLSSWKSLAIFHNHSNFSFSHKISDGFLRRRLIVPCSNAINKMFNFAIERLIPSDLDHFASASLVSLLHIVLCVSSRGKWLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="87321" e_stop="86862"/>
            <exon e_start="86778" e_stop="86385"/>
            <exon e_start="86216" e_stop="86205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.963" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="0.254" e_score="1.000"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="87321" e_stop="86862" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.963">
            <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86778" e_stop="86385" e_length="394"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.254">
            <gDNA_intron_boundary i_start="86384" i_stop="86217" i_length="168"/>
          </intron>
          <exon e_serial="3" e_score="0.778">
            <gDNA_exon_boundary e_start="86216" e_stop="86205" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87321" stop="86862"/>
              <exon start="86778" stop="86612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87304" stop="86862"/>
              <exon start="86778" stop="86603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87269" stop="86862"/>
              <exon start="86778" stop="86705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87224" stop="86862"/>
              <exon start="86778" stop="86499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87211" stop="86862"/>
              <exon start="86778" stop="86596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87200" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87200" stop="86862"/>
              <exon start="86778" stop="86618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87196" stop="86862"/>
              <exon start="86778" stop="86633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87171" stop="86862"/>
              <exon start="86778" stop="86613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87129" stop="86862"/>
              <exon start="86778" stop="86385"/>
              <exon start="86216" stop="86205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87106" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87102" stop="86862"/>
              <exon start="86778" stop="86682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87081" stop="86862"/>
              <exon start="86778" stop="86687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87073" stop="86862"/>
              <exon start="86778" stop="86750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87059" stop="86862"/>
              <exon start="86778" stop="86392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87056" stop="86862"/>
              <exon start="86778" stop="86385"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87056" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87056" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87056" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87055" stop="86862"/>
              <exon start="86778" stop="86385"/>
              <exon start="86216" stop="86205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87052" stop="86862"/>
              <exon start="86778" stop="86385"/>
              <exon start="86216" stop="86205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87040" stop="86862"/>
              <exon start="86778" stop="86385"/>
              <exon start="86216" stop="86205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87015" stop="86862"/>
              <exon start="86778" stop="86388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87011" stop="86862"/>
              <exon start="86778" stop="86385"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87011" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87006" stop="86862"/>
              <exon start="86778" stop="86385"/>
              <exon start="86216" stop="86208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86960" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86959" stop="86862"/>
              <exon start="86778" stop="86489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86892" stop="86862"/>
              <exon start="86778" stop="86389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430549" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACAAGTCTCCACCACCACCAGACCCATCTCCCCCACCACCATACTACTACAAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA : ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTC : AAAATTAAATAA</gDNA_template>
            <first_frame> L  Q  V  S  T  T  T  R  P  I  S  P  T  T  I  L  L  Q  V  S  S  T  T  I  T  I  T  P  T  S  I  L  L  Q  I  T  T  T  T  I  P  I  T  S  T  S  L  L  L  Q  V  S  S  T  T  I  A  I  S  S  S  T  I  L  L  Q  V  P  T  T  T  I  T  V  S  S  S  T  I  L  L  Q  I  T  T  T  P  I  T  I  T  T  P  S  L  L  L  S  L  S  T  S  T  R  E  V  S  S  S  S  I  L  L  Q  L  T  S  P  T  R  K  I  T  S  S  S  S  I  H  L  W  F  S  A  T  T  S  P  L  L  S  S  W  K  S  L  A  I  F  H  N  H  S   : N  F  S  F  S  H  K  I  S  D  G  F  L  R  R  R  L  I  V  P  C  S  N  A  I  N  K  M  F  N  F  A  I  E  R  L  I  P  S  D  L  D  H  F  A  S  A  S  L  V  S  L  L  H  I  V  L  C  V  S  S  R  G  K  W  L  K  *  L  E  I  V  I  I  H  H  L  V  Y  N  F  I  C  C  F  F  I  V  I  I  I  Y  Y  Y  Y  M  Y  R  L  C  N  L  I  R  F  A  L  N  Y  C  W  P  S  P  S  A  Y  L  C  F  C  A  P  N  Q  *  R  D  E  F  C  S :   K  L  N   </first_frame>
            <second_frame>  Y  K  S  P  P  P  P  D  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  H  S  P  P  P  P  V  K  S  P  P  P  P  Y  Y  Y  S  S  P  P  P  P  V  K  S  P  P  P  P  V  Y  I  Y  G  S  P  P  P  P  V  H  Y  *  A  V  G  K  A  W  P  F  S  T  T  T  Q  :  I  S  V  S  V  T  K  *  V  M  G  S  *  G  E  D  *  *  F  H  V  Q  M  Q  L  I  R  C  S  T  L  Q  L  R  G  *  F  L  V  T  W  T  T  L  L  L  L  L  W  F  P  Y  Y  T  L  F  S  V  C  L  H  V  E  S  G  L  N  S  W  K  *  *  L  Y  I  I  *  C  T  I  S  Y  V  A  S  L  *  *  *  *  F  I  I  I  I  C  I  G  F  V  I  *  F  V  L  L  L  I  I  V  G  R  L  L  V  P  T  C  A  F  V  H  Q  I  N  K  E  M  N  F  V   : Q  N  *  I  </second_frame>
            <third_frame>   T  S  L  H  H  H  Q  T  H  L  P  H  H  H  T  T  T  S  L  L  H  H  H  H  H  H  P  H  L  H  T  T  T  N  H  H  H  H  H  P  H  H  L  H  L  P  I  T  T  S  L  L  H  H  H  R  H  L  L  L  H  H  T  T  T  S  P  H  H  H  H  H  R  L  L  L  H  H  T  T  T  N  H  H  H  P  H  H  H  H  H  P  L  P  T  T  I  T  L  H  L  H  P  *  S  L  L  L  L  H  T  T  T  A  H  L  P  H  P  *  N  H  L  L  L  Q  Y  T  S  M  V  L  R  H  H  Q  S  T  T  K  Q  L  E  K  L  G  H  F  P  Q  P  L  K :   F  Q  F  Q  S  Q  N  K  *  W  V  L  E  E  K  I  N  S  S  M  F  K  C  N  *  *  D  V  Q  L  C  N  *  E  V  D  S  *  *  L  G  P  L  C  F  C  F  S  G  F  L  I  T  H  C  S  L  C  V  F  T  W  K  V  A  *  I  V  G  N  S  N  Y  T  S  S  S  V  Q  F  H  M  L  L  L  Y  S  N  N  N  L  L  L  L  Y  V  *  A  L  *  F  D  S  F  C  S  *  L  L  L  A  V  S  *  C  L  L  V  L  L  C  T  K  S  I  K  R  *  I  L  F  :  K  I  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87321" stop="86862"/>
                    <exon start="86778" stop="86576"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVSTTTRPISPTTILLQVSSTTITITPTSILLQITTTTIPITSTSLLLQVSSTTIAISSSTILLQVPTTTITVSSSTILLQITTTPITITTPSLLLSLSTSTREVSSSSILLQLTSPTRKITSSSSIHLWFSATTSPLLSSWKSLAIFHNHSNFSFSHKISDGFLRRRLIVPCSNAINKMFNFAIERLIPSDLDHFASASLVSLLHIVLCVSSRGKWLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="87519" e_stop="87343"/>
            <exon e_start="87267" e_stop="86818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.928"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="87519" e_stop="87343" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87342" i_stop="87268" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="87267" e_stop="86818" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87519" stop="87343"/>
              <exon start="87267" stop="86818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCCTACTACTACAAGTCTCCTCCACCACCATCACCATCACCCCCACCTCCCTACTACTACAA : GTCTCCTCCACCACCATCACCATCACCCCCACCTCCATACTACTACAAATCACCACCACCACCATCCCCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTA</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  V  S  S  T  T  I  T  I  T  P  T  S  L  L  L  Q  V  S  S  T  T  I  T  I  T  P  T  S  L  L  L  Q  :  V  S  S  T  T  I  T  I  T  P  T  S  I  L  L  Q  I  T  T  T  T  I  P  I  T  S  T  S  L  L  L  Q  V  S  S  T  T  I  A  I  S  S  S  T  I  L  L  Q  V  P  T  T  T  I  T  V  S  S  S  T  I  L  L  Q  I  T  T  T  P  I  T  I  T  T  P  S  L  L  L  S  L  S  T  S  T  R  E  V  S  S  S  S  I  L  L  Q  L  T  S  P  T  R  K  I  T  S  S  S  S  I  H  L  W  F  S  A  T  T  S  P  L  L  S  S  W  K  S  L  A  I  F  H  N  H  S  S  K  L  N  F  T  L  K  C  L  C  *  F  Y  L </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K :   S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  H  S  P  P  P  P  V  K  S  P  P  P  P  Y  Y  Y  S  S  P  P  P  P  V  K  S  P  P  P  P  V  Y  I  Y  G  S  P  P  P  P  V  H  Y  *  A  V  G  K  A  W  P  F  S  T  T  T  Q  V  S  *  I  L  L  *  N  V  F  V  S  F  T   </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  L  L  H  H  H  H  H  H  P  H  L  P  T  T  T  S  L  L  H  H  H  H  H  H  P  H  L  P  T  T  T   : S  L  L  H  H  H  H  H  H  P  H  L  H  T  T  T  N  H  H  H  H  H  P  H  H  L  H  L  P  I  T  T  S  L  L  H  H  H  R  H  L  L  L  H  H  T  T  T  S  P  H  H  H  H  H  R  L  L  L  H  H  T  T  T  N  H  H  H  P  H  H  H  H  H  P  L  P  T  T  I  T  L  H  L  H  P  *  S  L  L  L  L  H  T  T  T  A  H  L  P  H  P  *  N  H  L  L  L  Q  Y  T  S  M  V  L  R  H  H  Q  S  T  T  K  Q  L  E  K  L  G  H  F  P  Q  P  L  K  *  V  E  F  Y  F  K  M  S  L  L  V  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87519" stop="87343"/>
                    <exon start="87267" stop="86827"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFLVSSTTITITPTSLLLQVSSTTITITPTSLLLQVSSTTITITPTSILLQITTTTIPITSTSLLLQVSSTTIAISSSTILLQVPTTTITVSSSTILLQITTTPITITTPSLLLSLSTSTREVSSSSILLQLTSPTRKITSSSSIHLWFSATTSPLLSSWKSLAIFHNHSSKLNFTLKCLC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="92753" PGL_stop="88016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92753" e_stop="92654"/>
            <exon e_start="92306" e_stop="92232"/>
            <exon e_start="92101" e_stop="92010"/>
            <exon e_start="91941" e_stop="91867"/>
            <exon e_start="89250" e_stop="89153"/>
            <exon e_start="89054" e_stop="88979"/>
            <exon e_start="88248" e_stop="88016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.433" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.696" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92753" e_stop="92654" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92653" i_stop="92307" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92306" e_stop="92232" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.883">
            <gDNA_intron_boundary i_start="92231" i_stop="92102" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92101" e_stop="92010" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.883">
            <gDNA_intron_boundary i_start="92009" i_stop="91942" i_length="68"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91941" e_stop="91867" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.433" acc_prob="0.680">
            <gDNA_intron_boundary i_start="91866" i_stop="89251" i_length="2616"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89250" e_stop="89153" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.696">
            <gDNA_intron_boundary i_start="89152" i_stop="89055" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89054" e_stop="88979" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.878" acc_prob="0.874">
            <gDNA_intron_boundary i_start="88978" i_stop="88249" i_length="730"/>
          </intron>
          <exon e_serial="7" e_score="0.974">
            <gDNA_exon_boundary e_start="88248" e_stop="88016" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92753" stop="92654"/>
              <exon start="92306" stop="92232"/>
              <exon start="92101" stop="92010"/>
              <exon start="91941" stop="91867"/>
              <exon start="89250" stop="89153"/>
              <exon start="89054" stop="88979"/>
              <exon start="88248" stop="88079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92751" stop="92654"/>
              <exon start="92306" stop="92232"/>
              <exon start="92101" stop="92010"/>
              <exon start="91941" stop="91867"/>
              <exon start="89250" stop="89153"/>
              <exon start="89054" stop="88979"/>
              <exon start="88248" stop="88065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92723" stop="92654"/>
              <exon start="92306" stop="92232"/>
              <exon start="92101" stop="92010"/>
              <exon start="91941" stop="91867"/>
              <exon start="89250" stop="89153"/>
              <exon start="89054" stop="88979"/>
              <exon start="88248" stop="88024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351463" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92696" stop="92654"/>
              <exon start="92306" stop="92232"/>
              <exon start="92101" stop="92010"/>
              <exon start="91941" stop="91867"/>
              <exon start="89250" stop="89153"/>
              <exon start="89054" stop="88979"/>
              <exon start="88248" stop="88144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92696" stop="92654"/>
              <exon start="92306" stop="92232"/>
              <exon start="92101" stop="92010"/>
              <exon start="91941" stop="91867"/>
              <exon start="89250" stop="89153"/>
              <exon start="89054" stop="88979"/>
              <exon start="88248" stop="88171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89245" stop="89153"/>
              <exon start="89054" stop="88979"/>
              <exon start="88248" stop="88016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349993" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGCTTAGAAAAGAAGAAAAACAAGAGTAAGAGCGCAGCTGAATATCATTTGCGGGGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTG : GAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAA : AGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAAT : ATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAG : GGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGG : TTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTG : CTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAGTTCTGAAGTAGCAAATCTTGTTATCAAGTTTTCTTATACTATCCTATCCCCTGTTTTCTCTAC</gDNA_template>
            <first_frame> L  C  L  E  K  K  K  N  K  S  K  S  A  A  E  Y  H  L  R  G  T  H  L  N  C  *  E  K  V  V  N  L  S   : G  R  Y  C  N  S  D  F  R  K  R  H  T  S  S  E  M  T  Y  E  L  D  E  Q  K   : K  V  G  L  G  L  I  G  F  G  I  F  F  T  F  L  A  I  M  L  F  F  D  R  G  L  L  A  L  A  N  :  I  L  L  L  A  G  V  A  L  L  L  G  L  R  S  T  L  Q  L  F  K  V  N  Y  K  :  G  T  I  S  F  M  L  G  L  F  L  I  F  V  R  W  P  V  V  G  I  I  V  E  I  Y  G  C  I  I  L  F  G :   C  F  W  P  S  I  K  V  F  L  F  Q  I  P  V  F  G  W  I  L  Q  Y  P  A  L  :  L  L  D  R  F  R  S  *  L  T  D  L  S  T  P  V  I  L  F  V  K  E  E  E  Y  T  E  L  G  L  F  V  M  *  C  R  L  L  S  P  L  S  S  N  V  Y  *  M  L  I  R  I  I  I  I  I  S  S  E  V  A  N  L  V  I  K  F  S  Y  T  I  L  S  P  V  F  S   </first_frame>
            <second_frame>  C  A  *  K  R  R  K  T  R  V  R  A  Q  L  N  I  I  C  G  E  P  I  *  I  V  E  R  R  W  *  I  *  V  :  E  D  I  A  T  L  I  S  E  R  D  T  L  A  A  R  *  H  M  N  *  M  N  K  K  :  R  L  G  *  V  S  L  D  L  A  S  F  S  L  F  L  P  *  C  C  S  S  T  G  V  C  L  R  W  Q  I :   Y  F  C  *  Q  V  *  H  F  C  W  V  C  V  L  H  Y  S  S  S  K  *  T  T  R :   A  Q  Y  H  L  C  L  G  S  F  S  Y  L  F  A  G  Q  L  W  V  S  L  W  K  Y  M  D  A  L  F  S  S   : V  V  S  G  H  P  S  R  F  F  F  S  R  F  L  Y  L  D  G  F  C  S  I  L  P  C :   F  L  T  A  F  V  A  D  *  L  I  C  L  L  Q  L  S  C  L  *  K  R  K  N  I  L  S  *  G  C  L  S  C  D  A  D  C  C  H  L  Y  L  Q  M  Y  I  R  C  *  L  G  L  *  *  S  S  V  L  K  *  Q  I  L  L  S  S  F  L  I  L  S  Y  P  L  F  S  L  </second_frame>
            <third_frame>   V  L  R  K  E  E  K  Q  E  *  E  R  S  *  I  S  F  A  G  N  P  S  E  L  L  R  E  G  G  E  S  K  W :   K  I  L  Q  L  *  F  Q  K  E  T  H  *  Q  R  D  D  I  *  I  R  *  T  K  K :   G  W  V  R  S  H  W  I  W  H  L  F  H  F  S  C  H  N  V  V  L  R  Q  G  F  A  C  A  G  K   : Y  T  F  V  S  R  C  S  T  S  V  G  F  A  F  Y  I  T  A  L  Q  S  K  L  Q   : G  H  N  I  I  Y  A  W  A  L  S  H  I  C  S  L  A  S  C  G  Y  H  C  G  N  I  W  M  H  Y  S  L  R  :  L  F  L  A  I  H  Q  G  F  S  F  P  D  S  C  I  W  M  D  S  A  V  S  C  P   : A  S  *  P  L  S  *  L  T  D  *  F  V  Y  S  S  Y  P  V  C  K  R  G  R  I  Y  *  A  R  V  V  C  H  V  M  Q  I  A  V  T  F  I  F  K  C  I  L  D  V  D  *  D  Y  N  N  H  Q  F  *  S  S  K  S  C  Y  Q  V  F  L  Y  Y  P  I  P  C  F  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92675" stop="92654"/>
                    <exon start="92306" stop="92232"/>
                    <exon start="92101" stop="92010"/>
                    <exon start="91941" stop="91867"/>
                    <exon start="89250" stop="89153"/>
                    <exon start="89054" stop="88979"/>
                    <exon start="88248" stop="88225"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKVVNLSGRYCNSDFRKRHTSSEMTYELDEQKKVGLGLIGFGIFFTFLAIMLFFDRGLLALANILLLAGVALLLGLRSTLQLFKVNYKGTISFMLGLFLIFVRWPVVGIIVEIYGCIILFGCFWPSIKVFLFQIPVFGWILQYPALLLDRFRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 406 chains have been computed
$ 
$ memory statistics:
$ 792712 bytes spliced alignments in total
$ 295 spliced alignments have been stored
$ 2687 bytes was the average size of a spliced alignment
$ 30992 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 2213 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 462 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 08:32:58
-->
