<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-18 08:33:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342195" ref_strand="-" ref_description="SGN-U342195        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to sucrose synthase GI:6682841 from (Citrus unshiu) | chr4:994927-998963 FORWARD | Aliases: T2H3.8, T2H3_8(evalue: 6e-98, score=353) genbank/nr: gi|29289943|gb|AAO67719.1| sucrose synthase [Solanum tuberosum](evalue: 9e-122, score=439)">
      <seq>aaagaaatccaatgatagagaagaaatagcagaaattgagaagatgcatgctcttatgaaggaacataacttggatggtcaattcagatggatatcagcccaaatgaaccgggcacgtaatggtgagctctatcgctatatagctgacaagagaggtatatttgttcagcctgcgtattatgaagcgtttggactgacggtggttgaagctatgacttgtggtcttccaacatttgcaacttgtcatggtggacctatggagatcattcaggacggtgtatccgggtaccatatagatccttatcatcccaataaagctgctgagctcatggtagaattcttccaacgatgcgaacaaaatcctactcactgggaaaatatatctgcatctggcctacaaaggattctcgacaggtatacatggaaaatttactcggagaggctgatgactttggctggtgtatatggtttctggaagcttgtttcaaaactcgagaggcgtgaaactagacgatacctcgagatgttctacattctcaagttccgtgagttggtaaaatctgttcctctagcagttgatgagaagcagtgaggattttgcaaaggaataaataacgtggagcataccactctatctatgataattttttttttgttcttcttgtttgttgtgtagttaaactaattaagtgcactgagtttctaatagatctcaaatagctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="11574" stop="9997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11274" g_stop="11106" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11105" i_stop="11009" i_length="97">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11008" g_stop="10764" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="414" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10763" i_stop="10698" i_length="66">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10697" g_stop="10559" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="553" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10558" i_stop="10469" i_length="90">
            <donor d_prob="0.685" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10468" g_stop="10288" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="734" r_length="181" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U342195" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11274" e_stop="11106"/>
          <exon e_start="11008" e_stop="10764"/>
          <exon e_start="10697" e_stop="10559"/>
          <exon e_start="10468" e_stop="10288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAATCCAATGATAGAGAAGAAATAGCAGAAATTGAGAAGATGCATGCTCTTATGAAGGAACATAACTTGGATGGTCAATTCAGATGGATATCAGCCCAAATGAACCGGGCACGTAATGGTGAGCTCTATCGCTATATAGCTGACAAGAGAGGTATATTTGTTCAGGTATGATGCTTGTATCGTATTGTTTCGATCATCTCCACTTTCATTCTCCTAGAGGTAGGTGGTTATCATGAAAAATATATACATATCTTCCTTTTAGCCTGCGTATTATGAAGCGTTTGGACTGACGGTGGTTGAAGCTATGACTTGTGGTCTTCCAACATTTGCAACTTGTCATGGTGGACCTATGGAGATCATTCAGGACGGTGTATCCGGGTACCATATAGATCCTTATCATCCCAATAAAGCTGCTGAGCTCATGGTAGAATTCTTCCAACGATGCGAACAAAATCCTACTCACTGGGAAAATATATCTGCATCTGGCCTACAAAGGATTCTCGACAGGTTTGTAGTTGTATATATTTGAATGGAAGCATTGCTCACTTTCTAATATTCAAACCATATTTAAAGGTATACATGGAAAATTTACTCGGAGAGGCTGATGACTTTGGCTGGTGTATATGGTTTCTGGAAGCTTGTTTCAAAACTCGAGAGGCGTGAAACTAGACGATACCTCGAGATGTTCTACATTCTCAAGTTCCGTGAGTTGGTGAGGTCCTTTTCAGCTCATATTCAATCAAAATAGAAATGCAGTTCAAGTGGTATATATACGCCGCTTAAACATGTCTCCTTTTTCCAGGTAAAATCTGTTCCTCTAGCAGTTGATGAGAAGCAGTGAGGATTTTGCAAAGGAATAAATAACGTGGAGCATACCACTCTATCTATGATAATTTTTTTTTTGTTCTTCTTGTTTGTTGTGTAGTTAAACTAATTAAGTGCACTGAGTTTCTAATAGATCTCAAATAGCTAAACGTTACTAT</genome_strand>
        <mrna_strand>AAAGAAATCCAATGATAGAGAAGAAATAGCAGAAATTGAGAAGATGCATGCTCTTATGAAGGAACATAACTTGGATGGTCAATTCAGATGGATATCAGCCCAAATGAACCGGGCACGTAATGGTGAGCTCTATCGCTATATAGCTGACAAGAGAGGTATATTTGTTCAG.................................................................................................CCTGCGTATTATGAAGCGTTTGGACTGACGGTGGTTGAAGCTATGACTTGTGGTCTTCCAACATTTGCAACTTGTCATGGTGGACCTATGGAGATCATTCAGGACGGTGTATCCGGGTACCATATAGATCCTTATCATCCCAATAAAGCTGCTGAGCTCATGGTAGAATTCTTCCAACGATGCGAACAAAATCCTACTCACTGGGAAAATATATCTGCATCTGGCCTACAAAGGATTCTCGACAG..................................................................GTATACATGGAAAATTTACTCGGAGAGGCTGATGACTTTGGCTGGTGTATATGGTTTCTGGAAGCTTGTTTCAAAACTCGAGAGGCGTGAAACTAGACGATACCTCGAGATGTTCTACATTCTCAAGTTCCGTGAGTTG..........................................................................................GTAAAATCTGTTCCTCTAGCAGTTGATGAGAAGCAGTGAGGATTTTGCAAAGGAATAAATAACGTGGAGCATACCACTCTATCTATGATAATTTTTTTTTTGTTCTTCTTGTTTGTTGTGTAGTTAAACTAATTAAGTGCACTGAGTTTCTAATAGATCTCAAATAGCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331270" ref_strand="+" ref_description="SGN-U331270        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative, strong similarity to sucrose synthase GI:6682841 from (Citrus unshiu) | chr4:994927-998963 FORWARD | Aliases: T2H3.8, T2H3_8(evalue: 6e-115, score=409) genbank/nr: gi|29289943|gb|AAO67719.1| sucrose synthase [Solanum tuberosum](evalue: 6e-130, score=465)">
      <seq>tatactggatcaagtgcgtgctttggaggccgaaatgcttcttagaataaagcaacaaggactcaacttcaagcctagaatccttgttgtcacccgactgatacctgatgctaaaggaaccacgtgcaaccagcggttggagagaattagtggaactgaatactcgcatattttacgtgtcccttttaggacagaaaatggaatccttcataaatggatatctaggtttgatgtatggccttacctggagaagtttactgaggacgtggcaggtgaaatgtctgctgagctccagggagtgcctgatctgattattggcaactacagtgatggaaatttagttgcctccctgttagcatataaaatgggcatcacacagtgtaccattgctcatgctttggagaaaacaaagtatcctgattctgacatctattggaaaaagtttgaggagaaatatcatttttcatgtcagtttactgctgacctactgtcaatgaatcattcagatttcataatcactagtacctatcaagagattgcaggaacgaagaatactgttggtcagtacgagagtcatactgctttcactctcccaggcctatatcgtgttgtccatggcattgatgtcttcgatcccaaattcaatatagtgtctcctggagctgacatgacaatttacttccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="14026" stop="11494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13726" g_stop="13639" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13638" i_stop="13556" i_length="83">
            <donor d_prob="0.511" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13555" g_stop="13382" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="262" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13381" i_stop="13071" i_length="311">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.106" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13070" g_stop="12954" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="379" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12953" i_stop="12856" i_length="98">
            <donor d_prob="0.857" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12855" g_stop="12689" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="546" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12688" i_stop="11933" i_length="756">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.169" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11932" g_stop="11794" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="685" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U331270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13726" e_stop="13639"/>
          <exon e_start="13555" e_stop="13382"/>
          <exon e_start="13070" e_stop="12954"/>
          <exon e_start="12855" e_stop="12689"/>
          <exon e_start="11932" e_stop="11794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTTCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAGAATCCTTGTTGTGAGTACATGTATGTTATGCAAACTCTAATTTGGTTTCTGGGATTGTATTTGACATAAATATGCTTTCTTTGATTGCAAAAGGTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCGCATATTTTACGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAGGTAACCTCTTTGTCTTTTGGAAATCACCGTTTGTTGCTGATGTTTGTTCAGTGTGCTAAAGTGAACGATGGCAACTAGTACAAATTGTGCGAACTTGAAGCCAACTGTTGTGTTTGCCAACATGTTGATAAATGGATAACTTTTGGTCATCATTTACATTTTTTGGTTTAACATACTGGATAACACACTTCTCGTGTCTTCCTGCGTATATATATTGGAAAATGACAATACTCGCCCTTCTATAATTTTTTAGGACCTTTCTGTGTACGGTAAATTTCCCAGCTGACATTTCCAAGTCAATTCTTGACCAGGACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTGCCTGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCTGTTAGCATATAAAATGGGCATCACACAGGTAGGAAAGACGTGATTATTTACCTGGCTAGCACAATGTCTTGAGGCTGTGTATCTGCAATACTAATTTAATACTTTTCTGCCACCTTTATTTCCCAGTGTACCATTGCTCATGCTTTGGAGAAAACAAAGTATCCTGATTCTGACATCTATTGGAAAAAGTTTGAGGAGAAATATCATTTTTCATGTCAGTTTACTGCTGACCTACTGTCAATGAATCATTCAGATTTCATAATCACTAGTACCTATCAAGAGATTGCAGGAACGTAAGTCATCTTAATTTGGCCCTGATTTTTTATTGAGTCCATTTTTAATTCAATAGCATGATTTGAGGAACTGTGATTGGTAACCTTGTCATATCTGTGAATTGTTCCACAATTTTATTTGTTATTGAAGAAACGATTTGAGCTTGTAATCAGATATAATTTGTCATGTTTGAGCTAGAACTTGTTTCATTATCTGTCGAGAGGATGATACTGTAACTATATTTTGTGTGTGGCAATTTACATTTCATCCGTCTATTTTTTATATATGTTTGGGCTTTTCTTCCTGCTGATCATGTTTACATGGCTGAAACTCAAAAAAGATATATGAACGCCTAGTTGATATTGTTGGATGCTTAAGAATCAGTAGATGTTTTGCTCCATGAATGACTAATGTTAATAAATAACAAGTGATATATATAGATGTGAATCATCTTGTAAGCAAGCGAAAAATGAACAGAAAAATGTAACATCCTCAATGGATTGTTCTGACTTGTAAAAAATTGTATCTAGAAATTGTTTCAGCTTGTAACCATATGTATGATGTTCCATACGGATGTGAACATTGATGTGCCATCGATCATGATCTGGATACTGAATCCTATATTGTAAACAATTTGGCTTGGCCATAATATTGTCTTTATAGTTCACGCAGATTGCTTAATTACACCACTATGTTTTACACGTTTAATATTCATGCGGCATAATGATGTTAAACATTAGATGGCTTGCTTGGAATCTGATAGCGGCTTGTTTCAGGAAGAATACTGTTGGTCAGTACGAGAGTCATACTGCTTTCACTCTCCCAGGCCTATATCGTGTTGTCCATGGCATTGATGTCTTCGATCCCAAATTCAATATAGTGTCTCCTGGAGCTGACATGACAATTTACTTCCCA</genome_strand>
        <mrna_strand>TATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTTCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAGAATCCTTGTT...................................................................................GTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCGCATATTTTACGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAG.......................................................................................................................................................................................................................................................................................................................GACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTGCCTGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCTGTTAGCATATAAAATGGGCATCACACAG..................................................................................................TGTACCATTGCTCATGCTTTGGAGAAAACAAAGTATCCTGATTCTGACATCTATTGGAAAAAGTTTGAGGAGAAATATCATTTTTCATGTCAGTTTACTGCTGACCTACTGTCAATGAATCATTCAGATTTCATAATCACTAGTACCTATCAAGAGATTGCAGGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATACTGTTGGTCAGTACGAGAGTCATACTGCTTTCACTCTCCCAGGCCTATATCGTGTTGTCCATGGCATTGATGTCTTCGATCCCAAATTCAATATAGTGTCTCCTGGAGCTGACATGACAATTTACTTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321459" ref_strand="+" ref_description="SGN-U321459        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | RelA/SpoT protein, putative (RSH1), identical to RSH1 (RelA/SpoT homolog) (Arabidopsis thaliana) GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins | chr4:985233-991494 FORWARD | Aliases: None(evalue: 7e-40, score=160) genbank/nr: gi|30268666|dbj|BAC76004.1| RelA-SpoT like protein RSH1 [Nicotiana tabacum](evalue: 1e-53, score=212)">
      <seq>ggaaacataataagtgcatgccagcataccaaatttgaaggccacaggggagacattgtcaccaaggaaatggtgttggcgaaatgataccttgctaacataccaaggtaccagggatgttctgcctggattagacggctggatggctagcaaagttgcaacttggcaaaacctggaagggcactctgttcagtggttttgtgttgtcagcatagatcgaaaaggcatgatggccgatattacttcagcattggcagctgtaggcgtcatcatatgttcttgtgcggctgagacggatagagggaagggaatcggtgtcgcgctatttcatattgaagccaacctagagagcttggttggtgcaagttcgaggattgacatgatcctgggtgttttgggatggtccacgggctgcagttggtcagagaacaaacagtttctagaatgctaatttagtggcctggtgaagagtagttgcccagctgttgaatgcttggggaagaaagttttgttcagtgaaacctgagttctgtttgacaagtatagaagcaagcaatataggttatatggtgtagggcgactgtatataaaggaagagtagcaaccagttatacttgtaaaggaattttcaactatacgaactccaacaaaagtatgttacagttatacaaaataaatatattaaattatttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="20440" stop="17677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20140" g_stop="19922" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19921" i_stop="19236" i_length="686">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19235" g_stop="19174" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="286" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19173" i_stop="18471" i_length="703">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18470" g_stop="18402" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="355" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18401" i_stop="18320" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.755" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18319" g_stop="17978" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="697" r_length="342" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="712"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U321459" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20140" e_stop="19922"/>
          <exon e_start="19235" e_stop="19174"/>
          <exon e_start="18470" e_stop="18402"/>
          <exon e_start="18319" e_stop="17978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACATAATAAGTGCATG-CAGCATA-CAAATTTGAAGGCCACAGGGGAGACATTGTCA-CAAGGAAATGGTGTTGGCGAAATGATA-CTTGCTAACATACCAAGGTA-CAGGGATGTTCTGCCTGGATTAGACGGCTGGATGGCTAGCAAAGTTGCAACTTGGCAAAACCTGGAAGGGCACTCTGTTCAGTGGTTTTGTGTTGTCAGCATAGATCGAAAAGGTAATGTTTGGTTCAGAGGCTACTTATTGCAGATGAGCATCAAACTGGATAAGGCATCACCGCTCATCTATATTAGATGCATTTGCGAACTCTGCTATGTATTGGTGGTTCTAAGTCCTTTGAAAAATCATTACCACTAGCACTGCTAGTATTTGTTTTTCGCCTTTTGCTTAGGCATTTGGTAGCCGAAACCTACTGCTAGGCCTGAAATGTTCCCAACCAACAGGTTCTAACATTCCTAGGGATCTAATCCAAGACCTTTAGTTAAGTGTGGAAAGATCTTAGCCCACTACATCACACCCCTTGTGAGAGAGGTTTGTCAGAATTACGTATTTAATATCTTGACTTCCTCGAAGGAGCAAATTTTCAAGTTCAAAAGAATGACATCAAAGTTTTGAATAACCAGAGAAGTGTGTGAGAGTATGTCGGGGTGGGGGTGGGGGGGGGGGGAGGCGGGATTCCATCGATGTAGAAGATCTAACTTTCTGTTCTTTTTTGTCTTTGATGTATTTTGTATAGTTCTGACTACATGTTTCCAGTTTATTAACCTTATATGTTCATTTGCATATGCACATTATGTATGACCTGGTTATTGGTTGACTAGTAGCAATATTAATATGTAGCCAACATTTTTCATGGTTTACTACTTGTCATGGCTGACATCTCAAACCACTACAATTATTTAGGCATGATGGCCGATATTACTTCAGCATTGGCAGCTGTAGGCGTCATCATATGTTCTTGTGCGGTGAGTTGGAACATTTATCATATCATTTTTCATCTAGGCTCGAACTCCTGAGCTATTCATATTGATAAATTTTAATATGGTCTGGGTTGACTGTGAAACTGTCTACATTGAGATCTGAACCTAGCTTACATTTGTGAAAATTTTCAATATTTGTTTAATATTAAATAACGGAACCTTGATTCACACCTTTCTTAGCTAGCTATATTAGGCAGTTTGTGACAAAGTATGTGACACTGTTAGCTCTTTAATCTTTATATTACTTCAGCAATAACCAGCAGGAGGTAACAATGAGAACTGTGTCGAAAGAGGATCTTACAAGTTAAGTTAGTCAATTTGCTCTACTACTTGCGTCTTGGTGCAGTGGGAGAGCATACATAGCTTCTTTTTTTCTTGATATGCTGATGGCGAAATAAGAAGAAGATGAATGTCATACCTGGAGTGATTGAGAACATTGTGGAAGGGAAAGAAGTGCTTAGGATAAAAATAAGGAAATTCATGCTAACTGTTACTATGAGAGGACTGAAACAATTCTATCTATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAATTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAACTGCAGGCTGAGACGGATAGAGGGAAGGGAATCGGTGTCGCGCTATTTCATATTGAAGCCAACCTAGAGAGCTTGGTATGTCTTCTGAACATGCTTCACTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTTTATGAATTCTCAGCTCCCACAGGTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAC</genome_strand>
        <mrna_strand>GGAAACATAATAAGTGCATGCCAGCATACCAAATTTGAAGGCCACAGGGGAGACATTGTCACCAAGGAAATGGTGTTGGCGAAATGATACCTTGCTAACATACCAAGGTACCAGGGATGTTCTGCCTGGATTAGACGGCTGGATGGCTAGCAAAGTTGCAACTTGGCAAAACCTGGAAGGGCACTCTGTTCAGTGGTTTTGTGTTGTCAGCATAGATCGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGATGGCCGATATTACTTCAGCATTGGCAGCTGTAGGCGTCATCATATGTTCTTGTGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGACGGATAGAGGGAAGGGAATCGGTGTCGCGCTATTTCATATTGAAGCCAACCTAGAGAGCTTG..................................................................................GTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328529" ref_strand="+" ref_description="SGN-U328529        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ggcacgagattacattgcattcttcttttgagatattaccttttgagtattcattctgaaaaatgcacaaagatctaagcaattaaatagtcatattctcctcctgtttcaattatgttagaattctcaattgtgaggtgactgcattgttacttgaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="18937" stop="18177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18645" g_stop="18469" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U328529" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18645" e_stop="18469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCTATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAATTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAACTGCAGGC</genome_strand>
        <mrna_strand>GGCACGAGATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAATTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAAAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314761" ref_strand="+" ref_description="SGN-U314761        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | RelA/SpoT protein, putative (RSH1), identical to RSH1 (RelA/SpoT homolog) (Arabidopsis thaliana) GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins | chr4:985233-991494 FORWARD | Aliases: None(evalue: 8e-148, score=520) genbank/nr: gi|30268666|dbj|BAC76004.1| RelA-SpoT like protein RSH1 [Nicotiana tabacum](evalue: 0, score=674)">
      <seq>aataaatgaagtaaaccaaattgcacagcttcgaattattataaaaccaaagccttgtgtcggagttaggcccctttgcagtgcacagcagatatgctatcatctgcttggactagtacatggaatctggacacctatccctcgtgctatgaaagactacattgccacccctaagcctaatggctatcaaagtcttcatacaactgtgattccatttctttatgagagcatgtttcgtttggaggttcagataagaactgaagagatggacctcatagctgaaagaggcattgctgcacattatagtgggaaaggttttgtaaatggtttagttgggcatgttataaccaatgataaaagttctggagggaaaatagtctgccttaacaatgccaatattgctctcaggattggctggctgaatgcaattagggagtggcaagaagagttcgttggaaacatgagctctagggaatttgtggacactgttaccagagatctgttgggcagccgtgtatttgtgtttacacccggaggagagataaaacatctcccaaagggggctactgtcattgattatgcgtatatgatacacactgaaattggcaataaaatggtggctgctaaggtgaatggtaatcttgtcaagccaatgcatgtacttgcaaacgcagaagttgtagagattatcacttacaatggtctctccagcaagtctgctttcgagagacataaacagtggcttcaacatgcaaaaactcgttgcgcccggcataagattatgaaatttttgagagagcaagctgcactatcagcatctgaaataactgtggattcagttaaggaatttgctgctgagtctgaaggggatagcacagtggaagaattagcagattactcaaagggaaccaaacattcgtgggagaaaatcctcaagaatgttatggaggtatcatctgcaaggacaaatggtgaagatattttccaactccgtagtggtagtattcaaattcccaaggtaaatgggaaacataataagtgcatgcagcatacgagtttgaaggcactggggagacattgtcacaaggaaatggtgttggtgaaatgatacttgctaacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="23668" stop="19742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23368" g_stop="23341" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23340" i_stop="23249" i_length="92">
            <donor d_prob="0.324" d_score="0.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23248" g_stop="23186" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="91" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23185" i_stop="22706" i_length="480">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22705" g_stop="22649" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="148" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22648" i_stop="22562" i_length="87">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22561" g_stop="22460" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="250" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22459" i_stop="22128" i_length="332">
            <donor d_prob="0.758" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22127" g_stop="21969" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="409" r_length="159" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="21968" i_stop="21867" i_length="102">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="21866" g_stop="21735" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="541" r_length="132" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="21734" i_stop="21647" i_length="88">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21646" g_stop="21560" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="628" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21559" i_stop="21440" i_length="120">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21439" g_stop="21368" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="700" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21367" i_stop="20549" i_length="819">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="20548" g_stop="20462" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="787" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="20461" i_stop="20379" i_length="83">
            <donor d_prob="0.923" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20378" g_stop="20042" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="1123" r_length="336" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U314761" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>1124</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23368" e_stop="23341"/>
          <exon e_start="23248" e_stop="23186"/>
          <exon e_start="22705" e_stop="22649"/>
          <exon e_start="22561" e_stop="22460"/>
          <exon e_start="22127" e_stop="21969"/>
          <exon e_start="21866" e_stop="21735"/>
          <exon e_start="21646" e_stop="21560"/>
          <exon e_start="21439" e_stop="21368"/>
          <exon e_start="20548" e_stop="20462"/>
          <exon e_start="20378" e_stop="20042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAAGAAGTAAACCAAATTGCACAGGTCTTCTTTTGTGATAAGCCTGATAAATATGATAGAAAATGTTGCTTTATGTCTACTGGTATGTGTTGACTTTTATATATTTGGAATGCCAGCTTCGAATTATTATAAAACCAAAGCCTTGTGTCGGAGTTAGGCCCCTTTGCAGTGCACAGCAGGTAATGTGTTATGACAATGCCGATACAACTTTCTTTTGAAGTTGAATACTTTATTTGGTTTCCCGAAACTTCTAAGGTTGTCTTTTTTTTATTGGTAGAACTTGTAAGGTTGTTTATGACGTATATTATTCAAAGTTCTAGTGGATTTCAATTTCGAAACCTTTGACCAAAACAGCGGGAAGTGTACAACTTGTATTTCCTAACATTAAAGAGAAAAAAGGGCGGTGGGGGTGATGGTGGTATGGCATTTTGTTTGTGGAAACAGAGTTCATTAGATGTCACTTTGTGATCATGCATTTTGGTTTGAAATAAGATCGCTCAATAATGTGTTGTAAATCATATACAAATTGTACCTAAGTTTTATTCCTTTGGAAATTGAGCAGAAAGAATTACTAGTATAAATTAATAAATCAATACTGATTTTTGCACTTCTTTCTGTATACAGTATAGAGGTATCTCTGACATGTCTTTTCTGTATAGATATGCTATCATCTGCTTGGACTAGTACATGGAATCTGGACACCTATCCCTCGTGCTGTAAGTATTGGATAATGTATCTGCATCCCTTTCCTCTGTCATATGCTAATGGACTTTTGTCGCTCTATCTGTAACATTTTGCCACAGATGAAAGACTACATTGCCACTCCAAAGCCTAACGGCTATCAAAGTCTTCATACAACGGTGATTCCATTTCTTTATGAGAGCATGTTTCGTTTAGAGGTTCAGGTACACTCACAGCACCCCCAAAACTAAGGAATAATAAATATATCAGTTACTCCCTCTATTCCAATATGTATGTCCCACCTATTTAATTATGTACCAAAATGTTTGACAGCATTCTATCTCTACAAAATTTCAATTTCAAGAATCCAAATACATTGCACTCTTCAAATTTGAACTCTCTTTTGATGTTCCCAATCAAACTAATGTTTCAGTCATTATTGTAATATTTTACTTTCTGATTTTATGAATTTGCCTCTGGTTCATTGACAAGTCAGCACTTATTTGTTTCTGATTATTGTCGAGCAACTTGATTATACTTGCATAATGTTTGGCAGATTAGAACTGAAGAGATGGACCTCATAGCTGAGAGAGGCATTGCTGCACACTACAGTGGGAAAGGTTTTGTAAATGGTTTAGTTGGGCATGTTATAACCAATGATAAAAATTCTGGAGGGAAAATAGTCTGCCTTAACAATGCCAATATTGCTCTCAGGGTATAAAGTATATTGTTTTGCTAAACTGTCTAGTGCCTTAATAGCTGTGTGTGCTTCGTTTATAACTATTATTATGGGATAAAGTTCCTTTTTCTGATGTAGATTGGCTGGCTGAATGCAATTAGGGAGTGGCAAGAAGAGTTCGTTGGAAACATGAGTTCTAGGGAATTTGTGGACACTATTACCAGAGATCTGTTGGGCAGTCGTGTCTTTGTGTTTACACCTGGAGGAGAGGTAACTTTGTTGTGTTTTTCTACTCAATTTGTTACCCTTTTTTTGAGTCCTGTTACATCATAGCTATACCACTTTACTATATTTGCAGATAAAACATCTCCCAAAGGGGGCTACTGTCATTGATTATGCGTATATGATACACACTGAAATTGGCAATAAAATGGTGGCTGCTAAGGTCTCAATCTTGTTACTATAGTTCTTTTTAATAATATCTCGCCGTATAAAAAAAATCCCGTTCTCTGGGTTTTTAATGCTTCATGAATCTGGATGTGACTGCAGCATCTTCTGTTTGCAGGTGAATGGTAATCTTATCAAGCCAATGCATGTACTTGCAAACGCAGAAGTTGTAGAGATTATCACTTACAATGTTAGTTGCTATGAATTCTTAACCTTCTTTTGCCTATATTCTCTATCTTTCATTCTTTTTTGTCTTCCTTTTGTGGGCAGCCTAGGGCTTTCTACGTTTTTCATTGTTTTTGTCTTGCTGAGACCTCTACTCATGTCTCATATGTGTTGTAATTCTTAAAATTCTAGATATCAACTAAACCTTAATGCAGATAAAGGTCAGCTGTATTTAATATGTAAGCATGCATCTTTTTTTTGTTTTATCTTTCTTCTTAATCTTTCAGTTCTTGGACCACCCTCTTATGCTTATGACATATAAACTGGTCATGCTTTAACAGTGTATTACTGGCTAGGAGGGATAGTCTAGTAGTACAGGCCTCCACTACCAACCATAAGGTTGGAAGTCTGTGTCACCAATGAAGTGAGGTGGAAGTGGACCACTGTTGGGCTCTTGGGCAATGGTTTTTTGGGCTCGTGGTTTTTTTCTGGGTGGGGGGTTGAGGGTGGGATTACCAATTGCAAAAAAGTTCTGGGATATTCATTTAGGGTGTGTTTCGATGAAGGGAAACATTTTCATGTTTTTCCAATTTTCTCATGTTCGGTTGGTCAAATAATTTGTAAAACATTTTCTTTAGAAAAACAAGCTCCTTAAAATTGAGCAAAATGACTTTCATAATGGAAGTAAGGAAAACAAGTTGCACCTAGTGATATTTTAAAAAAATTTGTAGGTTGTCATCATTTGTTTCTTTCTATAAGCTCTGTAAATTTTTCTTGATGCATTGGAGTAATTAGTTCACCATGCTGGTAATTTACAAGCATCCGGCTATTTTCCTTTCTTCAGGGTCTCTCTAGCAAGTCTGCTTTCGAGAGACACAAACAGTGGCTTCAACATGCGAAAACTCGTTGTGCCCGACACAAAATTATGAAAGTATGTATCTCTGCGGAGTTAGAATGGAAATTTATCATGTACTGCTACTAAATTAACTGATGTGGAGCTCATCTTTTCTTTAGTTTTTGAGAGAGCAAGCTGCACTATCAGCATCTGAGATAACTGTGGATTCAGTTAAGGAATTTGCAGCTGAGTCTGAAGGGGATAGCACAGTGGAAAAATTAGCAGATTACTCTGAGGGAACCAAACATTCGTGGGAGAAAATCCTCAAAAATGTTATGGATGTATTATCTGCAAGGATGAGTGGTGAAAATATTTTCCAACTCCGTAGTGGTAGTATTCAAATTCCCAAGGTAAATGGGAAACATAATAAGTGCATGCAGCATACAAATTTGAAGGCCACAGGGGAGACATTGTCACAAGGAAATGGTGTTGGCGAAATGATACTTGCTAACATAC</genome_strand>
        <mrna_strand>AATAAATGAAGTAAACCAAATTGCACAG............................................................................................CTTCGAATTATTATAAAACCAAAGCCTTGTGTCGGAGTTAGGCCCCTTTGCAGTGCACAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTATCATCTGCTTGGACTAGTACATGGAATCTGGACACCTATCCCTCGTGCT.......................................................................................ATGAAAGACTACATTGCCACCCCTAAGCCTAATGGCTATCAAAGTCTTCATACAACTGTGATTCCATTTCTTTATGAGAGCATGTTTCGTTTGGAGGTTCAG............................................................................................................................................................................................................................................................................................................................................ATAAGAACTGAAGAGATGGACCTCATAGCTGAAAGAGGCATTGCTGCACATTATAGTGGGAAAGGTTTTGTAAATGGTTTAGTTGGGCATGTTATAACCAATGATAAAAGTTCTGGAGGGAAAATAGTCTGCCTTAACAATGCCAATATTGCTCTCAGG......................................................................................................ATTGGCTGGCTGAATGCAATTAGGGAGTGGCAAGAAGAGTTCGTTGGAAACATGAGCTCTAGGGAATTTGTGGACACTGTTACCAGAGATCTGTTGGGCAGCCGTGTATTTGTGTTTACACCCGGAGGAGAG........................................................................................ATAAAACATCTCCCAAAGGGGGCTACTGTCATTGATTATGCGTATATGATACACACTGAAATTGGCAATAAAATGGTGGCTGCTAAG........................................................................................................................GTGAATGGTAATCTTGTCAAGCCAATGCATGTACTTGCAAACGCAGAAGTTGTAGAGATTATCACTTACAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCTCCAGCAAGTCTGCTTTCGAGAGACATAAACAGTGGCTTCAACATGCAAAAACTCGTTGCGCCCGGCATAAGATTATGAAA...................................................................................TTTTTGAGAGAGCAAGCTGCACTATCAGCATCTGAAATAACTGTGGATTCAGTTAAGGAATTTGCTGCTGAGTCTGAAGGGGATAGCACAGTGGAAGAATTAGCAGATTACTCAAAGGGAACCAAACATTCGTGGGAGAAAATCCTCAAGAATGTTATGGAGGTATCATCTGCAAGGACAAATGGTGAAGATATTTTCCAACTCCGTAGTGGTAGTATTCAAATTCCCAAGGTAAATGGGAAACATAATAAGTGCATGCAGCATACGAGTTTGAAGG-CACTGGGGAGACATTGTCACAAGGAAATGGTGTTGGTGAAATGATACTTGCTAACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343694" ref_strand="+" ref_description="SGN-U343694        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | RelA/SpoT protein, putative (RSH1), identical to RSH1 (RelA/SpoT homolog) (Arabidopsis thaliana) GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins | chr4:985233-991494 FORWARD | Aliases: None(evalue: 2e-36, score=149) genbank/nr: gi|30268666|dbj|BAC76004.1| RelA-SpoT like protein RSH1 [Nicotiana tabacum](evalue: 2e-44, score=182)">
      <seq>ttaggcaaatgtttctttccatgacagaggaggtccgtgttataattgtcaaattagctgatagattacataacatgcgcactctttcacatatgcctccacacaagcagtctggaatagcaacagagacgctgcaggtttttgctcctttggcaaaacttctcggaatataccaaatcaagtcagagcttgaaaacttggcatttatgtatacaaatgctcaagactatgccagggtgcagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="26727" stop="25246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26427" g_stop="26396" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26395" i_stop="26322" i_length="74">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26321" g_stop="26244" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26243" i_stop="26164" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26163" g_stop="26092" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="182" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26091" i_stop="25609" i_length="483">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25608" g_stop="25546" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="245" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U343694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26427" e_stop="26396"/>
          <exon e_start="26321" e_stop="26244"/>
          <exon e_start="26163" e_stop="26092"/>
          <exon e_start="25608" e_stop="25546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGCAAATGTTTCTTTCCATGACAGAGGAGGTAATGCCTCTAATAACTTGCACAAATTTTGTTACTTTCTTCACAATCCCTTACTTCAAATGTTTATGTTTCAGGTCCGTGTTATAATTGTCAAATTAGCTGATAGATTACATAACATGCGCACTCTTTCACATATGCCTCCACACAAGCAGGTATATAGATGGTATTTTTTCCTTTTTCTGCCTGTTTCTATCTAATCTCTAACAATCTTGCTGCTCTATGTCCCCTTCAGTCTGGAATAGCAACAGAGACGCTGCAGGTTTTTGCTCCTTTGGCAAAACTTCTCGGAATATACCAAATCAAGGTTTCTCCTTAGTCTTACTTGCTTTGACATGCCTAAGATATGTCCCAAACTGAAAATTCCTTTTCTTCTTCCTTCCTTCTCGTGATTGGTTGTGTGGCCTTTAGAACTGTATAGCTGTTAATGTATATGAAGGATCTCATTTTCTTAATCTTTTTGCTGGATCTGCTTAATGATAGTAATGCTTGTGCATATTATAAGTGCTATGTAATCAAGATCTGCGAAGAGACAGATAATGCAGCTCAAGTGATTTTCATTCTAGTCCTCAGTTTATAAATTTTTGCATCTGCCATCTAGTAGCCTCCTTTATCCTAGATGGAATGGAACTGTGTTTCTTTTGCCTGGTGAGAGAGTTGGGGCTGGGTGGGTCACTTCCTTTGGAAGTTAAAGACGCTTGACATTTTGGACTAACTGTTGCTTGTTTCATTATGTACGGTTACTTTTCTTCCAACAAATATTCTAAACATGTGACTTCTCATCATGCAGTCAGAGCTTGAAAACTTGGCATTTATGTATACAAATGCTCAAGACTATGCCAGGGTGCAGCGC</genome_strand>
        <mrna_strand>TTAGGCAAATGTTTCTTTCCATGACAGAGGAG..........................................................................GTCCGTGTTATAATTGTCAAATTAGCTGATAGATTACATAACATGCGCACTCTTTCACATATGCCTCCACACAAGCAG................................................................................TCTGGAATAGCAACAGAGACGCTGCAGGTTTTTGCTCCTTTGGCAAAACTTCTCGGAATATACCAAATCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAGCTTGAAAACTTGGCATTTATGTATACAAATGCTCAAGACTATGCCAGGGTGCAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339848" ref_strand="+" ref_description="SGN-U339848        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | RelA/SpoT protein, putative (RSH1), identical to RSH1 (RelA/SpoT homolog) (Arabidopsis thaliana) GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins | chr4:985233-991494 FORWARD | Aliases: None(evalue: 7e-60, score=225) genbank/nr: gi|30268666|dbj|BAC76004.1| RelA-SpoT like protein RSH1 [Nicotiana tabacum](evalue: 3e-88, score=328)">
      <seq>ctaatttctctgaattctacaattttcgcccgaccgcaatcgcagcagcagtagctttgaatgctaatcatcttttgatcctcttcactcgctgtgattttaccatctctctccggccgaatatgtttatgtatctgttgcatctttgtatttccagacgaacgaggttttgttccggttcgcttgatttttcttaagcgcttgcttccaattcttcttctcttctgtgtaccgatgcttttaaatagacatggctactgctacttcaatgtcagtttctatcgaatgtgtgaatatatgtaagtcttggaaaggagatgtgagtggaagactcgactgtagtgcgttatcttgtgcctggaaggcaccaagagccttgactgggttccttgcaagcacaactcatcctactcagtgttcctctactccttttgggcgatatggaagacgagatcgtctccgccgatgtagatgttatgatgtggatgaacgctatcctgttgaagttctgcgaggggtccctggctcaatgcttctactatctgcttctagcaaatggaaattgtgttgctcttcatcattttcttcagagttgtatgaagagatatctcctgaaagtttgtgggaggatcttaaacctactatttcatatctttcttgcaaggaattggaattggttcgtaaggctttgaatcttgcttttgaggcacatgatggtcaaaagcgtcgtagtggcgagccctttattgttcacccagttgcagttgcacagatccttggacagcttgaattggattgggagtcggttgctgctgggttattacatgatactgtaaaagacacagatgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="30740" stop="26388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30481" g_stop="30213" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.829"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30212" i_stop="29521" i_length="692">
            <donor d_prob="0.929" d_score="0.94"/>
            <acceptor a_prob="0.726" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29520" g_stop="29327" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="469" r_length="194" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29326" i_stop="27792" i_length="1535">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27791" g_stop="27627" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="628" r_length="159" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27626" i_stop="27167" i_length="460">
            <donor d_prob="0.848" d_score="0.94"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27166" g_stop="27101" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="694" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27100" i_stop="26924" i_length="177">
            <donor d_prob="0.833" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26923" g_stop="26831" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="787" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26830" i_stop="26752" i_length="79">
            <donor d_prob="0.612" d_score="0.94"/>
            <acceptor a_prob="0.513" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26751" g_stop="26688" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="851" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U339848" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30481" e_stop="30213"/>
          <exon e_start="29520" e_stop="29327"/>
          <exon e_start="27791" e_stop="27627"/>
          <exon e_start="27166" e_stop="27101"/>
          <exon e_start="26923" e_stop="26831"/>
          <exon e_start="26751" e_stop="26688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTCTCTGAATTCCACAATGTTTGCCTGACTGCAATCGCAGCA--AGCAGCTCTGAATGCGAATCATCTTTTGATTACCTTTCACTCGCTGTGATTTT---A---CTCTCCGGCCGAATATGTTTATGTATCTGCTGCATCTTTGTGTTTCCAAACGAGCCAGTTTTTGTTCCGGTTGGCTTGAATTTCCTTAAGTGCCTGCGTTTCAATTCTTCTTCTCTACTGTGTACCGATGCTTTTGAATAGACATGGCTTTTGCTACTTCAATGTCAGGTAATCACTGCGATTATGAATTTCATTTCATTGTGCTAAAATGGTGTGTTAATCAATTGATACATACACCTTAATAATGATTTAGTCGAGCTCAGGCTATTTAGGTTACCTAAAGTTTATTTCATTCTACTGCTAAATAATTTGTGTTGCAAGGACAAAATTAGAGGTTTACAGTAGCTGGAGGTTCACTAAATATACTAATATACTTCTGGAGCTAATACGAATGATGTGTGAACATTCACGTGTCAGTCAATTGATACATACGCCTTAATTGCAAAATAGTTGAGCTCGGGTTATTTAAGTTATGCAAGTATATTTCATTCCACTGCTATACAATTTGTGTTGCAAGGGAAAATTAGAGGTTTTTCGTCTCTGGAGGTTCACTAAAGCTACTTATAATTACTCGCAGAGCTAACATGAATGAAGTTGATCCATTTATTAGTTTCATTTTGTGTGAATGGTGTGTCAATCAATTGATATATACACCTTAATTGTGAATTAGTCAAGCTCAGGTTATTTAGTTATGTGAAGTCTATTCCATTTGTTTTCATTCCATTGCTAAATGATTTGTTTTGCAATGAAAAAATAGATTTTCTTTTTGTAACTGGAGGTTCGCTAAATATACTGAAATTGCTCGTCAGACATTGGAGGTTACGTGAATGATGTATGAATTTGTTAAAATTTCAATGCAGTTTCTATCGAATGTATGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGTGTTATCTTGTGCCTGGAAGGCGCCAAGGGCCTTGACTGGGTTCCTTGCCAGCACAACTCATCCTTCTCAGTGTTCCTCTACTCCTTTTGAGCGATATGGAAGAACAGATCGTCTCCGCCGATGTGTAAGTTTACTCACCTCCCAACTTACACCTGTCTGAAATTAATCTCATTGTGTGAAAGAAAATTTGAGTCCAAAAGGCTTTATTTTAGTGAGAGTTAATGGTCAAAAACACACTTAAACATTTTGAATGAGTTCCGTACCTCAACTATCCATTGTTCTCTTTGTCTACCTAAACTATTTGTCCCTTTGTATGAAAACACACCTCAACTCTTCGTTGGCCAAATATTTGTTCCCAATCGACAACATGTGTGTGTAGACCAACTCAACATCGAGGTTGGTTTTAATAAAAAGGAGTGATGGTTAGGGTATGAAACTATCGAATAGATGATTGTTTAGGTAGCTTCATATAACAATGGATATTTGAGGTATGAAACTCACGAAGAAGTAATATCTTAGGTGTTCTTTTACCATTATCCCTTTAGCTTCAGATGCTTTGCTGCCTTGCACTTCAATAAAACTTGTCGGCCATTCACGTTTTGCCTGGGATAGTCACTTTTTTCTGGCGAGTCAGAGGATTGATTTGCTATGAATTGGTCTTTTTCTTTTTATGTTTGCTTTTGTTTATGGTTAAATTAATAGTCTTTGCTAGAGGAGTGTGTAGGAAATTTGGTGGTAACTGCAGCAGGTTTCATTCATTTATAAATAATCTTTTGCAAATTTAAATCCTTTATATTGCGTTACTTATCTGTGGAACATGTGGAGAAATCTGAGAATCCAATTCAGAACTTTAAGGCAACGGATGTAGTTGCAAAAGATTTATAGAGACTCACTTTAATGTCTTTGATACCCATTGTGGCATGTTTCTATATAGCTCAACAACCTTCCATATGTAACTCAATTTGGAGTTCACATGTAGACTTGAATTGGGACTTACAAATGTAAGATGAACTTCGTAAAGGTTGAGTTTGATATCATATAAAAGATTTTAAGCATCTAACTCGAAACCTTAAGGAGTCGTTTGGATTGTGCACTCATATATTCCTCGTGCGGCCTTTGGTTTTTTCTGTTTAAACCTAGCTAGGCTTGATGAATGAGGTAAGAAAAGGTAAAAAGAGAAGATTCTGTATCTTAAGAATTTCTTTTGTTGGTTAAAGTTTCAGTGGACCTTAATAGAGTGTTTTGTATGACAGAACTCATTTAATGTACCCCAACCAAATTGGAATTGAGATGTAATTGTGTGAAAGTTTCTGATATACAACATCTGCTCTTCTTCAACACTAATGCCTAACATAGCCTAGTGCTAAATGTCATAGAGATTCATAAAATGACACGTTAGAGAAATAGAAATGGGTATACTGTGCAAATACATGGATATGCCTTTGATTTTGGACCCTATATAGTTTGCCAAAACCCTTTTCTCGATAGCTGAGTTAATGAGTTTAAGCTTGATTCACGTAGACATGTATATTTTTCTTTGAGCACACATAATATATGTTTTTATTGAGAAGTTATACATAAATGTTTATAGTGATTTTCTTGAGAAGCAATGTTATATCTATCACATTCTTTTATCTTACTAGTTTTTACTTGTGGCAGAGATGTTATACTTCTGATATGGATGAACGCTACCCTGTTGAAGTTCTGCGAGGAGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAACTGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTCATTTGAAGAGATATCTCCTGAAAGTTTGTGGGAGGTTTGTGATCCTCTAGCTATAAATCATCTCTGATTCCTGGCATCATCGACAAAGCTTGGCTAAATATTTACTCTCCGTCATGATGAAAAGATCATGAATTGTGATAAATAGTTACTTTTGTTTGAAACTAGGATTTACCAGTTGTGAATAAGAAAAATTTTTCTGGAAGGAATCAATGGGAAATTTTAAACTGCTAAATGTTCTGACTAGAAGTAGAAAGCCCAATCCAGTCTCAGAACATGTAATTCACATTCTAATGTTGTTCTTTTCCCATACATAAAACTTTCATTTCTTTCAATGTTGAATCTAAAGCAGGTGCGGTCTTTAGTGTGCATTTCTTACTACATTAATTGAAGATACAGAACAACCTCTCACTTCTAAGTGCTTGAATTTTATGGTCATTGGCTAACAAGTGTATGCTATGTCAGTATCTTGCTAATGTCAGTTATCTGTTGTGCAGGATCTTAAACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTAATAAGGCTTTGAATGTAAGTATATTCCCATATCATCAACATTCAACATAATTGATCTTCTCCTCGGCTTTGAATTCCTTTCTCCTTTTGTCTTTGCAAGATAAGCATCTGTTACCAAATACTTGGTATGCCATAATCTCTATCTAAATCACTATATTAAAAGAAACTCTTATCTACCGGTCATTATTACAGCTTGCTTTTGAGGCACATGATGGTCAAAAGCGTCGTAGTGGAGAGCCCTTCATTATTCACCCAATTGCAGTTGCACAGATCCTTGGACAGCTTGTACGTTGTGTGGAACTATTGTACTCTTTTGGCTAGGAAGGGATAAACTGACTTTAACTTTTCTTTTCTCTATTTTGAGGAATTGGATTGGGAGTCGGTTGCTGCTGGGCTATTACATGATACTGTAGAAGACACAGATGTAG</genome_strand>
        <mrna_strand>CTAATTTCTCTGAATTCTACAATTTTCGCCCGACCGCAATCGCAGCAGCAGTAGCTTTGAATGCTAATCATCTTTTGA-TCCTCTTCACTCGCTGTGATTTTACCATCTCTCTCCGGCCGAATATGTTTATGTATCTGTTGCATCTTTGTATTTCCAGACGAACGAGGTTTTGTTCCGGTTCGCTTGATTTTTCTTAAGCGCTTGC-TTCCAATTCTTCTTCTCTTCTGTGTACCGATGCTTTTAAATAGACATGGCTACTGCTACTTCAATGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTATCGAATGTGTGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGCGTTATCTTGTGCCTGGAAGGCACCAAGAGCCTTGACTGGGTTCCTTGCAAGCACAACTCATCCTACTCAGTGTTCCTCTACTCCTTTTGGGCGATATGGAAGACGAGATCGTCTCCGCCGATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATG-T-TA----TGATGTGGATGAACGCTATCCTGTTGAAGTTCTGCGAGGGGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAAATGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTTGTATGAAGAGATATCTCCTGAAAGTTTGTGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTAAACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTCGTAAGGCTTTGAAT.................................................................................................................................................................................CTTGCTTTTGAGGCACATGATGGTCAAAAGCGTCGTAGTGGCGAGCCCTTTATTGTTCACCCAGTTGCAGTTGCACAGATCCTTGGACAGCTT...............................................................................GAATTGGATTGGGAGTCGGTTGCTGCTGGGTTATTACATGATACTGTAAAAGACACAGATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339849" ref_strand="+" ref_description="SGN-U339849        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | RelA/SpoT protein, putative (RSH1), identical to RSH1 (RelA/SpoT homolog) (Arabidopsis thaliana) GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins | chr4:985233-991494 FORWARD | Aliases: None(evalue: 2e-52, score=202) genbank/nr: gi|30268666|dbj|BAC76004.1| RelA-SpoT like protein RSH1 [Nicotiana tabacum](evalue: 9e-81, score=303)">
      <seq>ctgatttctctgaattccacaatgtttgcctgactgcaatcgcagcaagcagctctgaatgcgaatcatcttttgattacctttcactcgctgtgattttactctccggccgaatatgtttatgtatctgctgcatctttgtgtttccaaacgagccagtttttgttccggttggcttgaatttccttaagtgcctgcgtttcaattcttcttctctactgtgtaccgatgcttttgaatagacatggcttttgctacttcaatgtcagtttctatcgaatgtatgaatatatgtaagtcttggaaaggagatgtgagtggaagactcgactgtagtgtgttatcttgtgcctggaaggcgccaagggccttgactgggttccttgccagcacaactcatccttctcagtgttcctctactccttttgagcgatatggaagaacagatcgtctccgccgatgtagatgttatacttctgatatggatgaacgctaccctgttgaagttctgcgaggagtccctggctcaatgcttctactatctgcttctagcaactggaaattgtgttgctcttcatcattttcttcagagtcatttgaagagatatctcctgaaagtttgtgggaggatcttanacctactatttcatatctttcttgcaaggaattggaattggttaataaggctttgaattcattattacaacttgcttttgaagcacatgatggtcaaaagcgtcgtagtggagagcccttcattattcacccaattgcagttgcacagatccttggacagcttgaattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="30781" stop="26528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30481" g_stop="30213" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30212" i_stop="29521" i_length="692">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29520" g_stop="29327" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="463" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29326" i_stop="27792" i_length="1535">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27791" g_stop="27627" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="628" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27626" i_stop="27167" i_length="460">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27166" g_stop="27101" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="694" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27100" i_stop="26936" i_length="165">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26935" g_stop="26831" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="799" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26830" i_stop="26752" i_length="79">
            <donor d_prob="0.612" d_score="1.00"/>
            <acceptor a_prob="0.513" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26751" g_stop="26743" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="808" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U339849" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30481" e_stop="30213"/>
          <exon e_start="29520" e_stop="29327"/>
          <exon e_start="27791" e_stop="27627"/>
          <exon e_start="27166" e_stop="27101"/>
          <exon e_start="26935" e_stop="26831"/>
          <exon e_start="26751" e_stop="26743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTCTCTGAATTCCACAATGTTTGCCTGACTGCAATCGCAGCAAGCAGCTCTGAATGCGAATCATCTTTTGATTACCTTTCACTCGCTGTGATTTTACTCTCCGGCCGAATATGTTTATGTATCTGCTGCATCTTTGTGTTTCCAAACGAGCCAGTTTTTGTTCCGGTTGGCTTGAATTTCCTTAAGTGCCTGCGTTTCAATTCTTCTTCTCTACTGTGTACCGATGCTTTTGAATAGACATGGCTTTTGCTACTTCAATGTCAGGTAATCACTGCGATTATGAATTTCATTTCATTGTGCTAAAATGGTGTGTTAATCAATTGATACATACACCTTAATAATGATTTAGTCGAGCTCAGGCTATTTAGGTTACCTAAAGTTTATTTCATTCTACTGCTAAATAATTTGTGTTGCAAGGACAAAATTAGAGGTTTACAGTAGCTGGAGGTTCACTAAATATACTAATATACTTCTGGAGCTAATACGAATGATGTGTGAACATTCACGTGTCAGTCAATTGATACATACGCCTTAATTGCAAAATAGTTGAGCTCGGGTTATTTAAGTTATGCAAGTATATTTCATTCCACTGCTATACAATTTGTGTTGCAAGGGAAAATTAGAGGTTTTTCGTCTCTGGAGGTTCACTAAAGCTACTTATAATTACTCGCAGAGCTAACATGAATGAAGTTGATCCATTTATTAGTTTCATTTTGTGTGAATGGTGTGTCAATCAATTGATATATACACCTTAATTGTGAATTAGTCAAGCTCAGGTTATTTAGTTATGTGAAGTCTATTCCATTTGTTTTCATTCCATTGCTAAATGATTTGTTTTGCAATGAAAAAATAGATTTTCTTTTTGTAACTGGAGGTTCGCTAAATATACTGAAATTGCTCGTCAGACATTGGAGGTTACGTGAATGATGTATGAATTTGTTAAAATTTCAATGCAGTTTCTATCGAATGTATGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGTGTTATCTTGTGCCTGGAAGGCGCCAAGGGCCTTGACTGGGTTCCTTGCCAGCACAACTCATCCTTCTCAGTGTTCCTCTACTCCTTTTGAGCGATATGGAAGAACAGATCGTCTCCGCCGATGTGTAAGTTTACTCACCTCCCAACTTACACCTGTCTGAAATTAATCTCATTGTGTGAAAGAAAATTTGAGTCCAAAAGGCTTTATTTTAGTGAGAGTTAATGGTCAAAAACACACTTAAACATTTTGAATGAGTTCCGTACCTCAACTATCCATTGTTCTCTTTGTCTACCTAAACTATTTGTCCCTTTGTATGAAAACACACCTCAACTCTTCGTTGGCCAAATATTTGTTCCCAATCGACAACATGTGTGTGTAGACCAACTCAACATCGAGGTTGGTTTTAATAAAAAGGAGTGATGGTTAGGGTATGAAACTATCGAATAGATGATTGTTTAGGTAGCTTCATATAACAATGGATATTTGAGGTATGAAACTCACGAAGAAGTAATATCTTAGGTGTTCTTTTACCATTATCCCTTTAGCTTCAGATGCTTTGCTGCCTTGCACTTCAATAAAACTTGTCGGCCATTCACGTTTTGCCTGGGATAGTCACTTTTTTCTGGCGAGTCAGAGGATTGATTTGCTATGAATTGGTCTTTTTCTTTTTATGTTTGCTTTTGTTTATGGTTAAATTAATAGTCTTTGCTAGAGGAGTGTGTAGGAAATTTGGTGGTAACTGCAGCAGGTTTCATTCATTTATAAATAATCTTTTGCAAATTTAAATCCTTTATATTGCGTTACTTATCTGTGGAACATGTGGAGAAATCTGAGAATCCAATTCAGAACTTTAAGGCAACGGATGTAGTTGCAAAAGATTTATAGAGACTCACTTTAATGTCTTTGATACCCATTGTGGCATGTTTCTATATAGCTCAACAACCTTCCATATGTAACTCAATTTGGAGTTCACATGTAGACTTGAATTGGGACTTACAAATGTAAGATGAACTTCGTAAAGGTTGAGTTTGATATCATATAAAAGATTTTAAGCATCTAACTCGAAACCTTAAGGAGTCGTTTGGATTGTGCACTCATATATTCCTCGTGCGGCCTTTGGTTTTTTCTGTTTAAACCTAGCTAGGCTTGATGAATGAGGTAAGAAAAGGTAAAAAGAGAAGATTCTGTATCTTAAGAATTTCTTTTGTTGGTTAAAGTTTCAGTGGACCTTAATAGAGTGTTTTGTATGACAGAACTCATTTAATGTACCCCAACCAAATTGGAATTGAGATGTAATTGTGTGAAAGTTTCTGATATACAACATCTGCTCTTCTTCAACACTAATGCCTAACATAGCCTAGTGCTAAATGTCATAGAGATTCATAAAATGACACGTTAGAGAAATAGAAATGGGTATACTGTGCAAATACATGGATATGCCTTTGATTTTGGACCCTATATAGTTTGCCAAAACCCTTTTCTCGATAGCTGAGTTAATGAGTTTAAGCTTGATTCACGTAGACATGTATATTTTTCTTTGAGCACACATAATATATGTTTTTATTGAGAAGTTATACATAAATGTTTATAGTGATTTTCTTGAGAAGCAATGTTATATCTATCACATTCTTTTATCTTACTAGTTTTTACTTGTGGCAGAGATGTTATACTTCTGATATGGATGAACGCTACCCTGTTGAAGTTCTGCGAGGAGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAACTGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTCATTTGAAGAGATATCTCCTGAAAGTTTGTGGGAGGTTTGTGATCCTCTAGCTATAAATCATCTCTGATTCCTGGCATCATCGACAAAGCTTGGCTAAATATTTACTCTCCGTCATGATGAAAAGATCATGAATTGTGATAAATAGTTACTTTTGTTTGAAACTAGGATTTACCAGTTGTGAATAAGAAAAATTTTTCTGGAAGGAATCAATGGGAAATTTTAAACTGCTAAATGTTCTGACTAGAAGTAGAAAGCCCAATCCAGTCTCAGAACATGTAATTCACATTCTAATGTTGTTCTTTTCCCATACATAAAACTTTCATTTCTTTCAATGTTGAATCTAAAGCAGGTGCGGTCTTTAGTGTGCATTTCTTACTACATTAATTGAAGATACAGAACAACCTCTCACTTCTAAGTGCTTGAATTTTATGGTCATTGGCTAACAAGTGTATGCTATGTCAGTATCTTGCTAATGTCAGTTATCTGTTGTGCAGGATCTTAAACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTAATAAGGCTTTGAATGTAAGTATATTCCCATATCATCAACATTCAACATAATTGATCTTCTCCTCGGCTTTGAATTCCTTTCTCCTTTTGTCTTTGCAAGATAAGCATCTGTTACCAAATACTTGGTATGCCATAATCTCTATCTAAATCACTATATTAAAAGAAACTCTTATCTACCGGTCATTATTACAGCTTGCTTTTGAGGCACATGATGGTCAAAAGCGTCGTAGTGGAGAGCCCTTCATTATTCACCCAATTGCAGTTGCACAGATCCTTGGACAGCTTGTACGTTGTGTGGAACTATTGTACTCTTTTGGCTAGGAAGGGATAAACTGACTTTAACTTTTCTTTTCTCTATTTTGAGGAATTGGAT</genome_strand>
        <mrna_strand>CTGATTTCTCTGAATTCCACAATGTTTGCCTGACTGCAATCGCAGCAAGCAGCTCTGAATGCGAATCATCTTTTGATTACCTTTCACTCGCTGTGATTTTACTCTCCGGCCGAATATGTTTATGTATCTGCTGCATCTTTGTGTTTCCAAACGAGCCAGTTTTTGTTCCGGTTGGCTTGAATTTCCTTAAGTGCCTGCGTTTCAATTCTTCTTCTCTACTGTGTACCGATGCTTTTGAATAGACATGGCTTTTGCTACTTCAATGTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTATCGAATGTATGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGTGTTATCTTGTGCCTGGAAGGCGCCAAGGGCCTTGACTGGGTTCCTTGCCAGCACAACTCATCCTTCTCAGTGTTCCTCTACTCCTTTTGAGCGATATGGAAGAACAGATCGTCTCCGCCGATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTTATACTTCTGATATGGATGAACGCTACCCTGTTGAAGTTCTGCGAGGAGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAACTGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTCATTTGAAGAGATATCTCCTGAAAGTTTGTGGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTTANACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTAATAAGGCTTTGAAT.....................................................................................................................................................................TCATTATTACAACTTGCTTTTGAAGCACATGATGGTCAAAAGCGTCGTAGTGGAGAGCCCTTCATTATTCACCCAATTGCAGTTGCACAGATCCTTGGACAGCTT...............................................................................GAATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333212" ref_strand="+" ref_description="SGN-U333212        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | spliceosome protein-related, contains Pfam domain, PF04938: Survival motor neuron (SMN) interacting protein 1 (SIP1) | chr1:20301632-20304575 REVERSE | Aliases: F20D21.20, F20D21_20(evalue: 3e-08, score=55.8) genbank/nr: gi|18404909|ref|NP_564657.1| expressed protein [Arabidopsis thaliana] gi|13430458|gb|AAK25851.1| unknown protein [Arabidopsis thaliana] gi|14532738|gb|AAK64070.1| unknown protein [Arabidopsis thaliana](evalue: 2e-06, score=55.8)">
      <seq>attaccatcatggcagacgatttcggttctcatgcttcttctgagttctccaacaccagagtctctgaaaattctaagaagcttaatgtgtgtgcctctgaaactcaagaatccaatacccatgatgaatccatcaagaaaaatgatgaagagaagaaagatgatgggtctgtgaggtgttcactcaagattgaagtaattgatgatacagcaatgattgatatttctcaagttggaaaaagttgctcaattgataaaaattttgatggaaaatctggaagaaataggaagaaaaagaatgcaaatcaaatggttacggttaaagcaaaagataggaaaatcgaagaaaagaatgtgaatggcggctgtaaaataaatggaggagaagagaagagggtttactgtagaaaggagttggaaaatttgaggtttgttggaatggaacaacagaggaaaatgtgggttgagctgtactgtgggcttggtgataccgtgcaaaaggagtatgatggcctcgttgactctaatacgcaaaagcacatccgcctgtctcgaagtcgcaggcacattggtaaagaaaatacccccgtcatttctggtgttttggcagcaaaagaacgaggaaaacatatgaaagtttatacacaaagaggcatgacatatatgaatctgcagaacactttatgtttacctggncattangtctttagtatttgtcccagttcgtgataaagggttgaaggaggaagcatttcctatcattgtccaatacctctgctgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="42190" stop="40357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41890" g_stop="41293" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41292" i_stop="40842" i_length="451">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40841" g_stop="40657" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="783" r_length="185" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U333212" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41890" e_stop="41293"/>
          <exon e_start="40841" e_stop="40657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCATCATGGCAGACGATTTCGGTTCTCATGCTTCTTCTGAGTTCTCCAACACCAGAGTCTCTGAAAATTCTAAGAAGCTTAATGTGTGTGCCTCTGAAACTCAAGAATCCAATACCCATGATGAATCCATCAAGAAAAATGATGAAGAGAAGAAAGATGATGGGTCTGTGAGGTGTTCACTCAAGATTGAAGTAATTGATGATACAGCAATGATTGATATTTCTCAAGTTGGAAAAAGTTGCTCAATTGATAAAAATTTTGATGGAAAATCTGGAAGAAATAGGAAGAAAAAGAATGCAAATCAAATGGTTACGGTTAAAGCAAAAGATAGGAAAATCGAAGAAAAGAATGTGAATGGCGGCTGTAAAATAAATGGAGGAGAAGAGAAGAGGGTTTACTGTAGAAAGGAGTTGGAAAATTTGAGGTTTGTTGGAATGGAACAACAGAGGAAAATGTGGGTTGAGCTGTACTGTGGGCTTGGTGATACCGTGCAAAAGGAGTATGATGGCCTCGTTGACTCTAATACGCAAAAGCACATCCGCCTGTCTCGAAGTCGCAGGCACATTGGTAAAGAAAATACCCCCGTCATTTCTGGTGCGTATTTTTGTCTTCCTTGTTGAATAGTGGTGGCGACCAATGCTGTTTTTTGTTCTTGATAGTATAATTTGCAGTGTTTCTGAAACTGACAGTAAAGATAACAATAATGGAGAAAAACAACTTATAAGGAAACAGTAGCAACCACAAAATAATGTGATACCCTAAACACAATCAACAAGAAGTGATGGTGGAATTAAAAGCAATACACTATAAGAATATGGCTTACCCCTCGAAAATTAAGTCAACAATCCATACCTACTAACCTTCTACCCTAATACCAACCTTCAGGCAAGTGCAAGTTTAGATGCAACTTTGGTGATATTGTGGATAATATACTCTTGACATCATATAATTACTCTATTTCTTGCCTTCATGCATTGTTTGCTTCCCTACACATTCTGTTGTGGTTGTTTCAATTTGATGGGTTCCTAAATTTCTGTTGGCACAGGTGTTTTGGCAGCAAAAGAACGAGGAAAACATATGAAAGTTTATACACAAAGAGGCATGACATATATGAATCTGCAGAACACTTTATGTTTACCTGGCCATTAGGTCTTTAGTATTGTCCCCAGTTCGTGATAAAGGGTTGAAGGAGGAAGCATTTCTAATCATTGTCCAATACCTCTGCTGTAC</genome_strand>
        <mrna_strand>ATTACCATCATGGCAGACGATTTCGGTTCTCATGCTTCTTCTGAGTTCTCCAACACCAGAGTCTCTGAAAATTCTAAGAAGCTTAATGTGTGTGCCTCTGAAACTCAAGAATCCAATACCCATGATGAATCCATCAAGAAAAATGATGAAGAGAAGAAAGATGATGGGTCTGTGAGGTGTTCACTCAAGATTGAAGTAATTGATGATACAGCAATGATTGATATTTCTCAAGTTGGAAAAAGTTGCTCAATTGATAAAAATTTTGATGGAAAATCTGGAAGAAATAGGAAGAAAAAGAATGCAAATCAAATGGTTACGGTTAAAGCAAAAGATAGGAAAATCGAAGAAAAGAATGTGAATGGCGGCTGTAAAATAAATGGAGGAGAAGAGAAGAGGGTTTACTGTAGAAAGGAGTTGGAAAATTTGAGGTTTGTTGGAATGGAACAACAGAGGAAAATGTGGGTTGAGCTGTACTGTGGGCTTGGTGATACCGTGCAAAAGGAGTATGATGGCCTCGTTGACTCTAATACGCAAAAGCACATCCGCCTGTCTCGAAGTCGCAGGCACATTGGTAAAGAAAATACCCCCGTCATTTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTTGGCAGCAAAAGAACGAGGAAAACATATGAAAGTTTATACACAAAGAGGCATGACATATATGAATCTGCAGAACACTTTATGTTTACCTGGNCATTANGTCTTTAGTATTTGTCCCAGTTCGTGATAAAGGGTTGAAGGAGGAAGCATTTCCTATCATTGTCCAATACCTCTGCTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335681" ref_strand="-" ref_description="SGN-U335681        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | UBX domain-containing protein, contains Pfam profile PF00789: UBX domain | chr2:17967788-17970804 FORWARD | Aliases: F14B2.15(evalue: 7e-23, score=63.5) genbank/nr: gi|20147205|gb|AAM10318.1| MFL8.1/MFL8.1 [Arabidopsis thaliana] gi|25090378|gb|AAN72288.1| At2g43210/MFL8.1 [Arabidopsis thaliana](evalue: 5e-21, score=63.5)">
      <seq>cagatttgggtttacacaataggcaagcactgataatcgttcttcgtaacaaagtggatgttacatcattgcatggtctaaacaatccggctgagagtaaccatacaacaattggaggcgatgcaggatattttgctacgatcagaaaactcttttcgtatgtaaatcctttatcttaccttggtggaagttctaacacatcaaacactgctcgagatagcatatggcaatatggggttggctatatgaagcattgctggctatttttctccattttgaattcatctaaggacaaacttatgcaaagtgaattgaaagcactagaagttcttttcattttctctagcgttatttgaagacaccttttccctgatttagtgcctgactttggactgtcagtgtaattgcttctccatgtgctaatatcgtacttcacactagcttttacagattaaataaagcaatgagtttgtaactgagcttttcaagatccattatcaggtgtatggaactgagtgttgttaaaaatgttctatttataaatggatgagataagggcataactcattgacagtgaggttcagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="44305" stop="42912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44005" g_stop="43772" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43771" i_stop="43565" i_length="207">
            <donor d_prob="0.780" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43564" g_stop="43212" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="587" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U335681" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335681" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44005" e_stop="43772"/>
          <exon e_start="43564" e_stop="43212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATGGTAGTTTCCTTTCCTTTCTTCTTGACCTCTGTGACAGCTTTACTGCTAGAGAATTAGAAATTAAGGATACGTTCAACAGATTGTATTACTTGCACTTTCTAAGATCAGCTTTCGAGTTGCTTGAATTTTTTTATAAGACTTGCATTAACAGGCACTTTACACCATCATGTTTTTGCTAATACAACAGCGTCGTTTCCAAACATGTAGGGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAA</genome_strand>
        <mrna_strand>CAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG...............................................................................................................................................................................................................GGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316459" ref_strand="+" ref_description="SGN-U316459        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | UBX domain-containing protein, contains Pfam profile PF00789: UBX domain | chr2:17967788-17970804 FORWARD | Aliases: F14B2.15(evalue: 6e-38, score=154) genbank/nr: gi|20147205|gb|AAM10318.1| MFL8.1/MFL8.1 [Arabidopsis thaliana] gi|25090378|gb|AAN72288.1| At2g43210/MFL8.1 [Arabidopsis thaliana](evalue: 5e-36, score=154)">
      <seq>ttttcggtaaaaaaaccgtttccacccttgtttgaaaagcattcattttagagttttggctcaaaattccgattgatcggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactactttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacagctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatcttgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacatttggaccctagtgatgaagctcctagagagattgcaaataaagcagggaaagaccccgagataaatatagttgaagatgcagctgctgagtcagatgattcgtcaaatatatttcatgatgtttgtttaaacattagattgcctgatggttcaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54559" stop="45908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54259" g_stop="54161" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="200" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="253" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="335" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49839" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="401" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117">
            <donor d_prob="0.617" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="469" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="676" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46562" g_stop="46208" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="1031" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U316459" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1030</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54259" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49839"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCGGT-AAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTT</genome_strand>
        <mrna_strand>TTTTCGGTAAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG.....................................................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335683" ref_strand="+" ref_description="SGN-U335683        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | UBX domain-containing protein, contains Pfam profile PF00789: UBX domain | chr2:17967788-17970804 FORWARD | Aliases: F14B2.15(evalue: 1e-05, score=48.1)">
      <seq>aggagttcagtagttagtgtgatctacaatggtagtgttctcgaagccatttaaaactttgtgaattctttcttggttgatgagtcttataattcggaaatcttgctgtcaatgccatgctgtctatgtgcacttttcatgtagatatacccttacatgagctacatagatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacggtatggatcagcttaatctaatgtttggtaataaaaaacatggcatgattagttgtttgagacgtaactgagttgttgcatctctttcttatctcttaattatgtatctaattttagggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactgctttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacatctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatattgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacatttggaccctagtgatgaagctcctaaagagattgcaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="50373" stop="46023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50073" g_stop="49654" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="627" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46562" g_stop="46323" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="867" r_length="240" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U335683" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50073" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAA</genome_strand>
        <mrna_strand>AGGAGTTCAGTAGTTAGTGTGATCTACAATGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTGCTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACATCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATATTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAAAGAGATTGCAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335684" ref_strand="+" ref_description="SGN-U335684        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | UBX domain-containing protein, contains Pfam profile PF00789: UBX domain | chr2:17967788-17970804 FORWARD | Aliases: F14B2.15(evalue: 2e-35, score=146) genbank/nr: gi|20147205|gb|AAM10318.1| MFL8.1/MFL8.1 [Arabidopsis thaliana] gi|25090378|gb|AAN72288.1| At2g43210/MFL8.1 [Arabidopsis thaliana](evalue: 2e-33, score=146)">
      <seq>ggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtatccacaggaggctatcccttgtattacagttattggatacaatggtgttcaactatggcaacacggtatggatcagcttaatctaatgtttgggggttttgtttctgctgaaaatcttgcatctagtcttgagaaggcgtggttaagtcttcatgttcaggatacaacaactgctttgttgactgctgcacttgcttcaaggaaagatcttgtatctggagcttcttctgtaacatctgaagtagggagttcttcaagtgctcaagtttcaccagctcaggcgattacacatattcaatctccattggctacactgtctaaaaactctcagatagtagagggagaggatcctggacatgctgctatggacatagattcctcgctgattgacatggattctcatggatcagcagatgcctttgaatctagaattggtgacttcaatgagtctaccactgtgatcacaacagcagaaaaaccacttgatattgtagaagtagattcaaacaagggtaaagatgaatgttcaatgtcaaaagagaatcctggtttgcgtgatcaacatttggaccctagtgatgaagctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54482" stop="46041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54182" g_stop="54161" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="122" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="175" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="52209" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="257" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49904" g_stop="49812" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="350" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49811" i_stop="49722" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49721" g_stop="49654" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="418" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46846" g_stop="46640" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="625" r_length="207" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="46562" g_stop="46341" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="847" r_length="222" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U335684" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54182" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="52209"/>
          <exon e_start="49904" e_stop="49812"/>
          <exon e_start="49721" e_stop="49654"/>
          <exon e_start="46846" e_stop="46640"/>
          <exon e_start="46562" e_stop="46341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTTTTATATCAATCATACATTTTGATTGGTTACAGAGTGGTGGGAGGTTCATGTTGTATGGGGAGGAGTACTAGCAGTTAAGAACTCTCATATTAATAGATAAAGAGTTGCGGAAATGCATATGTTGAGGTGGAAGTGTGTACATACTAGAAGAGGTAAGATTAGGAATGAAGATATTTGGGACAACATGAGGGAAGCGTGACTGAGATGGTTCATGCATGTGGAAGAGGAGGAGATGTGAAGATGCCCAGTCAGGAGGTGTGAACGGTTAGCTTTGGTGGGTTTAAGGAGAGATAGAGGTAGCCCATAGAAGAAGTATTTGGGAGAGGTGATTAGACAGTTTATTGCACATCTTTAATTTACCGTGGACATGACCTTAAATATTGGGATATGAACGTTGCAGATTAGGGTAAAAGGGGTTAGTATGTGCTGAACATTGTCTTGATATCTTGAGGGTTAGGCTTGGTAATAGTTTGGTAGCATTATTTTTTTTATCATTTCTTGTCCTATGATTTCTATTACTACCTGCCATTTCTCGTGCTTCAGTTATCGCATTATGTAGCTGTTGTTATTGTTCTTTGTTCTCTGAATGCATGGTAATGCTTTCCCTATAATTTTCTATGTGCTCTTTACTTTTGTATTTCTTTTTCATCGCTTGGACACTCTACCTCCACAAGGTATAGGGGTAAGGTTTGCATACACTCTACCCTTTCCATACCCCAATTGAGGGGTTACACTGGGTATATTGTTATTATTTGAAGAAACATACTGAGAGAAAGAAAGAAGAGGGATAGACTAGGCTTGATTATCATCTCGATGAACAGTATTGAGTAAGCAATTGTGTCTTTGACATAGTGAGGCTTAAATGGTACATGCCTAGAGATACTAAAAGTTTCTAGAGTGCTGGAACATCAGGGGAGAAACAAGAAGTAGAAATCGTGATACACTAATCCCTGCTTGTATATGTTGGTTTATTAGGTGGGAGAGATATGCAAAATGCTTTTAAGACGAAGAGAACTCTATGAAGAAGATCAAGGAACATTTTACTTTTATTTAGTTTTTTGGTGTAAACAGAATATCATTAGTGAAGCTGAGAAAGTGATCGACTGGATAGGATCTCTCTTGGAATAGACGGGACATACTTTTGCCCGACCTTTAAATACTTTTGATCGCACCTTCTTAATAATAGAATACCCATTCTAAAAAGAGAAACAATTGATGAAAGAACATTGAAAGAGGAAATGATGACTTATATAGTAAAAAATTTTGATAATACTTTCTCCGATGTGCTAACGTAGGTGGGCGTTCTGCACGAGGTCTGGTAAATAAAATAATTCAGGTGCATAAATGTAGAAGTTATTTCTTGTAACTGCGCATAATGTACTTCTCTATTCACCTTATTTTTGTATTCATATTCAAATGCATCTTTGTCAAGTGTGGAATGATTTGTATTTTCCAGGTACAAGTTCATCTTCTTTAATTGGATTTTCAGTATTCTAACTTCGAAGGGACAAAGACAATGGGAGAAGTAGAAAAAATGTTCATACATGGAGAGTTTCCGAAGTGCAAGTACTTCAATATGTATTAGAAATGCTCCTCTCTTAATAAATGTAAAACCTGCTTTAGTATGAAAACTAAGGATAGTATGAAAACTAAGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAGGTATTTCTAATGTCATATACGTGTTCTCCATGTAATTTTAATTCTGTCCCGTAGACATGATTCGATTTTCCTGATTTTGTTCCCATTAGTTATGATGAATTGTTTTACTAGGAAGACTATTAGCTTTATGTTGAGGAAATTGCAGGGGATCACTTGTTTTGCGCTGTTCTTTTAGACTTTTTAGACCACTAGACTTTGAGTGTGAGCAATTTCTAGAATTGTGACTAGTGTCAGATAACAACATACCCGGTGTAGTCCCACAAGTGAGGTGTGGGTAGGGTAAGATGTACATAGACTTTATTCCTACCTTTGCGATGTAGAGAGTATCTTCCTGATAAACCCTTGGCTCAAAAGAGAAGATATTCAAAGCAGGGTTACGAGTAAATTATGGGAACAAAATATCAAGATACAAACCAAATGAAGCAATATAATACTAAACGACATTGAAGCATAGGAACTACACGATTACTAAATGTTATTACCACTAATAAAAGGCTGCAAGTAGGTTATAGGTTATAGGGAGACATAGAATCTTTTATTGATGTTCTAGGATTTCTATAAGTAGGTTATAACTTAGTACATTTTCCTATATTTCCTTGTAAATATGGACAGCTGTAGTTTTTATGCAGCAAATAGTTATACAGAAAATGTTACCTTCTAAAAAGAAAAGGGTTGCAAGGAGATGGGGCTAGCCCCCAGCTTCTCTCCTCTAAGGAGCGACAAATCTGTGCTATCTGCTAAAAAAAAAAGCTTCCCTTTAAATGGGATAGGCAAAATTATTTTTGTGCGCCATCCAGAGTGGATTGTAGACTCTACTAGCTCTAAATCTTCAATGATATATGAAAGTTCTTTTACTTCTCTGAATATTCTCTTGCTGTTACTTCTTTTCATTGTATGTCTAGTGACATTAAAATCTCCATAAAATACTGAGGATTCACCAGATTCCCCCTTCCCCTAACAACAGCCACCTCACCACAGATGGACTCAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATCAACTTAAAACTGTGGTTTCTTTCTTCATCCTAGAGTTTACTTACAATTAAAATCTTTCAACCTACTTGTTTGAGATTTTGAGGATCCTTATTGGTATAGCTGGAAGAGGAGGAAATAATGGTGGGTATGCAATTAGAAACATTGAGTATTTGAGAAAATGTGCTGAAGTTGTTTGTAGAATTGAACTTCGGATGGTCAGATATTAGAGACAAAGTGTACCTTCTCTCTTATCTTACACTATGCATCTCCAAATGTCCAAAATTTCCAGCGACAATCTAGTTGGACATAGTAATGCGTTGAATCACAAATGAAACTTTGAGCAACTAGTTGGACAAAGTAATGTGAATACAAATGAGTTATCATGTTCTTATTAAATTGTTTTCTTTTGCAGGCAGAATTATTCCCGTTTCATAGATAAATTTTTAATTGTTTCATAATGAAGTAAGGTTGTGGGTTCAAGTCACCAAGGGAGAAACTTACCATATTAAAAAAAGTTATGTGCAGCATATGAAGTAATAATATATAAAATAGGCAGTCTGGCTAGTGGCTTCCAGGGAATTCAAGAGTCTAGAGTTAATTTATTCTACAACTCTGGTTGTTCTTTGGTCCTTCATGAGGTTTTACCATAGCCAAACATTTTATCTATTGTAGGTGCAATTTTCAATTACCAAATACTCTTCACTTCAAGAGCTTCAATTTTGTACAGTTTTTACCATCCATGACACACTATAATCTGTAAAGCCTTATAACCGTGGCCAAATAAAGTCATTTCCTTGAATCAAAATCTACAAAGCTCTTGACCATCAATCGAGTATTGCAATATAACAGAATTGCGGTTAGGGGTAGAATTTTCTTGAAAGATCAATTTCCCTTCTTTGGTTACAACTTTCTGCAATTCAGCTACTAAGATGTCTAGAGTCAGCTTCTAAGTTGCTACTCGTCTCCCTGCTAAACCAAAAGTAAATAAACCCGTCACTCTCTTGCCTCAGTATTCTTGTACCTCTTGTTTATCCTTGTCTCCTTTGCTGCTGTCTATCAGTTCAACCATTTGTTGGCAAGATGGATACTTGCCTAAGTTTCTCTGTGCCATTTTTCCTACTCTGTCTCGGTAATTTGAAGGATATTGAAGGATGAAAAAGTCCCACATTGGTTGAGGAATGGACTGGTAGTTTGCTTATATAGACTTGGGCAATCCTCCCTCATGAGCTAACTTTTGGGGTGTGAGTTAAGCCTAATAGCTAAATTTACATGATAACAGAGCAGGACCCATTTCGCCCAATGTTGGGCCTCCAAATTAAGTATGCCCACACACTAGATATCCAGCCTTTGGCGTGAGGTGAAGTGAGGTGTTAAAGAATGAAAAAGTCTCACATCAGTGGTTAATGAGATGGCAGGTCTCCTTGTAAGGCTTGGAAAATCCTCCTTCCTTTGAGCTAGATTTTGGGGTGTGAGTTAGGTCCAATACCTTATTTTACAAAGGAAAAATGCGAAGGTTGGATGTCGTTTTGCTAGCCGTTCCCTTTTACATTTTATTACTTCATAAACCTTGATTAGCACAATCTATTAAATTTGATGCTGAGATAATCCAATCAGATTTGGGTTTAAGCTCATGGATTTGTTGTTTAGTATGTTAGGAAGCACTGTATTTCCTTCATATAGATATACAGTGTTGTCTGCTTCATGAATTTGGGCTACTACACTTAGTATATTGTGTTGGTCCTTGAATTGTTTCAATCTTACCTTGGTTCTTTGTGTCAATTATTTATGGTTTACTGCAGGATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATGGTAAATTTCATATACTCACGTTCAGACCTCTGTTCATTTATTGTCCAGCGTAATAGTCAAATTTAACTACTTTGCAGGACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCT</genome_strand>
        <mrna_strand>GGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTG..........................................................................................GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAACAACTGCTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACATCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG.............................................................................GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATATTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335680" ref_strand="+" ref_description="SGN-U335680        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | UBX domain-containing protein, contains Pfam profile PF00789: UBX domain | chr2:17967788-17970804 FORWARD | Aliases: F14B2.15(evalue: 4e-18, score=89) genbank/nr: gi|20147205|gb|AAM10318.1| MFL8.1/MFL8.1 [Arabidopsis thaliana] gi|25090378|gb|AAN72288.1| At2g43210/MFL8.1 [Arabidopsis thaliana](evalue: 3e-16, score=89)">
      <seq>aaaaaccgtttccacccttgtttgaaaagcattcattttagagttttggctcaaaattccgattgatcggagtgaaggcgcaatcaagctatggagcaacttttatctcctctcgtgttcaatggttctactgtagaagccatcactgaagccaagcagaagaagaagctttttgtagttcttgtttcaggtggcaatatggaatcaaatcaatcggaaacatcaacttggcttgacccaagagttgctgattctatatctaagtactgcattttgttgcacatcctagaaggaagtactgatgccagaaacttctcagcattgtgtatcctttgcctgtataaagtttctccccccctcccccttgagatactctattcctcgtctaatttcttttgtttctttacacatccctctatcagtgcagggagttttgttttctttgtctattaattgcgcgtattctgagagggtgagggatctttctcttctgaatcaccatgagcttggagctcatgctagatatcataaacaaggaattctaggacctgatttatggaaattttctagctgaaattttgtaaatggagttggttaaagaaacttcaagcagaggtgacgcttagatgtgttatacaaaaaattcatctaaatggaagcgaaataaactatattttggggcaagtgtagactttataaacagatacattggntgcangggtctccctctgtctaacagaagaaattcatcatcctgctggcaactttccagggtaacccgggtcatgtcatactgactggcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="54550" stop="51426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54250" g_stop="54161" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.086" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52967" g_stop="52868" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="190" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52441" g_stop="52389" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="243" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52290" g_stop="51726" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="805" r_length="562" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U335680" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54250" e_stop="54161"/>
          <exon e_start="52967" e_stop="52868"/>
          <exon e_start="52441" e_stop="52389"/>
          <exon e_start="52290" e_stop="51726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCTGTAAGCTTACTTCTTTGTTTGTGGATTCAGAAACCCTAAATCCCTTTTAGTTTAACTATCAGTTATTTTGTAGGAATACTTTCATATTGTTTGATGGAACTGGGAATCGAAATCCTCGGGGAAAAATGGTTATTCGATTTCTCTTAGTTATGTTATATAATACTAAGTAGTTGTAAAAGAGAATTCTAGAGCATACGGCACACGTAAACAATACTATTGGATGTGTTGGACTTTACCTTCTTTTTAGTGATCTATATTTTCAAATGACTTTGTTAATTCTGCATTGAACTTGATTTAGTGAAAGAAAGAACAACCTTTTATTTCTTTGTCAAGTTTGATTAATTGCAAATGCCTTATTTTACAATTGCTCAGTTTTTGACCATGTTATTCAAGGTTTAAGGTCATTGCTATTGTTTTTGGGGGTCCATAGTTAGTCTATTTATAAAGTGTTTCAACTGATTTATAGGTTTCAACTTGTTTTACAAGTTAGTTTTTGGATCTGCTTAGTTATTTTGTCATGATTTCTTAGGAAATTGAAGGAGATCCTTATAAAATATAAATATTCAGTTATTCCTTGATTCAAGAGGGAAAATAATATGATTCAGTCATCTTTTTTTACCCAAAAAGGAATTAAAGGTATGATTTGGTCATTTTTTGTTGAGGTTGTCTTTCTTTGTAAAAGTAGGCGCATAGAAATCTGGGGGATCACGCGCTTCACGTGGTATTTATTAGGATTAGAGCTGACCCAAATTATGGCTTATCTCATACAACTCAACACGGAGCATTGCTTTTATCGTCAACAAAGAGTGTCTCTCGATAAAAGAAGTCAGCTTTGGAAAAAAAAATCAATTTTGTAGCCAAAACCAGACTGTCAGATTTTCTTTTATTTTGTATTTAAATATCTTTGAATTCAACAATAAAAGGTGAATTGGGTATAATCTCTTGCTTTTCTTCACTAAGTTAGGATCTCAAAAATTAATATAGTTATGCAGTCATTCCTAGATCTTTACTTTCTGCACAGGCTTGCGTTTGTTTGAACTATGGATTACTCTGTGAGTATTTCTTAATCTTTGCTTATGTCTTTAGTTTGTATTTTGTTCCTTAATTCTCTGTTAGAATCTTTATCTTTGTTCATCATCCTAAAGCTGGATCTATCATCTTAAGGCTGAAGTTTATATTGCCTCTTATAATAGATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAGGTAACCTGTTTCTAATTCTCTTCAGTGTATTTATGCTATAAATTCCACTAGTGCATCCTAAAAAGAACTTGTCGTTAGATAGATTTGGGTGATGTTGCAGCAAAGTTTATAACATTGAATAACAATAGGTTCCGAAGTATCTCAACTGGACTCAAGGGTAACTGGGGAGTAGTTAGACTCATGATAAGTGTTCTTGACTAACCCGGGGAAGCATATTCTCTCACTCAACCAAAAATGGAAGCATTTCATATGATGATATACGGAGATTTTCAAAAGAATTATTTGCTGATTTTACAAGAATCATAATAAGAAATTAGTAACTATTTTTCCCTTTGCACATACTGAGAGATCACTTTGATGCTTAGGAAATAGATAAGTCTTTAGACTTGTCATCCTAATTGTATTTCTTGCAAATTTGTGTCCTAGGTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGAGTAAGTTTATCCTTACACTTCCTAGAATTTTACTAGGTTTGATGTTTTCAGCCCTTCAATAGTAAGTCCACTTTCTCATCTTTCTTCTAATTACTCAGGTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTT</genome_strand>
        <mrna_strand>AAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA..................................................................................................GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAAT-AAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACATTGGNTGCANGGGTCTCCCTCTGTCTAACAGAAGAA-ATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCCGGGTCATGTC-ATACTGACTGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312838" ref_strand="+" ref_description="SGN-U312838        Tomato 200607 #1 [159 ESTs aligned] arabidopsis/peptide: AT1G05850.1 | Symbol: None | chitinase-like protein 1 (CTL1), similar to class I chitinase GI:7798656 from (Halimolobos perplexa var. perplexa); contains Pfam profile PF00182: Chitinase class I; identical to cDNA chitinase-like protein 1 (CTL1) CTL1-ELP1 allele GI:17226328 | chr1:1766502-1768662 REVERSE | Aliases: T20M3.12, T20M3_12 (evalue: 8e-136, score=480) genbank/nr: gi|37051096|dbj|BAC81645.1| class1 chitinase [Pisum sativum](evalue: 1e-137, score=493)">
      <seq>taatctctaccgtccattcacacatcacaaacaatctccaccgtaagctcatatttattgaaaaagatactccatctaactcttgcttcttttgtaccaaagaaaattcattctctcttctattctattcactttctactaagaaaatgaagatgaggatgattatgattttgtttctgttggtaatcattgggggttttgttcatggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtaccaagatgtgtgtgaaggattgggagtgcaacaaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatggtgtcgccactggcggaccactcgcttatggtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaagcttctatgttgtaatttgtaaaactgcaattctactgtcctgttgcatttcatccccaaaaaaaaaaaaaaaatacccatactttgatacggagctatcattgttttgccgaaaataacataattataaagcctatttctgaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattcgggggggggggggggggccccctttccccctagggggggggtttaaaaattttgggggggcttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55404" stop="57565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55704" g_stop="56240" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="697" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57260" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="1405" r_length="708" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57261" i_stop="57377" i_length="117">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57378" g_stop="57406" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1406" r_stop="1434" r_length="29" r_score="0.759"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-U312838" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1434</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55704" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="57260"/>
          <exon e_start="57378" e_stop="57406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAGGCAAACATCTCTGTTACCCATACTTTGATACGGAGCTATCATTGTTTTGCCGAAAATAACATAATTATAAAGCCTATTTCTGAAGAAATCAATCTTTCCAACCACAATCATTTGGCAAAACGCAACTTCACTTAGAAACCGTTAACCTTTCTATCAAAAGACTAACCAAAGATCCAAACAGAAGGAACTATCATCCATTTAAAGAAAGAAAAGAAAAAAGAAGATAAAAACAT</genome_strand>
        <mrna_strand>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAAAAAAAAAAAAAAAATACCCATACTTTGATACGGAGCTATCATTGTTTTGCCGAAAATAACATAATTATAAAGCCTATTTCTGAAGAA.....................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333960" ref_strand="+" ref_description="SGN-U333960        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G16920.1 | Symbol: None | glycoside hydrolase family 19 protein, similar to class I chitinase GI:7798670 from (Arabis microphylla) | chr3:5776492-5777881 REVERSE | Aliases: K14A17.26 (evalue: 5e-52, score=202) genbank/nr: gi|34016875|gb|AAQ56598.1| chitinase-like protein [Gossypium hirsutum] (evalue: 5e-51, score=204)">
      <seq>ttatgattttgtttctgttggtaatcattgccctgttttgttcctggagatgagaatgagtcattcaggaagcaacccacactagtgaagacggtgaagggtacctagatgtgtgtgaaggattgggagtgcaaccaattgtctaaattttgttgtaatttgacaattactgattatctggatgttgaccaatttgagctccttttcactaagaggaactcacccgtagctcatgctgttggattctgggattatggatctttcattacggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtaccataacttcttgcggctatggcgcccccattggcggaccactcgcttatggctctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55566" stop="56666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55866" g_stop="56240" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56366" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="423" r_length="47" r_score="0.826"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-U333960" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55866" e_stop="56240"/>
          <exon e_start="56321" e_stop="56366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGATTTTGTTTCTGTTGGTAATCATTG-GGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGG-TCTATG</genome_strand>
        <mrna_strand>TTATGATTTTGTTTCTGTTGGTAATCATTGCCCTGTTTTGTTCCTGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCTAGATGTGTGTGAAGGATTGGGAGTGCAACCAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTACGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTACCATAACTTCTT................................................................................GCGGCTATGGCGCCCCCATTGGCGGACCACTCGCTTATGGCTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333961" ref_strand="+" ref_description="SGN-U333961        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G05850.1 | Symbol: None | chitinase-like protein 1 (CTL1), similar to class I chitinase GI:7798656 from (Halimolobos perplexa var. perplexa); contains Pfam profile PF00182: Chitinase class I; identical to cDNA chitinase-like protein 1 (CTL1) CTL1-ELP1 allele GI:17226328 | chr1:1766502-1768662 REVERSE | Aliases: T20M3.12, T20M3_12 (evalue: 3e-100, score=362) genbank/nr: gi|37051096|dbj|BAC81645.1| class1 chitinase [Pisum sativum](evalue: 2e-105, score=385)">
      <seq>ctgttggattctgggattatggatctttcattagggctgcagcactttaccagcctcttggatttggtaccaccggtggtaagaaaatgcagatgaaggagattgctgctttttttggacatgtcggtagcaaaacttcttgtggttatagcatagaccataagcgagtggtccgccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctcttggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgttggcaactggaagcccacaaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggtcgcgaggaagcaggacctcacgaagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctagttgttctatcatgtaatatttttggacttgcattttttttttttatgttcatggtttgatttataaatatatatatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="55800" stop="57404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56100" g_stop="56240" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56350" i_length="110">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.64"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56351" g_stop="56480" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="265" r_length="124" r_score="0.862"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57104" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="816" r_length="551" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-U333961" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56100" e_stop="56240"/>
          <exon e_start="56351" e_stop="56480"/>
          <exon e_start="56553" e_stop="57104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATG</genome_strand>
        <mrna_strand>CTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT..............................................................................................................GTGGTTATAGCATAGACCAT-A-AGCG-AGTG-GT-CC-GCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCA-TTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333962" ref_strand="+" ref_description="SGN-U333962        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G05850.1 | Symbol: None | chitinase-like protein 1 (CTL1), similar to class I chitinase GI:7798656 from (Halimolobos perplexa var. perplexa); contains Pfam profile PF00182: Chitinase class I; identical to cDNA chitinase-like protein 1 (CTL1) CTL1-ELP1 allele GI:17226328 | chr1:1766502-1768662 REVERSE | Aliases: T20M3.12, T20M3_12 (evalue: 1e-76, score=265) genbank/nr: gi|37051096|dbj|BAC81645.1| class1 chitinase [Pisum sativum](evalue: 1e-79, score=289)">
      <seq>aaacttcttgtggttatggtgtcgccactggcggaccactcgcttatgtctatgctataacaaagaaatgagtcccagccaagattactgtgatgaatacttcaaattaacctacccatgcactcctggagccagatattacggtcgtggtgccttgcctatctactggaactacaattatggagctattggtgaagccctcaagcttaatctctaggatcatcctgaatacattgaacaaaatgctaccatggctttccaggctgccatttggaggtggatgaacccaatgaagaagggtcagccttcagctcatgatgcctttgtgggcaactggaagcccacgaagaatgatactttgtctaaacgagttcctggtttcggtaccaccatgaatattctctatggtgatggtgtttgtggccaaggtgatgttgacgcaatgaacaacatcgtctcccattacctctactaccttgacttgatgggggttggttcgcgtagaaacaagacctctctaattactcaactgcgcctaactaaaaccttttaacccatccgctgttgcttgcttcttgagatcatcctactttacccccgcccatacaataaaacgttgggaatcattattgccattctaatttgtctatcatgtaatatttttggacttcgcatttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56013" stop="57366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56232" g_stop="56240" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56321" g_stop="56480" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="168" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56553" g_stop="57066" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="686" r_length="518" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-U333962" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56232" e_stop="56240"/>
          <exon e_start="56321" e_stop="56480"/>
          <exon e_start="56553" e_stop="57066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTTGTAAGTTCATTCATTTGTTGTTGTTGTTATTATGATGATTATTATTATTATTAGATTAAGAGTATTAATTACAAATCCAGGTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGTAATTTCCATATATATTATTAGATCTGCATCTGATTGATTGCTAAGAATTTTTCTTCTCTTTTCAAAAAAGGAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGG-TCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGC-TGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAAT-AAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTT-GCATTTTTTTTTTTT</genome_strand>
        <mrna_strand>AAACTTCTT................................................................................GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTAT-GTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG........................................................................GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTAGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACGAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTTCGCGTAGAAACAAGACCTCTCTAATTACTCAACTGCGCCTAACTAAAACCTTTTAACCCATCCGCTGTTGCTTGCTTCTTGAGATCATCCTACTTTACCCCCGCCCATACAATAAAACGTTGGGAATCATTATTGCCATTCTAATTTGTCTATCATGTAATATTTTTGGACTTCGCATTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333963" ref_strand="-" ref_description="SGN-U333963        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G05850.1 | Symbol: None | chitinase-like protein 1 (CTL1), similar to class I chitinase GI:7798656 from (Halimolobos perplexa var. perplexa); contains Pfam profile PF00182: Chitinase class I; identical to cDNA chitinase-like protein 1 (CTL1) CTL1-ELP1 allele GI:17226328 | chr1:1766502-1768662 REVERSE | Aliases: T20M3.12, T20M3_12 (evalue: 2e-07, score=53.1) genbank/nr: class(evalue: 9e-07, score=57.4)">
      <seq>gatgttgacgcaatgagcaacatgtgtctcccattacctctaacggccttgacttaatgggggttggtcccgaagaagcagggcctcccatagtactcaactgcgccgaacaaaaaccttttaacccaaccgctgttgctgcttcttgagatcatcctactttagccccgcccatacaataaacgttgggaatcataattgccattctaggtgttctatcatgtaatatatttggacttgcatttttttttttttatgttcatggtttgatttataaatatatatatatatgtaatgtgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="+" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="56515" stop="57413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56815" g_stop="57113" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="302" polyA_stop="321"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="+" ref_id="SGN-U333963" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333963" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56815" e_stop="57113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGACGCAATGAACAACAT-CGTCTCCCATTACCTCT-ACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAA</genome_strand>
        <mrna_strand>GATGTTGACGCAATGAGCAACATGTGTCTCCCATTACCTCTAACGGCCTTGACTTAATGGGGGTTGGTCCCGAAGAAGCAGGGCCTCCCATAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGGTGTTCTATCATGTAATATATTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320039" ref_strand="+" ref_description="SGN-U320039        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: AT2G43240.1 | Symbol: None | nucleotide-sugar transporter family protein, weak similarity to SP:P78382 CMP-sialic acid transporter {Homo sapiens}; contains Pfam profile PF04142: Nucleotide-sugar transporter | chr2:17975775-17982365 REVERSE | Aliases: F14B2.18 (evalue: 4e-26, score=116) genbank/nr: gi|62320356|dbj|BAD94734.1| hypothetical protein [Arabidopsis thaliana] (evalue: 6e-67, score=258)">
      <seq>aacctctctctctataccatctctctctcaccttccaattccatccgcttcacttctccaaaacgatgttgtcactaccacgtcatttctcgccgagtctccccctccccttaccgtcgacgccatctccgccgccgccgcttcccctttcttaaaaagttctccccggaagacactccaccgtccgatcaaaacctccactttgtccttaccgtcgataatttgcctaccaaatccttctactcaatcaaggacctcatccacttgaagctccgagaattcctccactcaggccgagctgccattgaagacttgcaaactctcatccgtatagataccgacgccgggagagtttccttctcctgcacaaggtccaccgttaaattcctagcaactctactagtttcaactttcctacttattttcactcttagggctattcttaacctagttcggcggataccactcaacactggaaacaacaacgttgaattagtctataagagagaccgtagtttaggtggaagagaagtacttgttgctaaaaatgagacgcctacgcttgataggaagaaaccaaatgtcttggatagagatgaaggaaatagtaattgggatttggatactccaattagcttttccaggaggcgaaagaagaagagttctgtggagcaattgcctaaatggtggcctgtttcgacttctggttccgatcaagttgggacagagaatcaagaagagtatcagagaatggccgatagattgattcgagccatcttggacaatagaatgacggggaaggacattttagcggatgatataattcaattacgacgcatagggaggatatcaaacgtgaaagtttcatttgatactgagaatgcacgtgataccctttttcgcgtggcagtcgactttattcttaattattgtgaaagcactgcaagtcagtcagcttttgttctaattgatggtgaagaagcacaaaactttgttgctgggcttgctgataatgttggacttgagagtactcgggctgcaagaatggtgtctgcagctgttgctgcacgcactaggtcaaggttcttgcaagcttgggccttggaaatacagggaaagcattctgaagctgtggtggaactgttcaaaatatgtgtcatccaccagatatttcctcctgaagagttctcgcctgagatggagatggtggctcgtggacttgagaaacacttaaaagtagaccaaagggagtccctgatgaacagtcttctacaagtgtgtggtgatgagaccaggagaagtgtggctgaagctttgggtctgatgtacatgaagagtaacattgctcatcaacaagaaaacaagtatacatagatcactaatttatgcgtacaggaattgatttttaaagatgaataatgttttatgctcaaaaagacattggtgtacaagtagtactgcctgtatgcaataaccttacgaaatgcttcaagtggattattggatgtatcatgtaaaaggtaatgttatctgctagaagaaggtccaatgcacatccttctttgttctcttaatttcatcagcatagctatgaagttgaacttctttagtagtgatctcaaaacaatgaagcttacatgctgagaccagatatctatacatgtttttatcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="63706" stop="57094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63406" g_stop="62635" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62634" i_stop="62457" i_length="178">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62456" g_stop="62401" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="828" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62400" i_stop="61882" i_length="519">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61881" g_stop="61772" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="938" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61771" i_stop="61681" i_length="91">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61680" g_stop="61521" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="939" r_stop="1098" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61520" i_stop="58979" i_length="2542">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58978" g_stop="58886" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1099" r_stop="1191" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58885" i_stop="58576" i_length="310">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58575" g_stop="58444" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1192" r_stop="1323" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58443" i_stop="57744" i_length="700">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="57743" g_stop="57405" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1324" r_stop="1662" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1674" polyA_stop="1684"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U320039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1662</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63406" e_stop="62635"/>
          <exon e_start="62456" e_stop="62401"/>
          <exon e_start="61881" e_stop="61772"/>
          <exon e_start="61680" e_stop="61521"/>
          <exon e_start="58978" e_stop="58886"/>
          <exon e_start="58575" e_stop="58444"/>
          <exon e_start="57743" e_stop="57405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTCTCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGATGAAGGAAATAGTAATTGGGATTTGGATACTCCAATTAGCTTTTCCAGGAGGCGAAAGAAGAAGAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATCAAGTTGGGACAGAGAATCAAGAAGAGTATCAGAGAATGGCCGATAGATTGATTCGAGGTAATTTTATTTTCTAGGTTATTGTTAGGTATGCATCTGTTTTTTCCTTCATAGTTGTGCAACTCTTCTTTCATGTCTAAATTGTCTTATTGTTTAATCCATTGAAAGAATGGAAGACATGAATGATTGTTAGTTATGCACTTCCTTTTAAATCACAGTTTACAAATTTGCTTTCCAGCCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAAGTCAGTATGTTAATGGCTTCTTAGTTTTCACTATCTTTATTTATATACAAATGTGAATTGTTTGCATAGTTACTTAGTTTTTTAATTTTGTTTGCAGCCCCCTATATTTATGAGTTTGTCACACATACCATATTAACTTCTTTTGCTCCAAGTAGCCCTTTGAGCACACAGATTTGCAACTTTATACACATAAATATATGGAAATGCGAGCTCCATTTCAGGAAAGGAAATTATAAGAATGAAGTAACCCCAATATCAAAGTTTTTTATTTTGAGAATAGTAAGTGTGTATTATATCTAAAAACTATAGTTAGATAGCCTTTTCATTTTGCATGGTACCATCTCAGTTCCTCTTTTCCTTTTCAAAAAATCTGTTACTTCACTGAAGAAAAGTATTAAAGAATTGTTCAACATCATTATAATTTTTTATATTTCAAGTTCAAAAAAAATATATGATTTTTTATTTTCCAAGAATATAAGCTATACTCAACTTTGTGCTAACATGCTGGTCCATTTGTAGTTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAGGTAGCTCATTTAGCTTGATGACTGATTGCTAGATGCCCTCTTTTGCATCTTTTTACCCTCTTATAGTTTCTTCTTCTTTGCTCTTCTGCAGCACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGGGTAAGGTTTTTCTACTACTTTGAATTAAATTCATTTTTTGCATTTGGACTTCTTGAAGCAGGCTATGATATTAAAAACCTTAATCCATCCACAAAGAGTATTGCATTAATCTACTTCCTTTTTGAAGCTATCATATCTTCTTTAGCATTATAGTTGGGAGAATTTGTAAGCTTAGGAGGATTATGGCAGAACCTATCACTTCTTTTTTAACAATAGACAGATGTGACCCAATTGGATTATTTAGGCCAAGTGTTTACTTGGTTCAAGTGGTGTCAGGATTTAAAATTAATTCAAGGAAGTGTGAGATTATGCCCGTTGGGGATGTGGAAGACATCCATCAATTCCCAGGTTCTAAGTTGTAGGGTTGGGGCTCTCCCAACTACCTACTTGGATTACCTTTAGGTGCTTCGAGATCATTGGGTGTGGAATCCCGGTCTTCAGGAGTGACAGGTGGCAGAAAAGATGCTTGTACAAAGGCAGGAAGGAAGTGCTTATCAAGAGCATATTATCAAATATCCTCACTTATATCTTTTCTTTGGTTCATGCTCTATCTTCAATCATAGAAAGTTGGGAAGGATCCAAAGAAATTCCCTTTGGGACGCGGCGGATGGGGCAAGGAAGTTCCACTTGGTGTGGTGGGAGCCTGTCATGTCTCCTAGAAGGTAAATGTTTTTGTGGAGAGGGTCAATAATCCATAGATATGGGGCTATGGAAGGGAGTGGAAATCTAGAAATGTGTATGCATTTTGGGAGGGAAGTTAATTTTTGGGGTCATAGGTGGTGTTAGAATAATTAATGAAATACATTTCAAGCTTGCACAGAGCATCTTGCCAAAGAGACTTGACAATACAACAATTTAGGGGCTTGGCTAGCTACTAGATGGGCGATTAGAAAGCGTAAGGTTATTTGCGTTAGCTGGTGTTATATTTGCAAGCGGGCAGGATATGGATTCATCTTCTTCTTCATTGTGGTCTTACCATGAGGATATGGGGGAACATGGTTTATTGGTTTGGTACTTCTCGGGGCTATGCTAGGGACTATGAAAGAGTTGATGTTCAGTTGGAAGAGCGGGAGAAAGAGGAGAAGACTCGGGGCTTGGAACATGGTTCCACTTGCGTTAATGTGGTCGGAGAGCTTTTGAGAGGGTAGAGTTGAGCTTTGCTTAATTAATAGTAGCCACTGATCCCTTATATTCTTTTGGTGCACCCATAAAGTTCCCAATTGTATAGAAGATTAGTTGAAGTTTGTAGAGAATCGTTTCTTTTTGTAGATTATATACCTTTTGGTATTCCTCTTGCATACGGTTAATTTTTTGCCATGTTTATGAATGAAAATATATTTACTTGATAAAAAAACTATTGAAACCGAATTAGTTAGTAAGCCCTCCTAATTAGCAATTTCATATCTTCTCATACCCTGAAATCTAAGGTATTGTCTGCGTCTTAAGCCCTTTGTTCCTGGTCCACTACTATCTCATAGGAGCCTTTTGCGGAAAATTACTTTAGTGTCTAGTCGCATATGCTATAGTTTGTTTATCATAAAAATAAAAATCAACAAAAACACATCCTAAACAGGCTCGGGAAGCATCACAACAACAACAACAACAATCACAATCCTCTCAAAATAATTCTAAACTCAAATCACAATCCTCTCAAAGAAGATTGAATTGGATCAAGTTAGGATGAGAATTGTGTGAAATTAACTTCTATGAACTGGAATATCGCACAAAATAAATGGAGGAGTGGATGTCTATTGTACAGCCTCTTCAGTTTACATCTTCCCAATGAAGCTGCTTCCACACCTCAAATTTTGTGTGAAAAGTCTCATCATAGAAATGCAAGGTAAGACTCTTGTGTTGTACATTTACTCTCCCCATACTCTTTACCACTTTTGTGCATGGGTAAGCCCCTAATATAATCGATTTAGCAAGGAAAATGGAAGGGACCTAGCAAATAAACAGTTGCTAATCATTGCCATCTTCCTCTTTTACCTTAATAAAGGAAGAACTTAGGTCTTCCATAAAAATAAATCCCTCCAAGATAATGGGATCCTGGAGCACAAAACATGCTGCATTAGCAGCTTCCGAGGAAGTTCCATACCACAAGGGATGTAAAATAGACAACCTACCCAAATGTAATTAGTGGCTGCTTCCACGGCTCGAATCTGTGACCTTATCGGTCACATGGAGACTACTTTACTGTTGCTCCAGTTTCCAAGATGAGCTAATAAAATAAGTCATCAGTTCTAAAGCCCCTATAGATTAATATGTAAGTGTAAGGAAACTAAATAACTGTTTTAGGTCCTTGTAATTTAACTAATCTATCAACTGCTCTGGTAGGCTGAATGAATCAGCCAGTGAACTTATGTATATTTCGCCACGGATTTGGTGATTGAGAGAATTATTATCTTGGAAAAGAAAAAAGCTCGTCTTCCATCTTCAGTTTCCCTCTAAAATAAACTGTTGGCATGATGAAACTAATGGATGATCAAGAATGCAATATAGTTTACTTGTACTAATGCTACTATGATCATTTAATTTTCAGGCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCGGTTTGTATTTCCTCATCTTGCCTACTTCTGTAAAGTTCGTGTGATTTATGCTCTGATTGTGTATCTCAAGGTGTGTACTGTATTAATTCTTTTAGAAGTGCCTTAACATTGAGCCATTGATATTTTAAAAACCCAGGAAAACTAATTGACAAACTTTTCCTGATCCAATTTCTGATGGAGTATGATTATGGACTATTTACTCTTTGTGGTAATTTTCCGAGTTGTCGCTATTTCAAGGAGCCAATGCTCTTTGCATCATAGTGTCAGACTATTTCATGTTATTTGTTGTTTTATTGGCATGTCTCTACAGCCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAATACAATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTACACAGATGTGTATATTGATATTGATGTTTCCTTTATTTGTTGGTTTTTCACCATCTATCTGCTTCTTGTTGATTTGTTTTTACTTGTTCTCTTCTGCAGATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGACATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAGGTCCAATGCACATCCTTCTTTGTTCTCTTAATTTCATCAGCATAGCTATGAAGTTGAACTTCTTTAGTAGTGATCTCAAAACAATGAAGCTTACATGCTGAGACCAGATATCTATACAT</genome_strand>
        <mrna_strand>AACCTCTCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGATGAAGGAAATAGTAATTGGGATTTGGATACTCCAATTAGCTTTTCCAGGAGGCGAAAGAAGAAGAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATCAAGTTGGGACAGAGAATCAAGAAGAGTATCAGAGAATGGCCGATAGATTGATTCGAG..................................................................................................................................................................................CCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAG...........................................................................................CACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCG......................................................................................................................................................................................................................................................................................................................CCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGACATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAGGTCCAATGCACATCCTTCTTTGTTCTCTTAATTTCATCAGCATAGCTATGAAGTTGAACTTCTTTAGTAGTGATCTCAAAACAATGAAGCTTACATGCTGAGACCAGATATCTATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332708" ref_strand="+" ref_description="SGN-U332708        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ctgatgaacagtcttctacaagtgtgtggtgatgagaccaggagaagtgtggctgaagctttgggtctggtatgcctagtttattactccccttccctatctagaagatctggaatttgttgttcattgttgttgtgcttctattgagtgacatttcaatcggaagtggcgtctcctgtcaacttcgcttgttcttgtgctttctgaaagaattttgcccttcagctgtgtaaaatagatcttaaccgacagtgcggagaagacagaattctatcctcagtcttgtacactgtcttgctcccatttctatttgttcttttcaagctcaagtcacacaacaggagtttgttgaatgtttcctaaatccttaaatcaatacagattccaccttcacctctccaacctctgggaagttaacttttttctaatatcactactctggcagtgtgaagaagtatcttattaccatggatgttataaaattgttggattttctctttagaatttgtagacaaatctgagccaagtctagctagggcagggacagtctggactactgatgcaatacttattgcagaggttatctgctattgtaattggtcgagttatcctttgaaaatacatatggtcttattacctttgtggtattaaaagtaacatttattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="58812" stop="57543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58512" g_stop="57843" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U332708" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58512" e_stop="57843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAATACAATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTA</genome_strand>
        <mrna_strand>CTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAAATACATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327064" ref_strand="+" ref_description="SGN-U327064        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G59360.2 | Symbol: None | nucleotide-sugar transporter family protein, low similarity to SP:P78382 CMP-sialic acid transporter {Homo sapiens}; contains Pfam profile PF04142: Nucleotide-sugar transporter | chr3:21946256-21951227 REVERSE | Aliases: None (evalue: 1e-50, score=196) genbank/nr: gi|51971655|dbj|BAD44492.1| unnamed protein product [Arabidopsis thaliana] >gi|26450627|dbj|BAC42425.1| unknown protein [Arabidopsis thaliana] (evalue: 1e-53, score=212)">
      <seq>aggggcattcgaaggcaaccatgcttctaattgttaacaatgcagcgcaaggaattctgtcgtccttttttttcaaatatgctgatacaattctgaagaagtattcttcgaccgttgcaacaatatttacaggcatagcatctgctctgctgtttggtcatacactgaccgtaaactttcttcttgggatttctgttgttttcatttcaatgcatcagttcttttcacctctttcaaaagttaaagatgatcaacaaaacgggacagtggagttgattgacgtccgggagaaccatagccctaaagattcatcctttgtaaatatggcagcaggagcaaatgaggaggcaagtcatcgagtaggacctgatgaaaggcagccacttcttccaagatgaagctacttgaactgtcatttgtagcagcagatattgtggtggagagcatttacagtcattcagtgtaatatggagaagaaacagtgttgttgtagtctctcttttcttctctctccaaaatgtgcttcatgggattgtttcgcttggagagaaggatatgtggatggagaggttttaggtagacaacaacaatagagttgttatgcaatacgaatacgagctgttgtattataagttacaaacacatgaattttattgtaaacaatttagagttatcaattctttcatatattcttgtaatcaattgaattttgatgatacacccgtggatgtgttagattaaacatttctttttgtaatttcaagcaaattgtacttgaatggtaattcatttcatatatcttcttctttattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="66540" stop="63203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66240" g_stop="66157" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66156" i_stop="65988" i_length="169">
            <donor d_prob="0.604" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65987" g_stop="65854" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="218" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65853" i_stop="65774" i_length="80">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65773" g_stop="65694" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="298" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65693" i_stop="64721" i_length="973">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64720" g_stop="64672" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="347" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64671" i_stop="64579" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64578" g_stop="64515" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="411" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64514" i_stop="63906" i_length="609">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63905" g_stop="63504" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="813" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U327064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66240" e_stop="66157"/>
          <exon e_start="65987" e_stop="65854"/>
          <exon e_start="65773" e_stop="65694"/>
          <exon e_start="64720" e_stop="64672"/>
          <exon e_start="64578" e_stop="64515"/>
          <exon e_start="63905" e_stop="63504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGCATTCGAAGGCAACCATGCTTCTAATTGTTAACAATGCAGCGCAAGGAATTCTGTCGTCCTTTTTTTTCAAATATGCTGGTGAGATCATTACTCAGTTTGCTCCACCTTCTTTTCGCTCTTTATATCCTCTATTAATGGGGGTTGTTATATGTTTCTACTTGGTGCTTCTGTGTAACTATCTCACTTTTAACTAGAAATTTTTTTCCTTTATGGTATTCTGCTGTATAACACAATTTGTTTGTACCAGATACAATTCTGAAGAAGTATTCTTCGACCGTTGCAACAATATTTACAGGCATAGCATCTGCTCTGCTGTTTGGTCATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAGGTATTAAAATTGAGAGAGTTCTCCCTCTGGTATTTTCTGTTTTTTCTCTTGGGGCTGATCATTTGATTTTGATACTTCAGTTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAGGTATTTACTTGTTTAGTGTAAAGCAAAACTATGTCTCAGCCCCAAGTTAGTACTTGTTTTGTGTAAAGTAAAACTATATCTCAGCCCCAAGTTATATTTCCTTGTCAGCTACTGTTCTTAGGATACTGCTTTCTGTAAACTAATTTAGTTTTTTATATATGCTGAGAATGTGATGGAAAGCAGGATTCTGATGGCTTGCTCCCGGTACATCCATTCATTGAAAATGATTTGTGTCTGCTGAATGAGTAACACGATAATCCAACTATATAGCCAACTTTTCTTGTAGCAGATGTAGTTCTGCATGTAATTCAGCTTCACAAATTTCTCATGGCTGTGACTTTTATCATGTCATTTAAGTTTATATCGTATCATTGGATTACTCTTGTCTTTATTTATGTATTTCAAAGTGTCAAGGTCCAGATGTAATCAGTTTAGAAAATGTGTGAATTTATTGCTTTCCTGCATAGCTGATGGGTTGCTTCTATTTCTTTTGTTTCTATTTATGAAAATAGTACCTCCTTGTCGCTTGATATGATGAATGCATGCCTTTTTTCTTAAAATAATATTTAAAAGATAAGTTACAAGTTATTGGCATAAGGTCCTTTGCTGTGCAAGATAAATACTAGTTTCAATTACTAAGACAACAAGTCATACTTACTATTGGGTGATGATTGATATTAGCCATACTATGTACAGAAGCATTTAATAAGTTCTTTCTTGATGCTGGTAAATACTTCGTGAGACCTTAATTGTGCAAGTTTCTTTAATTCCTTGCTGTTTTCCAACTATAACATCAAATCTATTTATTGAAAAATGGATCTGAAATAAATGCTAATCTTTTAAGGTGTGTATATCATAGAGGTGCATCTTCACTCCCTTCACCCGTCCTTTTGACCCCCCACCCCACCCCCACCCCTCACCCCAAGTTTAAAAAGCTGTATCTGTTAATACTTCCCTCTTGTATTGTTTTCAGCCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAGGTATGGATCTTTTCTTCAGAAATTTTTAGATACAAAGTTTTTGCTGTATTTCCTACTTAAACTTGGATTGATTTCATGTTAATTCTTTTCCAGGCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACTGTAAGTGTGCTAAAGTTTCTATACTTTCTGATGATCTGATCCAAGTTATTAACTTGGATACACATAAATTAAGACAATGTTCAAACTTTTTATGGGTTATGGATATGTCTCTTGGTTACACTTACTCAAGGGAAACATGTGGGAGGACAAAAAAGAAGACCAGGAGAGTTTGGTTGGCACCTTGATCATCTAATGGGATTGTATATCATGTCCTGTTTCTCTTTTTATTTTGATATGTATAAAAAGAACTAATCAACAACAACATATACCCACACAGCGGAGTCTGTTCTAGAAGAATAAACAATTTCACCATCAACAGATGCCATTAATATTGTTTTATATTGCACTTAATTAATATGAAGTAGTTTCCAGTCGGAGTAAGTTATGCTATTTTCAGTTATCAATGTTATGAGCTGTAGATATAGACACCAAGAAGCTATGCTAATGTCGTTTCGTAGTCAGATTCCATGTATGTTGAGTGATTTACAACTAAAATGCACCAGATTGTCGTGAGAAGTATATCGTGCATTTGTTGGTCTGTAAAACTCAGTTCCTGGATATGGTGCCTTGTTATTATACATTTTGGTTACCTGAAAATTGTTATTGTAGGTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATGGAGAAGAAACAGTGTTGTTGTAGTCTCTCTTTTCTTCTCTCTCCAAAATGTGCTTCATGGGATTGTTTCGCTTGGAGAGAAGGATATGTGGATGGAGAGGTTTTAGGTAGACAACAACAATAGAGTTGTTATGCAATACGAATACGAGCTGTTGTATTATAAGTTACAAACACATGAATTTTATTGTAAACAATTTAGAGTTATCAATTCTTTCATATATTCTTGTAATCAATTGAATTTTGATGATACACCCGTGGATGTGTTAGATTAAACATTTCTTTTTGTAATTTCAAGCAAATTGTACTTGAATGGTAATTCATTTCATATATCTTCTTCTTTATTC</genome_strand>
        <mrna_strand>AGGGGCATTCGAAGGCAACCATGCTTCTAATTGTTAACAATGCAGCGCAAGGAATTCTGTCGTCCTTTTTTTTCAAATATGCTG.........................................................................................................................................................................ATACAATTCTGAAGAAGTATTCTTCGACCGTTGCAACAATATTTACAGGCATAGCATCTGCTCTGCTGTTTGGTCATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAG................................................................................TTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAG.............................................................................................GCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATGGAGAAGAAACAGTGTTGTTGTAGTCTCTCTTTTCTTCTCTCTCCAAAATGTGCTTCATGGGATTGTTTCGCTTGGAGAGAAGGATATGTGGATGGAGAGGTTTTAGGTAGACAACAACAATAGAGTTGTTATGCAATACGAATACGAGCTGTTGTATTATAAGTTACAAACACATGAATTTTATTGTAAACAATTTAGAGTTATCAATTCTTTCATATATTCTTGTAATCAATTGAATTTTGATGATACACCCGTGGATGTGTTAGATTAAACATTTCTTTTTGTAATTTCAAGCAAATTGTACTTGAATGGTAATTCATTTCATATATCTTCTTCTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322247" ref_strand="+" ref_description="SGN-U322247        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G59360.2 | Symbol: None | nucleotide-sugar transporter family protein, low similarity to SP:P78382 CMP-sialic acid transporter {Homo sapiens}; contains Pfam profile PF04142: Nucleotide-sugar transporter | chr3:21946256-21951227 REVERSE | Aliases: None (evalue: 2e-97, score=352) genbank/nr: gi|18411150|ref|NP_567083.1| transporter-related protein [Arabidopsis thaliana] gi|30694978|ref|NP_850721.1| transporter-related protein [Arabidopsis thaliana] gi|13430658|gb|AAK25951.1| putative transporter protein [Arabidopsis thaliana] gi|14532830|gb|AAK64097.1| putative transporter protein [Arabidopsis thaliana](evalue: 1e-95, score=352)">
      <seq>tcaactccatccgtcggtcggtgagccggacttatctggatctggccggaatatttgtcttcccgccaattctctcacaggtcacttcttatctttttgcttatgtttaatgttaaaataagtttgatatgtagatctatttcatgtatggatgcttgatccctctcaaattcaatactatctgttgttatcatgcaaaaagatttcatttttttatcccttggatagtgagatctgcgctttctaaatttcgcattttcatcatctttgggacaagtgaagtcaggacttattcagctgcagctgcactaagagttcacaaagaacaagtgagctgaaatactaagcagttgactcatgaagaacggtatggcagaatgcgctgtctgtcattccaagcttgtttctccatctgtgaaaactatttcaagggcatatgatcgacacagaagcaagatttcatcaaagcaacgtgctctcaatgtcctattggttgtaggagattgtatgctggttggtttacagcctgttttggtatttatgtcgaaagtggatggaaaattcaagtttagtcccgtaagtgtcaacttcttgacagaggcgacaaaagtcgtctttgcaataataatgcttttaatccaggccaggcatcaaaaggttggagaaaagccacttctttcaatatccacatttgtccaggttttggttattgcagtgctgttgaaatttatcatgaaaaggcgattttccgtaattcagtgggaggctcttgctttgctgctaattgggataagcattaatcaacttcgatcccttcctgaaggcaccacttctttggctcttccagttaccacaattgcctacatctatacactgatttttgtaactgtgccttctatggcctcagtattcaatgagtatgctttgaagagtcaatatgacactagcatatatctccagaacttatttctctatggttatggtgctatattcaactttctagccattcttgggattgctgtatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="77941" stop="66564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77641" g_stop="77313" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77312" i_stop="76890" i_length="423">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76889" g_stop="76694" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="525" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76357" g_stop="76241" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="642" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76157" g_stop="76101" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="699" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76100" i_stop="68114" i_length="7987">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68113" g_stop="68054" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="759" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67917" g_stop="67795" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="882" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67794" i_stop="67658" i_length="137">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67657" g_stop="67580" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="883" r_stop="960" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67579" i_stop="66932" i_length="648">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66931" g_stop="66864" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="961" r_stop="1028" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U322247" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1028</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77641" e_stop="77313"/>
          <exon e_start="76889" e_stop="76694"/>
          <exon e_start="76357" e_stop="76241"/>
          <exon e_start="76157" e_stop="76101"/>
          <exon e_start="68113" e_stop="68054"/>
          <exon e_start="67917" e_stop="67795"/>
          <exon e_start="67657" e_stop="67580"/>
          <exon e_start="66931" e_stop="66864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAGGTCACTTCTTCTCTTTTTGCTTATGTTTAATGTTAAAATAAGTTTGATATGTAGATCTATTTCATGTATGGATGCTTGATCCCTCTCAAATTCAATACTATCTGTTGTTATCATGCAAAAAGATTTCATTTTTTTATCCCTTGGATAGTGAGATCTGCGCTTTCTAAATTTCGCATTTTCATCATCTTTGGGACAAGTGAAGTCAGGACTTATTCAGCTGCAGCTGCACTAAGAGTTCACAAAGAACAAGTAGGTATCTTTGTGTATCCATTATAGATGTGTGCATGCTATCAAGTACCTCACACCCGTGTTATACCCATTTGACATCTAGGGGATGAATGAATGATACATGCAATGTACATATTTGTTATGCGGTTTGGCTTGATGGTAGTTTCATATCAAGGTTGAGAAAATGTAGGATCTGGATGACTTGTGCATGTACTTCACTTGATGTGTTAAAGCTGTTTGACCAGTGTAGCATTAAATGGCATATGAGATAGTCTTGAAAAGATGCAAATCAGCTGATATAATTCTGATGCTTAAATAATATTTGACAATCACACTGCCAGAACTTTTTCTTACTCTATTGCCTTACTTAAATTTTTTGTTTGTTTACCCTTCTATATTTCTGTTCTGATATATGGTTGCAATCAACATGTTTCTTGTATTTAGGTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAGGTAGCGGTCCTTTTCAAATGTTCTAATTGTTTATTCGTATTCTTCTCAGTTATCAGAAAAAAAGTTCTTAATTTTTGCATGCAAATGATAATATTCTACCAGTAAAGTGTACACTCACTAAGCTTCTTGATTTTGTGTGGATCGGTCTCTTTCCATAACAATCACCATTGATTTTTTTTTTAATTTAAAAGTAGCTTCTGCTTTTCTATCGAATATAGTTAATTATAGCTGTCACCTCATATCTTTTACCACTTGTTTCCATCAGCAAAACATTTAAATTTGCTGCTTAAAAATGAGAAAGACTTGTCTCACCCGGTATTTTATCCCCCTTTTCAGCCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAGGTACACTATTTTTATGTTTTTTGTTTACTTGATTTTTTTTTCGATAGTTCAATTTCATGTTTCTTGTTGGAATGTTTCTGCAGGCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAGGTAAAATGTCATTGGTGTGAGTGTTGTAACTGCTCTTAGTTCTCCTGGGTGGGTTGAAACCTAGTTTATTGCTCATCATGTCCTTGTAATAGCAAGATTCTTGCATATGTTCTTTATGATAATTTAAAGTTTGTAAGTGATGTAATATCTGAGGAGCCAGTCTCTAAATTGAGTCCTCTTCTTACATGATTAACCTATATTCATGTATGACACTAAGGATTTGAAAGATGCCTACCCTGGATGACTGTCTTGGACAAGAGTATTGTTGCTGTTGGACGCAGAAAGCTTTAAACAGCTTTCCGAAGTATCAATTTAATTTCTGTGTAAGATCCTGCACAGAAGAAAGATATCATGAGTTAAATCCCACTGGAAACAAAATCATTAGGTGGTTTCTTCCCATTGTCTGCCAAAGTTGTTACTGATGGGTGGTGGGAGGTGGCAGGTATCCCGTGGAACTAGTCGAGGTGTGCACAAGCTGGCCCAGACACCACAATTTATTTTCCCTAAAAAATAGATATAATGAGTTGTATAAAAGGGAAAAGTTTTACCACACCTCTTATGGTGTTCGCCAAATCTCCCAGGTGGGGAACTACACATACAAGAAGGAAATTTGAGCTTGATGCAAATGGATGGGTGTCAAGAAAGATAGGATGTTATGGTTTAAGGGAACAGCCATCGTGAAGATCTGCTAATGATATTATGCAGTAAAGAAAAGGTGCAAGCTGGACATTGCACTTGCTTGGGGCATGCTTCGTATAGTTGATATTGGATAAAAGAACTAAATGCTTCTCTTCACTGGTATAGTCTGCTGAAAAGAAAGTCCAAGAACTACTGCAATTCCTCTTGTGTATATCAGGACACCTTCATTTATTCATTCCACAGACGAGTCAATATGTTGCTGTGAGTTCTACCTTTCTTCATATCAAGATCCAGGCTCTAAAGTATGAGTATTATCTCCATAAGAGTGAAACAGGAATTAACATAAGTGGAGAATAATAGCAATCCTGCTCTCTTCTTTTCGGTTTCTGTTTGTAAAGTTCTTCATCAGCATTTTTAGATGCTGATGTTTTCGGAATGAATGCAAGTTACCTTATGAAAAAGAAAACATAAGTCGAGAATATGATTATATTGAGTTGATCCAAAATGTGGAGAATAAGGATGAAGACTCTGAGTTGATCCGGAGATACAGAAACTTTTATAGTATTGTCAAAGAATAGTTTTATTGGGACAAATGCAAAAACAGGCTGAACATTGAGATAATGTGAAACGACCTTGGAAATTAAAACCTTCTCATATATCTACATACTGTTCGAGCTGCAAGTTTTGCCGTGTCACGACCCAATTTCTCGAGTCATGATGGCACCTACTATAACCCACCAGTAGGTAACCCGACCCGTAACCCGGAACAACGCACAATGGGTCTGAGGGTAGAAACTAAACAAGAGTAGGCAAAATTTACTACTCCCTCCGTTTAAAAACGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCTTTCCTTTTTGGCAACACTTTATCTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTATATGGCATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAGAAAGTCTTTTTTTTATTCTTAAACTCCGTTCCAAGTCAAACTAGGCTATCATTTTTGAAACGGAGGGAGTATAACAATATAAACAGGCGGAAGCAAACCAAAACATATATACAAATAAGGATCCCTCCCAGAACCTGGAAGTCACTAGTACAGATCTACCAACAAAACGAGTACAAGTCCCAAAAGTGAACCACTGAAACTAGACTGTCTCGAAAGGTAAAAGACAAGTCTATATATATACAGATGGAGACTGAAATAGTACAGAATGTCGTGTGCTCACCCTCGTCTCCAGATCAGACTGCTCCAAACTCGATCAACATTGGCTACTCGTGCTCGAACCTACATCACGAAAATAGATGCAAAGCATAGCATGAGTACCAAACACTAGGTACCCAGTATGCATCATAGGCTGACTAAACTTGAAAAGTAAAGCAATATGAAAAGAAGGAATAACACAACTAGAGGTCAAGAACGAAAGTCTAAGTAACAATGGAATGCACACGAGTGTAGAAAGAACTAACTAAAGTAATATATAAGCTAACTACACCTAACTGGACCCCCCATAAGCCCAGAAGGCACACTTGTGCGCAAGTTTAAATAAAAACTCAAACGGACCCTCATTAGCTCGACGAGTACAGAGAATAACTATAACTAAGGAGAATAGAACCCAAGGCCAAAGAACATCGAACTAGATGCTCAAAACCAATAAGTAGAATCTGAGGGTACGGAGGTCCGGACACTCACCAAAATTACACAAGTAGCCAATCACAAATATAAGTAACTGAGTCCGTACCTCTAACCGGATGCTCCGCATAAGTATGCGGATGGTCGAGGCCAGACTTTGAACCGGATGCTCTTCCAAAATTATCAATGAAGTCAAGGTCGAGCCTTAAATCCGGAAGCCCGACAAAGGTGTCAACTTTGAATTGCGGAGCGGAACTCATTGTTACTGATGTAGCTCGTGAAGCCGTAACATCAATGAAGTAAGGATAACTATCGCCGGAGCGAACTCCTAGTCTAGCTAAGGCCCAAACTATCAGCCTCTAGTCTGCTACACCAGTCTACAAGGATTTAAGCCGACCGAGCGAGGTCGGGGCAAAACTAAGTCCTGCCGGTTTGCATTTCTAAGGCAAGCTCTAGTCAAACCTAAACGAAGACCCAACATACTTCCAATTAAACCGTACTCCAACATACAAAGCATACAAGTACTCCACATAGCAAAGAAGGTCAATTAATAACATAAAGCATGCTCACAGTTACTCGATAGTTCTCAGAAATAGGTTGAAAACATGATTTTTAACACTTATGCATGATTCAATAACTACCCAACCCAAATCTCAACTAATCAACATGCATTCACATGTTCGAGTTCAATCTAAGAGAAGGAAATCGTAGCCTACCTGTAGGCAGATCACGCCGCGCTCCAAAAATCACTTCTTCGGAGCTTTCCCTTTCCGAATGGCCTTGAAAAGTTGACACACTATAAAAAATAGTCACAATGTTATTACGGTCGTTTAGACACTAAAATCGCAAGAAACTGAGACGGCCTAATTTCGCGGTTAAAACGGGAAAAGTGGGACCTGCATTGAAAATTCCAGGATTAACCCCAAATATAGGTCCTAAACAGCTCTCGGAACTTGTGTTCCAAAGTGGAACACAATTCGGGGCTTGAAACATTCCCAACACGAACATGCAACCAAAAACCCAATAATACGCTAAAATTCAACAACAATGGCAGCAACTATTTACAAGAATTTACCAGAAACGAAGGTTCAACTGCTAAAACCAATCACACCACGACGATCCTCACGAAATCCCCCACAATATACGCTCTTGAATCACCAGATTCGGACCTAAAATGGCCAAGAAATCTTCTTCTAAAAGTTTCCCAAAAGTTGAACTCGAAAATGAGCTATGACAGCAGTTAAAACACAATTTTTTACCTTTAACAAGACTTCAAATGTGAATTCTGTCCACGCCAACACGTTCTCCTCGAAAATTCACTCAAGTTAACCTCCTGAATCGCCCAAATCGGACCTTTATAGCTCAAGGTATCACACTTTTAAGAAGAAGGCTTAAGCTGAGTTGGGGCTTTAATAAAAGACGAAACTGGTCGCTATTAACCCCAAAATTCTGGTCCCTAAAAGGGCTGCACCAGATTTCAGCTTTGGCTAATTTCTTCAAAGTCTCCGACGGTGTGCTCCGAATTCGTTCGGAACCTGATAAAAATAAAACAGATATCTGCCCTACTAAATTCGACATTCCGGACTCAACGGCGCAGTCAAAATTTCCATCAGAGGTCATCTCGATAAAAAGTGGGTCCCACTTCCATCGTCCATTTTAAGTCAAAAAACACACAAGGGCTCGAAAAAATATCGGCAACCTCAGGACACAAAAGAAGGGTCATACTAGACCAAACTCGACATTCCGGAAACCTCAGAATGTTGACTAAAGTCAAACTTAGCCTTAAACTTAAAGTTAAAACGCCTAATCGCACCAACTAGCCTAAGATGACCCTTTCGGAGCTGATGAAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTTATAAGCTCCAAAAACACTAAAACTCACACAATAACCAAACGAACGACCAGCTGACCAAACTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGACGCACAAAAGACAAAACACAGAAATGACCAAGAGGGTCATTACATTACCTTTGATCGACCTTGGAAGTTGGACCCTATTCATATTTCTATGTAGTGTCAAGCTGCCAAGTTTTGTTGTAGATGAGTTTTGTCTTCTGTATTGACAATTCAAATTTGCACTTGGCTGGAAAAGGAAAACTTCAACCTTTTTACCTCGCTTTGCTCCATTTCTTTCAGTTGTCAGTTTGTCTGATGTGAAATGGAAACTCCATTTAGGTGACTAATTGATGCTTGCAGATAACTGGTTTTCCTCTTTCTTAAGCTTCTATGCGACCTAAGGTCCATAAACAACTAAACCGTGTCAGTGAGGGGCAGAGAGGAAAAAATAGGAAAAAATGTATGATATTTATTGAAAGATCTCTAGTTGATGTCACTTGGCAAAAAATAAGAATGGAGCTCCAGTTGTTGCTTTTCACAAGTTGTATATATGGTTGGCAACTTGATAAATGCCAGTAAATGGCTCTGCTGAGTCATTGAAACAATTTATACATACTTTGACACCTGCTTGGTGTCTAGTTATGAAAATTTTGACTTACCAAAAAAGATTCTAAGACTTCTGATACCTTGTTGCTTGCTGACTGTGTGAGAGCTTCACTTTTCTTTGTTGTACTGTCAGTTCCATTTTAAAGTTGCCTAATTCTTCTCTGCAATCCTGGTTAAATTTTTTGTCCTTCACCATTCTATTGAACCACTACTTCAGCTTCTTAGAGAATTGAAGTTGTCAGCCTTTGTATAGATTTCAGATTCTATGTTGACTACTTGATGGCTGTTGTGTGTGACTGATTGTTTCAGTCTTGACATGCATGCGTTAGTTAGTTTCCATGTATTGTTCTGCAACCATGCTACCAAGTCATTCAACAGGCTTTCTATTAATTGGTAATTTACATCCATTTTTTTTCTTCAGGCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAGGTACTATTTGTTGAGCTTTTCTGTGCTTGTTAGTTCTCTGAGTAATTCCCATAGTTTTGTTATTTCATCCAGCATCTTACATTTTGCCTCTGCATTTTTTCTTGTACTGTACAGAGCTACAAAGTTGGAACATTGTCTTGCTTCATCCATGGTATTCATAGAGAATTACAGATCTTCCATGAGAAAAGTTGCTCTCAAACTTTACCTGTTTGTCTCAAAACTTGGGATATATCCAGTACTAGTTTCTAGGTTACATATTGACTTCTGAGCTAGGCAGTTGGATTTATACCTCAAACTAAGAAATCTGAATGCTGCTTGAGTACATAGAGTGATGATTCCATAGAGATTGGTATTTGTTAATAACTAATAACAAACTTCTATCTCTGGCGTCAATGGACTATTGTGGTTTTGCAAGAATGCTTCTGTGCACGATATTTTCTGCTTGCTGTCACTTTGTCCTTAGCACGACTAAGAATTCTAAATAAGGGAGTCTGCTGACTAACCAATTACCTTTGTTAGATGCCCTACTGGGCGAAGGTCTGGCATGTATAGACAAGTAGACATGCCATATCATGGTGCTGTAGAAGACAAGTGATGTCTTGACTCTTCCCTCTCACGGCTTAGATGTAAATGAAGAATTAAATTCATTTTTCGTAACTCTGTATCAGTTTATGGGTTCTTTTCTATACATCCCCATTCACTTTATCAGTTATTGAGACACCTCTATGAAACTTGATTCATGTTTGGCTTGGAGTCTACTGAGTCATGAATACATATTTGATTGACTGTTCTACTACTATTAAGATCTTTTCACTGTCCAATATCACATTTAAGTCACAGCTTGCTAGCTACCAGGCTATACACTGGATTTTCTTTTACCACAGTTCTCCTTTTTCTCACATTTTCCCTCAAATATTTTGTACAGTTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAGGTAACTGCTATATTTGAACACTTCTACAACGTATTATCTGATTGTGTTTGCTGCTTTTGCCGATTTTCTGCTGCATTCTTCAATTACTTTATTGACTCTGGCTCCTCTTCTTTCTTTTCATCATCTGCTACATTTTGATTTTTTGTGGGATAGAGTTACCTGGTCCTGTATTGGTGGGAGGTTGTAGGAACTCTATGGAATTAGTGGAGGTGCGCTAGATCTGGCCAGACACCACATTTGTAAAAATACAATGTCGCTAAATTCGGTTAGCACAATCCAACTTCATCCCTGTATTCGCCATCTCTGGATGAAACCTAAATTTGGATTAACTTCCATACGGTACGAATATCTCCCCAGATCTTTTGGGATTGAAGCGTTACTGTTGTTGCCGTTGTTTCTTGATCCAAATCTGTCTGGATTAGATTCCACAATTTTTGGTTCAGGACTAGACTGAAATTGCCCCCATCTTAATCTGTATTATGGAAGCTGCCAGTGCATAGAACTATTTTCTTTTTGAAATTTCAAGTAATGTGGATTGAAGTCCATGAAGTACTCTTTGTTAATAGCTTGCAGTCTTTAGCTGGTGCTTAATCTAATGAAGGAAGTTGTTTTAGCATCTTTCTAGAATGTCCAAAGTTTTCTGTTAACATCCTTCTTACAGGGCAGAAAAAAAGGACTACTCTTTTTTGTTCACTTGTCTCTCTATTAACCTAAATCCAAATAGTTTTATTAAGGTGGTTATTTCTTTTCAGGAGCCTTAGATGTGCTAAGAACATGGCCCCTTGGATAAATGGGTATAGGCTTTAATTATTTGTGTGCTGGACGGAATTCCTACATGATAATTGATGTCACCTTTTCCCATTCCAGGGAGTGTTGAAAAGAAGTTCAATTCCATTAGAAGCCAGTTCCTTTGGGAAGGAAATGCTAACAGGAAAATTTTGATTTGACCAAATGGCATGAAAAAAAGACAATAAAGGAGGTGGATTGGGTGTTAAAAATTTTAAAGCATCATAACAAGAAGGGGTATTCCTTTGTGTAGTTCTTCTATGAAATTCTCAGGAATGTGCCGAACACCTTTTTATTCATTGTAATCATGCAAAGCAGATATGAATTCTGTTCCTAACTCAGAGTGATATCAGGTATGAATTAGGTGATGCCAAAGAATGTGAGTGATCTATTGAATTGTTGGCAAAATCAGAATGTCGGGAAAATGAAATGCAAATCTGGGAAATGATACCTCTTTGCATCTTTTGTACCCTTTGGTTGGAAAGGACTACACGATGTTTTGAGAATTGGGAGAATCATTTAGCTAGCGTTAAGAATAGTCGTCTTCTTAATCTTTACTTGTGGTGTTGGGTACGTATGGCAGAAGACTTAGATCAGTACATGGATTTTATAGAAGCTTTGAGAATGTAACAGTTGCAGTTGCGCTGTAGTTTGTATGCTTTTAGTACCTTCTTGGTACTTATCGGGAAAAAAATGTGGTTATTTCTTTTTCGATACCTGAGACTTTACATATCAGTTGATGATTTCTCAGTTTCGACATTATACACCAAAGGATATATTTCAGAATACTTTATTGAATATGATGCTATGGTAGAGCTTTTCTTTAATATTTGTTTCTTTGCTGTCAATGTGCAGGTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAGGTTAGTTGTTTCAAACTAGTAAATTAAGCTGGAGGTGCAATATTGATTGTAGGAGCAGGAAAGAGCAAGGCATCCTGTATAAATTCTTGCAGGATGGAAGTTGTATACCCATATAATAAGAGTTATTATGTTACAGTGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTTGTAAGTGATTCAAACAACCTAACAAGCTACTACTGATTCTATTTTGTTTGTTATTGGAGACGGCCTTAGTAAATACCTGGACATCATTTAAGATACTAGTTTATTACTGGCTAAAGGAGGGGTTTTCTTTTACACAGGTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAGGTATATTAATCATGGCTAATTATCATTTTTCTATTTCTGTATCATCAGAATGTTCTGTGGTTAGATTGGCTCATTATTTTCCACTGCTTTCTTTCCTGGGACAACTATTACTTTTGAATGGATGTATAACTTTTATGTTCCTATACTTGAGGCATTTATCAGTGCCAGTTTACTGCAATATTTGATTCTTAGAAGACTTGGCTCATTTAAGAAATGTCCAAGAACATTTGTCAACGGTAAATTCTGACTTCGAATGCCTTGTACAAGGGAACAAGGAAGATGTATCACAGTAATTTTATTAAGATTCAATATGAAGAGCAGGTCTCTCTTATGATAAAAATGTAACATTGTAATTTAGTTACATTTCCATATGAGAGTACTTGGTATGATGAACATATAAAGGATTTCTTTCAGTTTCACTGTTTGTGCTAGCTTTTTCCTTTCCTTATATTCTAATCCGGCTTGTACTAGGATCTTTATCCTAGAGCAGCATCTGTTGTCCAGTTATAGGACTTCAACTGATGCATGTCAGGTCTTGTCTCTGTAGCAACAGAGATTATGCTAATTTCTCCATTCGTAGAGGACGGTCGGGACTTCTATCAGCACTCTCTTCCTGAACCATCTGACATGTTACAATTTAATTCGCAGAACTTATTTCTCTATGGTTATGGTGCTATATTCAACTTTCTAGCCATTCTTGGGATTGCTGTATTTAA</genome_strand>
        <mrna_strand>TCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAGGTCACTTCTTATCTTTTTGCTTATGTTTAATGTTAAAATAAGTTTGATATGTAGATCTATTTCATGTATGGATGCTTGATCCCTCTCAAATTCAATACTATCTGTTGTTATCATGCAAAAAGATTTCATTTTTTTATCCCTTGGATAGTGAGATCTGCGCTTTCTAAATTTCGCATTTTCATCATCTTTGGGACAAGTGAAGTCAGGACTTATTCAGCTGCAGCTGCACTAAGAGTTCACAAAGAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG...................................................................................GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG........................................................................................................................................TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTT.........................................................................................................................................GTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTATTTCTCTATGGTTATGGTGCTATATTCAACTTTCTAGCCATTCTTGGGATTGCTGTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322248" ref_strand="+" ref_description="SGN-U322248        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G59360.2 | Symbol: None | nucleotide-sugar transporter family protein, low similarity to SP:P78382 CMP-sialic acid transporter {Homo sapiens}; contains Pfam profile PF04142: Nucleotide-sugar transporter | chr3:21946256-21951227 REVERSE | Aliases: None (evalue: 5e-112, score=371) genbank/nr: gi|18411150|ref|NP_567083.1| transporter-related protein [Arabidopsis thaliana] gi|30694978|ref|NP_850721.1| transporter-related protein [Arabidopsis thaliana] gi|13430658|gb|AAK25951.1| putative transporter protein [Arabidopsis thaliana] gi|14532830|gb|AAK64097.1| putative transporter protein [Arabidopsis thaliana](evalue: 3e-110, score=371)">
      <seq>agtgaaggagcccttttacaactcttaatacaaccaaacaaactctttcacaattcccttcctaaatctccaaatttcaactttcactccactcgtctcagctcaactccatccgtcggtcggtgagccggacttatctggatctggccggaatatttgtcttcccgccaattctctcacaggtgagctgaaatactaagcagttgactcatgaagaaaggtatggcagaatgcgctgtctgtcattccaagcttgtttctccatctgtaaaaactatttcaagggcatatgatcgacacagaagcaagatttcatcaaagcaacgtgctctcaatgtcctattggttgtaggagattgtatgctggttggtttacagcctgttttggtatttatgtcgaaagtggatggaaaattcaagtttagtcccgtaagtgtcaacttcttgacagaggcgacaaaagtcgtctttgcaataataatgcttttaatccaggccaggcatcaaaaggttggagaaaagccacttctttcaatatccacatttgtccaggctgcaagaaacaatgtccttctcactgtaccagcactactctatgccataaacaactacctaaagttcatcatgcagttatatttcaatccagcaacagtgaagatgctaagcaatctgaaggttttggttattgcagtgctgttgaaatttatcatgaaaaggcgattttccgtaattcagtgggaggctcttgctttgctgctaattgggataagcattaatcaacttcgatcccttcctgaaggcaccacttctttggctcttccagttaccacaattgcctacatctatacactgatttttgtaactgtgccttctatggccctcagtattcaatgagtatgctttgaagagtcaatatgacactagcatatatctccagaacttatttctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="78043" stop="66617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77743" g_stop="77562" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77561" i_stop="76890" i_length="672">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76889" g_stop="76694" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="378" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76357" g_stop="76241" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="495" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76157" g_stop="76101" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="552" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76100" i_stop="70803" i_length="5298">
            <donor d_prob="0.862" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70802" g_stop="70725" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="630" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70724" i_stop="69800" i_length="925">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69799" g_stop="69755" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="675" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69754" i_stop="68114" i_length="1641">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68113" g_stop="68054" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="735" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67917" g_stop="67795" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="858" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67794" i_stop="67658" i_length="137">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67657" g_stop="67580" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="937" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67579" i_stop="66932" i_length="648">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.211" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66931" g_stop="66917" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="938" r_stop="952" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U322248" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>951</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77743" e_stop="77562"/>
          <exon e_start="76889" e_stop="76694"/>
          <exon e_start="76357" e_stop="76241"/>
          <exon e_start="76157" e_stop="76101"/>
          <exon e_start="70802" e_stop="70725"/>
          <exon e_start="69799" e_stop="69755"/>
          <exon e_start="68113" e_stop="68054"/>
          <exon e_start="67917" e_stop="67795"/>
          <exon e_start="67657" e_stop="67580"/>
          <exon e_start="66931" e_stop="66917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGGAGCCCTTTTACAACTCTTAATACAACCAAACAAACTCTTTCACAATTCCCTTCCTAAATCTCCAAATTTCAACTTTCACTCCACTCGTCTCAGCTCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAGGTCACTTCTTCTCTTTTTGCTTATGTTTAATGTTAAAATAAGTTTGATATGTAGATCTATTTCATGTATGGATGCTTGATCCCTCTCAAATTCAATACTATCTGTTGTTATCATGCAAAAAGATTTCATTTTTTTATCCCTTGGATAGTGAGATCTGCGCTTTCTAAATTTCGCATTTTCATCATCTTTGGGACAAGTGAAGTCAGGACTTATTCAGCTGCAGCTGCACTAAGAGTTCACAAAGAACAAGTAGGTATCTTTGTGTATCCATTATAGATGTGTGCATGCTATCAAGTACCTCACACCCGTGTTATACCCATTTGACATCTAGGGGATGAATGAATGATACATGCAATGTACATATTTGTTATGCGGTTTGGCTTGATGGTAGTTTCATATCAAGGTTGAGAAAATGTAGGATCTGGATGACTTGTGCATGTACTTCACTTGATGTGTTAAAGCTGTTTGACCAGTGTAGCATTAAATGGCATATGAGATAGTCTTGAAAAGATGCAAATCAGCTGATATAATTCTGATGCTTAAATAATATTTGACAATCACACTGCCAGAACTTTTTCTTACTCTATTGCCTTACTTAAATTTTTTGTTTGTTTACCCTTCTATATTTCTGTTCTGATATATGGTTGCAATCAACATGTTTCTTGTATTTAGGTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAGGTAGCGGTCCTTTTCAAATGTTCTAATTGTTTATTCGTATTCTTCTCAGTTATCAGAAAAAAAGTTCTTAATTTTTGCATGCAAATGATAATATTCTACCAGTAAAGTGTACACTCACTAAGCTTCTTGATTTTGTGTGGATCGGTCTCTTTCCATAACAATCACCATTGATTTTTTTTTTAATTTAAAAGTAGCTTCTGCTTTTCTATCGAATATAGTTAATTATAGCTGTCACCTCATATCTTTTACCACTTGTTTCCATCAGCAAAACATTTAAATTTGCTGCTTAAAAATGAGAAAGACTTGTCTCACCCGGTATTTTATCCCCCTTTTCAGCCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAGGTACACTATTTTTATGTTTTTTGTTTACTTGATTTTTTTTTCGATAGTTCAATTTCATGTTTCTTGTTGGAATGTTTCTGCAGGCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAGGTAAAATGTCATTGGTGTGAGTGTTGTAACTGCTCTTAGTTCTCCTGGGTGGGTTGAAACCTAGTTTATTGCTCATCATGTCCTTGTAATAGCAAGATTCTTGCATATGTTCTTTATGATAATTTAAAGTTTGTAAGTGATGTAATATCTGAGGAGCCAGTCTCTAAATTGAGTCCTCTTCTTACATGATTAACCTATATTCATGTATGACACTAAGGATTTGAAAGATGCCTACCCTGGATGACTGTCTTGGACAAGAGTATTGTTGCTGTTGGACGCAGAAAGCTTTAAACAGCTTTCCGAAGTATCAATTTAATTTCTGTGTAAGATCCTGCACAGAAGAAAGATATCATGAGTTAAATCCCACTGGAAACAAAATCATTAGGTGGTTTCTTCCCATTGTCTGCCAAAGTTGTTACTGATGGGTGGTGGGAGGTGGCAGGTATCCCGTGGAACTAGTCGAGGTGTGCACAAGCTGGCCCAGACACCACAATTTATTTTCCCTAAAAAATAGATATAATGAGTTGTATAAAAGGGAAAAGTTTTACCACACCTCTTATGGTGTTCGCCAAATCTCCCAGGTGGGGAACTACACATACAAGAAGGAAATTTGAGCTTGATGCAAATGGATGGGTGTCAAGAAAGATAGGATGTTATGGTTTAAGGGAACAGCCATCGTGAAGATCTGCTAATGATATTATGCAGTAAAGAAAAGGTGCAAGCTGGACATTGCACTTGCTTGGGGCATGCTTCGTATAGTTGATATTGGATAAAAGAACTAAATGCTTCTCTTCACTGGTATAGTCTGCTGAAAAGAAAGTCCAAGAACTACTGCAATTCCTCTTGTGTATATCAGGACACCTTCATTTATTCATTCCACAGACGAGTCAATATGTTGCTGTGAGTTCTACCTTTCTTCATATCAAGATCCAGGCTCTAAAGTATGAGTATTATCTCCATAAGAGTGAAACAGGAATTAACATAAGTGGAGAATAATAGCAATCCTGCTCTCTTCTTTTCGGTTTCTGTTTGTAAAGTTCTTCATCAGCATTTTTAGATGCTGATGTTTTCGGAATGAATGCAAGTTACCTTATGAAAAAGAAAACATAAGTCGAGAATATGATTATATTGAGTTGATCCAAAATGTGGAGAATAAGGATGAAGACTCTGAGTTGATCCGGAGATACAGAAACTTTTATAGTATTGTCAAAGAATAGTTTTATTGGGACAAATGCAAAAACAGGCTGAACATTGAGATAATGTGAAACGACCTTGGAAATTAAAACCTTCTCATATATCTACATACTGTTCGAGCTGCAAGTTTTGCCGTGTCACGACCCAATTTCTCGAGTCATGATGGCACCTACTATAACCCACCAGTAGGTAACCCGACCCGTAACCCGGAACAACGCACAATGGGTCTGAGGGTAGAAACTAAACAAGAGTAGGCAAAATTTACTACTCCCTCCGTTTAAAAACGAATGTCCCTATTTCCTTTTTAGTTTGTTTCAAAAAGAATGTCCCTTTCCTTTTTGGCAACACTTTATCTTTAACTTTCCACGTGGCATGTTTAAGACCACAAGATTATATGGCATTTTGGTACATTTGATATAACTTTAATTTAGAACCACAAGATTAGAAAGTCTTTTTTTTATTCTTAAACTCCGTTCCAAGTCAAACTAGGCTATCATTTTTGAAACGGAGGGAGTATAACAATATAAACAGGCGGAAGCAAACCAAAACATATATACAAATAAGGATCCCTCCCAGAACCTGGAAGTCACTAGTACAGATCTACCAACAAAACGAGTACAAGTCCCAAAAGTGAACCACTGAAACTAGACTGTCTCGAAAGGTAAAAGACAAGTCTATATATATACAGATGGAGACTGAAATAGTACAGAATGTCGTGTGCTCACCCTCGTCTCCAGATCAGACTGCTCCAAACTCGATCAACATTGGCTACTCGTGCTCGAACCTACATCACGAAAATAGATGCAAAGCATAGCATGAGTACCAAACACTAGGTACCCAGTATGCATCATAGGCTGACTAAACTTGAAAAGTAAAGCAATATGAAAAGAAGGAATAACACAACTAGAGGTCAAGAACGAAAGTCTAAGTAACAATGGAATGCACACGAGTGTAGAAAGAACTAACTAAAGTAATATATAAGCTAACTACACCTAACTGGACCCCCCATAAGCCCAGAAGGCACACTTGTGCGCAAGTTTAAATAAAAACTCAAACGGACCCTCATTAGCTCGACGAGTACAGAGAATAACTATAACTAAGGAGAATAGAACCCAAGGCCAAAGAACATCGAACTAGATGCTCAAAACCAATAAGTAGAATCTGAGGGTACGGAGGTCCGGACACTCACCAAAATTACACAAGTAGCCAATCACAAATATAAGTAACTGAGTCCGTACCTCTAACCGGATGCTCCGCATAAGTATGCGGATGGTCGAGGCCAGACTTTGAACCGGATGCTCTTCCAAAATTATCAATGAAGTCAAGGTCGAGCCTTAAATCCGGAAGCCCGACAAAGGTGTCAACTTTGAATTGCGGAGCGGAACTCATTGTTACTGATGTAGCTCGTGAAGCCGTAACATCAATGAAGTAAGGATAACTATCGCCGGAGCGAACTCCTAGTCTAGCTAAGGCCCAAACTATCAGCCTCTAGTCTGCTACACCAGTCTACAAGGATTTAAGCCGACCGAGCGAGGTCGGGGCAAAACTAAGTCCTGCCGGTTTGCATTTCTAAGGCAAGCTCTAGTCAAACCTAAACGAAGACCCAACATACTTCCAATTAAACCGTACTCCAACATACAAAGCATACAAGTACTCCACATAGCAAAGAAGGTCAATTAATAACATAAAGCATGCTCACAGTTACTCGATAGTTCTCAGAAATAGGTTGAAAACATGATTTTTAACACTTATGCATGATTCAATAACTACCCAACCCAAATCTCAACTAATCAACATGCATTCACATGTTCGAGTTCAATCTAAGAGAAGGAAATCGTAGCCTACCTGTAGGCAGATCACGCCGCGCTCCAAAAATCACTTCTTCGGAGCTTTCCCTTTCCGAATGGCCTTGAAAAGTTGACACACTATAAAAAATAGTCACAATGTTATTACGGTCGTTTAGACACTAAAATCGCAAGAAACTGAGACGGCCTAATTTCGCGGTTAAAACGGGAAAAGTGGGACCTGCATTGAAAATTCCAGGATTAACCCCAAATATAGGTCCTAAACAGCTCTCGGAACTTGTGTTCCAAAGTGGAACACAATTCGGGGCTTGAAACATTCCCAACACGAACATGCAACCAAAAACCCAATAATACGCTAAAATTCAACAACAATGGCAGCAACTATTTACAAGAATTTACCAGAAACGAAGGTTCAACTGCTAAAACCAATCACACCACGACGATCCTCACGAAATCCCCCACAATATACGCTCTTGAATCACCAGATTCGGACCTAAAATGGCCAAGAAATCTTCTTCTAAAAGTTTCCCAAAAGTTGAACTCGAAAATGAGCTATGACAGCAGTTAAAACACAATTTTTTACCTTTAACAAGACTTCAAATGTGAATTCTGTCCACGCCAACACGTTCTCCTCGAAAATTCACTCAAGTTAACCTCCTGAATCGCCCAAATCGGACCTTTATAGCTCAAGGTATCACACTTTTAAGAAGAAGGCTTAAGCTGAGTTGGGGCTTTAATAAAAGACGAAACTGGTCGCTATTAACCCCAAAATTCTGGTCCCTAAAAGGGCTGCACCAGATTTCAGCTTTGGCTAATTTCTTCAAAGTCTCCGACGGTGTGCTCCGAATTCGTTCGGAACCTGATAAAAATAAAACAGATATCTGCCCTACTAAATTCGACATTCCGGACTCAACGGCGCAGTCAAAATTTCCATCAGAGGTCATCTCGATAAAAAGTGGGTCCCACTTCCATCGTCCATTTTAAGTCAAAAAACACACAAGGGCTCGAAAAAATATCGGCAACCTCAGGACACAAAAGAAGGGTCATACTAGACCAAACTCGACATTCCGGAAACCTCAGAATGTTGACTAAAGTCAAACTTAGCCTTAAACTTAAAGTTAAAACGCCTAATCGCACCAACTAGCCTAAGATGACCCTTTCGGAGCTGATGAAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTTATAAGCTCCAAAAACACTAAAACTCACACAATAACCAAACGAACGACCAGCTGACCAAACTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGACGCACAAAAGACAAAACACAGAAATGACCAAGAGGGTCATTACATTACCTTTGATCGACCTTGGAAGTTGGACCCTATTCATATTTCTATGTAGTGTCAAGCTGCCAAGTTTTGTTGTAGATGAGTTTTGTCTTCTGTATTGACAATTCAAATTTGCACTTGGCTGGAAAAGGAAAACTTCAACCTTTTTACCTCGCTTTGCTCCATTTCTTTCAGTTGTCAGTTTGTCTGATGTGAAATGGAAACTCCATTTAGGTGACTAATTGATGCTTGCAGATAACTGGTTTTCCTCTTTCTTAAGCTTCTATGCGACCTAAGGTCCATAAACAACTAAACCGTGTCAGTGAGGGGCAGAGAGGAAAAAATAGGAAAAAATGTATGATATTTATTGAAAGATCTCTAGTTGATGTCACTTGGCAAAAAATAAGAATGGAGCTCCAGTTGTTGCTTTTCACAAGTTGTATATATGGTTGGCAACTTGATAAATGCCAGTAAATGGCTCTGCTGAGTCATTGAAACAATTTATACATACTTTGACACCTGCTTGGTGTCTAGTTATGAAAATTTTGACTTACCAAAAAAGATTCTAAGACTTCTGATACCTTGTTGCTTGCTGACTGTGTGAGAGCTTCACTTTTCTTTGTTGTACTGTCAGTTCCATTTTAAAGTTGCCTAATTCTTCTCTGCAATCCTGGTTAAATTTTTTGTCCTTCACCATTCTATTGAACCACTACTTCAGCTTCTTAGAGAATTGAAGTTGTCAGCCTTTGTATAGATTTCAGATTCTATGTTGACTACTTGATGGCTGTTGTGTGTGACTGATTGTTTCAGTCTTGACATGCATGCGTTAGTTAGTTTCCATGTATTGTTCTGCAACCATGCTACCAAGTCATTCAACAGGCTTTCTATTAATTGGTAATTTACATCCATTTTTTTTCTTCAGGCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAGGTACTATTTGTTGAGCTTTTCTGTGCTTGTTAGTTCTCTGAGTAATTCCCATAGTTTTGTTATTTCATCCAGCATCTTACATTTTGCCTCTGCATTTTTTCTTGTACTGTACAGAGCTACAAAGTTGGAACATTGTCTTGCTTCATCCATGGTATTCATAGAGAATTACAGATCTTCCATGAGAAAAGTTGCTCTCAAACTTTACCTGTTTGTCTCAAAACTTGGGATATATCCAGTACTAGTTTCTAGGTTACATATTGACTTCTGAGCTAGGCAGTTGGATTTATACCTCAAACTAAGAAATCTGAATGCTGCTTGAGTACATAGAGTGATGATTCCATAGAGATTGGTATTTGTTAATAACTAATAACAAACTTCTATCTCTGGCGTCAATGGACTATTGTGGTTTTGCAAGAATGCTTCTGTGCACGATATTTTCTGCTTGCTGTCACTTTGTCCTTAGCACGACTAAGAATTCTAAATAAGGGAGTCTGCTGACTAACCAATTACCTTTGTTAGATGCCCTACTGGGCGAAGGTCTGGCATGTATAGACAAGTAGACATGCCATATCATGGTGCTGTAGAAGACAAGTGATGTCTTGACTCTTCCCTCTCACGGCTTAGATGTAAATGAAGAATTAAATTCATTTTTCGTAACTCTGTATCAGTTTATGGGTTCTTTTCTATACATCCCCATTCACTTTATCAGTTATTGAGACACCTCTATGAAACTTGATTCATGTTTGGCTTGGAGTCTACTGAGTCATGAATACATATTTGATTGACTGTTCTACTACTATTAAGATCTTTTCACTGTCCAATATCACATTTAAGTCACAGCTTGCTAGCTACCAGGCTATACACTGGATTTTCTTTTACCACAGTTCTCCTTTTTCTCACATTTTCCCTCAAATATTTTGTACAGTTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAGGTAACTGCTATATTTGAACACTTCTACAACGTATTATCTGATTGTGTTTGCTGCTTTTGCCGATTTTCTGCTGCATTCTTCAATTACTTTATTGACTCTGGCTCCTCTTCTTTCTTTTCATCATCTGCTACATTTTGATTTTTTGTGGGATAGAGTTACCTGGTCCTGTATTGGTGGGAGGTTGTAGGAACTCTATGGAATTAGTGGAGGTGCGCTAGATCTGGCCAGACACCACATTTGTAAAAATACAATGTCGCTAAATTCGGTTAGCACAATCCAACTTCATCCCTGTATTCGCCATCTCTGGATGAAACCTAAATTTGGATTAACTTCCATACGGTACGAATATCTCCCCAGATCTTTTGGGATTGAAGCGTTACTGTTGTTGCCGTTGTTTCTTGATCCAAATCTGTCTGGATTAGATTCCACAATTTTTGGTTCAGGACTAGACTGAAATTGCCCCCATCTTAATCTGTATTATGGAAGCTGCCAGTGCATAGAACTATTTTCTTTTTGAAATTTCAAGTAATGTGGATTGAAGTCCATGAAGTACTCTTTGTTAATAGCTTGCAGTCTTTAGCTGGTGCTTAATCTAATGAAGGAAGTTGTTTTAGCATCTTTCTAGAATGTCCAAAGTTTTCTGTTAACATCCTTCTTACAGGGCAGAAAAAAAGGACTACTCTTTTTTGTTCACTTGTCTCTCTATTAACCTAAATCCAAATAGTTTTATTAAGGTGGTTATTTCTTTTCAGGAGCCTTAGATGTGCTAAGAACATGGCCCCTTGGATAAATGGGTATAGGCTTTAATTATTTGTGTGCTGGACGGAATTCCTACATGATAATTGATGTCACCTTTTCCCATTCCAGGGAGTGTTGAAAAGAAGTTCAATTCCATTAGAAGCCAGTTCCTTTGGGAAGGAAATGCTAACAGGAAAATTTTGATTTGACCAAATGGCATGAAAAAAAGACAATAAAGGAGGTGGATTGGGTGTTAAAAATTTTAAAGCATCATAACAAGAAGGGGTATTCCTTTGTGTAGTTCTTCTATGAAATTCTCAGGAATGTGCCGAACACCTTTTTATTCATTGTAATCATGCAAAGCAGATATGAATTCTGTTCCTAACTCAGAGTGATATCAGGTATGAATTAGGTGATGCCAAAGAATGTGAGTGATCTATTGAATTGTTGGCAAAATCAGAATGTCGGGAAAATGAAATGCAAATCTGGGAAATGATACCTCTTTGCATCTTTTGTACCCTTTGGTTGGAAAGGACTACACGATGTTTTGAGAATTGGGAGAATCATTTAGCTAGCGTTAAGAATAGTCGTCTTCTTAATCTTTACTTGTGGTGTTGGGTACGTATGGCAGAAGACTTAGATCAGTACATGGATTTTATAGAAGCTTTGAGAATGTAACAGTTGCAGTTGCGCTGTAGTTTGTATGCTTTTAGTACCTTCTTGGTACTTATCGGGAAAAAAATGTGGTTATTTCTTTTTCGATACCTGAGACTTTACATATCAGTTGATGATTTCTCAGTTTCGACATTATACACCAAAGGATATATTTCAGAATACTTTATTGAATATGATGCTATGGTAGAGCTTTTCTTTAATATTTGTTTCTTTGCTGTCAATGTGCAGGTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAGGTTAGTTGTTTCAAACTAGTAAATTAAGCTGGAGGTGCAATATTGATTGTAGGAGCAGGAAAGAGCAAGGCATCCTGTATAAATTCTTGCAGGATGGAAGTTGTATACCCATATAATAAGAGTTATTATGTTACAGTGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTTGTAAGTGATTCAAACAACCTAACAAGCTACTACTGATTCTATTTTGTTTGTTATTGGAGACGGCCTTAGTAAATACCTGGACATCATTTAAGATACTAGTTTATTACTGGCTAAAGGAGGGGTTTTCTTTTACACAGGTAACTGTGCCTTCTATGG-CCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAGGTATATTAATCATGGCTAATTATCATTTTTCTATTTCTGTATCATCAGAATGTTCTGTGGTTAGATTGGCTCATTATTTTCCACTGCTTTCTTTCCTGGGACAACTATTACTTTTGAATGGATGTATAACTTTTATGTTCCTATACTTGAGGCATTTATCAGTGCCAGTTTACTGCAATATTTGATTCTTAGAAGACTTGGCTCATTTAAGAAATGTCCAAGAACATTTGTCAACGGTAAATTCTGACTTCGAATGCCTTGTACAAGGGAACAAGGAAGATGTATCACAGTAATTTTATTAAGATTCAATATGAAGAGCAGGTCTCTCTTATGATAAAAATGTAACATTGTAATTTAGTTACATTTCCATATGAGAGTACTTGGTATGATGAACATATAAAGGATTTCTTTCAGTTTCACTGTTTGTGCTAGCTTTTTCCTTTCCTTATATTCTAATCCGGCTTGTACTAGGATCTTTATCCTAGAGCAGCATCTGTTGTCCAGTTATAGGACTTCAACTGATGCATGTCAGGTCTTGTCTCTGTAGCAACAGAGATTATGCTAATTTCTCCATTCGTAGAGGACGGTCGGGACTTCTATCAGCACTCTCTTCCTGAACCATCTGACATGTTACAATTTAATTCGCAGAACTTATTTCTCTAT</genome_strand>
        <mrna_strand>AGTGAAGGAGCCCTTTTACAACTCTTAATACAACCAAACAAACTCTTTCACAATTCCCTTCCTAAATCTCCAAATTTCAACTTTCACTCCACTCGTCTCAGCTCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAAAGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTAAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG................................................................................................................................................................................................................................................................................................................................................CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG...................................................................................GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAAGAAACAATGTCCTTCTCACTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG........................................................................................................................................TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTT.........................................................................................................................................GTAACTGTGCCTTCTATGGCCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTATTTCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346700" ref_strand="-" ref_description="SGN-U346700        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gaattcctaataaggtggaggtggtgatggtgaaggtggcggaggagacttgtagtaataaggtggaggtggtgatggtgaaggtggtggaggtgacttgtagtaataaggtggaggtggtgagtgagaaggaggtggtggggacttgtagacgtatggtggtggtggagaaggtgatggtggtggtggggacttgtacacgtacggtggtggaggagagggagaaggaggtggcggggacttgtacacgtacggtggtggaggagagggagaaggaggtgggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="82964" stop="81706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82673" g_stop="82550" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82549" i_stop="82214" i_length="336">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82213" g_stop="82047" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="288" r_length="166" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U346700" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346700" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82673" e_stop="82550"/>
          <exon e_start="82213" e_stop="82047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGCGGAGGAGACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGTGGAGGTGACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGTGGAGGAGACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGAGGTGGAGACTTGTAATAATAAGGTGGAGGTGGTGATGGTGATGGAGGTGGTGGAGACTTGTAGTAGTAAGGTGGTGGTGGTGAGGGATCAGGTGGTGGAGGGGACTTGTAGTAGTATGGTGGTGGTGGGGAAGGTGATGGTGGTGGCGGAGACTTGTAATAGTAAGGTGGTGGAGGAGATGGTGATGGAGGTGGTGGGGATTTGTAGTAGTAAGGTGGTGGAGGAGATGGTGAGGGTGGAGGAGGTGATTTATAGTAGTAAGGTGGTGGAGGAGAGGGAGAAGGAGGTGGTGGGGACTTGTAGACGTATGGTGGTGGTGGAGAAGGTGATGGTGGTGGTGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGGCGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGGCGGGGAC</genome_strand>
        <mrna_strand>GAATT--CCTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGCGGAGGAGACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGTGGAGGTGACTTGTAGTAATAAGGTGGAGGTGGTG................................................................................................................................................................................................................................................................................................................................................AGTGAGAAGGAGGTGGTGGGGACTTGTAGACGTATGGTGGTGGTGGAGAAGGTGATGGTGGTGGTGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGGCGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGG-GAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313101" ref_strand="+" ref_description="SGN-U313101        Tomato 200607 #1 [20 ESTs aligned]">
      <seq>ccatctcctccaccaccatactattacaagtctcctccaccaccatcaccatctcctcctccaccatactactacaagtccccaccaccaccatcaccgtctcctcctccaccatactactacaaatcaccaccacccccatcaccatcaccaccccctccctactactatcactctccacctccacccgtgaagtctcctcctcctccatactactacagctcacctcccccacccgtaaaatcacctcctcctccagtatacatctatggttctccgccaccaccagtccactactaagcagttggaaaagcttggccattttccacaaccactcaaatttcagtttcagtcacaaaataagtgatgggttcttgaggagaagattaatagttccatgttcaaatgcaattaataagatgttcaactttgcaattgagaggttgattcctagtgacttggaccactttgcttctgcttctctggtttccttattacacattgttctctgtgtgtcttcacgtggaaagtggcttaaatagttggaaatagtaattatacatcatctagtgtacaatttcatatgttgcttctttatagtaataataatttattattattatatgtataggctttgtaatttgattcgttttgctcttaattattgttggccgtctcctagtgcctacttgtgcttttgtgcaccaaatcaataaagagatgaattttgttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="87500" stop="86084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87200" g_stop="86862" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86778" g_stop="86384" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="734" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.254" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86216" g_stop="86201" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="750" r_length="16" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="780" polyA_stop="830"/>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U313101" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87200" e_stop="86862"/>
          <exon e_start="86778" e_stop="86384"/>
          <exon e_start="86216" e_stop="86201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAAGTAAGTTGAATTTTACTTTAAAATGTCTTTGTTAGTTTTACCTAAGATAAAGGTCTCTAATTAATATCAACAATTGTTTGCAGATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCACTTTGCTTTTATTTTTCCATCAATTTTTCTCTTTACCTGAAAAAGACCGATCGATAAATAATACAACCCTCTTCATTCATTACATGTGATGATAATTATTATATATATATATTCTTCCTCTTCTTCATAACATGTGATGATAATTTATTGTTTCCCAAAAACCTCAGAAAATTAAATAAGAAA</genome_strand>
        <mrna_strand>CCATCTCCTCCACCACCATACTATTACAAGTCTCCTCCACCACCATCACCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA...................................................................................ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA.......................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324147" ref_strand="+" ref_description="SGN-U324147        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | Got1-like family protein, contains Pfam PF04178: Got1-like family profile; contains 4 transmembrane domains; | chr1:1730298-1732623 FORWARD | Aliases: None(evalue: 2e-25, score=112) genbank/nr: gi|22329359|ref|NP_683279.1| expressed protein [Arabidopsis thaliana] gi|30679437|ref|NP_850935.1| expressed protein [Arabidopsis thaliana] gi|26452699|dbj|BAC43432.1| unknown protein [Arabidopsis thaliana] gi|28973521|gb|AAO64085.1| unknown protein [Arabidopsis thaliana](evalue: 2e-23, score=112)">
      <seq>ttgtgcttagaaaagaagaaaaacaagagtaagagcgcagctgaatatcatttgcggggaacccatctgaattgttgagagaaggtggtgaatctaagtggaagatattgcaactctgatttcagaaagagacacactagcagcgagatgacatatgaattagatgaacaaaaaaaggttgggttaggtctcattggatttggcatctttttcacttttcttgccataatgttgttcttcgacaggggtttgcttgcgctggcaaatatacttttgttagcaggtgtagcacttctgttgggtttgcgttctacattacagctcttcaaagtaaactacaagggcacaatatcatttatgcttgggctctttctcatatttgttcgctggccagttgtgggtatcattgtggaaatatatggatgcattattctcttcggttgtttctggccatccatcaaggtttttcttttccagattcctgtatttggatggattctgcagtatcctgccctgcttcttgaccgctttcgtagctgactgactgatttgtctactccagttatcctgtttgtaaaagaggaagaatatactgagctagggttgtttgtcatgtgatgcagattgctgtcacctttatcttcaaatgtatattagatgttgattaggattataataatcatcagttctgaagtagcaaatcttgttatcaagttttcatatactatcctatccgcctttttctgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0058A04-I962s/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0058A04.1" temp_strand="-" temp_description="C09SLm0058A04.1  EU139074.1 htgs_phase:1 submitted_to_sgn_as:gb|EU139074.1| upload_account_name:spain (1 - 96875)">
        <position start="93053" stop="87717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92753" g_stop="92654" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92653" i_stop="92307" i_length="347">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92306" g_stop="92232" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="175" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92231" i_stop="92102" i_length="130">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92101" g_stop="92010" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="267" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92009" i_stop="91942" i_length="68">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91941" g_stop="91867" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="342" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91866" i_stop="89251" i_length="2616">
            <donor d_prob="0.433" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89250" g_stop="89153" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="440" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89152" i_stop="89055" i_length="98">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89054" g_stop="88979" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="516" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="88978" i_stop="88249" i_length="730">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="88248" g_stop="88016" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="749" r_length="233" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0058A04.1" gen_strand="-" ref_id="SGN-U324147" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0058A04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92753" e_stop="92654"/>
          <exon e_start="92306" e_stop="92232"/>
          <exon e_start="92101" e_stop="92010"/>
          <exon e_start="91941" e_stop="91867"/>
          <exon e_start="89250" e_stop="89153"/>
          <exon e_start="89054" e_stop="88979"/>
          <exon e_start="88248" e_stop="88016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTTAGAAAAGAAGAAAAACAAGAGTAAGAGCGCAGCTGAATATCATTTGCGGGGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTGGTAATTTTCTCTTCTTCACCTACAATCAAATCGCCGATTTTATTTTATTTTTCTAATTTTGGTTGTCGATGACAGATTAGTATGCAAAATCTAAAAAATGGAACTTGGAATGTCTTTATAAATTGAATTTAGAAAGAAAACAGAGAAAAATTTATGCATGAATTTTTAGTTTTAGAAAAGATGGTATGCTAATGTTTTACTGTTTGGTAAAATAAAGAATGAGGTGCTTTAATTTGGCCGATCCCATCTGAACTCAATACTTTCTGCTGTAATGAATTATTCGTAACTACTATAACTTAAATTCGAAGTCTACTTTTACATTTACATTTATGCTAATCATTTTTTAGGAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAAGTAAGCAGATTTCATTTTGTGCTCAATTTGCATGCGCTTATGATAAACTTTATCTTCCAAGAGCCATAAATGCACTCTGTTTACTAATATAGTTTGGCATCTCACCTTCAAAATTTTATAAACCTTGCAGAGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAATGTAAGTAATCTGTAGTTATCTTGATTTATGAAACGAACAACTAATTTCTTCTTCTTATCTTGTCCTAGATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAGGTAGGGGCATTTGTGAGGAATACATCCTTTTGTCCTGTACTCCTGTTATAATTCACTCAATGCGTAGTAATAACATTTTCTGCTGCTTGCATTAGCAATTTCCTGTATACAAGAGCAATCTCATATTTCTGTGGAGTAGTTTAATAGATCTACCAGGTTTATCTCTTCCATGTGATCGATTTAGCATGTATCATGCTTGTTGCAATAACTAATCCTTAGGCATTGCTAAAGCTATGATTGTTAAATTCGAACACAATGTCGCGGTGTGGCTTAAATGCGACTCTGAATACTAGTTGCTCTCTAGCATGAGGTTATTTTGTTGTCTTTTTAGATTGATTTTCAATTTGTCTTCAGAGCCAAAGTTTCATTTTTCCTTTCTATATAAAAAAATACTGAAGAAGGAAAATTAAGAAGTTCAAGAATAGGTCACAAAGGAGCAAACCATGATAATTGTGTCTCCTAAATGCTCCAAAATTTTACAAAAGCATCCTTTAAGGGATGATAAGAGCACAAAATTTTAACTCATTATGTCTTAAAATATACTGAATGAAAGGCTACCAAGGCAAACCTTCTACTACTCTAGGAAAAGATTGTTAATATAAAAATGTCTAGTTACTAAGAGATATATCCGGTATATATATATATTAAGTGATTCAAAGGTTTCTTTTATTAGTTTTAATAATAATTTTGTTTAATTTAATAAAAAGAAGTCTATTTTGTACTCTATCTGTGTATTCTTTTTTATTCCTAAAAAATAGCAGATGAAATAGAAGGCTTAGAGGGGAGATAATGGAATTATGTGATTGGGTCTTCCAAAAACAAAGGAATAATCCGTTTTTCCATTAACTGATTTGATGGGTCCAACAAACAATTAATTATAACAAATATCTAAATTCTACATTAAAAAAAAATACTAGACTAAGATTCTAAATAAAGGATAATAAATAAAAGGGGTCCTCTTTTATTCGAAACGGAGAGGCTCCATTACTCTTTTGTGAGGCAAAATAAACTTCTTGTTTTAGTAAAGGAAAGAGTAAAAAGGTTCAATGCTCACAATCTCCCATATGTATTGCAACAACAAACCTAGTATAATCCCATAAGTGGGGTATGGGGAAGGTGGTGTGTACTAGGCCTTATCCCTACCTTGTGAAGATAGAGTTTCCTATAGACCCTTGTCTCAAGTATAGCACATCAAAAAAGGATAGTAGCTAAGAATCTGAAGAAGCATATCAATAGCTAGAATCTAAAGAAGAGAATAGTAGCAACAACTAATATGATAATTGAATCAAAGGAAACAATAGGTAATACTAAGATCGAAGAATAAGATAGTAGGAAAGCAATAATAATAAAACTGATAACGGAACTAGACAATGTTCGACTACCAACTAACCTTTATCCTAATTGCGACCTCCATATCTCCCTATCTAGGGTCATAATCTTAGTAAGCTGCAATTGAGCCATGTCAAGTCTTATCACCTCTGCATATCTCCCATACGTATTGATATTCTGTAATTTATAAATTACATCTTCCACAGATGTTTCTGGTTCCCACAAATGCAACTTAAGATAGTTACATGTCGAACTAACAGTTTAGCTATTAATTTGTTTCCAACTTCTTCTTTACTTGATCAGTTACAAACCCCACTGAAGTGTTCTTATTGCTCCCTGTTAGTTCGACTTATTTCTTTTGAGCTAGGTAGATAATGTATCTTCCATCTGTAGTCTATGATATAGACCTTTAGGTGGCTTAATTTCCATTTCTTGTGGTCATGACAACTAGGCTTAAGTTAAATCACTTAGCTCTTTCCGAAAAAGTACCGGGAGAAAGCACCGTCAGGGGTTTGAACCCCACCATAGACCCAAAAAAAAAAGTAGGGAGGGGAATTGCCGAGGGCTTCTCTTCTATGTGGTTCTGCATGATACTTGCGTTAATGTTTCAGAAGTGTTATTTGTAGTTTTGATGATGTAACAAACTCAGGGACCTTATGAAGGTACCCTGTTCTCAATATGAATCGTTCGTTGACTGTCAGCTGGAGAAAGTACAGAAAGTTGTGTAACCGATTTCCTTTTGCTTGTGAAGATTAGTGAAACGGTTGTGAAAATCCTGTGAGACAGGTCGTGGTTTTACTCCCTTGAGCAAGGAGGTTTCCACGTAAAACTCCTCTGTTGTTAAACTGCATTTACTTTCTGCTATATCCTTATTTGTGTGTCAAGGGACCTGGTCCATTGACTAATAGTGGACGCACAGATTCTAACAAGAAGTTAACAGCTTAGAACCTTCCGCTTTAGTACAAAACTTTCTAACCCATCTCTCAAGGGCTATTAATTCTCTAGGCAATGCATTCTCAACCTTTGTGTTGTTTTATCCATCTTCTATAATCTCGCTGCTGGACCTTAATGCCTTATGTTCTTAATTTTTACTGTTTTAGAATGAAATGAAGACAGTAATGGTCTTTATAATGTGAGGGAGAGACTAGGGTGGAGGGTCTCTGACATGCAATGTCTACCTTGCTTAAGACATAAATGTTTCTTTACTCTGTATCTTTCTTTGACTGAAACTAAACAAGTTGCATCACATCAGTTTTCATCTTAGGTCTTTTTTCTCTTTTACTCCAGGGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGGGTGAGCACCTTTTGGATAGATAACACTTCTCTCATATTTCTCCTCATTCGTCTTTCCTCGAGTAACATAAGATTTTGATTTTGATCTTTTCCCTGCAGTTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTGGTGAGTTAATACTTATGCCTATCTCAAATTGGTATGGCTTCATTGGAGATGGAAGGGTATTTAAAGCTTTTGCAGCTCCTTCAAGCCATTTTTCCTTTAATTAAACTGATACATGTGGTTGAATTTTTTAACCCAAAATAAGGGAAGTTGTGTTAAATATTGTACTGAGGCATGCCTGATTTTGATTTTGGCTATGGTCATGTTTGTTTGTTCTTTTGATTGTGGTCCTTGATGGTTGTCTGAAGTTGCAATTTTGTCCTCAATACTTTGGGTTGTGCAACTCGCACTCCTATATGTTAATTTGTGCCCACGGATCCTGATTTTATCACATAAATGGCCATATTTTTTAAACTCACATATGATAATGGTTAGATGAACACTATTGTATACCAATCCATAGGGCGTCACTTTTTGGTTATGGTCAAATTTATGTCATAGTCTACTCTTTGGGAATAGAAACTTATTAAATCCGTTACGTTGGTGTTATGTAGTGCCTTGAACCTTCCAGCAAACCTCACTTTATAAGTCCAAGTCATGGATGTGCAAAATTTATATTATATCTATAAGAAGAAGCTAAGGTAGGTATTAGTGGATGTTTGATCTGGACCATGGCTAACAAGTGGCCATTATGGTGTAACTTGAAGGTTTAGATGATTGACAGCAAACAGATATAAGTTTCAGTTTTTGTATCATGCTACCTAGGTTCTAACATCTTCCCCTTTGTTTTCAGCTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAGTTCTGAAGTAGCAAATCTTGTTATCAAGTTTTCTTATACTATCCTATCCCCTGTTTTCTCTAC</genome_strand>
        <mrna_strand>TTGTGCTTAGAAAAGAAGAAAAACAAGAGTAAGAGCGCAGCTGAATATCATTTGCGGGGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTG...........................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAA..................................................................................................................................AGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAAT....................................................................ATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGG..................................................................................................TTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAGTTCTGAAGTAGCAAATCTTGTTATCAAGTTTTCATATACTATCCTATCCGCCTTTTTCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>27</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11274" PGL_stop="10288"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11274" e_stop="11106"/>
            <exon e_start="11008" e_stop="10764"/>
            <exon e_start="10697" e_stop="10559"/>
            <exon e_start="10468" e_stop="10288"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.685" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11274" e_stop="11106" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.831">
            <gDNA_intron_boundary i_start="11105" i_stop="11009" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11008" e_stop="10764" e_length="245"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.930">
            <gDNA_intron_boundary i_start="10763" i_stop="10698" i_length="66"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10697" e_stop="10559" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.685" acc_prob="0.965">
            <gDNA_intron_boundary i_start="10558" i_stop="10469" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.961">
            <gDNA_exon_boundary e_start="10468" e_stop="10288" e_length="181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11274" stop="11106"/>
              <exon start="11008" stop="10764"/>
              <exon start="10697" stop="10559"/>
              <exon start="10468" stop="10288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342195" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAAATCCAATGATAGAGAAGAAATAGCAGAAATTGAGAAGATGCATGCTCTTATGAAGGAACATAACTTGGATGGTCAATTCAGATGGATATCAGCCCAAATGAACCGGGCACGTAATGGTGAGCTCTATCGCTATATAGCTGACAAGAGAGGTATATTTGTTCAG : CCTGCGTATTATGAAGCGTTTGGACTGACGGTGGTTGAAGCTATGACTTGTGGTCTTCCAACATTTGCAACTTGTCATGGTGGACCTATGGAGATCATTCAGGACGGTGTATCCGGGTACCATATAGATCCTTATCATCCCAATAAAGCTGCTGAGCTCATGGTAGAATTCTTCCAACGATGCGAACAAAATCCTACTCACTGGGAAAATATATCTGCATCTGGCCTACAAAGGATTCTCGACAG : GTATACATGGAAAATTTACTCGGAGAGGCTGATGACTTTGGCTGGTGTATATGGTTTCTGGAAGCTTGTTTCAAAACTCGAGAGGCGTGAAACTAGACGATACCTCGAGATGTTCTACATTCTCAAGTTCCGTGAGTTG : GTAAAATCTGTTCCTCTAGCAGTTGATGAGAAGCAGTGAGGATTTTGCAAAGGAATAAATAACGTGGAGCATACCACTCTATCTATGATAATTTTTTTTTTGTTCTTCTTGTTTGTTGTGTAGTTAAACTAATTAAGTGCACTGAGTTTCTAATAGATCTCAAATAGCTAAACGTTACTAT</gDNA_template>
            <first_frame> K  E  I  Q  *  *  R  R  N  S  R  N  *  E  D  A  C  S  Y  E  G  T  *  L  G  W  S  I  Q  M  D  I  S  P  N  E  P  G  T  *  W  *  A  L  S  L  Y  S  *  Q  E  R  Y  I  C  S   : A  C  V  L  *  S  V  W  T  D  G  G  *  S  Y  D  L  W  S  S  N  I  C  N  L  S  W  W  T  Y  G  D  H  S  G  R  C  I  R  V  P  Y  R  S  L  S  S  Q  *  S  C  *  A  H  G  R  I  L  P  T  M  R  T  K  S  Y  S  L  G  K  Y  I  C  I  W  P  T  K  D  S  R  Q  :  V  Y  M  E  N  L  L  G  E  A  D  D  F  G  W  C  I  W  F  L  E  A  C  F  K  T  R  E  A  *  N  *  T  I  P  R  D  V  L  H  S  Q  V  P  *  V   : G  K  I  C  S  S  S  S  *  *  E  A  V  R  I  L  Q  R  N  K  *  R  G  A  Y  H  S  I  Y  D  N  F  F  F  V  L  L  V  C  C  V  V  K  L  I  K  C  T  E  F  L  I  D  L  K  *  L  N  V  T   </first_frame>
            <second_frame>  K  K  S  N  D  R  E  E  I  A  E  I  E  K  M  H  A  L  M  K  E  H  N  L  D  G  Q  F  R  W  I  S  A  Q  M  N  R  A  R  N  G  E  L  Y  R  Y  I  A  D  K  R  G  I  F  V  Q  :  P  A  Y  Y  E  A  F  G  L  T  V  V  E  A  M  T  C  G  L  P  T  F  A  T  C  H  G  G  P  M  E  I  I  Q  D  G  V  S  G  Y  H  I  D  P  Y  H  P  N  K  A  A  E  L  M  V  E  F  F  Q  R  C  E  Q  N  P  T  H  W  E  N  I  S  A  S  G  L  Q  R  I  L  D  R :   Y  T  W  K  I  Y  S  E  R  L  M  T  L  A  G  V  Y  G  F  W  K  L  V  S  K  L  E  R  R  E  T  R  R  Y  L  E  M  F  Y  I  L  K  F  R  E  L  :  V  K  S  V  P  L  A  V  D  E  K  Q  *  G  F  C  K  G  I  N  N  V  E  H  T  T  L  S  M  I  I  F  F  L  F  F  L  F  V  V  *  L  N  *  L  S  A  L  S  F  *  *  I  S  N  S  *  T  L  L  </second_frame>
            <third_frame>   R  N  P  M  I  E  K  K  *  Q  K  L  R  R  C  M  L  L  *  R  N  I  T  W  M  V  N  S  D  G  Y  Q  P  K  *  T  G  H  V  M  V  S  S  I  A  I  *  L  T  R  E  V  Y  L  F  S :   L  R  I  M  K  R  L  D  *  R  W  L  K  L  *  L  V  V  F  Q  H  L  Q  L  V  M  V  D  L  W  R  S  F  R  T  V  Y  P  G  T  I  *  I  L  I  I  P  I  K  L  L  S  S  W  *  N  S  S  N  D  A  N  K  I  L  L  T  G  K  I  Y  L  H  L  A  Y  K  G  F  S  T   : G  I  H  G  K  F  T  R  R  G  *  *  L  W  L  V  Y  M  V  S  G  S  L  F  Q  N  S  R  G  V  K  L  D  D  T  S  R  C  S  T  F  S  S  S  V  S  W :   *  N  L  F  L  *  Q  L  M  R  S  S  E  D  F  A  K  E  *  I  T  W  S  I  P  L  Y  L  *  *  F  F  F  C  S  S  C  L  L  C  S  *  T  N  *  V  H  *  V  S  N  R  S  Q  I  A  K  R  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11273" stop="11106"/>
                    <exon start="11008" stop="10764"/>
                    <exon start="10697" stop="10559"/>
                    <exon start="10468" stop="10430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSNDREEIAEIEKMHALMKEHNLDGQFRWISAQMNRARNGELYRYIADKRGIFVQPAYYEAFGLTVVEAMTCGLPTFATCHGGPMEIIQDGVSGYHIDPYHPNKAAELMVEFFQRCEQNPTHWENISASGLQRILDRYTWKIYSERLMTLAGVYGFWKLVSKLERRETRRYLEMFYILKFRELVKSVPLAVDEKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13726" PGL_stop="11794"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13726" e_stop="13639"/>
            <exon e_start="13555" e_stop="13382"/>
            <exon e_start="13070" e_stop="12954"/>
            <exon e_start="12855" e_stop="12689"/>
            <exon e_start="11932" e_stop="11794"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.511" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.106" e_score="1.000"/>
          <exon-intron don_prob="0.857" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.169" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13726" e_stop="13639" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.511" acc_prob="0.963">
            <gDNA_intron_boundary i_start="13638" i_stop="13556" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13555" e_stop="13382" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.868" acc_prob="0.106">
            <gDNA_intron_boundary i_start="13381" i_stop="13071" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13070" e_stop="12954" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.857" acc_prob="0.961">
            <gDNA_intron_boundary i_start="12953" i_stop="12856" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12855" e_stop="12689" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.169">
            <gDNA_intron_boundary i_start="12688" i_stop="11933" i_length="756"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="11932" e_stop="11794" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13726" stop="13639"/>
              <exon start="13555" stop="13382"/>
              <exon start="13070" stop="12954"/>
              <exon start="12855" stop="12689"/>
              <exon start="11932" stop="11794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACTGGATCAAGTGCGTGCTTTGGAGGCCGAAATGCTTCTTAGAATAAAGCAACAAGGACTCAACTTCAAGCCTAGAATCCTTGTT : GTCACCCGACTGATACCTGATGCTAAAGGAACCACGTGCAACCAGCGGTTGGAGAGAATTAGTGGAACTGAATACTCGCATATTTTACGTGTCCCTTTTAGGACAGAAAATGGAATCCTTCATAAATGGATATCTAGGTTTGATGTATGGCCTTACCTGGAGAAGTTTACTGAG : GACGTGGCAGGTGAAATGTCTGCTGAGCTCCAGGGAGTGCCTGATCTGATTATTGGCAACTACAGTGATGGAAATTTAGTTGCCTCCCTGTTAGCATATAAAATGGGCATCACACAG : TGTACCATTGCTCATGCTTTGGAGAAAACAAAGTATCCTGATTCTGACATCTATTGGAAAAAGTTTGAGGAGAAATATCATTTTTCATGTCAGTTTACTGCTGACCTACTGTCAATGAATCATTCAGATTTCATAATCACTAGTACCTATCAAGAGATTGCAGGAAC : GAAGAATACTGTTGGTCAGTACGAGAGTCATACTGCTTTCACTCTCCCAGGCCTATATCGTGTTGTCCATGGCATTGATGTCTTCGATCCCAAATTCAATATAGTGTCTCCTGGAGCTGACATGACAATTTACTTCCCA</gDNA_template>
            <first_frame> Y  T  G  S  S  A  C  F  G  G  R  N  A  S  *  N  K  A  T  R  T  Q  L  Q  A  *  N  P  C   : C  H  P  T  D  T  *  C  *  R  N  H  V  Q  P  A  V  G  E  N  *  W  N  *  I  L  A  Y  F  T  C  P  F  *  D  R  K  W  N  P  S  *  M  D  I  *  V  *  C  M  A  L  P  G  E  V  Y  *   : G  R  G  R  *  N  V  C  *  A  P  G  S  A  *  S  D  Y  W  Q  L  Q  *  W  K  F  S  C  L  P  V  S  I  *  N  G  H  H  T   : V  Y  H  C  S  C  F  G  E  N  K  V  S  *  F  *  H  L  L  E  K  V  *  G  E  I  S  F  F  M  S  V  Y  C  *  P  T  V  N  E  S  F  R  F  H  N  H  *  Y  L  S  R  D  C  R  N  :  E  E  Y  C  W  S  V  R  E  S  Y  C  F  H  S  P  R  P  I  S  C  C  P  W  H  *  C  L  R  S  Q  I  Q  Y  S  V  S  W  S  *  H  D  N  L  L  P  </first_frame>
            <second_frame>  I  L  D  Q  V  R  A  L  E  A  E  M  L  L  R  I  K  Q  Q  G  L  N  F  K  P  R  I  L  V  :  V  T  R  L  I  P  D  A  K  G  T  T  C  N  Q  R  L  E  R  I  S  G  T  E  Y  S  H  I  L  R  V  P  F  R  T  E  N  G  I  L  H  K  W  I  S  R  F  D  V  W  P  Y  L  E  K  F  T  E  :  D  V  A  G  E  M  S  A  E  L  Q  G  V  P  D  L  I  I  G  N  Y  S  D  G  N  L  V  A  S  L  L  A  Y  K  M  G  I  T  Q  :  C  T  I  A  H  A  L  E  K  T  K  Y  P  D  S  D  I  Y  W  K  K  F  E  E  K  Y  H  F  S  C  Q  F  T  A  D  L  L  S  M  N  H  S  D  F  I  I  T  S  T  Y  Q  E  I  A  G  T :   K  N  T  V  G  Q  Y  E  S  H  T  A  F  T  L  P  G  L  Y  R  V  V  H  G  I  D  V  F  D  P  K  F  N  I  V  S  P  G  A  D  M  T  I  Y  F  P </second_frame>
            <third_frame>   Y  W  I  K  C  V  L  W  R  P  K  C  F  L  E  *  S  N  K  D  S  T  S  S  L  E  S  L  L :   S  P  D  *  Y  L  M  L  K  E  P  R  A  T  S  G  W  R  E  L  V  E  L  N  T  R  I  F  Y  V  S  L  L  G  Q  K  M  E  S  F  I  N  G  Y  L  G  L  M  Y  G  L  T  W  R  S  L  L  R :   T  W  Q  V  K  C  L  L  S  S  R  E  C  L  I  *  L  L  A  T  T  V  M  E  I  *  L  P  P  C  *  H  I  K  W  A  S  H  S :   V  P  L  L  M  L  W  R  K  Q  S  I  L  I  L  T  S  I  G  K  S  L  R  R  N  I  I  F  H  V  S  L  L  L  T  Y  C  Q  *  I  I  Q  I  S  *  S  L  V  P  I  K  R  L  Q  E   : R  R  I  L  L  V  S  T  R  V  I  L  L  S  L  S  Q  A  Y  I  V  L  S  M  A  L  M  S  S  I  P  N  S  I  *  C  L  L  E  L  T  *  Q  F  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13725" stop="13639"/>
                    <exon start="13555" stop="13382"/>
                    <exon start="13070" stop="12954"/>
                    <exon start="12855" stop="12689"/>
                    <exon start="11932" stop="11794"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILDQVRALEAEMLLRIKQQGLNFKPRILVVTRLIPDAKGTTCNQRLERISGTEYSHILRVPFRTENGILHKWISRFDVWPYLEKFTEDVAGEMSAELQGVPDLIIGNYSDGNLVASLLAYKMGITQCTIAHALEKTKYPDSDIYWKKFEEKYHFSCQFTADLLSMNHSDFIITSTYQEIAGTKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMTIYFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23368" PGL_stop="17978"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23368" e_stop="23341"/>
            <exon e_start="23248" e_stop="23186"/>
            <exon e_start="22705" e_stop="22649"/>
            <exon e_start="22561" e_stop="22460"/>
            <exon e_start="22127" e_stop="21969"/>
            <exon e_start="21866" e_stop="21735"/>
            <exon e_start="21646" e_stop="21560"/>
            <exon e_start="21439" e_stop="21368"/>
            <exon e_start="20548" e_stop="20462"/>
            <exon e_start="20378" e_stop="19922"/>
            <exon e_start="19235" e_stop="19174"/>
            <exon e_start="18470" e_stop="18402"/>
            <exon e_start="18319" e_stop="17978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.324" acc_prob="0.856" e_score="0.964"/>
          <exon-intron don_prob="0.996" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.758" acc_prob="1.000" e_score="0.951"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="0.969"/>
          <exon-intron don_prob="0.997" acc_prob="0.977" e_score="0.962"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.432" e_score="0.986"/>
          <exon-intron don_prob="0.923" acc_prob="0.980" e_score="0.920"/>
          <exon-intron don_prob="0.851" acc_prob="0.782" e_score="0.950"/>
          <exon-intron don_prob="0.883" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.755" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="23368" e_stop="23341" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.324" acc_prob="0.856">
            <gDNA_intron_boundary i_start="23340" i_stop="23249" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23248" e_stop="23186" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.869">
            <gDNA_intron_boundary i_start="23185" i_stop="22706" i_length="480"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22705" e_stop="22649" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="22648" i_stop="22562" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.951">
            <gDNA_exon_boundary e_start="22561" e_stop="22460" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.758" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22459" i_stop="22128" i_length="332"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="22127" e_stop="21969" e_length="159"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21968" i_stop="21867" i_length="102"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="21866" e_stop="21735" e_length="132"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.977">
            <gDNA_intron_boundary i_start="21734" i_stop="21647" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21646" e_stop="21560" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21559" i_stop="21440" i_length="120"/>
          </intron>
          <exon e_serial="8" e_score="0.986">
            <gDNA_exon_boundary e_start="21439" e_stop="21368" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.990" acc_prob="0.432">
            <gDNA_intron_boundary i_start="21367" i_stop="20549" i_length="819"/>
          </intron>
          <exon e_serial="9" e_score="0.920">
            <gDNA_exon_boundary e_start="20548" e_stop="20462" e_length="87"/>
          </exon>
          <intron i_serial="9" don_prob="0.923" acc_prob="0.980">
            <gDNA_intron_boundary i_start="20461" i_stop="20379" i_length="83"/>
          </intron>
          <exon e_serial="10" e_score="0.950">
            <gDNA_exon_boundary e_start="20378" e_stop="19922" e_length="457"/>
          </exon>
          <intron i_serial="10" don_prob="0.851" acc_prob="0.782">
            <gDNA_intron_boundary i_start="19921" i_stop="19236" i_length="686"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="19235" e_stop="19174" e_length="62"/>
          </exon>
          <intron i_serial="11" don_prob="0.883" acc_prob="0.979">
            <gDNA_intron_boundary i_start="19173" i_stop="18471" i_length="703"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="18470" e_stop="18402" e_length="69"/>
          </exon>
          <intron i_serial="12" don_prob="0.976" acc_prob="0.755">
            <gDNA_intron_boundary i_start="18401" i_stop="18320" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="0.997">
            <gDNA_exon_boundary e_start="18319" e_stop="17978" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23368" stop="23341"/>
              <exon start="23248" stop="23186"/>
              <exon start="22705" stop="22649"/>
              <exon start="22561" stop="22460"/>
              <exon start="22127" stop="21969"/>
              <exon start="21866" stop="21735"/>
              <exon start="21646" stop="21560"/>
              <exon start="21439" stop="21368"/>
              <exon start="20548" stop="20462"/>
              <exon start="20378" stop="20042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20140" stop="19922"/>
              <exon start="19235" stop="19174"/>
              <exon start="18470" stop="18402"/>
              <exon start="18319" stop="17978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAAAGAAGTAAACCAAATTGCACAG : CTTCGAATTATTATAAAACCAAAGCCTTGTGTCGGAGTTAGGCCCCTTTGCAGTGCACAGCAG : ATATGCTATCATCTGCTTGGACTAGTACATGGAATCTGGACACCTATCCCTCGTGCT : ATGAAAGACTACATTGCCACTCCAAAGCCTAACGGCTATCAAAGTCTTCATACAACGGTGATTCCATTTCTTTATGAGAGCATGTTTCGTTTAGAGGTTCAG : ATTAGAACTGAAGAGATGGACCTCATAGCTGAGAGAGGCATTGCTGCACACTACAGTGGGAAAGGTTTTGTAAATGGTTTAGTTGGGCATGTTATAACCAATGATAAAAATTCTGGAGGGAAAATAGTCTGCCTTAACAATGCCAATATTGCTCTCAGG : ATTGGCTGGCTGAATGCAATTAGGGAGTGGCAAGAAGAGTTCGTTGGAAACATGAGTTCTAGGGAATTTGTGGACACTATTACCAGAGATCTGTTGGGCAGTCGTGTCTTTGTGTTTACACCTGGAGGAGAG : ATAAAACATCTCCCAAAGGGGGCTACTGTCATTGATTATGCGTATATGATACACACTGAAATTGGCAATAAAATGGTGGCTGCTAAG : GTGAATGGTAATCTTATCAAGCCAATGCATGTACTTGCAAACGCAGAAGTTGTAGAGATTATCACTTACAAT : GGTCTCTCTAGCAAGTCTGCTTTCGAGAGACACAAACAGTGGCTTCAACATGCGAAAACTCGTTGTGCCCGACACAAAATTATGAAA : TTTTTGAGAGAGCAAGCTGCACTATCAGCATCTGAGATAACTGTGGATTCAGTTAAGGAATTTGCAGCTGAGTCTGAAGGGGATAGCACAGTGGAAAAATTAGCAGATTACTCTGAGGGAACCAAACATTCGTGGGAGAAAATCCTCAAAAATGTTATGGATGTATTATCTGCAAGGATGAGTGGTGAAAATATTTTCCAACTCCGTAGTGGTAGTATTCAAATTCCCAAGGTAAATGGGAAACATAATAAGTGCATGCAGCATACAAATTTGAAGGCCACAGGGGAGACATTGTCACAAGGAAATGGTGTTGGCGAAATGATACTTGCTAACATACCAAGGTACAGGGATGTTCTGCCTGGATTAGACGGCTGGATGGCTAGCAAAGTTGCAACTTGGCAAAACCTGGAAGGGCACTCTGTTCAGTGGTTTTGTGTTGTCAGCATAGATCGAAAAG : GCATGATGGCCGATATTACTTCAGCATTGGCAGCTGTAGGCGTCATCATATGTTCTTGTGCG : GCTGAGACGGATAGAGGGAAGGGAATCGGTGTCGCGCTATTTCATATTGAAGCCAACCTAGAGAGCTTG : GTTGGTGCAAGTTCGAGGATTGACATGATCCTGGGTGTTTTGGGATGGTCCACGGGCTGCAGTTGGTCAGAGAACAAACAGTTTCTAGAATGCTAATTTAGTGGCCTGGTGAAGAGTAGTTGCCCAGCTGTTGAATGCTTGGGGAAGAAAGTTTTGTTCAGTGAAACCTGAGTTCTGTTTGACAAGTATAGAAGCAAGCAATATAGGTTATATGGTGTAGGGCGACTGTATATAAAGGAAGAGTAGCAACCAGTTATACTTGTAAAGGAATTTTCAACTATACGAACTCCAACAAAAGTATGTTACAGTTATACAAAATAAATATATTAAATTATTTGTCAC</gDNA_template>
            <first_frame> N  K  R  S  K  P  N  C  T   : A  S  N  Y  Y  K  T  K  A  L  C  R  S  *  A  P  L  Q  C  T  A   : D  M  L  S  S  A  W  T  S  T  W  N  L  D  T  Y  P  S  C   : Y  E  R  L  H  C  H  S  K  A  *  R  L  S  K  S  S  Y  N  G  D  S  I  S  L  *  E  H  V  S  F  R  G  S   : D  *  N  *  R  D  G  P  H  S  *  E  R  H  C  C  T  L  Q  W  E  R  F  C  K  W  F  S  W  A  C  Y  N  Q  *  *  K  F  W  R  E  N  S  L  P  *  Q  C  Q  Y  C  S  Q   : D  W  L  A  E  C  N  *  G  V  A  R  R  V  R  W  K  H  E  F  *  G  I  C  G  H  Y  Y  Q  R  S  V  G  Q  S  C  L  C  V  Y  T  W  R  R   : D  K  T  S  P  K  G  G  Y  C  H  *  L  C  V  Y  D  T  H  *  N  W  Q  *  N  G  G  C  *   : G  E  W  *  S  Y  Q  A  N  A  C  T  C  K  R  R  S  C  R  D  Y  H  L  Q   : W  S  L  *  Q  V  C  F  R  E  T  Q  T  V  A  S  T  C  E  N  S  L  C  P  T  Q  N  Y  E   : I  F  E  R  A  S  C  T  I  S  I  *  D  N  C  G  F  S  *  G  I  C  S  *  V  *  R  G  *  H  S  G  K  I  S  R  L  L  *  G  N  Q  T  F  V  G  E  N  P  Q  K  C  Y  G  C  I  I  C  K  D  E  W  *  K  Y  F  P  T  P  *  W  *  Y  S  N  S  Q  G  K  W  E  T  *  *  V  H  A  A  Y  K  F  E  G  H  R  G  D  I  V  T  R  K  W  C  W  R  N  D  T  C  *  H  T  K  V  Q  G  C  S  A  W  I  R  R  L  D  G  *  Q  S  C  N  L  A  K  P  G  R  A  L  C  S  V  V  L  C  C  Q  H  R  S  K  R :   H  D  G  R  Y  Y  F  S  I  G  S  C  R  R  H  H  M  F  L  C   : G  *  D  G  *  R  E  G  N  R  C  R  A  I  S  Y  *  S  Q  P  R  E  L   : G  W  C  K  F  E  D  *  H  D  P  G  C  F  G  M  V  H  G  L  Q  L  V  R  E  Q  T  V  S  R  M  L  I  *  W  P  G  E  E  *  L  P  S  C  *  M  L  G  E  E  S  F  V  Q  *  N  L  S  S  V  *  Q  V  *  K  Q  A  I  *  V  I  W  C  R  A  T  V  Y  K  G  R  V  A  T  S  Y  T  C  K  G  I  F  N  Y  T  N  S  N  K  S  M  L  Q  L  Y  K  I  N  I  L  N  Y  L  S  </first_frame>
            <second_frame>  I  K  E  V  N  Q  I  A  Q  :  L  R  I  I  I  K  P  K  P  C  V  G  V  R  P  L  C  S  A  Q  Q  :  I  C  Y  H  L  L  G  L  V  H  G  I  W  T  P  I  P  R  A  :  M  K  D  Y  I  A  T  P  K  P  N  G  Y  Q  S  L  H  T  T  V  I  P  F  L  Y  E  S  M  F  R  L  E  V  Q  :  I  R  T  E  E  M  D  L  I  A  E  R  G  I  A  A  H  Y  S  G  K  G  F  V  N  G  L  V  G  H  V  I  T  N  D  K  N  S  G  G  K  I  V  C  L  N  N  A  N  I  A  L  R  :  I  G  W  L  N  A  I  R  E  W  Q  E  E  F  V  G  N  M  S  S  R  E  F  V  D  T  I  T  R  D  L  L  G  S  R  V  F  V  F  T  P  G  G  E  :  I  K  H  L  P  K  G  A  T  V  I  D  Y  A  Y  M  I  H  T  E  I  G  N  K  M  V  A  A  K  :  V  N  G  N  L  I  K  P  M  H  V  L  A  N  A  E  V  V  E  I  I  T  Y  N  :  G  L  S  S  K  S  A  F  E  R  H  K  Q  W  L  Q  H  A  K  T  R  C  A  R  H  K  I  M  K  :  F  L  R  E  Q  A  A  L  S  A  S  E  I  T  V  D  S  V  K  E  F  A  A  E  S  E  G  D  S  T  V  E  K  L  A  D  Y  S  E  G  T  K  H  S  W  E  K  I  L  K  N  V  M  D  V  L  S  A  R  M  S  G  E  N  I  F  Q  L  R  S  G  S  I  Q  I  P  K  V  N  G  K  H  N  K  C  M  Q  H  T  N  L  K  A  T  G  E  T  L  S  Q  G  N  G  V  G  E  M  I  L  A  N  I  P  R  Y  R  D  V  L  P  G  L  D  G  W  M  A  S  K  V  A  T  W  Q  N  L  E  G  H  S  V  Q  W  F  C  V  V  S  I  D  R  K   : G  M  M  A  D  I  T  S  A  L  A  A  V  G  V  I  I  C  S  C  A  :  A  E  T  D  R  G  K  G  I  G  V  A  L  F  H  I  E  A  N  L  E  S  L  :  V  G  A  S  S  R  I  D  M  I  L  G  V  L  G  W  S  T  G  C  S  W  S  E  N  K  Q  F  L  E  C  *  F  S  G  L  V  K  S  S  C  P  A  V  E  C  L  G  K  K  V  L  F  S  E  T  *  V  L  F  D  K  Y  R  S  K  Q  Y  R  L  Y  G  V  G  R  L  Y  I  K  E  E  *  Q  P  V  I  L  V  K  E  F  S  T  I  R  T  P  T  K  V  C  Y  S  Y  T  K  *  I  Y  *  I  I  C  H </second_frame>
            <third_frame>   *  K  K  *  T  K  L  H  S :   F  E  L  L  *  N  Q  S  L  V  S  E  L  G  P  F  A  V  H  S  R :   Y  A  I  I  C  L  D  *  Y  M  E  S  G  H  L  S  L  V  L :   *  K  T  T  L  P  L  Q  S  L  T  A  I  K  V  F  I  Q  R  *  F  H  F  F  M  R  A  C  F  V  *  R  F  R :   L  E  L  K  R  W  T  S  *  L  R  E  A  L  L  H  T  T  V  G  K  V  L  *  M  V  *  L  G  M  L  *  P  M  I  K  I  L  E  G  K  *  S  A  L  T  M  P  I  L  L  S  G :   L  A  G  *  M  Q  L  G  S  G  K  K  S  S  L  E  T  *  V  L  G  N  L  W  T  L  L  P  E  I  C  W  A  V  V  S  L  C  L  H  L  E  E  R :   *  N  I  S  Q  R  G  L  L  S  L  I  M  R  I  *  Y  T  L  K  L  A  I  K  W  W  L  L  R :   *  M  V  I  L  S  S  Q  C  M  Y  L  Q  T  Q  K  L  *  R  L  S  L  T  M :   V  S  L  A  S  L  L  S  R  D  T  N  S  G  F  N  M  R  K  L  V  V  P  D  T  K  L  *  N :   F  *  E  S  K  L  H  Y  Q  H  L  R  *  L  W  I  Q  L  R  N  L  Q  L  S  L  K  G  I  A  Q  W  K  N  *  Q  I  T  L  R  E  P  N  I  R  G  R  K  S  S  K  M  L  W  M  Y  Y  L  Q  G  *  V  V  K  I  F  S  N  S  V  V  V  V  F  K  F  P  R  *  M  G  N  I  I  S  A  C  S  I  Q  I  *  R  P  Q  G  R  H  C  H  K  E  M  V  L  A  K  *  Y  L  L  T  Y  Q  G  T  G  M  F  C  L  D  *  T  A  G  W  L  A  K  L  Q  L  G  K  T  W  K  G  T  L  F  S  G  F  V  L  S  A  *  I  E  K  :  A  *  W  P  I  L  L  Q  H  W  Q  L  *  A  S  S  Y  V  L  V  R :   L  R  R  I  E  G  R  E  S  V  S  R  Y  F  I  L  K  P  T  *  R  A  W :   L  V  Q  V  R  G  L  T  *  S  W  V  F  W  D  G  P  R  A  A  V  G  Q  R  T  N  S  F  *  N  A  N  L  V  A  W  *  R  V  V  A  Q  L  L  N  A  W  G  R  K  F  C  S  V  K  P  E  F  C  L  T  S  I  E  A  S  N  I  G  Y  M  V  *  G  D  C  I  *  R  K  S  S  N  Q  L  Y  L  *  R  N  F  Q  L  Y  E  L  Q  Q  K  Y  V  T  V  I  Q  N  K  Y  I  K  L  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23367" stop="23341"/>
                    <exon start="23248" stop="23186"/>
                    <exon start="22705" stop="22649"/>
                    <exon start="22561" stop="22460"/>
                    <exon start="22127" stop="21969"/>
                    <exon start="21866" stop="21735"/>
                    <exon start="21646" stop="21560"/>
                    <exon start="21439" stop="21368"/>
                    <exon start="20548" stop="20462"/>
                    <exon start="20378" stop="19922"/>
                    <exon start="19235" stop="19174"/>
                    <exon start="18470" stop="18402"/>
                    <exon start="18319" stop="18224"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1467</number_coding_nucleotides>
                  <number_encoded_amino_acids>489</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKEVNQIAQLRIIIKPKPCVGVRPLCSAQQICYHLLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGKGFVNGLVGHVITNDKNSGGKIVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPGGEIKHLPKGATVIDYAYMIHTEIGNKMVAAKVNGNLIKPMHVLANAEVVEIITYNGLSSKSAFERHKQWLQHAKTRCARHKIMKFLREQAALSASEITVDSVKEFAAESEGDSTVEKLADYSEGTKHSWEKILKNVMDVLSARMSGENIFQLRSGSIQIPKVNGKHNKCMQHTNLKATGETLSQGNGVGEMILANIPRYRDVLPGLDGWMASKVATWQNLEGHSVQWFCVVSIDRKGMMADITSALAAVGVIICSCAAETDRGKGIGVALFHIEANLESLVGASSRIDMILGVLGWSTGCSWSENKQFLEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18645" e_stop="18469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="18645" e_stop="18469" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18645" stop="18469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTATCTATTACATTGCATTCTTCTTTTGAGATATTACCTTTTGAGTATTCATTCTGAAAAATGCACAAAGATCTAAGCAATTAAATAGTCATATTCTCCTCCTGTTTCAATTATGTTAGAATTCTCAATTGTGAGGTGACTGCATTGTTACTTGAAAAAAAAAAAAACTGCAGGC</gDNA_template>
            <first_frame> F  Y  L  L  H  C  I  L  L  L  R  Y  Y  L  L  S  I  H  S  E  K  C  T  K  I  *  A  I  K  *  S  Y  S  P  P  V  S  I  M  L  E  F  S  I  V  R  *  L  H  C  Y  L  K  K  K  K  T  A  G </first_frame>
            <second_frame>  S  I  Y  Y  I  A  F  F  F  *  D  I  T  F  *  V  F  I  L  K  N  A  Q  R  S  K  Q  L  N  S  H  I  L  L  L  F  Q  L  C  *  N  S  Q  L  *  G  D  C  I  V  T  *  K  K  K  K  L  Q   </second_frame>
            <third_frame>   L  S  I  T  L  H  S  S  F  E  I  L  P  F  E  Y  S  F  *  K  M  H  K  D  L  S  N  *  I  V  I  F  S  S  C  F  N  Y  V  R  I  L  N  C  E  V  T  A  L  L  L  E  K  K  K  N  C  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0058A04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26427" PGL_stop="25546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26427" e_stop="26396"/>
            <exon e_start="26321" e_stop="26244"/>
            <exon e_start="26163" e_stop="26092"/>
            <exon e_start="25608" e_stop="25546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26427" e_stop="26396" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="26395" i_stop="26322" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26321" e_stop="26244" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.927">
            <gDNA_intron_boundary i_start="26243" i_stop="26164" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26163" e_stop="26092" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.957">
            <gDNA_intron_boundary i_start="26091" i_stop="25609" i_length="483"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25608" e_stop="25546" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26427" stop="26396"/>
              <exon start="26321" stop="26244"/>
              <exon start="26163" stop="26092"/>
              <exon start="25608" stop="25546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343694" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGCAAATGTTTCTTTCCATGACAGAGGAG : GTCCGTGTTATAATTGTCAAATTAGCTGATAGATTACATAACATGCGCACTCTTTCACATATGCCTCCACACAAGCAG : TCTGGAATAGCAACAGAGACGCTGCAGGTTTTTGCTCCTTTGGCAAAACTTCTCGGAATATACCAAATCAAG : TCAGAGCTTGAAAACTTGGCATTTATGTATACAAATGCTCAAGACTATGCCAGGGTGCAGCGC</gDNA_template>
            <first_frame> L  G  K  C  F  F  P  *  Q  R  R :   S  V  L  *  L  S  N  *  L  I  D  Y  I  T  C  A  L  F  H  I  C  L  H  T  S  S :   L  E  *  Q  Q  R  R  C  R  F  L  L  L  W  Q  N  F  S  E  Y  T  K  S  S :   Q  S  L  K  T  W  H  L  C  I  Q  M  L  K  T  M  P  G  C  S   </first_frame>
            <second_frame>  *  A  N  V  S  F  H  D  R  G   : G  P  C  Y  N  C  Q  I  S  *  *  I  T  *  H  A  H  S  F  T  Y  A  S  T  Q  A   : V  W  N  S  N  R  D  A  A  G  F  C  S  F  G  K  T  S  R  N  I  P  N  Q   : V  R  A  *  K  L  G  I  Y  V  Y  K  C  S  R  L  C  Q  G  A  A  </second_frame>
            <third_frame>   R  Q  M  F  L  S  M  T  E  E  :  V  R  V  I  I  V  K  L  A  D  R  L  H  N  M  R  T  L  S  H  M  P  P  H  K  Q  :  S  G  I  A  T  E  T  L  Q  V  F  A  P  L  A  K  L  L  G  I  Y  Q  I  K  :  S  E  L  E  N  L  A  F  M  Y  T  N  A  Q  D  Y  A  R  V  Q  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26425" stop="26396"/>
                    <exon start="26321" stop="26244"/>
                    <exon start="26163" stop="26092"/>
                    <exon start="25608" stop="25546"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQMFLSMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSGIATETLQVFAPLAKLLGIYQIKSELENLAFMYTNAQDYARVQR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="30481" PGL_stop="26688"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30481" e_stop="30213"/>
            <exon e_start="29520" e_stop="29327"/>
            <exon e_start="27791" e_stop="27627"/>
            <exon e_start="27166" e_stop="27101"/>
            <exon e_start="26923" e_stop="26831"/>
            <exon e_start="26751" e_stop="26688"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.929" acc_prob="0.726" e_score="0.829"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.954"/>
          <exon-intron don_prob="0.848" acc_prob="0.698" e_score="0.921"/>
          <exon-intron don_prob="0.833" acc_prob="0.997" e_score="0.970"/>
          <exon-intron don_prob="0.612" acc_prob="0.513" e_score="0.957"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.829">
            <gDNA_exon_boundary e_start="30481" e_stop="30213" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.929" acc_prob="0.726">
            <gDNA_intron_boundary i_start="30212" i_stop="29521" i_length="692"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="29520" e_stop="29327" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="29326" i_stop="27792" i_length="1535"/>
          </intron>
          <exon e_serial="3" e_score="0.921">
            <gDNA_exon_boundary e_start="27791" e_stop="27627" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.848" acc_prob="0.698">
            <gDNA_intron_boundary i_start="27626" i_stop="27167" i_length="460"/>
          </intron>
          <exon e_serial="4" e_score="0.970">
            <gDNA_exon_boundary e_start="27166" e_stop="27101" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.833" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27100" i_stop="26924" i_length="177"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="26923" e_stop="26831" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.612" acc_prob="0.513">
            <gDNA_intron_boundary i_start="26830" i_stop="26752" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="26751" e_stop="26688" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30481" stop="30213"/>
              <exon start="29520" stop="29327"/>
              <exon start="27791" stop="27627"/>
              <exon start="27166" stop="27101"/>
              <exon start="26923" stop="26831"/>
              <exon start="26751" stop="26688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339848" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATTTCTCTGAATTCCACAATGTTTGCCTGACTGCAATCGCAGCAAGCAGCTCTGAATGCGAATCATCTTTTGATTACCTTTCACTCGCTGTGATTTTACTCTCCGGCCGAATATGTTTATGTATCTGCTGCATCTTTGTGTTTCCAAACGAGCCAGTTTTTGTTCCGGTTGGCTTGAATTTCCTTAAGTGCCTGCGTTTCAATTCTTCTTCTCTACTGTGTACCGATGCTTTTGAATAGACATGGCTTTTGCTACTTCAATGTCAG : TTTCTATCGAATGTATGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGTGTTATCTTGTGCCTGGAAGGCGCCAAGGGCCTTGACTGGGTTCCTTGCCAGCACAACTCATCCTTCTCAGTGTTCCTCTACTCCTTTTGAGCGATATGGAAGAACAGATCGTCTCCGCCGATGT : AGATGTTATACTTCTGATATGGATGAACGCTACCCTGTTGAAGTTCTGCGAGGAGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAACTGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTCATTTGAAGAGATATCTCCTGAAAGTTTGTGGGAG : GATCTTAAACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTAATAAGGCTTTGAAT : CTTGCTTTTGAGGCACATGATGGTCAAAAGCGTCGTAGTGGAGAGCCCTTCATTATTCACCCAATTGCAGTTGCACAGATCCTTGGACAGCTT : GAATTGGATTGGGAGTCGGTTGCTGCTGGGCTATTACATGATACTGTAGAAGACACAGATGTAG</gDNA_template>
            <first_frame> L  I  S  L  N  S  T  M  F  A  *  L  Q  S  Q  Q  A  A  L  N  A  N  H  L  L  I  T  F  H  S  L  *  F  Y  S  P  A  E  Y  V  Y  V  S  A  A  S  L  C  F  Q  T  S  Q  F  L  F  R  L  A  *  I  S  L  S  A  C  V  S  I  L  L  L  Y  C  V  P  M  L  L  N  R  H  G  F  C  Y  F  N  V  S :   F  Y  R  M  Y  E  Y  M  *  V  L  E  R  R  C  E  W  K  T  R  L  *  C  V  I  L  C  L  E  G  A  K  G  L  D  W  V  P  C  Q  H  N  S  S  F  S  V  F  L  Y  S  F  *  A  I  W  K  N  R  S  S  P  P  M   : *  M  L  Y  F  *  Y  G  *  T  L  P  C  *  S  S  A  R  S  P  W  L  N  A  S  T  I  C  F  *  Q  L  E  I  V  L  L  F  I  I  F  F  R  V  I  *  R  D  I  S  *  K  F  V  G   : G  S  *  T  Y  Y  F  I  S  F  L  Q  G  I  G  I  G  *  *  G  F  E   : S  C  F  *  G  T  *  W  S  K  A  S  *  W  R  A  L  H  Y  S  P  N  C  S  C  T  D  P  W  T  A   : *  I  G  L  G  V  G  C  C  W  A  I  T  *  Y  C  R  R  H  R  C   </first_frame>
            <second_frame>  *  F  L  *  I  P  Q  C  L  P  D  C  N  R  S  K  Q  L  *  M  R  I  I  F  *  L  P  F  T  R  C  D  F  T  L  R  P  N  M  F  M  Y  L  L  H  L  C  V  S  K  R  A  S  F  C  S  G  W  L  E  F  P  *  V  P  A  F  Q  F  F  F  S  T  V  Y  R  C  F  *  I  D  M  A  F  A  T  S  M  S   : V  S  I  E  C  M  N  I  C  K  S  W  K  G  D  V  S  G  R  L  D  C  S  V  L  S  C  A  W  K  A  P  R  A  L  T  G  F  L  A  S  T  T  H  P  S  Q  C  S  S  T  P  F  E  R  Y  G  R  T  D  R  L  R  R  C  :  R  C  Y  T  S  D  M  D  E  R  Y  P  V  E  V  L  R  G  V  P  G  S  M  L  L  L  S  A  S  S  N  W  K  L  C  C  S  S  S  F  S  S  E  S  F  E  E  I  S  P  E  S  L  W  E  :  D  L  K  P  T  I  S  Y  L  S  C  K  E  L  E  L  V  N  K  A  L  N  :  L  A  F  E  A  H  D  G  Q  K  R  R  S  G  E  P  F  I  I  H  P  I  A  V  A  Q  I  L  G  Q  L  :  E  L  D  W  E  S  V  A  A  G  L  L  H  D  T  V  E  D  T  D  V  </second_frame>
            <third_frame>   D  F  S  E  F  H  N  V  C  L  T  A  I  A  A  S  S  S  E  C  E  S  S  F  D  Y  L  S  L  A  V  I  L  L  S  G  R  I  C  L  C  I  C  C  I  F  V  F  P  N  E  P  V  F  V  P  V  G  L  N  F  L  K  C  L  R  F  N  S  S  S  L  L  C  T  D  A  F  E  *  T  W  L  L  L  L  Q  C  Q  :  F  L  S  N  V  *  I  Y  V  S  L  G  K  E  M  *  V  E  D  S  T  V  V  C  Y  L  V  P  G  R  R  Q  G  P  *  L  G  S  L  P  A  Q  L  I  L  L  S  V  P  L  L  L  L  S  D  M  E  E  Q  I  V  S  A  D  V :   D  V  I  L  L  I  W  M  N  A  T  L  L  K  F  C  E  E  S  L  A  Q  C  F  Y  Y  L  L  L  A  T  G  N  C  V  A  L  H  H  F  L  Q  S  H  L  K  R  Y  L  L  K  V  C  G  R :   I  L  N  L  L  F  H  I  F  L  A  R  N  W  N  W  L  I  R  L  *  I :   L  L  L  R  H  M  M  V  K  S  V  V  V  E  S  P  S  L  F  T  Q  L  Q  L  H  R  S  L  D  S  L :   N  W  I  G  S  R  L  L  L  G  Y  Y  M  I  L  *  K  T  Q  M  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30243" stop="30213"/>
                    <exon start="29520" stop="29327"/>
                    <exon start="27791" stop="27627"/>
                    <exon start="27166" stop="27101"/>
                    <exon start="26923" stop="26831"/>
                    <exon start="26751" stop="26689"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDMAFATSMSVSIECMNICKSWKGDVSGRLDCSVLSCAWKAPRALTGFLASTTHPSQCSSTPFERYGRTDRLRRCRCYTSDMDERYPVEVLRGVPGSMLLLSASSNWKLCCSSSFSSESFEEISPESLWEDLKPTISYLSCKELELVNKALNLAFEAHDGQKRRSGEPFIIHPIAVAQILGQLELDWESVAAGLLHDTVEDTDV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30479" stop="30240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFSEFHNVCLTAIAASSSECESSFDYLSLAVILLSGRICLCICCIFVFPNEPVFVPVGLNFLKCLRFNSSSLLCTDAFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30481" e_stop="30213"/>
            <exon e_start="29520" e_stop="29327"/>
            <exon e_start="27791" e_stop="27627"/>
            <exon e_start="27166" e_stop="27101"/>
            <exon e_start="26935" e_stop="26831"/>
            <exon e_start="26751" e_stop="26743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.929" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="0.698" e_score="1.000"/>
          <exon-intron don_prob="0.833" acc_prob="0.000" e_score="0.985"/>
          <exon-intron don_prob="0.612" acc_prob="0.513" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30481" e_stop="30213" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.929" acc_prob="0.726">
            <gDNA_intron_boundary i_start="30212" i_stop="29521" i_length="692"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29520" e_stop="29327" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="29326" i_stop="27792" i_length="1535"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27791" e_stop="27627" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.848" acc_prob="0.698">
            <gDNA_intron_boundary i_start="27626" i_stop="27167" i_length="460"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="27166" e_stop="27101" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.833" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27100" i_stop="26936" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="26935" e_stop="26831" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.612" acc_prob="0.513">
            <gDNA_intron_boundary i_start="26830" i_stop="26752" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26751" e_stop="26743" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30481" stop="30213"/>
              <exon start="29520" stop="29327"/>
              <exon start="27791" stop="27627"/>
              <exon start="27166" stop="27101"/>
              <exon start="26935" stop="26831"/>
              <exon start="26751" stop="26743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATTTCTCTGAATTCCACAATGTTTGCCTGACTGCAATCGCAGCAAGCAGCTCTGAATGCGAATCATCTTTTGATTACCTTTCACTCGCTGTGATTTTACTCTCCGGCCGAATATGTTTATGTATCTGCTGCATCTTTGTGTTTCCAAACGAGCCAGTTTTTGTTCCGGTTGGCTTGAATTTCCTTAAGTGCCTGCGTTTCAATTCTTCTTCTCTACTGTGTACCGATGCTTTTGAATAGACATGGCTTTTGCTACTTCAATGTCAG : TTTCTATCGAATGTATGAATATATGTAAGTCTTGGAAAGGAGATGTGAGTGGAAGACTCGACTGTAGTGTGTTATCTTGTGCCTGGAAGGCGCCAAGGGCCTTGACTGGGTTCCTTGCCAGCACAACTCATCCTTCTCAGTGTTCCTCTACTCCTTTTGAGCGATATGGAAGAACAGATCGTCTCCGCCGATGT : AGATGTTATACTTCTGATATGGATGAACGCTACCCTGTTGAAGTTCTGCGAGGAGTCCCTGGCTCAATGCTTCTACTATCTGCTTCTAGCAACTGGAAATTGTGTTGCTCTTCATCATTTTCTTCAGAGTCATTTGAAGAGATATCTCCTGAAAGTTTGTGGGAG : GATCTTAAACCTACTATTTCATATCTTTCTTGCAAGGAATTGGAATTGGTTAATAAGGCTTTGAAT : TCATTATTACAGCTTGCTTTTGAGGCACATGATGGTCAAAAGCGTCGTAGTGGAGAGCCCTTCATTATTCACCCAATTGCAGTTGCACAGATCCTTGGACAGCTT : GAATTGGAT</gDNA_template>
            <first_frame> L  I  S  L  N  S  T  M  F  A  *  L  Q  S  Q  Q  A  A  L  N  A  N  H  L  L  I  T  F  H  S  L  *  F  Y  S  P  A  E  Y  V  Y  V  S  A  A  S  L  C  F  Q  T  S  Q  F  L  F  R  L  A  *  I  S  L  S  A  C  V  S  I  L  L  L  Y  C  V  P  M  L  L  N  R  H  G  F  C  Y  F  N  V  S :   F  Y  R  M  Y  E  Y  M  *  V  L  E  R  R  C  E  W  K  T  R  L  *  C  V  I  L  C  L  E  G  A  K  G  L  D  W  V  P  C  Q  H  N  S  S  F  S  V  F  L  Y  S  F  *  A  I  W  K  N  R  S  S  P  P  M   : *  M  L  Y  F  *  Y  G  *  T  L  P  C  *  S  S  A  R  S  P  W  L  N  A  S  T  I  C  F  *  Q  L  E  I  V  L  L  F  I  I  F  F  R  V  I  *  R  D  I  S  *  K  F  V  G   : G  S  *  T  Y  Y  F  I  S  F  L  Q  G  I  G  I  G  *  *  G  F  E   : F  I  I  T  A  C  F  *  G  T  *  W  S  K  A  S  *  W  R  A  L  H  Y  S  P  N  C  S  C  T  D  P  W  T  A   : *  I  G  </first_frame>
            <second_frame>  *  F  L  *  I  P  Q  C  L  P  D  C  N  R  S  K  Q  L  *  M  R  I  I  F  *  L  P  F  T  R  C  D  F  T  L  R  P  N  M  F  M  Y  L  L  H  L  C  V  S  K  R  A  S  F  C  S  G  W  L  E  F  P  *  V  P  A  F  Q  F  F  F  S  T  V  Y  R  C  F  *  I  D  M  A  F  A  T  S  M  S   : V  S  I  E  C  M  N  I  C  K  S  W  K  G  D  V  S  G  R  L  D  C  S  V  L  S  C  A  W  K  A  P  R  A  L  T  G  F  L  A  S  T  T  H  P  S  Q  C  S  S  T  P  F  E  R  Y  G  R  T  D  R  L  R  R  C  :  R  C  Y  T  S  D  M  D  E  R  Y  P  V  E  V  L  R  G  V  P  G  S  M  L  L  L  S  A  S  S  N  W  K  L  C  C  S  S  S  F  S  S  E  S  F  E  E  I  S  P  E  S  L  W  E  :  D  L  K  P  T  I  S  Y  L  S  C  K  E  L  E  L  V  N  K  A  L  N  :  S  L  L  Q  L  A  F  E  A  H  D  G  Q  K  R  R  S  G  E  P  F  I  I  H  P  I  A  V  A  Q  I  L  G  Q  L  :  E  L  D </second_frame>
            <third_frame>   D  F  S  E  F  H  N  V  C  L  T  A  I  A  A  S  S  S  E  C  E  S  S  F  D  Y  L  S  L  A  V  I  L  L  S  G  R  I  C  L  C  I  C  C  I  F  V  F  P  N  E  P  V  F  V  P  V  G  L  N  F  L  K  C  L  R  F  N  S  S  S  L  L  C  T  D  A  F  E  *  T  W  L  L  L  L  Q  C  Q  :  F  L  S  N  V  *  I  Y  V  S  L  G  K  E  M  *  V  E  D  S  T  V  V  C  Y  L  V  P  G  R  R  Q  G  P  *  L  G  S  L  P  A  Q  L  I  L  L  S  V  P  L  L  L  L  S  D  M  E  E  Q  I  V  S  A  D  V :   D  V  I  L  L  I  W  M  N  A  T  L  L  K  F  C  E  E  S  L  A  Q  C  F  Y  Y  L  L  L  A  T  G  N  C  V  A  L  H  H  F  L  Q  S  H  L  K  R  Y  L  L  K  V  C  G  R :   I  L  N  L  L  F  H  I  F  L  A  R  N  W  N  W  L  I  R  L  *  I :   H  Y  Y  S  L  L  L  R  H  M  M  V  K  S  V  V  V  E  S  P  S  L  F  T  Q  L  Q  L  H  R  S  L  D  S  L :   N  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30243" stop="30213"/>
                    <exon start="29520" stop="29327"/>
                    <exon start="27791" stop="27627"/>
                    <exon start="27166" stop="27101"/>
                    <exon start="26935" stop="26831"/>
                    <exon start="26751" stop="26743"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDMAFATSMSVSIECMNICKSWKGDVSGRLDCSVLSCAWKAPRALTGFLASTTHPSQCSSTPFERYGRTDRLRRCRCYTSDMDERYPVEVLRGVPGSMLLLSASSNWKLCCSSSFSSESFEEISPESLWEDLKPTISYLSCKELELVNKALNSLLQLAFEAHDGQKRRSGEPFIIHPIAVAQILGQLELD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30479" stop="30240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DFSEFHNVCLTAIAASSSECESSFDYLSLAVILLSGRICLCICCIFVFPNEPVFVPVGLNFLKCLRFNSSSLLCTDAFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="41890" PGL_stop="40657"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41890" e_stop="41293"/>
            <exon e_start="40841" e_stop="40657"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41890" e_stop="41293" e_length="598"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.995">
            <gDNA_intron_boundary i_start="41292" i_stop="40842" i_length="451"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="40841" e_stop="40657" e_length="185"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41890" stop="41293"/>
              <exon start="40841" stop="40657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACCATCATGGCAGACGATTTCGGTTCTCATGCTTCTTCTGAGTTCTCCAACACCAGAGTCTCTGAAAATTCTAAGAAGCTTAATGTGTGTGCCTCTGAAACTCAAGAATCCAATACCCATGATGAATCCATCAAGAAAAATGATGAAGAGAAGAAAGATGATGGGTCTGTGAGGTGTTCACTCAAGATTGAAGTAATTGATGATACAGCAATGATTGATATTTCTCAAGTTGGAAAAAGTTGCTCAATTGATAAAAATTTTGATGGAAAATCTGGAAGAAATAGGAAGAAAAAGAATGCAAATCAAATGGTTACGGTTAAAGCAAAAGATAGGAAAATCGAAGAAAAGAATGTGAATGGCGGCTGTAAAATAAATGGAGGAGAAGAGAAGAGGGTTTACTGTAGAAAGGAGTTGGAAAATTTGAGGTTTGTTGGAATGGAACAACAGAGGAAAATGTGGGTTGAGCTGTACTGTGGGCTTGGTGATACCGTGCAAAAGGAGTATGATGGCCTCGTTGACTCTAATACGCAAAAGCACATCCGCCTGTCTCGAAGTCGCAGGCACATTGGTAAAGAAAATACCCCCGTCATTTCTG : GTGTTTTGGCAGCAAAAGAACGAGGAAAACATATGAAAGTTTATACACAAAGAGGCATGACATATATGAATCTGCAGAACACTTTATGTTTACCTGGCCATTAGGTCTTTAGTATTGTCCCCAGTTCGTGATAAAGGGTTGAAGGAGGAAGCATTTCTAATCATTGTCCAATACCTCTGCTGTAC</gDNA_template>
            <first_frame> I  T  I  M  A  D  D  F  G  S  H  A  S  S  E  F  S  N  T  R  V  S  E  N  S  K  K  L  N  V  C  A  S  E  T  Q  E  S  N  T  H  D  E  S  I  K  K  N  D  E  E  K  K  D  D  G  S  V  R  C  S  L  K  I  E  V  I  D  D  T  A  M  I  D  I  S  Q  V  G  K  S  C  S  I  D  K  N  F  D  G  K  S  G  R  N  R  K  K  K  N  A  N  Q  M  V  T  V  K  A  K  D  R  K  I  E  E  K  N  V  N  G  G  C  K  I  N  G  G  E  E  K  R  V  Y  C  R  K  E  L  E  N  L  R  F  V  G  M  E  Q  Q  R  K  M  W  V  E  L  Y  C  G  L  G  D  T  V  Q  K  E  Y  D  G  L  V  D  S  N  T  Q  K  H  I  R  L  S  R  S  R  R  H  I  G  K  E  N  T  P  V  I  S   : G  V  L  A  A  K  E  R  G  K  H  M  K  V  Y  T  Q  R  G  M  T  Y  M  N  L  Q  N  T  L  C  L  P  G  H  *  V  F  S  I  V  P  S  S  *  *  R  V  E  G  G  S  I  S  N  H  C  P  I  P  L  L  Y </first_frame>
            <second_frame>  L  P  S  W  Q  T  I  S  V  L  M  L  L  L  S  S  P  T  P  E  S  L  K  I  L  R  S  L  M  C  V  P  L  K  L  K  N  P  I  P  M  M  N  P  S  R  K  M  M  K  R  R  K  M  M  G  L  *  G  V  H  S  R  L  K  *  L  M  I  Q  Q  *  L  I  F  L  K  L  E  K  V  A  Q  L  I  K  I  L  M  E  N  L  E  E  I  G  R  K  R  M  Q  I  K  W  L  R  L  K  Q  K  I  G  K  S  K  K  R  M  *  M  A  A  V  K  *  M  E  E  K  R  R  G  F  T  V  E  R  S  W  K  I  *  G  L  L  E  W  N  N  R  G  K  C  G  L  S  C  T  V  G  L  V  I  P  C  K  R  S  M  M  A  S  L  T  L  I  R  K  S  T  S  A  C  L  E  V  A  G  T  L  V  K  K  I  P  P  S  F  L  :  V  F  W  Q  Q  K  N  E  E  N  I  *  K  F  I  H  K  E  A  *  H  I  *  I  C  R  T  L  Y  V  Y  L  A  I  R  S  L  V  L  S  P  V  R  D  K  G  L  K  E  E  A  F  L  I  I  V  Q  Y  L  C  C   </second_frame>
            <third_frame>   Y  H  H  G  R  R  F  R  F  S  C  F  F  *  V  L  Q  H  Q  S  L  *  K  F  *  E  A  *  C  V  C  L  *  N  S  R  I  Q  Y  P  *  *  I  H  Q  E  K  *  *  R  E  E  R  *  W  V  C  E  V  F  T  Q  D  *  S  N  *  *  Y  S  N  D  *  Y  F  S  S  W  K  K  L  L  N  *  *  K  F  *  W  K  I  W  K  K  *  E  E  K  E  C  K  S  N  G  Y  G  *  S  K  R  *  E  N  R  R  K  E  C  E  W  R  L  *  N  K  W  R  R  R  E  E  G  L  L  *  K  G  V  G  K  F  E  V  C  W  N  G  T  T  E  E  N  V  G  *  A  V  L  W  A  W  *  Y  R  A  K  G  V  *  W  P  R  *  L  *  Y  A  K  A  H  P  P  V  S  K  S  Q  A  H  W  *  R  K  Y  P  R  H  F  W :   C  F  G  S  K  R  T  R  K  T  Y  E  S  L  Y  T  K  R  H  D  I  Y  E  S  A  E  H  F  M  F  T  W  P  L  G  L  *  Y  C  P  Q  F  V  I  K  G  *  R  R  K  H  F  *  S  L  S  N  T  S  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41890" stop="41293"/>
                    <exon start="40841" stop="40738"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITIMADDFGSHASSEFSNTRVSENSKKLNVCASETQESNTHDESIKKNDEEKKDDGSVRCSLKIEVIDDTAMIDISQVGKSCSIDKNFDGKSGRNRKKKNANQMVTVKAKDRKIEEKNVNGGCKINGGEEKRVYCRKELENLRFVGMEQQRKMWVELYCGLGDTVQKEYDGLVDSNTQKHIRLSRSRRHIGKENTPVISGVLAAKERGKHMKVYTQRGMTYMNLQNTLCLPGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44005" PGL_stop="43212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44005" e_stop="43772"/>
            <exon e_start="43564" e_stop="43212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.780" acc_prob="0.668" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44005" e_stop="43772" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.780" acc_prob="0.668">
            <gDNA_intron_boundary i_start="43771" i_stop="43565" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43564" e_stop="43212" e_length="353"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44005" stop="43772"/>
              <exon start="43564" stop="43212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335681" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATTTGGGTTTACACAATAGGCAAGCACTGATAATCGTTCTTCGTAACAAAGTGGATGTTACATCATTGCATGGTCTAAACAATCCGGCTGAGAGTAACCATACAACAATTGGAGGCGATGCAGGATATTTTGCTACGATCAGAAAACTCTTTTCGTATGTAAATCCTTTATCTTACCTTGGTGGAAGTTCTAACACATCAAACACTGCTCGAGATAGCATATGGCAATATG : GGGTTGGCTATATGAAGCATTGCTGGCTATTTTTCTCCATTTTGAATTCATCTAAGGACAAACTTATGCAAAGTGAATTGAAAGCACTAGAAGTTCTTTTCATTTTCTCTAGCGTTATTTGAAGACACCTTTTCCCTGATTTAGTGCCTGACTTTGGACTGTCAGTGTAATTGCTTCTCCATGTGCTAATATCGTACTTCACACTAGCTTTTACAGATTAAATAAAGCAATGAGTTTGTAACTGAGCTTTTCAAGATCCATTATCAGGTGTATGGAACTGAGTGTTGTTAAAAATGTTCTATTTATAAATGGATGAGATAAGGGCATAACTCATTGACAGTGAGGTTCAGAAA</gDNA_template>
            <first_frame> Q  I  W  V  Y  T  I  G  K  H  *  *  S  F  F  V  T  K  W  M  L  H  H  C  M  V  *  T  I  R  L  R  V  T  I  Q  Q  L  E  A  M  Q  D  I  L  L  R  S  E  N  S  F  R  M  *  I  L  Y  L  T  L  V  E  V  L  T  H  Q  T  L  L  E  I  A  Y  G  N  M  :  G  L  A  I  *  S  I  A  G  Y  F  S  P  F  *  I  H  L  R  T  N  L  C  K  V  N  *  K  H  *  K  F  F  S  F  S  L  A  L  F  E  D  T  F  S  L  I  *  C  L  T  L  D  C  Q  C  N  C  F  S  M  C  *  Y  R  T  S  H  *  L  L  Q  I  K  *  S  N  E  F  V  T  E  L  F  K  I  H  Y  Q  V  Y  G  T  E  C  C  *  K  C  S  I  Y  K  W  M  R  *  G  H  N  S  L  T  V  R  F  R   </first_frame>
            <second_frame>  R  F  G  F  T  Q  *  A  S  T  D  N  R  S  S  *  Q  S  G  C  Y  I  I  A  W  S  K  Q  S  G  *  E  *  P  Y  N  N  W  R  R  C  R  I  F  C  Y  D  Q  K  T  L  F  V  C  K  S  F  I  L  P  W  W  K  F  *  H  I  K  H  C  S  R  *  H  M  A  I  W :   G  W  L  Y  E  A  L  L  A  I  F  L  H  F  E  F  I  *  G  Q  T  Y  A  K  *  I  E  S  T  R  S  S  F  H  F  L  *  R  Y  L  K  T  P  F  P  *  F  S  A  *  L  W  T  V  S  V  I  A  S  P  C  A  N  I  V  L  H  T  S  F  Y  R  L  N  K  A  M  S  L  *  L  S  F  S  R  S  I  I  R  C  M  E  L  S  V  V  K  N  V  L  F  I  N  G  *  D  K  G  I  T  H  *  Q  *  G  S  E  </second_frame>
            <third_frame>   D  L  G  L  H  N  R  Q  A  L  I  I  V  L  R  N  K  V  D  V  T  S  L  H  G  L  N  N  P  A  E  S  N  H  T  T  I  G  G  D  A  G  Y  F  A  T  I  R  K  L  F  S  Y  V  N  P  L  S  Y  L  G  G  S  S  N  T  S  N  T  A  R  D  S  I  W  Q  Y   : G  V  G  Y  M  K  H  C  W  L  F  F  S  I  L  N  S  S  K  D  K  L  M  Q  S  E  L  K  A  L  E  V  L  F  I  F  S  S  V  I  *  R  H  L  F  P  D  L  V  P  D  F  G  L  S  V  *  L  L  L  H  V  L  I  S  Y  F  T  L  A  F  T  D  *  I  K  Q  *  V  C  N  *  A  F  Q  D  P  L  S  G  V  W  N  *  V  L  L  K  M  F  Y  L  *  M  D  E  I  R  A  *  L  I  D  S  E  V  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44003" stop="43772"/>
                    <exon start="43564" stop="43443"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLGLHNRQALIIVLRNKVDVTSLHGLNNPAESNHTTIGGDAGYFATIRKLFSYVNPLSYLGGSSNTSNTARDSIWQYGVGYMKHCWLFFSILNSSKDKLMQSELKALEVLFIFSSVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="54259" PGL_stop="46208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54259" e_stop="54161"/>
            <exon e_start="52967" e_stop="52868"/>
            <exon e_start="52441" e_stop="52389"/>
            <exon e_start="52290" e_stop="52209"/>
            <exon e_start="49904" e_stop="49839"/>
            <exon e_start="49721" e_stop="49654"/>
            <exon e_start="46846" e_stop="46640"/>
            <exon e_start="46562" e_stop="46208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.086" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.617" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="54259" e_stop="54161" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.086">
            <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52967" e_stop="52868" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="52389" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.797">
            <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52290" e_stop="52209" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49904" e_stop="49839" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.617" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49838" i_stop="49722" i_length="117"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49721" e_stop="49654" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46846" e_stop="46640" e_length="207"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="46562" e_stop="46208" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54259" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49839"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCGGTAAAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT : ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG : GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA : GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT : ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACG : GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG : GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG : GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAAGCAGGGAAAGACCCCGAGATAAATATAGTTGAAGATGCAGCTGCTGAGTCAGATGATTCGTCAAATATATTTCATGATGTTTGTTTAAACATTAGATTGCCTGATGGTTCAAGTT</gDNA_template>
            <first_frame> F  S  V  K  N  R  F  H  P  C  L  K  S  I  H  F  R  V  L  A  Q  N  S  D  *  S  E  *  R  R  N  Q  A  :  M  E  Q  L  L  S  P  L  V  F  N  G  S  T  V  E  A  I  T  E  A  K  Q  K  K  K  L  F  V  V  L  V  S   : G  G  N  M  E  S  N  Q  S  E  T  S  T  W  L  D  P  R  :  V  A  D  S  I  S  K  Y  C  I  L  L  H  I  L  E  G  S  T  D  A  R  N  F  S  A  L   : Y  P  Q  E  A  I  P  C  I  T  V  I  G  Y  N  G  V  Q  L  W  Q  H   : G  G  F  V  S  A  E  N  L  A  S  S  L  E  K  A  W  L  S  L  H  V  Q  :  D  T  T  T  T  L  L  T  A  A  L  A  S  R  K  D  L  V  S  G  A  S  S  V  T  A  E  V  G  S  S  S  S  A  Q  V  S  P  A  Q  A  I  T  H  I  Q  S  P  L  A  T  L  S  K  N  S  Q  I  V  E  G  E  D  P  G  H  A  A  M  :  D  I  D  S  S  L  I  D  M  D  S  H  G  S  A  D  A  F  E  S  R  I  G  D  F  N  E  S  T  T  V  I  T  T  A  E  K  P  L  D  L  V  E  V  D  S  N  K  G  K  D  E  C  S  M  S  K  E  N  P  G  L  R  D  Q  H  L  D  P  S  D  E  A  P  R  E  I  A  N  K  A  G  K  D  P  E  I  N  I  V  E  D  A  A  A  E  S  D  D  S  S  N  I  F  H  D  V  C  L  N  I  R  L  P  D  G  S  S  </first_frame>
            <second_frame>  F  R  *  K  T  V  S  T  L  V  *  K  A  F  I  L  E  F  W  L  K  I  P  I  D  R  S  E  G  A  I  K  L :   W  S  N  F  Y  L  L  S  C  S  M  V  L  L  *  K  P  S  L  K  P  S  R  R  R  S  F  L  *  F  L  F  Q  :  V  A  I  W  N  Q  I  N  R  K  H  Q  L  G  L  T  Q  E :   L  L  I  L  Y  L  S  T  A  F  C  C  T  S  *  K  E  V  L  M  P  E  T  S  Q  H  C  :  I  H  R  R  L  S  L  V  L  Q  L  L  D  T  M  V  F  N  Y  G  N  T  :  G  V  L  F  L  L  K  I  L  H  L  V  L  R  R  R  G  *  V  F  M  F  R :   I  Q  Q  L  L  C  *  L  L  H  L  L  Q  G  K  I  L  Y  L  E  L  L  L  *  Q  L  K  *  G  V  L  Q  V  L  K  F  H  Q  L  R  R  L  H  I  F  N  L  H  W  L  H  C  L  K  T  L  R  *  *  R  E  R  I  L  D  M  L  L  W :   T  *  I  P  R  *  L  T  W  I  L  M  D  Q  Q  M  P  L  N  L  E  L  V  T  S  M  S  L  P  L  *  S  Q  Q  Q  K  N  H  L  I  L  *  K  *  I  Q  T  R  V  K  M  N  V  Q  C  Q  K  R  I  L  V  C  V  I  N  I  W  T  L  V  M  K  L  L  E  R  L  Q  I  K  Q  G  K  T  P  R  *  I  *  L  K  M  Q  L  L  S  Q  M  I  R  Q  I  Y  F  M  M  F  V  *  T  L  D  C  L  M  V  Q  V </second_frame>
            <third_frame>   F  G  K  K  P  F  P  P  L  F  E  K  H  S  F  *  S  F  G  S  K  F  R  L  I  G  V  K  A  Q  S  S   : Y  G  A  T  F  I  S  S  R  V  Q  W  F  Y  C  R  S  H  H  *  S  Q  A  E  E  E  A  F  C  S  S  C  F  R :   W  Q  Y  G  I  K  S  I  G  N  I  N  L  A  *  P  K   : S  C  *  F  Y  I  *  V  L  H  F  V  A  H  P  R  R  K  Y  *  C  Q  K  L  L  S  I  V :   S  T  G  G  Y  P  L  Y  Y  S  Y  W  I  Q  W  C  S  T  M  A  T  R :   G  F  C  F  C  *  K  S  C  I  *  S  *  E  G  V  V  K  S  S  C  S   : G  Y  N  N  Y  F  V  D  C  C  T  C  F  K  E  R  S  C  I  W  S  F  F  C  N  S  *  S  R  E  F  F  K  C  S  S  F  T  S  S  G  D  Y  T  Y  S  I  S  I  G  Y  T  V  *  K  L  S  D  S  R  G  R  G  S  W  T  C  C  Y   : G  H  R  F  L  A  D  *  H  G  F  S  W  I  S  R  C  L  *  I  *  N  W  *  L  Q  *  V  Y  H  C  D  H  N  S  R  K  T  T  *  S  C  R  S  R  F  K  Q  G  *  R  *  M  F  N  V  K  R  E  S  W  F  A  *  S  T  F  G  P  *  *  *  S  S  *  R  D  C  K  *  S  R  E  R  P  R  D  K  Y  S  *  R  C  S  C  *  V  R  *  F  V  K  Y  I  S  *  C  L  F  K  H  *  I  A  *  W  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54175" stop="54161"/>
                    <exon start="52967" stop="52868"/>
                    <exon start="52441" stop="52389"/>
                    <exon start="52290" stop="52209"/>
                    <exon start="49904" stop="49839"/>
                    <exon start="49721" stop="49654"/>
                    <exon start="46846" stop="46640"/>
                    <exon start="46562" stop="46209"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNQAMEQLLSPLVFNGSTVEAITEAKQKKKLFVVLVSGGNMESNQSETSTWLDPRVADSISKYCILLHILEGSTDARNFSALYPQEAIPCITVIGYNGVQLWQHGGFVSAENLASSLEKAWLSLHVQDTTTTLLTAALASRKDLVSGASSVTAEVGSSSSAQVSPAQAITHIQSPLATLSKNSQIVEGEDPGHAAMDIDSSLIDMDSHGSADAFESRIGDFNESTTVITTAEKPLDLVEVDSNKGKDECSMSKENPGLRDQHLDPSDEAPREIANKAGKDPEINIVEDAAAESDDSSNIFHDVCLNIRLPDGSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50073" e_stop="49654"/>
            <exon e_start="46846" e_stop="46640"/>
            <exon e_start="46562" e_stop="46323"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="50073" e_stop="49654" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="46846" e_stop="46640" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="46562" e_stop="46323" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50073" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGAGTTCAGTAGTTAGTGTGATCTACAGTGGTAGTGTTCTCGAAGCCATTTAAAACTTTGTGAATTCTTTCTTGGTTGATGAGTCTTATAATTCGGAAATCTTGCTGTCAATGCCATGCTGTCTATGTGCACTTTTCATGTAGATATACCCTTACATGAGCTACATAGATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTGGTAATAAAAAACATGGCATGATTAGTTGTTTGAGACGTAACTGAGTTGTTGCATCTCTTTCTTATCTCTTAATTATGTATCTAATTTTAGGGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG : GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG : GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCTAGAGAGATTGCAAATAAA</gDNA_template>
            <first_frame> R  S  S  V  V  S  V  I  Y  S  G  S  V  L  E  A  I  *  N  F  V  N  S  F  L  V  D  E  S  Y  N  S  E  I  L  L  S  M  P  C  C  L  C  A  L  F  M  *  I  Y  P  Y  M  S  Y  I  D  P  Q  E  A  I  P  C  I  T  V  I  G  Y  N  G  V  Q  L  W  Q  H  G  M  D  Q  L  N  L  M  F  G  N  K  K  H  G  M  I  S  C  L  R  R  N  *  V  V  A  S  L  S  Y  L  L  I  M  Y  L  I  L  G  G  F  V  S  A  E  N  L  A  S  S  L  E  K  A  W  L  S  L  H  V  Q  :  D  T  T  T  T  L  L  T  A  A  L  A  S  R  K  D  L  V  S  G  A  S  S  V  T  A  E  V  G  S  S  S  S  A  Q  V  S  P  A  Q  A  I  T  H  I  Q  S  P  L  A  T  L  S  K  N  S  Q  I  V  E  G  E  D  P  G  H  A  A  M  :  D  I  D  S  S  L  I  D  M  D  S  H  G  S  A  D  A  F  E  S  R  I  G  D  F  N  E  S  T  T  V  I  T  T  A  E  K  P  L  D  L  V  E  V  D  S  N  K  G  K  D  E  C  S  M  S  K  E  N  P  G  L  R  D  Q  H  L  D  P  S  D  E  A  P  R  E  I  A  N  K </first_frame>
            <second_frame>  G  V  Q  *  L  V  *  S  T  V  V  V  F  S  K  P  F  K  T  L  *  I  L  S  W  L  M  S  L  I  I  R  K  S  C  C  Q  C  H  A  V  Y  V  H  F  S  C  R  Y  T  L  T  *  A  T  *  I  H  R  R  L  S  L  V  L  Q  L  L  D  T  M  V  F  N  Y  G  N  T  V  W  I  S  L  I  *  C  L  V  I  K  N  M  A  *  L  V  V  *  D  V  T  E  L  L  H  L  F  L  I  S  *  L  C  I  *  F  *  G  V  L  F  L  L  K  I  L  H  L  V  L  R  R  R  G  *  V  F  M  F  R :   I  Q  Q  L  L  C  *  L  L  H  L  L  Q  G  K  I  L  Y  L  E  L  L  L  *  Q  L  K  *  G  V  L  Q  V  L  K  F  H  Q  L  R  R  L  H  I  F  N  L  H  W  L  H  C  L  K  T  L  R  *  *  R  E  R  I  L  D  M  L  L  W :   T  *  I  P  R  *  L  T  W  I  L  M  D  Q  Q  M  P  L  N  L  E  L  V  T  S  M  S  L  P  L  *  S  Q  Q  Q  K  N  H  L  I  L  *  K  *  I  Q  T  R  V  K  M  N  V  Q  C  Q  K  R  I  L  V  C  V  I  N  I  W  T  L  V  M  K  L  L  E  R  L  Q  I   </second_frame>
            <third_frame>   E  F  S  S  *  C  D  L  Q  W  *  C  S  R  S  H  L  K  L  C  E  F  F  L  G  *  *  V  L  *  F  G  N  L  A  V  N  A  M  L  S  M  C  T  F  H  V  D  I  P  L  H  E  L  H  R  S  T  G  G  Y  P  L  Y  Y  S  Y  W  I  Q  W  C  S  T  M  A  T  R  Y  G  S  A  *  S  N  V  W  *  *  K  T  W  H  D  *  L  F  E  T  *  L  S  C  C  I  S  F  L  S  L  N  Y  V  S  N  F  R  G  F  C  F  C  *  K  S  C  I  *  S  *  E  G  V  V  K  S  S  C  S   : G  Y  N  N  Y  F  V  D  C  C  T  C  F  K  E  R  S  C  I  W  S  F  F  C  N  S  *  S  R  E  F  F  K  C  S  S  F  T  S  S  G  D  Y  T  Y  S  I  S  I  G  Y  T  V  *  K  L  S  D  S  R  G  R  G  S  W  T  C  C  Y   : G  H  R  F  L  A  D  *  H  G  F  S  W  I  S  R  C  L  *  I  *  N  W  *  L  Q  *  V  Y  H  C  D  H  N  S  R  K  T  T  *  S  C  R  S  R  F  K  Q  G  *  R  *  M  F  N  V  K  R  E  S  W  F  A  *  S  T  F  G  P  *  *  *  S  S  *  R  D  C  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49767" stop="49654"/>
                    <exon start="46846" stop="46640"/>
                    <exon start="46562" stop="46323"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVASLSYLLIMYLILGGFVSAENLASSLEKAWLSLHVQDTTTTLLTAALASRKDLVSGASSVTAEVGSSSSAQVSPAQAITHIQSPLATLSKNSQIVEGEDPGHAAMDIDSSLIDMDSHGSADAFESRIGDFNESTTVITTAEKPLDLVEVDSNKGKDECSMSKENPGLRDQHLDPSDEAPREIANK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="54182" e_stop="54161"/>
            <exon e_start="52967" e_stop="52868"/>
            <exon e_start="52441" e_stop="52389"/>
            <exon e_start="52290" e_stop="52209"/>
            <exon e_start="49904" e_stop="49812"/>
            <exon e_start="49721" e_stop="49654"/>
            <exon e_start="46846" e_stop="46640"/>
            <exon e_start="46562" e_stop="46341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.086" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54182" e_stop="54161" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.086">
            <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52967" e_stop="52868" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="52389" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.797">
            <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52290" e_stop="52209" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52208" i_stop="49905" i_length="2304"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49904" e_stop="49812" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="49811" i_stop="49722" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="49721" e_stop="49654" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="49653" i_stop="46847" i_length="2807"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="46846" e_stop="46640" e_length="207"/>
          </exon>
          <intron i_serial="7" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46639" i_stop="46563" i_length="77"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="46562" e_stop="46341" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54182" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="52209"/>
              <exon start="49904" stop="49812"/>
              <exon start="49721" stop="49654"/>
              <exon start="46846" stop="46640"/>
              <exon start="46562" stop="46341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGTGAAGGCGCAATCAAGCT : ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG : GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA : GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGT : ATCCACAGGAGGCTATCCCTTGTATTACAGTTATTGGATACAATGGTGTTCAACTATGGCAACACGGTATGGATCAGCTTAATCTAATGTTTG : GGGGTTTTGTTTCTGCTGAAAATCTTGCATCTAGTCTTGAGAAGGCGTGGTTAAGTCTTCATGTTCAG : GATACAACAACTACTTTGTTGACTGCTGCACTTGCTTCAAGGAAAGATCTTGTATCTGGAGCTTCTTCTGTAACAGCTGAAGTAGGGAGTTCTTCAAGTGCTCAAGTTTCACCAGCTCAGGCGATTACACATATTCAATCTCCATTGGCTACACTGTCTAAAAACTCTCAGATAGTAGAGGGAGAGGATCCTGGACATGCTGCTATG : GACATAGATTCCTCGCTGATTGACATGGATTCTCATGGATCAGCAGATGCCTTTGAATCTAGAATTGGTGACTTCAATGAGTCTACCACTGTGATCACAACAGCAGAAAAACCACTTGATCTTGTAGAAGTAGATTCAAACAAGGGTAAAGATGAATGTTCAATGTCAAAAGAGAATCCTGGTTTGCGTGATCAACATTTGGACCCTAGTGATGAAGCTCCT</gDNA_template>
            <first_frame> G  V  K  A  Q  S  S   : Y  G  A  T  F  I  S  S  R  V  Q  W  F  Y  C  R  S  H  H  *  S  Q  A  E  E  E  A  F  C  S  S  C  F  R :   W  Q  Y  G  I  K  S  I  G  N  I  N  L  A  *  P  K   : S  C  *  F  Y  I  *  V  L  H  F  V  A  H  P  R  R  K  Y  *  C  Q  K  L  L  S  I  V :   S  T  G  G  Y  P  L  Y  Y  S  Y  W  I  Q  W  C  S  T  M  A  T  R  Y  G  S  A  *  S  N  V  W :   G  F  C  F  C  *  K  S  C  I  *  S  *  E  G  V  V  K  S  S  C  S   : G  Y  N  N  Y  F  V  D  C  C  T  C  F  K  E  R  S  C  I  W  S  F  F  C  N  S  *  S  R  E  F  F  K  C  S  S  F  T  S  S  G  D  Y  T  Y  S  I  S  I  G  Y  T  V  *  K  L  S  D  S  R  G  R  G  S  W  T  C  C  Y   : G  H  R  F  L  A  D  *  H  G  F  S  W  I  S  R  C  L  *  I  *  N  W  *  L  Q  *  V  Y  H  C  D  H  N  S  R  K  T  T  *  S  C  R  S  R  F  K  Q  G  *  R  *  M  F  N  V  K  R  E  S  W  F  A  *  S  T  F  G  P  *  *  *  S  S  </first_frame>
            <second_frame>  E  *  R  R  N  Q  A  :  M  E  Q  L  L  S  P  L  V  F  N  G  S  T  V  E  A  I  T  E  A  K  Q  K  K  K  L  F  V  V  L  V  S   : G  G  N  M  E  S  N  Q  S  E  T  S  T  W  L  D  P  R  :  V  A  D  S  I  S  K  Y  C  I  L  L  H  I  L  E  G  S  T  D  A  R  N  F  S  A  L   : Y  P  Q  E  A  I  P  C  I  T  V  I  G  Y  N  G  V  Q  L  W  Q  H  G  M  D  Q  L  N  L  M  F   : G  G  F  V  S  A  E  N  L  A  S  S  L  E  K  A  W  L  S  L  H  V  Q  :  D  T  T  T  T  L  L  T  A  A  L  A  S  R  K  D  L  V  S  G  A  S  S  V  T  A  E  V  G  S  S  S  S  A  Q  V  S  P  A  Q  A  I  T  H  I  Q  S  P  L  A  T  L  S  K  N  S  Q  I  V  E  G  E  D  P  G  H  A  A  M  :  D  I  D  S  S  L  I  D  M  D  S  H  G  S  A  D  A  F  E  S  R  I  G  D  F  N  E  S  T  T  V  I  T  T  A  E  K  P  L  D  L  V  E  V  D  S  N  K  G  K  D  E  C  S  M  S  K  E  N  P  G  L  R  D  Q  H  L  D  P  S  D  E  A  P </second_frame>
            <third_frame>   S  E  G  A  I  K  L :   W  S  N  F  Y  L  L  S  C  S  M  V  L  L  *  K  P  S  L  K  P  S  R  R  R  S  F  L  *  F  L  F  Q  :  V  A  I  W  N  Q  I  N  R  K  H  Q  L  G  L  T  Q  E :   L  L  I  L  Y  L  S  T  A  F  C  C  T  S  *  K  E  V  L  M  P  E  T  S  Q  H  C  :  I  H  R  R  L  S  L  V  L  Q  L  L  D  T  M  V  F  N  Y  G  N  T  V  W  I  S  L  I  *  C  L  :  G  V  L  F  L  L  K  I  L  H  L  V  L  R  R  R  G  *  V  F  M  F  R :   I  Q  Q  L  L  C  *  L  L  H  L  L  Q  G  K  I  L  Y  L  E  L  L  L  *  Q  L  K  *  G  V  L  Q  V  L  K  F  H  Q  L  R  R  L  H  I  F  N  L  H  W  L  H  C  L  K  T  L  R  *  *  R  E  R  I  L  D  M  L  L  W :   T  *  I  P  R  *  L  T  W  I  L  M  D  Q  Q  M  P  L  N  L  E  L  V  T  S  M  S  L  P  L  *  S  Q  Q  Q  K  N  H  L  I  L  *  K  *  I  Q  T  R  V  K  M  N  V  Q  C  Q  K  R  I  L  V  C  V  I  N  I  W  T  L  V  M  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54175" stop="54161"/>
                    <exon start="52967" stop="52868"/>
                    <exon start="52441" stop="52389"/>
                    <exon start="52290" stop="52209"/>
                    <exon start="49904" stop="49812"/>
                    <exon start="49721" stop="49654"/>
                    <exon start="46846" stop="46640"/>
                    <exon start="46562" stop="46341"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNQAMEQLLSPLVFNGSTVEAITEAKQKKKLFVVLVSGGNMESNQSETSTWLDPRVADSISKYCILLHILEGSTDARNFSALYPQEAIPCITVIGYNGVQLWQHGMDQLNLMFGGFVSAENLASSLEKAWLSLHVQDTTTTLLTAALASRKDLVSGASSVTAEVGSSSSAQVSPAQAITHIQSPLATLSKNSQIVEGEDPGHAAMDIDSSLIDMDSHGSADAFESRIGDFNESTTVITTAEKPLDLVEVDSNKGKDECSMSKENPGLRDQHLDPSDEAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="54250" e_stop="54161"/>
            <exon e_start="52967" e_stop="52868"/>
            <exon e_start="52441" e_stop="52389"/>
            <exon e_start="52290" e_stop="51726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.086" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.797" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54250" e_stop="54161" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.086">
            <gDNA_intron_boundary i_start="54160" i_stop="52968" i_length="1193"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52967" e_stop="52868" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="52867" i_stop="52442" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="52389" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.797">
            <gDNA_intron_boundary i_start="52388" i_stop="52291" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="52290" e_stop="51726" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54250" stop="54161"/>
              <exon start="52967" stop="52868"/>
              <exon start="52441" stop="52389"/>
              <exon start="52290" stop="51726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACCGTTTCCACCCTTGTTTGAAAAGCATTCATTTTAGAGTTTTGGCTCAAAATTCCGATTGATCGGAGTGAAGGCGCAATCAAGCT : ATGGAGCAACTTTTATCTCCTCTCGTGTTCAATGGTTCTACTGTAGAAGCCATCACTGAAGCCAAGCAGAAGAAGAAGCTTTTTGTAGTTCTTGTTTCAG : GTGGCAATATGGAATCAAATCAATCGGAAACATCAACTTGGCTTGACCCAAGA : GTTGCTGATTCTATATCTAAGTACTGCATTTTGTTGCACATCCTAGAAGGAAGTACTGATGCCAGAAACTTCTCAGCATTGTGTATCCTTTGCCTGTATAAAGTTTCTCCCCCCCTCCCCCTTGAGATACTCTATTCCTCGTCTAATTTCTTTTGTTTCTTTACACATCCCTCTATCAGTGCAGGGAGTTTTGTTTTCTTTGTCTATTAATTGCGCGTATTCTGAGAGGGTGAGGGATCTTTCTCTTCTGAATCACCATGAGCTTGGAGCTCATGCTAGATATCATAAACAAGGAATTCTAGGACCTGATTTATGGAAATTTTCTAGCTGAAATTTTGTAAATGGAGTTGGTTAAAGAAACTTCAAGCAGAGGTGACGCTTAGATGTGTTATACAAAAAATTCATCTAAATGGAAGCGAAATAAAACTATATTTTGGGGCAAGTGTAGACTTTATAAACAGATACAATTGGTGCAAGGGTCTCCCTCTGTCTAACAGAAGAACATTCATCATCCTGCTGGCAACTTTCCAGGGTAACCGGGTCAATGTCAATACTGACTGGCTTT</gDNA_template>
            <first_frame> K  N  R  F  H  P  C  L  K  S  I  H  F  R  V  L  A  Q  N  S  D  *  S  E  *  R  R  N  Q  A  :  M  E  Q  L  L  S  P  L  V  F  N  G  S  T  V  E  A  I  T  E  A  K  Q  K  K  K  L  F  V  V  L  V  S   : G  G  N  M  E  S  N  Q  S  E  T  S  T  W  L  D  P  R  :  V  A  D  S  I  S  K  Y  C  I  L  L  H  I  L  E  G  S  T  D  A  R  N  F  S  A  L  C  I  L  C  L  Y  K  V  S  P  P  L  P  L  E  I  L  Y  S  S  S  N  F  F  C  F  F  T  H  P  S  I  S  A  G  S  F  V  F  F  V  Y  *  L  R  V  F  *  E  G  E  G  S  F  S  S  E  S  P  *  A  W  S  S  C  *  I  S  *  T  R  N  S  R  T  *  F  M  E  I  F  *  L  K  F  C  K  W  S  W  L  K  K  L  Q  A  E  V  T  L  R  C  V  I  Q  K  I  H  L  N  G  S  E  I  K  L  Y  F  G  A  S  V  D  F  I  N  R  Y  N  W  C  K  G  L  P  L  S  N  R  R  T  F  I  I  L  L  A  T  F  Q  G  N  R  V  N  V  N  T  D  W  L  </first_frame>
            <second_frame>  K  T  V  S  T  L  V  *  K  A  F  I  L  E  F  W  L  K  I  P  I  D  R  S  E  G  A  I  K  L :   W  S  N  F  Y  L  L  S  C  S  M  V  L  L  *  K  P  S  L  K  P  S  R  R  R  S  F  L  *  F  L  F  Q  :  V  A  I  W  N  Q  I  N  R  K  H  Q  L  G  L  T  Q  E :   L  L  I  L  Y  L  S  T  A  F  C  C  T  S  *  K  E  V  L  M  P  E  T  S  Q  H  C  V  S  F  A  C  I  K  F  L  P  P  S  P  L  R  Y  S  I  P  R  L  I  S  F  V  S  L  H  I  P  L  S  V  Q  G  V  L  F  S  L  S  I  N  C  A  Y  S  E  R  V  R  D  L  S  L  L  N  H  H  E  L  G  A  H  A  R  Y  H  K  Q  G  I  L  G  P  D  L  W  K  F  S  S  *  N  F  V  N  G  V  G  *  R  N  F  K  Q  R  *  R  L  D  V  L  Y  K  K  F  I  *  M  E  A  K  *  N  Y  I  L  G  Q  V  *  T  L  *  T  D  T  I  G  A  R  V  S  L  C  L  T  E  E  H  S  S  S  C  W  Q  L  S  R  V  T  G  S  M  S  I  L  T  G  F </second_frame>
            <third_frame>   K  P  F  P  P  L  F  E  K  H  S  F  *  S  F  G  S  K  F  R  L  I  G  V  K  A  Q  S  S   : Y  G  A  T  F  I  S  S  R  V  Q  W  F  Y  C  R  S  H  H  *  S  Q  A  E  E  E  A  F  C  S  S  C  F  R :   W  Q  Y  G  I  K  S  I  G  N  I  N  L  A  *  P  K   : S  C  *  F  Y  I  *  V  L  H  F  V  A  H  P  R  R  K  Y  *  C  Q  K  L  L  S  I  V  Y  P  L  P  V  *  S  F  S  P  P  P  P  *  D  T  L  F  L  V  *  F  L  L  F  L  Y  T  S  L  Y  Q  C  R  E  F  C  F  L  C  L  L  I  A  R  I  L  R  G  *  G  I  F  L  F  *  I  T  M  S  L  E  L  M  L  D  I  I  N  K  E  F  *  D  L  I  Y  G  N  F  L  A  E  I  L  *  M  E  L  V  K  E  T  S  S  R  G  D  A  *  M  C  Y  T  K  N  S  S  K  W  K  R  N  K  T  I  F  W  G  K  C  R  L  Y  K  Q  I  Q  L  V  Q  G  S  P  S  V  *  Q  K  N  I  H  H  P  A  G  N  F  P  G  *  P  G  Q  C  Q  Y  *  L  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54175" stop="54161"/>
                    <exon start="52967" stop="52868"/>
                    <exon start="52441" stop="52389"/>
                    <exon start="52290" stop="52081"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNQAMEQLLSPLVFNGSTVEAITEAKQKKKLFVVLVSGGNMESNQSETSTWLDPRVADSISKYCILLHILEGSTDARNFSALCILCLYKVSPPLPLEILYSSSNFFCFFTHPSISAGSFVFFVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51963" stop="51727"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKFCKWSWLKKLQAEVTLRCVIQKIHLNGSEIKLYFGASVDFINRYNWCKGLPLSNRRTFIILLATFQGNRVNVNTDWL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="55704" PGL_stop="57406"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55704" e_stop="56240"/>
            <exon e_start="56321" e_stop="56480"/>
            <exon e_start="56553" e_stop="57260"/>
            <exon e_start="57378" e_stop="57406"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.983"/>
          <exon-only e_score="0.759"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55704" e_stop="56240" e_length="537"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="56241" i_stop="56320" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56321" e_stop="56480" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.886">
            <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="56553" e_stop="57260" e_length="708"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57261" i_stop="57377" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="0.759">
            <gDNA_exon_boundary e_start="57378" e_stop="57406" e_length="29"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55704" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="57260"/>
              <exon start="57378" stop="57406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55866" stop="56240"/>
              <exon start="56321" stop="56366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56232" stop="56240"/>
              <exon start="56321" stop="56480"/>
              <exon start="56553" stop="57066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56815" stop="57113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333963" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCTTTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGTTGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGATGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGCTCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT : GTGGTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG : GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGCTTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAGGCAAACATCTCTGTTACCCATACTTTGATACGGAGCTATCATTGTTTTGCCGAAAATAACATAATTATAAAGCCTATTTCTGAAGAA : AAAGAAAAGAAAAAAGAAGATAAAAACAT</gDNA_template>
            <first_frame> *  S  L  P  S  I  H  T  S  Q  T  I  S  T  V  S  S  Y  L  L  K  K  I  L  H  L  T  L  A  S  F  V  P  K  K  I  H  S  L  F  Y  S  I  H  F  L  L  R  K  *  R  *  G  *  L  *  F  C  F  C  W  *  S  L  G  V  L  F  M  E  M  R  M  S  H  S  G  S  N  P  H  *  *  R  R  *  R  V  P  R  C  V  *  R  I  G  S  A  T  N  C  L  N  F  V  V  I  *  Q  L  L  I  I  W  M  L  T  N  L  S  S  F  S  L  R  G  T  H  P  *  L  M  L  L  D  S  G  I  M  D  L  S  L  G  L  Q  H  F  T  S  L  L  D  L  V  P  P  V  V  R  K  C  R  *  R  R  L  L  L  F  L  D  M  S  V  A  K  L  L  :  V  V  M  V  S  P  L  A  D  H  S  L  M  V  Y  A  I  T  K  K  *  V  P  A  K  I  T  V  M  N  T  S  N  *  P  T  H  A  L  L  E  P  D  I  T  V  V  V  P  C  L  S  T   : G  T  T  I  M  E  L  L  V  K  P  S  S  L  I  S  W  I  I  L  N  T  L  N  K  M  L  P  W  L  S  R  L  P  F  G  G  G  *  T  Q  *  R  R  V  S  L  Q  L  M  M  P  L  W  A  T  G  S  P  Q  R  M  I  L  C  L  N  E  F  L  V  S  V  P  P  *  I  F  S  M  V  M  V  F  V  A  K  V  M  L  T  Q  *  T  T  S  S  P  I  T  S  T  T  L  T  *  W  G  L  V  A  R  K  Q  D  L  T  K  Y  S  T  A  P  N  K  N  L  L  T  Q  P  L  L  L  L  L  E  I  I  L  L  *  P  R  P  Y  N  K  R  W  E  S  *  L  P  F  *  L  F  Y  H  V  I  F  L  D  L  H  F  F  F  F  M  F  M  V  *  F  I  N  I  Y  I  Y  V  M  *  S  F  Y  V  V  I  C  K  T  A  I  L  L  S  C  C  I  S  S  P  G  K  H  L  C  Y  P  Y  F  D  T  E  L  S  L  F  C  R  K  *  H  N  Y  K  A  Y  F  *  R   : K  R  K  E  K  R  R  *  K  H </first_frame>
            <second_frame>  N  L  Y  R  P  F  T  H  H  K  Q  S  P  P  *  A  H  I  Y  *  K  R  Y  S  I  *  L  L  L  L  L  Y  Q  R  K  F  I  L  S  S  I  L  F  T  F  Y  *  E  N  E  D  E  D  D  Y  D  F  V  S  V  G  N  H  W  G  F  C  S  W  R  *  E  *  V  I  Q  E  A  T  H  T  S  E  D  G  E  G  Y  Q  D  V  C  E  G  L  G  V  Q  Q  I  V  *  I  L  L  *  F  D  N  Y  *  L  S  G  C  *  P  I  *  A  P  F  H  *  E  E  L  T  R  S  S  C  C  W  I  L  G  L  W  I  F  H  *  G  C  S  T  L  P  A  S  W  I  W  Y  H  R  W  *  E  N  A  D  E  G  D  C  C  F  F  W  T  C  R  *  Q  N  F  L :   W  L  W  C  R  H  W  R  T  T  R  L  W  S  M  L  *  Q  R  N  E  S  Q  P  R  L  L  *  *  I  L  Q  I  N  L  P  M  H  S  W  S  Q  I  L  R  S  W  C  L  A  Y  L  L  :  E  L  Q  L  W  S  Y  W  *  S  P  Q  A  *  S  L  G  S  S  *  I  H  *  T  K  C  Y  H  G  F  P  G  C  H  L  E  V  D  E  P  N  E  E  G  S  A  F  S  S  *  C  L  C  G  Q  L  E  A  H  K  E  *  Y  F  V  *  T  S  S  W  F  R  Y  H  H  E  Y  S  L  W  *  W  C  L  W  P  R  *  C  *  R  N  E  Q  H  R  L  P  L  P  L  L  P  *  L  D  G  G  W  S  R  G  S  R  T  S  R  S  T  Q  L  R  R  T  K  T  F  *  P  N  R  C  C  C  F  L  R  S  S  Y  F  S  P  A  H  T  I  N  V  G  N  H  N  C  H  S  S  C  S  I  M  *  Y  F  W  T  C  I  F  F  F  L  C  S  W  F  D  L  *  I  Y  I  Y  M  *  C  E  A  S  M  L  *  F  V  K  L  Q  F  Y  C  P  V  A  F  H  P  Q  A  N  I  S  V  T  H  T  L  I  R  S  Y  H  C  F  A  E  N  N  I  I  I  K  P  I  S  E  E  :  K  E  K  K  K  E  D  K  N   </second_frame>
            <third_frame>   I  S  T  V  H  S  H  I  T  N  N  L  H  R  K  L  I  F  I  E  K  D  T  P  S  N  S  C  F  F  C  T  K  E  N  S  F  S  L  L  F  Y  S  L  S  T  K  K  M  K  M  R  M  I  M  I  L  F  L  L  V  I  I  G  G  F  V  H  G  D  E  N  E  S  F  R  K  Q  P  T  L  V  K  T  V  K  G  T  K  M  C  V  K  D  W  E  C  N  K  L  S  K  F  C  C  N  L  T  I  T  D  Y  L  D  V  D  Q  F  E  L  L  F  T  K  R  N  S  P  V  A  H  A  V  G  F  W  D  Y  G  S  F  I  R  A  A  A  L  Y  Q  P  L  G  F  G  T  T  G  G  K  K  M  Q  M  K  E  I  A  A  F  F  G  H  V  G  S  K  T  S   : C  G  Y  G  V  A  T  G  G  P  L  A  Y  G  L  C  Y  N  K  E  M  S  P  S  Q  D  Y  C  D  E  Y  F  K  L  T  Y  P  C  T  P  G  A  R  Y  Y  G  R  G  A  L  P  I  Y  W :   N  Y  N  Y  G  A  I  G  E  A  L  K  L  N  L  L  D  H  P  E  Y  I  E  Q  N  A  T  M  A  F  Q  A  A  I  W  R  W  M  N  P  M  K  K  G  Q  P  S  A  H  D  A  F  V  G  N  W  K  P  T  K  N  D  T  L  S  K  R  V  P  G  F  G  T  T  M  N  I  L  Y  G  D  G  V  C  G  Q  G  D  V  D  A  M  N  N  I  V  S  H  Y  L  Y  Y  L  D  L  M  G  V  G  R  E  E  A  G  P  H  E  V  L  N  C  A  E  Q  K  P  F  N  P  T  A  V  A  A  S  *  D  H  P  T  L  A  P  P  I  Q  *  T  L  G  I  I  I  A  I  L  V  V  L  S  C  N  I  F  G  L  A  F  F  F  F  Y  V  H  G  L  I  Y  K  Y  I  Y  I  C  N  V  K  L  L  C  C  N  L  *  N  C  N  S  T  V  L  L  H  F  I  P  R  Q  T  S  L  L  P  I  L  *  Y  G  A  I  I  V  L  P  K  I  T  *  L  *  S  L  F  L  K  K :   K  K  R  K  K  K  I  K  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55706" stop="56240"/>
                    <exon start="56321" stop="56480"/>
                    <exon start="56553" stop="56961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISTVHSHITNNLHRKLIFIEKDTPSNSCFFCTKENSFSLLFYSLSTKKMKMRMIMILFLLVIIGGFVHGDENESFRKQPTLVKTVKGTKMCVKDWECNKLSKFCCNLTITDYLDVDQFELLFTKRNSPVAHAVGFWDYGSFIRAAALYQPLGFGTTGGKKMQMKEIAAFFGHVGSKTSCGYGVATGGPLAYGLCYNKEMSPSQDYCDEYFKLTYPCTPGARYYGRGALPIYWNYNYGAIGEALKLNLLDHPEYIEQNATMAFQAAIWRWMNPMKKGQPSAHDAFVGNWKPTKNDTLSKRVPGFGTTMNILYGDGVCGQGDVDAMNNIVSHYLYYLDLMGVGREEAGPHEVLNCAEQKPFNPTAVAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="56100" e_stop="56240"/>
            <exon e_start="56351" e_stop="56480"/>
            <exon e_start="56553" e_stop="57113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.886" e_score="0.862"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56100" e_stop="56240" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56241" i_stop="56350" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="0.862">
            <gDNA_exon_boundary e_start="56351" e_stop="56480" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.886">
            <gDNA_intron_boundary i_start="56481" i_stop="56552" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="56553" e_stop="57113" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56100" stop="56240"/>
              <exon start="56351" stop="56480"/>
              <exon start="56553" stop="57104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56815" stop="57113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333963" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGCCTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTT : TCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACTTCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTG : GAACTACAATTATGGAGCTATTGGTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGATGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTGGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAGTTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCCATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTAACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTGTTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAA</gDNA_template>
            <first_frame> L  L  D  S  G  I  M  D  L  S  L  G  L  Q  H  F  T  S  L  L  D  L  V  P  P  V  V  R  K  C  R  *  R  R  L  L  L  F  L  D  M  S  V  A  K  L  L  :  S  L  M  V  Y  A  I  T  K  K  *  V  P  A  K  I  T  V  M  N  T  S  N  *  P  T  H  A  L  L  E  P  D  I  T  V  V  V  P  C  L  S  T   : G  T  T  I  M  E  L  L  V  K  P  S  S  L  I  S  W  I  I  L  N  T  L  N  K  M  L  P  W  L  S  R  L  P  F  G  G  G  *  T  Q  *  R  R  V  S  L  Q  L  M  M  P  L  W  A  T  G  S  P  Q  R  M  I  L  C  L  N  E  F  L  V  S  V  P  P  *  I  F  S  M  V  M  V  F  V  A  K  V  M  L  T  Q  *  T  T  S  S  P  I  T  S  T  T  L  T  *  W  G  L  V  A  R  K  Q  D  L  T  K  Y  S  T  A  P  N  K  N  L  L  T  Q  P  L  L  L  L  L  E  I  I  L  L  *  P  R  P  Y  N  K  R  W  E  S  *  L  P  F  *  L  F  Y  H  V  I  F  L  D  L  H  F  F  F  F  M  F  M  V  *  F  I  N  I  Y  I  Y  V  M  *  </first_frame>
            <second_frame>  C  W  I  L  G  L  W  I  F  H  *  G  C  S  T  L  P  A  S  W  I  W  Y  H  R  W  *  E  N  A  D  E  G  D  C  C  F  F  W  T  C  R  *  Q  N  F  F :   R  L  W  S  M  L  *  Q  R  N  E  S  Q  P  R  L  L  *  *  I  L  Q  I  N  L  P  M  H  S  W  S  Q  I  L  R  S  W  C  L  A  Y  L  L  :  E  L  Q  L  W  S  Y  W  *  S  P  Q  A  *  S  L  G  S  S  *  I  H  *  T  K  C  Y  H  G  F  P  G  C  H  L  E  V  D  E  P  N  E  E  G  S  A  F  S  S  *  C  L  C  G  Q  L  E  A  H  K  E  *  Y  F  V  *  T  S  S  W  F  R  Y  H  H  E  Y  S  L  W  *  W  C  L  W  P  R  *  C  *  R  N  E  Q  H  R  L  P  L  P  L  L  P  *  L  D  G  G  W  S  R  G  S  R  T  S  R  S  T  Q  L  R  R  T  K  T  F  *  P  N  R  C  C  C  F  L  R  S  S  Y  F  S  P  A  H  T  I  N  V  G  N  H  N  C  H  S  S  C  S  I  M  *  Y  F  W  T  C  I  F  F  F  L  C  S  W  F  D  L  *  I  Y  I  Y  M  *  C  E </second_frame>
            <third_frame>   V  G  F  W  D  Y  G  S  F  I  R  A  A  A  L  Y  Q  P  L  G  F  G  T  T  G  G  K  K  M  Q  M  K  E  I  A  A  F  F  G  H  V  G  S  K  T  S   : F  A  Y  G  L  C  Y  N  K  E  M  S  P  S  Q  D  Y  C  D  E  Y  F  K  L  T  Y  P  C  T  P  G  A  R  Y  Y  G  R  G  A  L  P  I  Y  W :   N  Y  N  Y  G  A  I  G  E  A  L  K  L  N  L  L  D  H  P  E  Y  I  E  Q  N  A  T  M  A  F  Q  A  A  I  W  R  W  M  N  P  M  K  K  G  Q  P  S  A  H  D  A  F  V  G  N  W  K  P  T  K  N  D  T  L  S  K  R  V  P  G  F  G  T  T  M  N  I  L  Y  G  D  G  V  C  G  Q  G  D  V  D  A  M  N  N  I  V  S  H  Y  L  Y  Y  L  D  L  M  G  V  G  R  E  E  A  G  P  H  E  V  L  N  C  A  E  Q  K  P  F  N  P  T  A  V  A  A  S  *  D  H  P  T  L  A  P  P  I  Q  *  T  L  G  I  I  I  A  I  L  V  V  L  S  C  N  I  F  G  L  A  F  F  F  F  Y  V  H  G  L  I  Y  K  Y  I  Y  I  C  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56102" stop="56240"/>
                    <exon start="56351" stop="56480"/>
                    <exon start="56553" stop="56961"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGFWDYGSFIRAAALYQPLGFGTTGGKKMQMKEIAAFFGHVGSKTSFAYGLCYNKEMSPSQDYCDEYFKLTYPCTPGARYYGRGALPIYWNYNYGAIGEALKLNLLDHPEYIEQNATMAFQAAIWRWMNPMKKGQPSAHDAFVGNWKPTKNDTLSKRVPGFGTTMNILYGDGVCGQGDVDAMNNIVSHYLYYLDLMGVGREEAGPHEVLNCAEQKPFNPTAVAAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="63406" PGL_stop="57405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63406" e_stop="62635"/>
            <exon e_start="62456" e_stop="62401"/>
            <exon e_start="61881" e_stop="61772"/>
            <exon e_start="61680" e_stop="61521"/>
            <exon e_start="58978" e_stop="58886"/>
            <exon e_start="58575" e_stop="58444"/>
            <exon e_start="57743" e_stop="57405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63406" e_stop="62635" e_length="772"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.983">
            <gDNA_intron_boundary i_start="62634" i_stop="62457" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62456" e_stop="62401" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.976">
            <gDNA_intron_boundary i_start="62400" i_stop="61882" i_length="519"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61881" e_stop="61772" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="61771" i_stop="61681" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61680" e_stop="61521" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61520" i_stop="58979" i_length="2542"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58978" e_stop="58886" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58885" i_stop="58576" i_length="310"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58575" e_stop="58444" e_length="132"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58443" i_stop="57744" i_length="700"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="57743" e_stop="57405" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63406" stop="62635"/>
              <exon start="62456" stop="62401"/>
              <exon start="61881" stop="61772"/>
              <exon start="61680" stop="61521"/>
              <exon start="58978" stop="58886"/>
              <exon start="58575" stop="58444"/>
              <exon start="57743" stop="57405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCTCTCTCTCTATACCATCTCTCTCTCACCTTCCAATTCCATCCGCTTCACTTCTCCAAAACGATGTTGTCACTACCACGTCATTTCTCGCCGAGTCTCCCCCTCCCCTTACCGTCGACGCCATCTCCGCCGCCGCCGCTTCCCCTTTCTTAAAAAGTTCTCCCCGGAAGACACTCCACCGTCCGATCAAAACCTCCACTTTGTCCTTACCGTCGATAATTTGCCTACCAAATCCTTCTACTCAATCAAGGACCTCATCCACTTGAAGCTCCGAGAATTCCTCCACTCAGGCCGAGCTGCCATTGAAGACTTGCAAACTCTCATCCGTATAGATACCGACGCCGGGAGAGTTTCCTTCTCCTGCACAAGGTCCACCGTTAAATTCCTAGCAACTCTACTAGTTTCAACTTTCCTACTTATTTTCACTCTTAGGGCTATTCTTAACCTAGTTCGGCGGATACCACTCAACACTGGAAACAACAACGTTGAATTAGTCTATAAGAGAGACCGTAGTTTAGGTGGAAGAGAAGTACTTGTTGCTAAAAATGAGACGCCTACGCTTGATAGGAAGAAACCAAATGTCTTGGATAGAGATGAAGGAAATAGTAATTGGGATTTGGATACTCCAATTAGCTTTTCCAGGAGGCGAAAGAAGAAGAGTTCTGTGGAGCAATTGCCTAAATGGTGGCCTGTTTCGACTTCTGGTTCCGATCAAGTTGGGACAGAGAATCAAGAAGAGTATCAGAGAATGGCCGATAGATTGATTCGAG : CCATCTTGGACAATAGAATGACGGGGAAGGACATTTTAGCGGATGATATAATTCAA : TTACGACGCATAGGGAGGATATCAAACGTGAAAGTTTCATTTGATACTGAGAATGCACGTGATACCCTTTTTCGCGTGGCAGTCGACTTTATTCTTAATTATTGTGAAAG : CACTGCAAGTCAGTCAGCTTTTGTTCTAATTGATGGTGAAGAAGCACAAAACTTTGTTGCTGGGCTTGCTGATAATGTTGGACTTGAGAGTACTCGGGCTGCAAGAATGGTGTCTGCAGCTGTTGCTGCACGCACTAGGTCAAGGTTCTTGCAAGCTTGG : GCCTTGGAAATACAGGGAAAGCATTCTGAAGCTGTGGTGGAACTGTTCAAAATATGTGTCATCCACCAGATATTTCCTCCTGAAGAGTTCTCG : CCTGAGATGGAGATGGTGGCTCGTGGACTTGAGAAACACTTAAAAGTAGACCAAAGGGAGTCCCTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTG : ATGTACATGAAGAGTAACATTGCTCATCAACAAGAAAACAAGTATACATAGATCACTAATTTATGCGTACAGGAATTGATTTTTAAAGATGAATAATGTTTTATGCTCAAAAAGACATTGGTGTACAAGTAGTACTGCCTGTATGCAATAACCTTACGAAATGCTTCAAGTGGATTATTGGATGTATCATGTAAAAGGTAATGTTATCTGCTAGAAGAAGGTCCAATGCACATCCTTCTTTGTTCTCTTAATTTCATCAGCATAGCTATGAAGTTGAACTTCTTTAGTAGTGATCTCAAAACAATGAAGCTTACATGCTGAGACCAGATATCTATACAT</gDNA_template>
            <first_frame> N  L  S  L  Y  T  I  S  L  S  P  S  N  S  I  R  F  T  S  P  K  R  C  C  H  Y  H  V  I  S  R  R  V  S  P  S  P  Y  R  R  R  H  L  R  R  R  R  F  P  F  L  K  K  F  S  P  E  D  T  P  P  S  D  Q  N  L  H  F  V  L  T  V  D  N  L  P  T  K  S  F  Y  S  I  K  D  L  I  H  L  K  L  R  E  F  L  H  S  G  R  A  A  I  E  D  L  Q  T  L  I  R  I  D  T  D  A  G  R  V  S  F  S  C  T  R  S  T  V  K  F  L  A  T  L  L  V  S  T  F  L  L  I  F  T  L  R  A  I  L  N  L  V  R  R  I  P  L  N  T  G  N  N  N  V  E  L  V  Y  K  R  D  R  S  L  G  G  R  E  V  L  V  A  K  N  E  T  P  T  L  D  R  K  K  P  N  V  L  D  R  D  E  G  N  S  N  W  D  L  D  T  P  I  S  F  S  R  R  R  K  K  K  S  S  V  E  Q  L  P  K  W  W  P  V  S  T  S  G  S  D  Q  V  G  T  E  N  Q  E  E  Y  Q  R  M  A  D  R  L  I  R   : A  I  L  D  N  R  M  T  G  K  D  I  L  A  D  D  I  I  Q  :  L  R  R  I  G  R  I  S  N  V  K  V  S  F  D  T  E  N  A  R  D  T  L  F  R  V  A  V  D  F  I  L  N  Y  C  E  S :   T  A  S  Q  S  A  F  V  L  I  D  G  E  E  A  Q  N  F  V  A  G  L  A  D  N  V  G  L  E  S  T  R  A  A  R  M  V  S  A  A  V  A  A  R  T  R  S  R  F  L  Q  A  W  :  A  L  E  I  Q  G  K  H  S  E  A  V  V  E  L  F  K  I  C  V  I  H  Q  I  F  P  P  E  E  F  S  :  P  E  M  E  M  V  A  R  G  L  E  K  H  L  K  V  D  Q  R  E  S  L  M  N  S  L  L  Q  V  C  G  D  E  T  R  R  S  V  A  E  A  L  G  L  :  M  Y  M  K  S  N  I  A  H  Q  Q  E  N  K  Y  T  *  I  T  N  L  C  V  Q  E  L  I  F  K  D  E  *  C  F  M  L  K  K  T  L  V  Y  K  *  Y  C  L  Y  A  I  T  L  R  N  A  S  S  G  L  L  D  V  S  C  K  R  *  C  Y  L  L  E  E  G  P  M  H  I  L  L  C  S  L  N  F  I  S  I  A  M  K  L  N  F  F  S  S  D  L  K  T  M  K  L  T  C  *  D  Q  I  S  I  H </first_frame>
            <second_frame>  T  S  L  S  I  P  S  L  S  H  L  P  I  P  S  A  S  L  L  Q  N  D  V  V  T  T  T  S  F  L  A  E  S  P  P  P  L  T  V  D  A  I  S  A  A  A  A  S  P  F  L  K  S  S  P  R  K  T  L  H  R  P  I  K  T  S  T  L  S  L  P  S  I  I  C  L  P  N  P  S  T  Q  S  R  T  S  S  T  *  S  S  E  N  S  S  T  Q  A  E  L  P  L  K  T  C  K  L  S  S  V  *  I  P  T  P  G  E  F  P  S  P  A  Q  G  P  P  L  N  S  *  Q  L  Y  *  F  Q  L  S  Y  L  F  S  L  L  G  L  F  L  T  *  F  G  G  Y  H  S  T  L  E  T  T  T  L  N  *  S  I  R  E  T  V  V  *  V  E  E  K  Y  L  L  L  K  M  R  R  L  R  L  I  G  R  N  Q  M  S  W  I  E  M  K  E  I  V  I  G  I  W  I  L  Q  L  A  F  P  G  G  E  R  R  R  V  L  W  S  N  C  L  N  G  G  L  F  R  L  L  V  P  I  K  L  G  Q  R  I  K  K  S  I  R  E  W  P  I  D  *  F  E  :  P  S  W  T  I  E  *  R  G  R  T  F  *  R  M  I  *  F  N :   Y  D  A  *  G  G  Y  Q  T  *  K  F  H  L  I  L  R  M  H  V  I  P  F  F  A  W  Q  S  T  L  F  L  I  I  V  K   : A  L  Q  V  S  Q  L  L  F  *  L  M  V  K  K  H  K  T  L  L  L  G  L  L  I  M  L  D  L  R  V  L  G  L  Q  E  W  C  L  Q  L  L  L  H  A  L  G  Q  G  S  C  K  L  G :   P  W  K  Y  R  E  S  I  L  K  L  W  W  N  C  S  K  Y  V  S  S  T  R  Y  F  L  L  K  S  S  R :   L  R  W  R  W  W  L  V  D  L  R  N  T  *  K  *  T  K  G  S  P  *  *  T  V  F  Y  K  C  V  V  M  R  P  G  E  V  W  L  K  L  W  V  * :   C  T  *  R  V  T  L  L  I  N  K  K  T  S  I  H  R  S  L  I  Y  A  Y  R  N  *  F  L  K  M  N  N  V  L  C  S  K  R  H  W  C  T  S  S  T  A  C  M  Q  *  P  Y  E  M  L  Q  V  D  Y  W  M  Y  H  V  K  G  N  V  I  C  *  K  K  V  Q  C  T  S  F  F  V  L  L  I  S  S  A  *  L  *  S  *  T  S  L  V  V  I  S  K  Q  *  S  L  H  A  E  T  R  Y  L  Y   </second_frame>
            <third_frame>   P  L  S  L  Y  H  L  S  L  T  F  Q  F  H  P  L  H  F  S  K  T  M  L  S  L  P  R  H  F  S  P  S  L  P  L  P  L  P  S  T  P  S  P  P  P  P  L  P  L  S  *  K  V  L  P  G  R  H  S  T  V  R  S  K  P  P  L  C  P  Y  R  R  *  F  A  Y  Q  I  L  L  L  N  Q  G  P  H  P  L  E  A  P  R  I  P  P  L  R  P  S  C  H  *  R  L  A  N  S  H  P  Y  R  Y  R  R  R  E  S  F  L  L  L  H  K  V  H  R  *  I  P  S  N  S  T  S  F  N  F  P  T  Y  F  H  S  *  G  Y  S  *  P  S  S  A  D  T  T  Q  H  W  K  Q  Q  R  *  I  S  L  *  E  R  P  *  F  R  W  K  R  S  T  C  C  *  K  *  D  A  Y  A  *  *  E  E  T  K  C  L  G  *  R  *  R  K  *  *  L  G  F  G  Y  S  N  *  L  F  Q  E  A  K  E  E  E  F  C  G  A  I  A  *  M  V  A  C  F  D  F  W  F  R  S  S  W  D  R  E  S  R  R  V  S  E  N  G  R  *  I  D  S  S :   H  L  G  Q  *  N  D  G  E  G  H  F  S  G  *  Y  N  S   : I  T  T  H  R  E  D  I  K  R  E  S  F  I  *  Y  *  E  C  T  *  Y  P  F  S  R  G  S  R  L  Y  S  *  L  L  *  K  :  H  C  K  S  V  S  F  C  S  N  *  W  *  R  S  T  K  L  C  C  W  A  C  *  *  C  W  T  *  E  Y  S  G  C  K  N  G  V  C  S  C  C  C  T  H  *  V  K  V  L  A  S  L   : G  L  G  N  T  G  K  A  F  *  S  C  G  G  T  V  Q  N  M  C  H  P  P  D  I  S  S  *  R  V  L   : A  *  D  G  D  G  G  S  W  T  *  E  T  L  K  S  R  P  K  G  V  P  D  E  Q  S  S  T  S  V  W  *  *  D  Q  E  K  C  G  *  S  F  G  S   : D  V  H  E  E  *  H  C  S  S  T  R  K  Q  V  Y  I  D  H  *  F  M  R  T  G  I  D  F  *  R  *  I  M  F  Y  A  Q  K  D  I  G  V  Q  V  V  L  P  V  C  N  N  L  T  K  C  F  K  W  I  I  G  C  I  M  *  K  V  M  L  S  A  R  R  R  S  N  A  H  P  S  L  F  S  *  F  H  Q  H  S  Y  E  V  E  L  L  *  *  *  S  Q  N  N  E  A  Y  M  L  R  P  D  I  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63406" stop="62635"/>
                    <exon start="62456" stop="62401"/>
                    <exon start="61881" stop="61772"/>
                    <exon start="61680" stop="61521"/>
                    <exon start="58978" stop="58886"/>
                    <exon start="58575" stop="58444"/>
                    <exon start="57743" stop="57693"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1371</number_coding_nucleotides>
                  <number_encoded_amino_acids>457</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSLYTISLSPSNSIRFTSPKRCCHYHVISRRVSPSPYRRRHLRRRRFPFLKKFSPEDTPPSDQNLHFVLTVDNLPTKSFYSIKDLIHLKLREFLHSGRAAIEDLQTLIRIDTDAGRVSFSCTRSTVKFLATLLVSTFLLIFTLRAILNLVRRIPLNTGNNNVELVYKRDRSLGGREVLVAKNETPTLDRKKPNVLDRDEGNSNWDLDTPISFSRRRKKKSSVEQLPKWWPVSTSGSDQVGTENQEEYQRMADRLIRAILDNRMTGKDILADDIIQLRRIGRISNVKVSFDTENARDTLFRVAVDFILNYCESTASQSAFVLIDGEEAQNFVAGLADNVGLESTRAARMVSAAVAARTRSRFLQAWALEIQGKHSEAVVELFKICVIHQIFPPEEFSPEMEMVARGLEKHLKVDQRESLMNSLLQVCGDETRRSVAEALGLMYMKSNIAHQQENKYT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58512" e_stop="57843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="58512" e_stop="57843" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58512" stop="57843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGAACAGTCTTCTACAAGTGTGTGGTGATGAGACCAGGAGAAGTGTGGCTGAAGCTTTGGGTCTGGTATGCCTAGTTTATTACTCCCCTTCCCTATCTAGAAGATCTGGAATTTGTTGTTCATTGTTGTTGTGCTTCTATTGAGTGACATTTCAATCGGAAGTGGCGTCTCCTGTCAACTTCGCTTGTTCTTGTGCTTTCTGAAAGAATTTTGCCCTTCAGCTGTGTAAAATAGATCTTAACCGACAGTGCGGAGAAGACAGAATTCTATCCTCAGTCTTGTACACTGTCTTGCTCCCATTTCTATTTGTTCTTTTCAAGCTCAAGTCACACAACAGGAGTTTGTTGAATGTTTCCTAAATCCTTAAATCAATACAGATTCCACCTTCACCTCTCCAACCTCTGGGAAGTTAACTTTTTTCTAATATCACTACTCTGGCAGTGTGAAGAAGTATCTTATTACCATGGATGTTATAAAATTGTTGGATTTTCTCTTTAGAATTTGTAGACAAATCTGAGCCAAGTCTAGCTAGGGCAGGGACAGTCTGGACTACTGATGCAATACTTATTGCAGAGGTTATCTGCTATTGTAATTGGTCGAGTTATCCTTTGAAATACAATATGGTCTTATTACCTTTGTGGTATTAAAAGTAACATTTATTTTCTA</gDNA_template>
            <first_frame> L  M  N  S  L  L  Q  V  C  G  D  E  T  R  R  S  V  A  E  A  L  G  L  V  C  L  V  Y  Y  S  P  S  L  S  R  R  S  G  I  C  C  S  L  L  L  C  F  Y  *  V  T  F  Q  S  E  V  A  S  P  V  N  F  A  C  S  C  A  F  *  K  N  F  A  L  Q  L  C  K  I  D  L  N  R  Q  C  G  E  D  R  I  L  S  S  V  L  Y  T  V  L  L  P  F  L  F  V  L  F  K  L  K  S  H  N  R  S  L  L  N  V  S  *  I  L  K  S  I  Q  I  P  P  S  P  L  Q  P  L  G  S  *  L  F  S  N  I  T  T  L  A  V  *  R  S  I  L  L  P  W  M  L  *  N  C  W  I  F  S  L  E  F  V  D  K  S  E  P  S  L  A  R  A  G  T  V  W  T  T  D  A  I  L  I  A  E  V  I  C  Y  C  N  W  S  S  Y  P  L  K  Y  N  M  V  L  L  P  L  W  Y  *  K  *  H  L  F  S  </first_frame>
            <second_frame>  *  *  T  V  F  Y  K  C  V  V  M  R  P  G  E  V  W  L  K  L  W  V  W  Y  A  *  F  I  T  P  L  P  Y  L  E  D  L  E  F  V  V  H  C  C  C  A  S  I  E  *  H  F  N  R  K  W  R  L  L  S  T  S  L  V  L  V  L  S  E  R  I  L  P  F  S  C  V  K  *  I  L  T  D  S  A  E  K  T  E  F  Y  P  Q  S  C  T  L  S  C  S  H  F  Y  L  F  F  S  S  S  S  H  T  T  G  V  C  *  M  F  P  K  S  L  N  Q  Y  R  F  H  L  H  L  S  N  L  W  E  V  N  F  F  L  I  S  L  L  W  Q  C  E  E  V  S  Y  Y  H  G  C  Y  K  I  V  G  F  S  L  *  N  L  *  T  N  L  S  Q  V  *  L  G  Q  G  Q  S  G  L  L  M  Q  Y  L  L  Q  R  L  S  A  I  V  I  G  R  V  I  L  *  N  T  I  W  S  Y  Y  L  C  G  I  K  S  N  I  Y  F  L </second_frame>
            <third_frame>   D  E  Q  S  S  T  S  V  W  *  *  D  Q  E  K  C  G  *  S  F  G  S  G  M  P  S  L  L  L  P  F  P  I  *  K  I  W  N  L  L  F  I  V  V  V  L  L  L  S  D  I  S  I  G  S  G  V  S  C  Q  L  R  L  F  L  C  F  L  K  E  F  C  P  S  A  V  *  N  R  S  *  P  T  V  R  R  R  Q  N  S  I  L  S  L  V  H  C  L  A  P  I  S  I  C  S  F  Q  A  Q  V  T  Q  Q  E  F  V  E  C  F  L  N  P  *  I  N  T  D  S  T  F  T  S  P  T  S  G  K  L  T  F  F  *  Y  H  Y  S  G  S  V  K  K  Y  L  I  T  M  D  V  I  K  L  L  D  F  L  F  R  I  C  R  Q  I  *  A  K  S  S  *  G  R  D  S  L  D  Y  *  C  N  T  Y  C  R  G  Y  L  L  L  *  L  V  E  L  S  F  E  I  Q  Y  G  L  I  T  F  V  V  L  K  V  T  F  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0058A04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="66240" PGL_stop="63504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66240" e_stop="66157"/>
            <exon e_start="65987" e_stop="65854"/>
            <exon e_start="65773" e_stop="65694"/>
            <exon e_start="64720" e_stop="64672"/>
            <exon e_start="64578" e_stop="64515"/>
            <exon e_start="63905" e_stop="63504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.604" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66240" e_stop="66157" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.604" acc_prob="0.989">
            <gDNA_intron_boundary i_start="66156" i_stop="65988" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65987" e_stop="65854" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.791">
            <gDNA_intron_boundary i_start="65853" i_stop="65774" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65773" e_stop="65694" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.881" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65693" i_stop="64721" i_length="973"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64720" e_stop="64672" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64671" i_stop="64579" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64578" e_stop="64515" e_length="64"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64514" i_stop="63906" i_length="609"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63905" e_stop="63504" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66240" stop="66157"/>
              <exon start="65987" stop="65854"/>
              <exon start="65773" stop="65694"/>
              <exon start="64720" stop="64672"/>
              <exon start="64578" stop="64515"/>
              <exon start="63905" stop="63504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGGCATTCGAAGGCAACCATGCTTCTAATTGTTAACAATGCAGCGCAAGGAATTCTGTCGTCCTTTTTTTTCAAATATGCTG : ATACAATTCTGAAGAAGTATTCTTCGACCGTTGCAACAATATTTACAGGCATAGCATCTGCTCTGCTGTTTGGTCATACACTGACCGTAAACTTTCTTCTTGGGATTTCTGTTGTTTTCATTTCAATGCATCAG : TTCTTTTCACCTCTTTCAAAAGTTAAAGATGATCAACAAAACGGGACAGTGGAGTTGATTGACGTCCGGGAGAACCATAG : CCCTAAAGATTCATCCTTTGTAAATATGGCAGCAGGAGCAAATGAGGAG : GCAAGTCATCGAGTAGGACCTGATGAAAGGCAGCCACTTCTTCCAAGATGAAGCTACTTGAACT : GTCATTTGTAGCAGCAGATATTGTGGTGGAGAGCATTTACAGTCATTCAGTGTAATATGGAGAAGAAACAGTGTTGTTGTAGTCTCTCTTTTCTTCTCTCTCCAAAATGTGCTTCATGGGATTGTTTCGCTTGGAGAGAAGGATATGTGGATGGAGAGGTTTTAGGTAGACAACAACAATAGAGTTGTTATGCAATACGAATACGAGCTGTTGTATTATAAGTTACAAACACATGAATTTTATTGTAAACAATTTAGAGTTATCAATTCTTTCATATATTCTTGTAATCAATTGAATTTTGATGATACACCCGTGGATGTGTTAGATTAAACATTTCTTTTTGTAATTTCAAGCAAATTGTACTTGAATGGTAATTCATTTCATATATCTTCTTCTTTATTC</gDNA_template>
            <first_frame> R  G  I  R  R  Q  P  C  F  *  L  L  T  M  Q  R  K  E  F  C  R  P  F  F  S  N  M  L  :  I  Q  F  *  R  S  I  L  R  P  L  Q  Q  Y  L  Q  A  *  H  L  L  C  C  L  V  I  H  *  P  *  T  F  F  L  G  F  L  L  F  S  F  Q  C  I  S :   S  F  H  L  F  Q  K  L  K  M  I  N  K  T  G  Q  W  S  *  L  T  S  G  R  T  I   : A  L  K  I  H  P  L  *  I  W  Q  Q  E  Q  M  R  R :   Q  V  I  E  *  D  L  M  K  G  S  H  F  F  Q  D  E  A  T  *  T  :  V  I  C  S  S  R  Y  C  G  G  E  H  L  Q  S  F  S  V  I  W  R  R  N  S  V  V  V  V  S  L  F  F  S  L  Q  N  V  L  H  G  I  V  S  L  G  E  K  D  M  W  M  E  R  F  *  V  D  N  N  N  R  V  V  M  Q  Y  E  Y  E  L  L  Y  Y  K  L  Q  T  H  E  F  Y  C  K  Q  F  R  V  I  N  S  F  I  Y  S  C  N  Q  L  N  F  D  D  T  P  V  D  V  L  D  *  T  F  L  F  V  I  S  S  K  L  Y  L  N  G  N  S  F  H  I  S  S  S  L  F </first_frame>
            <second_frame>  G  A  F  E  G  N  H  A  S  N  C  *  Q  C  S  A  R  N  S  V  V  L  F  F  Q  I  C  * :   Y  N  S  E  E  V  F  F  D  R  C  N  N  I  Y  R  H  S  I  C  S  A  V  W  S  Y  T  D  R  K  L  S  S  W  D  F  C  C  F  H  F  N  A  S   : V  L  F  T  S  F  K  S  *  R  *  S  T  K  R  D  S  G  V  D  *  R  P  G  E  P  *  :  P  *  R  F  I  L  C  K  Y  G  S  R  S  K  *  G   : G  K  S  S  S  R  T  *  *  K  A  A  T  S  S  K  M  K  L  L  E  L :   S  F  V  A  A  D  I  V  V  E  S  I  Y  S  H  S  V  *  Y  G  E  E  T  V  L  L  *  S  L  F  S  S  L  S  K  M  C  F  M  G  L  F  R  L  E  R  R  I  C  G  W  R  G  F  R  *  T  T  T  I  E  L  L  C  N  T  N  T  S  C  C  I  I  S  Y  K  H  M  N  F  I  V  N  N  L  E  L  S  I  L  S  Y  I  L  V  I  N  *  I  L  M  I  H  P  W  M  C  *  I  K  H  F  F  L  *  F  Q  A  N  C  T  *  M  V  I  H  F  I  Y  L  L  L  Y   </second_frame>
            <third_frame>   G  H  S  K  A  T  M  L  L  I  V  N  N  A  A  Q  G  I  L  S  S  F  F  F  K  Y  A   : D  T  I  L  K  K  Y  S  S  T  V  A  T  I  F  T  G  I  A  S  A  L  L  F  G  H  T  L  T  V  N  F  L  L  G  I  S  V  V  F  I  S  M  H  Q  :  F  F  S  P  L  S  K  V  K  D  D  Q  Q  N  G  T  V  E  L  I  D  V  R  E  N  H  S :   P  K  D  S  S  F  V  N  M  A  A  G  A  N  E  E  :  A  S  H  R  V  G  P  D  E  R  Q  P  L  L  P  R  *  S  Y  L  N   : C  H  L  *  Q  Q  I  L  W  W  R  A  F  T  V  I  Q  C  N  M  E  K  K  Q  C  C  C  S  L  S  F  L  L  S  P  K  C  A  S  W  D  C  F  A  W  R  E  G  Y  V  D  G  E  V  L  G  R  Q  Q  Q  *  S  C  Y  A  I  R  I  R  A  V  V  L  *  V  T  N  T  *  I  L  L  *  T  I  *  S  Y  Q  F  F  H  I  F  L  *  S  I  E  F  *  *  Y  T  R  G  C  V  R  L  N  I  S  F  C  N  F  K  Q  I  V  L  E  W  *  F  I  S  Y  I  F  F  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66238" stop="66157"/>
                    <exon start="65987" stop="65854"/>
                    <exon start="65773" stop="65694"/>
                    <exon start="64720" stop="64672"/>
                    <exon start="64578" stop="64528"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GHSKATMLLIVNNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASALLFGHTLTVNFLLGISVVFISMHQFFSPLSKVKDDQQNGTVELIDVRENHSPKDSSFVNMAAGANEEASHRVGPDERQPLLPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="77743" PGL_stop="66864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77743" e_stop="77562"/>
            <exon e_start="76889" e_stop="76694"/>
            <exon e_start="76357" e_stop="76241"/>
            <exon e_start="76157" e_stop="76101"/>
            <exon e_start="70802" e_stop="70725"/>
            <exon e_start="69799" e_stop="69755"/>
            <exon e_start="68113" e_stop="68054"/>
            <exon e_start="67917" e_stop="67795"/>
            <exon e_start="67657" e_stop="67580"/>
            <exon e_start="66931" e_stop="66917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.967" e_score="0.974"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.211" e_score="0.974"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77743" e_stop="77562" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77561" i_stop="76890" i_length="672"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="76889" e_stop="76694" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.920" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76357" e_stop="76241" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76157" e_stop="76101" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.862" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76100" i_stop="70803" i_length="5298"/>
          </intron>
          <exon e_serial="5" e_score="0.974">
            <gDNA_exon_boundary e_start="70802" e_stop="70725" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.967">
            <gDNA_intron_boundary i_start="70724" i_stop="69800" i_length="925"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69799" e_stop="69755" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69754" i_stop="68114" i_length="1641"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68113" e_stop="68054" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.948" acc_prob="0.606">
            <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67917" e_stop="67795" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="0.911" acc_prob="0.947">
            <gDNA_intron_boundary i_start="67794" i_stop="67658" i_length="137"/>
          </intron>
          <exon e_serial="9" e_score="0.974">
            <gDNA_exon_boundary e_start="67657" e_stop="67580" e_length="78"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.211">
            <gDNA_intron_boundary i_start="67579" i_stop="66932" i_length="648"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="66931" e_stop="66917" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77743" stop="77562"/>
              <exon start="76889" stop="76694"/>
              <exon start="76357" stop="76241"/>
              <exon start="76157" stop="76101"/>
              <exon start="70802" stop="70725"/>
              <exon start="69799" stop="69755"/>
              <exon start="68113" stop="68054"/>
              <exon start="67917" stop="67795"/>
              <exon start="67657" stop="67580"/>
              <exon start="66931" stop="66917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGAAGGAGCCCTTTTACAACTCTTAATACAACCAAACAAACTCTTTCACAATTCCCTTCCTAAATCTCCAAATTTCAACTTTCACTCCACTCGTCTCAGCTCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAG : GTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG : CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG : GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG : GCTGCAAGAAACAATGTCCTTCTTGCTGTACCAGCACTACTCTATGCCATAAACAACTACCTAAAGTTCATCATGCAG : TTATATTTCAATCCAGCAACAGTGAAGATGCTAAGCAATCTGAAG : GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG : TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTT : GTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAG : AACTTATTTCTCTAT</gDNA_template>
            <first_frame> S  E  G  A  L  L  Q  L  L  I  Q  P  N  K  L  F  H  N  S  L  P  K  S  P  N  F  N  F  H  S  T  R  L  S  S  T  P  S  V  G  R  *  A  G  L  I  W  I  W  P  E  Y  L  S  S  R  Q  F  S  H  R :   *  A  E  I  L  S  S  *  L  M  K  N  G  M  A  E  C  A  V  C  H  S  K  L  V  S  P  S  V  K  T  I  S  R  A  Y  D  R  H  R  S  K  I  S  S  K  Q  R  A  L  N  V  L  L  V  V  G  D  C  M  L  V  G  L  Q  :  P  V  L  V  F  M  S  K  V  D  G  K  F  K  F  S  P  V  S  V  N  F  L  T  E  A  T  K  V  V  F  A  I  I  M  L  L  I  Q  :  A  R  H  Q  K  V  G  E  K  P  L  L  S  I  S  T  F  V  Q  :  A  A  R  N  N  V  L  L  A  V  P  A  L  L  Y  A  I  N  N  Y  L  K  F  I  M  Q  :  L  Y  F  N  P  A  T  V  K  M  L  S  N  L  K  :  V  L  V  I  A  V  L  L  K  F  I  M  K  R  R  F  S  V  I  Q  :  W  E  A  L  A  L  L  L  I  G  I  S  I  N  Q  L  R  S  L  P  E  G  T  T  S  L  A  L  P  V  T  T  I  A  Y  I  Y  T  L  I  F  :  V  T  V  P  S  M  A  S  V  F  N  E  Y  A  L  K  S  Q  Y  D  T  S  I  Y  L  Q  :  N  L  F  L  Y </first_frame>
            <second_frame>  V  K  E  P  F  Y  N  S  *  Y  N  Q  T  N  S  F  T  I  P  F  L  N  L  Q  I  S  T  F  T  P  L  V  S  A  Q  L  H  P  S  V  G  E  P  D  L  S  G  S  G  R  N  I  C  L  P  A  N  S  L  T   : G  E  L  K  Y  *  A  V  D  S  *  R  T  V  W  Q  N  A  L  S  V  I  P  S  L  F  L  H  L  *  K  L  F  Q  G  H  M  I  D  T  E  A  R  F  H  Q  S  N  V  L  S  M  S  Y  W  L  *  E  I  V  C  W  L  V  Y  S :   L  F  W  Y  L  C  R  K  W  M  E  N  S  S  L  V  P  *  V  S  T  S  *  Q  R  R  Q  K  S  S  L  Q  *  *  C  F  *  S  R :   P  G  I  K  R  L  E  K  S  H  F  F  Q  Y  P  H  L  S  R :   L  Q  E  T  M  S  F  L  L  Y  Q  H  Y  S  M  P  *  T  T  T  *  S  S  S  C  S :   Y  I  S  I  Q  Q  Q  *  R  C  *  A  I  *  R :   F  W  L  L  Q  C  C  *  N  L  S  *  K  G  D  F  P  *  F  S :   G  R  L  L  L  C  C  *  L  G  *  A  L  I  N  F  D  P  F  L  K  A  P  L  L  W  L  F  Q  L  P  Q  L  P  T  S  I  H  *  F  L :   *  L  C  L  L  W  P  Q  Y  S  M  S  M  L  *  R  V  N  M  T  L  A  Y  I  S  R :   T  Y  F  S   </second_frame>
            <third_frame>   *  R  S  P  F  T  T  L  N  T  T  K  Q  T  L  S  Q  F  P  S  *  I  S  K  F  Q  L  S  L  H  S  S  Q  L  N  S  I  R  R  S  V  S  R  T  Y  L  D  L  A  G  I  F  V  F  P  P  I  L  S  Q  :  V  S  *  N  T  K  Q  L  T  H  E  E  R  Y  G  R  M  R  C  L  S  F  Q  A  C  F  S  I  C  E  N  Y  F  K  G  I  *  S  T  Q  K  Q  D  F  I  K  A  T  C  S  Q  C  P  I  G  C  R  R  L  Y  A  G  W  F  T   : A  C  F  G  I  Y  V  E  S  G  W  K  I  Q  V  *  S  R  K  C  Q  L  L  D  R  G  D  K  S  R  L  C  N  N  N  A  F  N  P   : G  Q  A  S  K  G  W  R  K  A  T  S  F  N  I  H  I  C  P   : G  C  K  K  Q  C  P  S  C  C  T  S  T  T  L  C  H  K  Q  L  P  K  V  H  H  A   : V  I  F  Q  S  S  N  S  E  D  A  K  Q  S  E   : G  F  G  Y  C  S  A  V  E  I  Y  H  E  K  A  I  F  R  N  S   : V  G  G  S  C  F  A  A  N  W  D  K  H  *  S  T  S  I  P  S  *  R  H  H  F  F  G  S  S  S  Y  H  N  C  L  H  L  Y  T  D  F   : C  N  C  A  F  Y  G  L  S  I  Q  *  V  C  F  E  E  S  I  *  H  *  H  I  S  P   : E  L  I  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76864" stop="76694"/>
                    <exon start="76357" stop="76241"/>
                    <exon start="76157" stop="76101"/>
                    <exon start="70802" stop="70725"/>
                    <exon start="69799" stop="69755"/>
                    <exon start="68113" stop="68054"/>
                    <exon start="67917" stop="67795"/>
                    <exon start="67657" stop="67580"/>
                    <exon start="66931" stop="66917"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMKNGMAECAVCHSKLVSPSVKTISRAYDRHRSKISSKQRALNVLLVVGDCMLVGLQPVLVFMSKVDGKFKFSPVSVNFLTEATKVVFAIIMLLIQARHQKVGEKPLLSISTFVQAARNNVLLAVPALLYAINNYLKFIMQLYFNPATVKMLSNLKVLVIAVLLKFIMKRRFSVIQWEALALLLIGISINQLRSLPEGTTSLALPVTTIAYIYTLIFVTVPSMASVFNEYALKSQYDTSIYLQNLFLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77641" e_stop="77313"/>
            <exon e_start="76889" e_stop="76694"/>
            <exon e_start="76357" e_stop="76241"/>
            <exon e_start="76157" e_stop="76101"/>
            <exon e_start="68113" e_stop="68054"/>
            <exon e_start="67917" e_stop="67795"/>
            <exon e_start="67657" e_stop="67580"/>
            <exon e_start="66931" e_stop="66864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.992" e_score="0.997"/>
          <exon-intron don_prob="0.920" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.211" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="77641" e_stop="77313" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.992">
            <gDNA_intron_boundary i_start="77312" i_stop="76890" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76889" e_stop="76694" e_length="196"/>
          </exon>
          <intron i_serial="2" don_prob="0.920" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76693" i_stop="76358" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76357" e_stop="76241" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76240" i_stop="76158" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76157" e_stop="76101" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.862" acc_prob="0.997">
            <gDNA_intron_boundary i_start="76100" i_stop="68114" i_length="7987"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68113" e_stop="68054" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.948" acc_prob="0.606">
            <gDNA_intron_boundary i_start="68053" i_stop="67918" i_length="136"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67917" e_stop="67795" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.911" acc_prob="0.947">
            <gDNA_intron_boundary i_start="67794" i_stop="67658" i_length="137"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67657" e_stop="67580" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.211">
            <gDNA_intron_boundary i_start="67579" i_stop="66932" i_length="648"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66931" e_stop="66864" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77641" stop="77313"/>
              <exon start="76889" stop="76694"/>
              <exon start="76357" stop="76241"/>
              <exon start="76157" stop="76101"/>
              <exon start="68113" stop="68054"/>
              <exon start="67917" stop="67795"/>
              <exon start="67657" stop="67580"/>
              <exon start="66931" stop="66864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322247" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAACTCCATCCGTCGGTCGGTGAGCCGGACTTATCTGGATCTGGCCGGAATATTTGTCTTCCCGCCAATTCTCTCACAGGTCACTTCTTCTCTTTTTGCTTATGTTTAATGTTAAAATAAGTTTGATATGTAGATCTATTTCATGTATGGATGCTTGATCCCTCTCAAATTCAATACTATCTGTTGTTATCATGCAAAAAGATTTCATTTTTTTATCCCTTGGATAGTGAGATCTGCGCTTTCTAAATTTCGCATTTTCATCATCTTTGGGACAAGTGAAGTCAGGACTTATTCAGCTGCAGCTGCACTAAGAGTTCACAAAGAACAA : GTGAGCTGAAATACTAAGCAGTTGACTCATGAAGAACGGTATGGCAGAATGCGCTGTCTGTCATTCCAAGCTTGTTTCTCCATCTGTGAAAACTATTTCAAGGGCATATGATCGACACAGAAGCAAGATTTCATCAAAGCAACGTGCTCTCAATGTCCTATTGGTTGTAGGAGATTGTATGCTGGTTGGTTTACAG : CCTGTTTTGGTATTTATGTCGAAAGTGGATGGAAAATTCAAGTTTAGTCCCGTAAGTGTCAACTTCTTGACAGAGGCGACAAAAGTCGTCTTTGCAATAATAATGCTTTTAATCCAG : GCCAGGCATCAAAAGGTTGGAGAAAAGCCACTTCTTTCAATATCCACATTTGTCCAG : GTTTTGGTTATTGCAGTGCTGTTGAAATTTATCATGAAAAGGCGATTTTCCGTAATTCAG : TGGGAGGCTCTTGCTTTGCTGCTAATTGGGATAAGCATTAATCAACTTCGATCCCTTCCTGAAGGCACCACTTCTTTGGCTCTTCCAGTTACCACAATTGCCTACATCTATACACTGATTTTT : GTAACTGTGCCTTCTATGGCCTCAGTATTCAATGAGTATGCTTTGAAGAGTCAATATGACACTAGCATATATCTCCAG : AACTTATTTCTCTATGGTTATGGTGCTATATTCAACTTTCTAGCCATTCTTGGGATTGCTGTATTTAA</gDNA_template>
            <first_frame> S  T  P  S  V  G  R  *  A  G  L  I  W  I  W  P  E  Y  L  S  S  R  Q  F  S  H  R  S  L  L  L  F  L  L  M  F  N  V  K  I  S  L  I  C  R  S  I  S  C  M  D  A  *  S  L  S  N  S  I  L  S  V  V  I  M  Q  K  D  F  I  F  L  S  L  G  *  *  D  L  R  F  L  N  F  A  F  S  S  S  L  G  Q  V  K  S  G  L  I  Q  L  Q  L  H  *  E  F  T  K  N  K :   *  A  E  I  L  S  S  *  L  M  K  N  G  M  A  E  C  A  V  C  H  S  K  L  V  S  P  S  V  K  T  I  S  R  A  Y  D  R  H  R  S  K  I  S  S  K  Q  R  A  L  N  V  L  L  V  V  G  D  C  M  L  V  G  L  Q  :  P  V  L  V  F  M  S  K  V  D  G  K  F  K  F  S  P  V  S  V  N  F  L  T  E  A  T  K  V  V  F  A  I  I  M  L  L  I  Q  :  A  R  H  Q  K  V  G  E  K  P  L  L  S  I  S  T  F  V  Q  :  V  L  V  I  A  V  L  L  K  F  I  M  K  R  R  F  S  V  I  Q  :  W  E  A  L  A  L  L  L  I  G  I  S  I  N  Q  L  R  S  L  P  E  G  T  T  S  L  A  L  P  V  T  T  I  A  Y  I  Y  T  L  I  F  :  V  T  V  P  S  M  A  S  V  F  N  E  Y  A  L  K  S  Q  Y  D  T  S  I  Y  L  Q  :  N  L  F  L  Y  G  Y  G  A  I  F  N  F  L  A  I  L  G  I  A  V  F   </first_frame>
            <second_frame>  Q  L  H  P  S  V  G  E  P  D  L  S  G  S  G  R  N  I  C  L  P  A  N  S  L  T  G  H  F  F  S  F  C  L  C  L  M  L  K  *  V  *  Y  V  D  L  F  H  V  W  M  L  D  P  S  Q  I  Q  Y  Y  L  L  L  S  C  K  K  I  S  F  F  Y  P  L  D  S  E  I  C  A  F  *  I  S  H  F  H  H  L  W  D  K  *  S  Q  D  L  F  S  C  S  C  T  K  S  S  Q  R  T   : S  E  L  K  Y  *  A  V  D  S  *  R  T  V  W  Q  N  A  L  S  V  I  P  S  L  F  L  H  L  *  K  L  F  Q  G  H  M  I  D  T  E  A  R  F  H  Q  S  N  V  L  S  M  S  Y  W  L  *  E  I  V  C  W  L  V  Y  S :   L  F  W  Y  L  C  R  K  W  M  E  N  S  S  L  V  P  *  V  S  T  S  *  Q  R  R  Q  K  S  S  L  Q  *  *  C  F  *  S  R :   P  G  I  K  R  L  E  K  S  H  F  F  Q  Y  P  H  L  S  R :   F  W  L  L  Q  C  C  *  N  L  S  *  K  G  D  F  P  *  F  S :   G  R  L  L  L  C  C  *  L  G  *  A  L  I  N  F  D  P  F  L  K  A  P  L  L  W  L  F  Q  L  P  Q  L  P  T  S  I  H  *  F  L :   *  L  C  L  L  W  P  Q  Y  S  M  S  M  L  *  R  V  N  M  T  L  A  Y  I  S  R :   T  Y  F  S  M  V  M  V  L  Y  S  T  F  *  P  F  L  G  L  L  Y  L  </second_frame>
            <third_frame>   N  S  I  R  R  S  V  S  R  T  Y  L  D  L  A  G  I  F  V  F  P  P  I  L  S  Q  V  T  S  S  L  F  A  Y  V  *  C  *  N  K  F  D  M  *  I  Y  F  M  Y  G  C  L  I  P  L  K  F  N  T  I  C  C  Y  H  A  K  R  F  H  F  F  I  P  W  I  V  R  S  A  L  S  K  F  R  I  F  I  I  F  G  T  S  E  V  R  T  Y  S  A  A  A  A  L  R  V  H  K  E  Q  :  V  S  *  N  T  K  Q  L  T  H  E  E  R  Y  G  R  M  R  C  L  S  F  Q  A  C  F  S  I  C  E  N  Y  F  K  G  I  *  S  T  Q  K  Q  D  F  I  K  A  T  C  S  Q  C  P  I  G  C  R  R  L  Y  A  G  W  F  T   : A  C  F  G  I  Y  V  E  S  G  W  K  I  Q  V  *  S  R  K  C  Q  L  L  D  R  G  D  K  S  R  L  C  N  N  N  A  F  N  P   : G  Q  A  S  K  G  W  R  K  A  T  S  F  N  I  H  I  C  P   : G  F  G  Y  C  S  A  V  E  I  Y  H  E  K  A  I  F  R  N  S   : V  G  G  S  C  F  A  A  N  W  D  K  H  *  S  T  S  I  P  S  *  R  H  H  F  F  G  S  S  S  Y  H  N  C  L  H  L  Y  T  D  F   : C  N  C  A  F  Y  G  L  S  I  Q  *  V  C  F  E  E  S  I  *  H  *  H  I  S  P   : E  L  I  S  L  W  L  W  C  Y  I  Q  L  S  S  H  S  W  D  C  C  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76864" stop="76694"/>
                    <exon start="76357" stop="76241"/>
                    <exon start="76157" stop="76101"/>
                    <exon start="68113" stop="68054"/>
                    <exon start="67917" stop="67795"/>
                    <exon start="67657" stop="67580"/>
                    <exon start="66931" stop="66866"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMKNGMAECAVCHSKLVSPSVKTISRAYDRHRSKISSKQRALNVLLVVGDCMLVGLQPVLVFMSKVDGKFKFSPVSVNFLTEATKVVFAIIMLLIQARHQKVGEKPLLSISTFVQVLVIAVLLKFIMKRRFSVIQWEALALLLIGISINQLRSLPEGTTSLALPVTTIAYIYTLIFVTVPSMASVFNEYALKSQYDTSIYLQNLFLYGYGAIFNFLAILGIAVF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77507" stop="77313"/>
                    <exon start="76889" stop="76881"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYFMYGCLIPLKFNTICCYHAKRFHFFIPWIVRSALSKFRIFIIFGTSEVRTYSAAAALRVHKEQVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="82673" PGL_stop="82047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82673" e_stop="82550"/>
            <exon e_start="82213" e_stop="82047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.960"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="82673" e_stop="82550" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="82549" i_stop="82214" i_length="336"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="82213" e_stop="82047" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82673" stop="82550"/>
              <exon start="82213" stop="82047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346700" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGCGGAGGAGACTTGTAGTAATAAGGTGGAGGTGGTGATGGTGAAGGTGGTGGAGGTGACTTGTAGTAATAAGGTGGAGGTGGTG : AGGGAGAAGGAGGTGGTGGGGACTTGTAGACGTATGGTGGTGGTGGAGAAGGTGATGGTGGTGGTGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGGCGGGGACTTGTACACGTACGGTGGTGGAGGAGAGGGAGAAGGAGGTGGCGGGGAC</gDNA_template>
            <first_frame> D  L  *  *  *  G  G  G  G  D  G  E  G  G  G  G  D  L  *  *  *  G  G  G  G  D  G  E  G  G  G  G  D  L  *  *  *  G  G  G  G   : E  G  E  G  G  G  G  D  L  *  T  Y  G  G  G  G  E  G  D  G  G  G  G  D  L  Y  T  Y  G  G  G  G  E  G  E  G  G  G  G  D  L  Y  T  Y  G  G  G  G  E  G  E  G  G  G  G  D </first_frame>
            <second_frame>  T  C  S  N  K  V  E  V  V  M  V  K  V  A  E  E  T  C  S  N  K  V  E  V  V  M  V  K  V  V  E  V  T  C  S  N  K  V  E  V  V  :  R  E  K  E  V  V  G  T  C  R  R  M  V  V  V  E  K  V  M  V  V  V  G  T  C  T  R  T  V  V  E  E  R  E  K  E  V  A  G  T  C  T  R  T  V  V  E  E  R  E  K  E  V  A  G   </second_frame>
            <third_frame>   L  V  V  I  R  W  R  W  *  W  *  R  W  R  R  R  L  V  V  I  R  W  R  W  *  W  *  R  W  W  R  *  L  V  V  I  R  W  R  W  * :   G  R  R  R  W  W  G  L  V  D  V  W  W  W  W  R  R  *  W  W  W  W  G  L  V  H  V  R  W  W  R  R  G  R  R  R  W  R  G  L  V  H  V  R  W  W  R  R  G  R  R  R  W  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82672" stop="82550"/>
                    <exon start="82213" stop="82049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCSNKVEVVMVKVAEETCSNKVEVVMVKVVEVTCSNKVEVVREKEVVGTCRRMVVVEKVMVVVGTCTRTVVEEREKEVAGTCTRTVVEEREKEVAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="87200" PGL_stop="86201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87200" e_stop="86862"/>
            <exon e_start="86778" e_stop="86384"/>
            <exon e_start="86216" e_stop="86201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.963" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.254" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="87200" e_stop="86862" e_length="339"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.963">
            <gDNA_intron_boundary i_start="86861" i_stop="86779" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86778" e_stop="86384" e_length="395"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.254">
            <gDNA_intron_boundary i_start="86383" i_stop="86217" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="86216" e_stop="86201" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87200" stop="86862"/>
              <exon start="86778" stop="86384"/>
              <exon start="86216" stop="86201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATCACCTCCACCTCCCTATTACTACAAGTCTCCTCCACCACCATCGCCATCTCCTCCTCCACCATACTACTACAAGTCCCCACCACCACCATCACCGTCTCCTCCTCCACCATACTACTACAAATCACCACCACCCCCATCACCATCACCACCCCCTCCCTACTACTATCACTCTCCACCTCCACCCGTGAAGTCTCCTCCTCCTCCATACTACTACAGCTCACCTCCCCCACCCGTAAAATCACCTCCTCCTCCAGTATACATCTATGGTTCTCCGCCACCACCAGTCCACTACTAAGCAGTTGGAAAAGCTTGGCCATTTTCCACAACCACTCAA : ATTTCAGTTTCAGTCACAAAATAAGTGATGGGTTCTTGAGGAGAAGATTAATAGTTCCATGTTCAAATGCAATTAATAAGATGTTCAACTTTGCAATTGAGAGGTTGATTCCTAGTGACTTGGACCACTTTGCTTCTGCTTCTCTGGTTTCCTTATTACACATTGTTCTCTGTGTGTCTTCACGTGGAAAGTGGCTTAAATAGTTGGAAATAGTAATTATACATCATCTAGTGTACAATTTCATATGTTGCTTCTTTATAGTAATAATAATTTATTATTATTATATGTATAGGCTTTGTAATTTGATTCGTTTTGCTCTTAATTATTGTTGGCCGTCTCCTAGTGCCTACTTGTGCTTTTGTGCACCAAATCAATAAAGAGATGAATTTTGTTCA : AAAATTAAATAAGAAA</gDNA_template>
            <first_frame> P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  K  S  P  P  P  P  S  P  S  P  P  P  P  Y  Y  Y  H  S  P  P  P  P  V  K  S  P  P  P  P  Y  Y  Y  S  S  P  P  P  P  V  K  S  P  P  P  P  V  Y  I  Y  G  S  P  P  P  P  V  H  Y  *  A  V  G  K  A  W  P  F  S  T  T  T  Q  :  I  S  V  S  V  T  K  *  V  M  G  S  *  G  E  D  *  *  F  H  V  Q  M  Q  L  I  R  C  S  T  L  Q  L  R  G  *  F  L  V  T  W  T  T  L  L  L  L  L  W  F  P  Y  Y  T  L  F  S  V  C  L  H  V  E  S  G  L  N  S  W  K  *  *  L  Y  I  I  *  C  T  I  S  Y  V  A  S  L  *  *  *  *  F  I  I  I  I  C  I  G  F  V  I  *  F  V  L  L  L  I  I  V  G  R  L  L  V  P  T  C  A  F  V  H  Q  I  N  K  E  M  N  F  V  Q :   K  L  N  K  K </first_frame>
            <second_frame>  H  H  L  H  L  P  I  T  T  S  L  L  H  H  H  R  H  L  L  L  H  H  T  T  T  S  P  H  H  H  H  H  R  L  L  L  H  H  T  T  T  N  H  H  H  P  H  H  H  H  H  P  L  P  T  T  I  T  L  H  L  H  P  *  S  L  L  L  L  H  T  T  T  A  H  L  P  H  P  *  N  H  L  L  L  Q  Y  T  S  M  V  L  R  H  H  Q  S  T  T  K  Q  L  E  K  L  G  H  F  P  Q  P  L  K :   F  Q  F  Q  S  Q  N  K  *  W  V  L  E  E  K  I  N  S  S  M  F  K  C  N  *  *  D  V  Q  L  C  N  *  E  V  D  S  *  *  L  G  P  L  C  F  C  F  S  G  F  L  I  T  H  C  S  L  C  V  F  T  W  K  V  A  *  I  V  G  N  S  N  Y  T  S  S  S  V  Q  F  H  M  L  L  L  Y  S  N  N  N  L  L  L  L  Y  V  *  A  L  *  F  D  S  F  C  S  *  L  L  L  A  V  S  *  C  L  L  V  L  L  C  T  K  S  I  K  R  *  I  L  F   : K  N  *  I  R   </second_frame>
            <third_frame>   I  T  S  T  S  L  L  L  Q  V  S  S  T  T  I  A  I  S  S  S  T  I  L  L  Q  V  P  T  T  T  I  T  V  S  S  S  T  I  L  L  Q  I  T  T  T  P  I  T  I  T  T  P  S  L  L  L  S  L  S  T  S  T  R  E  V  S  S  S  S  I  L  L  Q  L  T  S  P  T  R  K  I  T  S  S  S  S  I  H  L  W  F  S  A  T  T  S  P  L  L  S  S  W  K  S  L  A  I  F  H  N  H  S   : N  F  S  F  S  H  K  I  S  D  G  F  L  R  R  R  L  I  V  P  C  S  N  A  I  N  K  M  F  N  F  A  I  E  R  L  I  P  S  D  L  D  H  F  A  S  A  S  L  V  S  L  L  H  I  V  L  C  V  S  S  R  G  K  W  L  K  *  L  E  I  V  I  I  H  H  L  V  Y  N  F  I  C  C  F  F  I  V  I  I  I  Y  Y  Y  Y  M  Y  R  L  C  N  L  I  R  F  A  L  N  Y  C  W  P  S  P  S  A  Y  L  C  F  C  A  P  N  Q  *  R  D  E  F  C  S  :  K  I  K  *  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87198" stop="86862"/>
                    <exon start="86778" stop="86576"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITSTSLLLQVSSTTIAISSSTILLQVPTTTITVSSSTILLQITTTPITITTPSLLLSLSTSTREVSSSSILLQLTSPTRKITSSSSIHLWFSATTSPLLSSWKSLAIFHNHSNFSFSHKISDGFLRRRLIVPCSNAINKMFNFAIERLIPSDLDHFASASLVSLLHIVLCVSSRGKWLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="92753" PGL_stop="88016"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92753" e_stop="92654"/>
            <exon e_start="92306" e_stop="92232"/>
            <exon e_start="92101" e_stop="92010"/>
            <exon e_start="91941" e_stop="91867"/>
            <exon e_start="89250" e_stop="89153"/>
            <exon e_start="89054" e_stop="88979"/>
            <exon e_start="88248" e_stop="88016"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.433" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.696" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.874" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92753" e_stop="92654" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="92653" i_stop="92307" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92306" e_stop="92232" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.883">
            <gDNA_intron_boundary i_start="92231" i_stop="92102" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92101" e_stop="92010" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.883">
            <gDNA_intron_boundary i_start="92009" i_stop="91942" i_length="68"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91941" e_stop="91867" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.433" acc_prob="0.680">
            <gDNA_intron_boundary i_start="91866" i_stop="89251" i_length="2616"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89250" e_stop="89153" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.696">
            <gDNA_intron_boundary i_start="89152" i_stop="89055" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="89054" e_stop="88979" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.878" acc_prob="0.874">
            <gDNA_intron_boundary i_start="88978" i_stop="88249" i_length="730"/>
          </intron>
          <exon e_serial="7" e_score="0.974">
            <gDNA_exon_boundary e_start="88248" e_stop="88016" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92753" stop="92654"/>
              <exon start="92306" stop="92232"/>
              <exon start="92101" stop="92010"/>
              <exon start="91941" stop="91867"/>
              <exon start="89250" stop="89153"/>
              <exon start="89054" stop="88979"/>
              <exon start="88248" stop="88016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGCTTAGAAAAGAAGAAAAACAAGAGTAAGAGCGCAGCTGAATATCATTTGCGGGGAACCCATCTGAATTGTTGAGAGAAGGTGGTGAATCTAAGTG : GAAGATATTGCAACTCTGATTTCAGAAAGAGACACACTAGCAGCGAGATGACATATGAATTAGATGAACAAAAAA : AGGTTGGGTTAGGTCTCATTGGATTTGGCATCTTTTTCACTTTTCTTGCCATAATGTTGTTCTTCGACAGGGGTTTGCTTGCGCTGGCAAAT : ATACTTTTGTTAGCAGGTGTAGCACTTCTGTTGGGTTTGCGTTCTACATTACAGCTCTTCAAAGTAAACTACAAG : GGCACAATATCATTTATGCTTGGGCTCTTTCTCATATTTGTTCGCTGGCCAGTTGTGGGTATCATTGTGGAAATATATGGATGCATTATTCTCTTCGG : TTGTTTCTGGCCATCCATCAAGGTTTTTCTTTTCCAGATTCCTGTATTTGGATGGATTCTGCAGTATCCTGCCCTG : CTTCTTGACCGCTTTCGTAGCTGACTGACTGATTTGTCTACTCCAGTTATCCTGTTTGTAAAAGAGGAAGAATATACTGAGCTAGGGTTGTTTGTCATGTGATGCAGATTGCTGTCACCTTTATCTTCAAATGTATATTAGATGTTGATTAGGATTATAATAATCATCAGTTCTGAAGTAGCAAATCTTGTTATCAAGTTTTCTTATACTATCCTATCCCCTGTTTTCTCTAC</gDNA_template>
            <first_frame> L  C  L  E  K  K  K  N  K  S  K  S  A  A  E  Y  H  L  R  G  T  H  L  N  C  *  E  K  V  V  N  L  S   : G  R  Y  C  N  S  D  F  R  K  R  H  T  S  S  E  M  T  Y  E  L  D  E  Q  K   : K  V  G  L  G  L  I  G  F  G  I  F  F  T  F  L  A  I  M  L  F  F  D  R  G  L  L  A  L  A  N  :  I  L  L  L  A  G  V  A  L  L  L  G  L  R  S  T  L  Q  L  F  K  V  N  Y  K  :  G  T  I  S  F  M  L  G  L  F  L  I  F  V  R  W  P  V  V  G  I  I  V  E  I  Y  G  C  I  I  L  F  G :   C  F  W  P  S  I  K  V  F  L  F  Q  I  P  V  F  G  W  I  L  Q  Y  P  A  L  :  L  L  D  R  F  R  S  *  L  T  D  L  S  T  P  V  I  L  F  V  K  E  E  E  Y  T  E  L  G  L  F  V  M  *  C  R  L  L  S  P  L  S  S  N  V  Y  *  M  L  I  R  I  I  I  I  I  S  S  E  V  A  N  L  V  I  K  F  S  Y  T  I  L  S  P  V  F  S   </first_frame>
            <second_frame>  C  A  *  K  R  R  K  T  R  V  R  A  Q  L  N  I  I  C  G  E  P  I  *  I  V  E  R  R  W  *  I  *  V  :  E  D  I  A  T  L  I  S  E  R  D  T  L  A  A  R  *  H  M  N  *  M  N  K  K  :  R  L  G  *  V  S  L  D  L  A  S  F  S  L  F  L  P  *  C  C  S  S  T  G  V  C  L  R  W  Q  I :   Y  F  C  *  Q  V  *  H  F  C  W  V  C  V  L  H  Y  S  S  S  K  *  T  T  R :   A  Q  Y  H  L  C  L  G  S  F  S  Y  L  F  A  G  Q  L  W  V  S  L  W  K  Y  M  D  A  L  F  S  S   : V  V  S  G  H  P  S  R  F  F  F  S  R  F  L  Y  L  D  G  F  C  S  I  L  P  C :   F  L  T  A  F  V  A  D  *  L  I  C  L  L  Q  L  S  C  L  *  K  R  K  N  I  L  S  *  G  C  L  S  C  D  A  D  C  C  H  L  Y  L  Q  M  Y  I  R  C  *  L  G  L  *  *  S  S  V  L  K  *  Q  I  L  L  S  S  F  L  I  L  S  Y  P  L  F  S  L  </second_frame>
            <third_frame>   V  L  R  K  E  E  K  Q  E  *  E  R  S  *  I  S  F  A  G  N  P  S  E  L  L  R  E  G  G  E  S  K  W :   K  I  L  Q  L  *  F  Q  K  E  T  H  *  Q  R  D  D  I  *  I  R  *  T  K  K :   G  W  V  R  S  H  W  I  W  H  L  F  H  F  S  C  H  N  V  V  L  R  Q  G  F  A  C  A  G  K   : Y  T  F  V  S  R  C  S  T  S  V  G  F  A  F  Y  I  T  A  L  Q  S  K  L  Q   : G  H  N  I  I  Y  A  W  A  L  S  H  I  C  S  L  A  S  C  G  Y  H  C  G  N  I  W  M  H  Y  S  L  R  :  L  F  L  A  I  H  Q  G  F  S  F  P  D  S  C  I  W  M  D  S  A  V  S  C  P   : A  S  *  P  L  S  *  L  T  D  *  F  V  Y  S  S  Y  P  V  C  K  R  G  R  I  Y  *  A  R  V  V  C  H  V  M  Q  I  A  V  T  F  I  F  K  C  I  L  D  V  D  *  D  Y  N  N  H  Q  F  *  S  S  K  S  C  Y  Q  V  F  L  Y  Y  P  I  P  C  F  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0058A04.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92675" stop="92654"/>
                    <exon start="92306" stop="92232"/>
                    <exon start="92101" stop="92010"/>
                    <exon start="91941" stop="91867"/>
                    <exon start="89250" stop="89153"/>
                    <exon start="89054" stop="88979"/>
                    <exon start="88248" stop="88225"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKVVNLSGRYCNSDFRKRHTSSEMTYELDEQKKVGLGLIGFGIFFTFLAIMLFFDRGLLALANILLLAGVALLLGLRSTLQLFKVNYKGTISFMLGLFLIFVRWPVVGIIVEIYGCIILFGCFWPSIKVFLFQIPVFGWILQYPALLLDRFRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 39 chains have been computed
$ 
$ memory statistics:
$ 58536 bytes spliced alignments in total
$ 27 spliced alignments have been stored
$ 2168 bytes was the average size of a spliced alignment
$ 25704 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1713 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 49 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-18 08:33:41
-->
