<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 06:00:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342302" ref_strand="+" ref_description="SGN-U342302        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:3130077-3130896 FORWARD | Aliases: T22K18.5(evalue: 6e-08, score=55.1) genbank/nr: SJCHGC09205(evalue: 4e-07, score=58.5)">
      <seq>tcaaatataccaacaatgggtagtgtgcatagttcttcaagaaaaagttgtaaaagtgatgaaaacagatgggaaaattcttgaatacaaagctcccatcaaagttcatcaaatattatcacaattttctaactcatgtaatttctaactcccatcaagtcattgaaaatcaacatcttcaaccaaatgatgagttgctaggtggccaaatttattatcttttgccaagtttaccaaagccaaaatcagccaaaaaaaaggtcaagtttgcaaatgatcaagtgaaaaagaaggtcaagtttgcaaatgatgatcaattagtaaatgatgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="-" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="2739" stop="1809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2439" g_stop="2109" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="-" ref_id="SGN-U342302" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2439" e_stop="2109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATATACCAACAATGGGTAAT-TGCATAGTTCTTCAAGAAAAAGTTGTAAAAGTGATGAAAACAGATGGGAAAATTCTTGAATACAAAGCTCCCATCAAAGTTCATCAAATATTATCACAATTTTCTAAC-CATGTAATTTCTAACTCCCATCAAGTCATTGAAAATCAACATCTTCAACCAAATGATGAGTTGCTAGGTGGCCAAATTTATTATCTTTTGCCAAGTTTACCAAAGCCAAAATCAGCCAAAAAAAAGGTCAAGTTTGCAAATGATCAAGTGAAAAAGAAGGTCAAGTTTGCAAATGATGATCAATTAGTAAATGATGAGA</genome_strand>
        <mrna_strand>TCAAATATACCAACAATGGGTAGTGTGCATAGTTCTTCAAGAAAAAGTTGTAAAAGTGATGAAAACAGATGGGAAAATTCTTGAATACAAAGCTCCCATCAAAGTTCATCAAATATTATCACAATTTTCTAACTCATGTAATTTCTAACTCCCATCAAGTCATTGAAAATCAACATCTTCAACCAAATGATGAGTTGCTAGGTGGCCAAATTTATTATCTTTTGCCAAGTTTACCAAAGCCAAAATCAGCCAAAAAAAAGGTCAAGTTTGCAAATGATCAAGTGAAAAAGAAGGTCAAGTTTGCAAATGATGATCAATTAGTAAATGATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="-" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="39107" stop="38172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38807" g_stop="38495" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38807" e_stop="38495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGGAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACTGTCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATGTTCTTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCCTATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAATTCTAC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="+" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="56544" stop="57321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56844" g_stop="57020" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56844" e_stop="57020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGACACCAAACTCTATCACACATGCGCGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="+" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="58020" stop="59332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58320" g_stop="59032" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58320" e_stop="59032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAACCCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTGTATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATAAATGCAGCAGGGGCATTCGTAAGGCCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATCTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCGTTTCTTAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCC-TTTGCTCACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="+" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="58540" stop="59798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58840" g_stop="59498" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58840" e_stop="59498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCGTTTCTTAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCGGGCAGATCTGCAGGGAACACATCTCGAAACTCACGGACAACCGAAACTGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="+" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="58609" stop="59966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58909" g_stop="59666" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58909" e_stop="59666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCGTTTCTTAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCGGGCAGATCTGCAGGGAACACATCTCGAAACTCACGGACAACCGAAACTGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATATGAAAATGTAGATCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATCAACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="-" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="60636" stop="58628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60336" g_stop="60150" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60149" i_stop="59406" i_length="744">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59405" g_stop="58939" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="654" r_length="467" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60336" e_stop="60150"/>
          <exon e_start="59405" e_stop="58939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTATAGCGAAATCTTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTAGAGGGAGTAAAGCCAGATGACTTCACCATGACAACTACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGATAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACTGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCTTGATTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTATCCTAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGCTCACCAAAACGGCCGGGGTGATGGGAAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGAGCCCATTGTTATGCTTTCCCTGGGAGATCGGAGGCGGAGACATCTGATGCTGTCATCACAGGTAATCTTTCGGTTTGTGATTGCATGGCTTTTGTATTGTTTGACCCTGGATCTACATTTTCATATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCAGTTTCGGTTGTCCGTGAGTTTCGAGATGTGTTCCCTGCAGATCTGCCCGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCAATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGGGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAGAAACGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTT</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335939" ref_strand="+" ref_description="SGN-U335939        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-47, score=191)">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="+" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="58848" stop="59978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59136" g_stop="59678" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="+" ref_id="SGN-U335939" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59136" e_stop="59678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCTCGAAACTCACGGACAACCGAAACTGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATATGAAAATGTAGATCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCAGATGTCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="+" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="59012" stop="59938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59312" g_stop="59642" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59312" e_stop="59642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATATGAAAATGTAGATCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="+" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="59223" stop="61259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59523" g_stop="60959" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59523" e_stop="60959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATATGAAAATGTAGATCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCTCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTTCCCATCACCCCGGCCGTTTTGGTGAGCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTAGGATAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAATCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCAGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTATCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTAGTTGTCATGGTGAAGTCATCTGGCTTTACTCCCTCTACCTCTATCACGAAGTCTACCACTTCTTGAAAAGATTTCGCTATAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCATTTTCCTATCCCTCAAGGTCTGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATATCCAATAAGGCATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGGCCTTGATCAGATAACCCGCTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="-" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="61263" stop="60110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60963" g_stop="60410" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60963" e_stop="60410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCAGTTTCAGAGGTACAACATGCAGCCACTATGGCTCATCGTATGGATGCCTTATTGGATATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="+" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="60298" stop="61331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60598" g_stop="61030" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60598" e_stop="61030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATATCCAATAAGGCATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGGCCTTGATCAGATAACCCGCTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACAACCTCTTCCACGGCCTCTTGCCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323430" ref_strand="+" ref_description="SGN-U323430        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif | chr3:19604151-19606797 REVERSE | Aliases: F8J2.40(evalue: 4e-67, score=251) genbank/nr: gi|15231700|ref|NP_190855.1| expressed protein [Arabidopsis thaliana] gi|11292181|pir||T47544 hypothetical protein F8J2.40 - Arabidopsis thaliana gi|7529711|emb|CAB86891.1| putative protein [Arabidopsis thaliana] gi|24111367|gb|AAN46807.1| At3g52870/F8J2_40 [Arabidopsis thaliana](evalue: 3e-65, score=251)">
      <seq>agaaagacaacattatgagtacataattgctggcgggcagatactgcataagctaaccagaacttctcttgacacaactaaaggccccgaaggggcaaaatggatctttgtgatgagcacatcaaaaagactatatgctggtgagaaaaagaaaggaatgtttcatcattccagttttctggctggtggggctgctttagctgctggaagactagtggtacaggatggaacagtgaagtctatttcaccttacagtggccattatcggccatcagatgatagcctcgatacctttttatcaattctcaaggaacacggagtcaacgtggatgaagttgagataaaaaaggcaagtgaagactatgacacctccacagatgtaaatataaaatctattgacaaacgtccgccaaaactttcaactcctccaccatcagtggaagaagagaagcaagtgcattccacagaatcaattggatcaccacaagctgcaacaagtccaacttgctgctaccagagaacgctctcaggcggccttcacagcccgcgaacagaagtaccaaagactgctatactagaaaggatcaattcgaagaaatcttcaagatcctatcaactaggccatcaactatctcgagtctggtcaacaggcgccggcccaagaattggctgcattgctgattaccctgctgaactaagatggcaagccttggaactaactaatgtttcacctaaaccttctccatcatcaactcctagacctttagacgctctttgttcgcctacttgttcttccccagttttcaacaatgtacttgtcaagtcttcttgaattcgaatctttgttttcttaaattccatgttcctgctgcaatattactctagcaaatgtaaatgcctttgttcttcagttatttgtacttcctaacattcgagtatgagttatgtcctcgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="-" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="82707" stop="80549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82407" g_stop="82263" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82262" i_stop="82169" i_length="94">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82168" g_stop="82076" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="238" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82075" i_stop="81841" i_length="235">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81840" g_stop="81739" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="340" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81738" i_stop="81466" i_length="273">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81465" g_stop="80852" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="954" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="955" polyA_stop="972"/>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="-" ref_id="SGN-U323430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>954</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82407" e_stop="82263"/>
          <exon e_start="82168" e_stop="82076"/>
          <exon e_start="81840" e_stop="81739"/>
          <exon e_start="81465" e_stop="80852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGACAACATTATGAGTACATAATTGCTGGCGGGCAGATACTGCATAAGCTAACCAGAACTTCTCTTGACACAACTAAAGGCCCCGAAGGGGCAAAATGGATCTTTGTGATGAGCACATCAAAAAGACTATATGCTGGTGAGGTGAGTGGTATAGTGTTGCTGCATAAATTTCTTGCTTTTGTTTTCCTTTATTAATATAACTTCATTATTCTTACGATTCTGTAATGTCTTTCAGAAAAAGAAAGGAATGTTTCATCATTCCAGTTTTCTGGCTGGTGGGGCTGCTTTAGCTGCTGGAAGACTAGTGGTACAGGATGGAACAGTGAAGGTAAATTGATCTAAATATCGTAAATCTTTAACTATCAAACATCAAATTGATCAAGTAGATTATGTTTACCTTCGTCGAATATGATCCTTATATAACTCTGTCTGTGATAATTCTTTCGCAATTCCCTGGCAACTCCAGTACTCTACACCATAAAACTGTTGTACAGACTCTTTTGCGTTGCTGTTTACAATGTTTTGCTTGAATACTGCAACACTCTGACATTCTTTTTCTTCAGTCTATTTCACCTTACAGTGGCCATTATCGGCCATCAGATGATAGCCTCGATACCTTTTTATCAATTCTCAAGGAACACGGAGTCAACGTGGATGAAGTTGAGGTGAGTGATAATCCATGTGTCTAGTCTTACATCCATATTACTCTTCTGCATCTAACACATAATCCAAAAAATTATTTTCCCCTAAAGCCTATTCTAAGCTATGTTGCTTGAACTCTTCAAAATGACATTGAATACGAGGTGAATCCCCCCAATACCGGGCTGGAAGCTTGGGGCGAGATTCACCTTCAATACCAAGGGAGGCAGTTTTTAGGAGGTCCCTAGGCCTTTTACCAAAATGTCTAAATAATCCTCATCTTTGTGATCTGTCATCAGATAAAAAAGGCAAGTGAAGACTATGACACCTCCACAGATGTAAATATAAAATCTATTGACAAACGTCCGCCAAAACTTTCAACTCCTCCACCATCAGTGGAAGAAGAGAAGCAAGTGCATTCCACAGAATCAATTGGATCACCACAAGCTGCAACAAGTCCAACTTGCTGCTACCAGAGAACGCTCTCAGGCGGCCTTCACAGCCCGCGAACAGAAGTACCAAAGACTGCTATACTAGAAAGGATCAATTCGAAGAAATCTTCAAGATCCTATCAACTAGGCCATCAACTATCTCGAGTCTGGTCAACAGGCGCCGGCCCAAGAATTGGCTGCATTGCTGATTACCCTGCTGAACTAAGATGGCAAGCCTTGGAACTAACTAATGTTTCACCTAAACCTTCTCCATCATCAACTCCTAGACCTTTAGACGCTCTTTGTTCGCCTACTTGTTCTTCCCCAGTTTTCAACAATGTACTTGTCAAGTCTTCTTGAATTCGAATCTTTGTTTTCTTAAATTCCATGTTCCTGCTGCAATATTACTCTAGCAAATGTAAATGCCTTTGTTCTTCAGTTATTTGTACTTCCTAACATTCGAGTATGAGTTATGTCCTCGC</genome_strand>
        <mrna_strand>AGAAAGACAACATTATGAGTACATAATTGCTGGCGGGCAGATACTGCATAAGCTAACCAGAACTTCTCTTGACACAACTAAAGGCCCCGAAGGGGCAAAATGGATCTTTGTGATGAGCACATCAAAAAGACTATATGCTGGTGAG..............................................................................................AAAAAGAAAGGAATGTTTCATCATTCCAGTTTTCTGGCTGGTGGGGCTGCTTTAGCTGCTGGAAGACTAGTGGTACAGGATGGAACAGTGAAG...........................................................................................................................................................................................................................................TCTATTTCACCTTACAGTGGCCATTATCGGCCATCAGATGATAGCCTCGATACCTTTTTATCAATTCTCAAGGAACACGGAGTCAACGTGGATGAAGTTGAG.................................................................................................................................................................................................................................................................................ATAAAAAAGGCAAGTGAAGACTATGACACCTCCACAGATGTAAATATAAAATCTATTGACAAACGTCCGCCAAAACTTTCAACTCCTCCACCATCAGTGGAAGAAGAGAAGCAAGTGCATTCCACAGAATCAATTGGATCACCACAAGCTGCAACAAGTCCAACTTGCTGCTACCAGAGAACGCTCTCAGGCGGCCTTCACAGCCCGCGAACAGAAGTACCAAAGACTGCTATACTAGAAAGGATCAATTCGAAGAAATCTTCAAGATCCTATCAACTAGGCCATCAACTATCTCGAGTCTGGTCAACAGGCGCCGGCCCAAGAATTGGCTGCATTGCTGATTACCCTGCTGAACTAAGATGGCAAGCCTTGGAACTAACTAATGTTTCACCTAAACCTTCTCCATCATCAACTCCTAGACCTTTAGACGCTCTTTGTTCGCCTACTTGTTCTTCCCCAGTTTTCAACAATGTACTTGTCAAGTCTTCTTGAATTCGAATCTTTGTTTTCTTAAATTCCATGTTCCTGCTGCAATATTACTCTAGCAAATGTAAATGCCTTTGTTCTTCAGTTATTTGTACTTCCTAACATTCGAGTATGAGTTATGTCCTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317971" ref_strand="+" ref_description="SGN-U317971        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | calmodulin-binding family protein, contains Pfam profile PF00612: IQ calmodulin-binding motif | chr3:19604151-19606797 REVERSE | Aliases: F8J2.40(evalue: 4e-76, score=281) genbank/nr: gi|15231700|ref|NP_190855.1| expressed protein [Arabidopsis thaliana] gi|11292181|pir||T47544 hypothetical protein F8J2.40 - Arabidopsis thaliana gi|7529711|emb|CAB86891.1| putative protein [Arabidopsis thaliana] gi|24111367|gb|AAN46807.1| At3g52870/F8J2_40 [Arabidopsis thaliana](evalue: 3e-74, score=281)">
      <seq>tacaactttctctctctaaaaactcactcactggacttcgttcgttgtccgaatttcaaggccattagtagagcagaagcagttatttgaccgagtctctctctcaatggaagtcgaaactaccggcgtgtcaaattttgatctcaacaactcttcatctcaggttagttctcttcctccgtatcgaaaactcatcgacatgtcgggttgtaaactgacggagctccgtattcccgattttcggagctccgacgacatgccggaactcgaaggattcggttcgccggtttctgccggtgtagagtgtgaaaacggtatggtttcgtttccggcgtctccttctgtatctgaaaatgtaggccaggaacgtgattttactgagtccgttgaaaagacgccgtcgaatgccgcgaagagattgcagaaagtttatcggagttatcgtacacggcgtatgttagctgactctgctgtggtagctgaagagctttggtggcaagcaatagattatgctcggttgaatcatagtacaatttcattcttcgattactcgaagccggagacggcggtttcacggtggaatcgcgtcggcttgaatgcttccaaggttggtaaaggtttatccaaagatgctgaagctcagacgttagcttttcaacactggattgaggctattgatccacgccatcgatatggacataacatgcatatctattatgaagaatggtgtaaaactgatgctggtcagcccttcttcttttggttggatcttggagatggcagaaaggttgatctcaaagaatgtccaagagctaagcttcagaaacaatgcataaagtatcttggacctcaagaaagacaacattatgagtacataattgctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="-" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="84925" stop="82074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84625" g_stop="84134" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84133" i_stop="83965" i_length="169">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83964" g_stop="83850" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="607" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83849" i_stop="83152" i_length="698">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83151" g_stop="83086" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="673" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83085" i_stop="82988" i_length="98">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82987" g_stop="82899" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="762" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82898" i_stop="82693" i_length="206">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82692" g_stop="82605" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="850" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="82604" i_stop="82410" i_length="195">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.786" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82409" g_stop="82374" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="886" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="-" ref_id="SGN-U317971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84625" e_stop="84134"/>
          <exon e_start="83964" e_stop="83850"/>
          <exon e_start="83151" e_stop="83086"/>
          <exon e_start="82987" e_stop="82899"/>
          <exon e_start="82692" e_stop="82605"/>
          <exon e_start="82409" e_stop="82374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACTTTCTCTCTCTAAAAACTCACTCACTGGACTTCGTTCGTTGTCCGAATTTCAAGGCCATTAGTAGAGCAGAAGCAGTTATTTGACCGAGTCTCTCTCTCAATGGAAGTCGAAACTACCGGCGTGTCAAATTTTGATCTCAACAACTCTTCATCTCAGGTTAGTTCTCTTCCTCCGTATCGAAAACTCATCGACATGTCGGGTTGTAAACTGACGGAGCTCCGTATTCCCGATTTTCGGAGCTCCGACGACATGCCGGAACTCGAAGGATTCGGTTCGCCGGTTTCTGCCGGTGTAGAGTGTGAAAACGGTATGGTTTCGTTTCCGGCGTCTCCTTCTGTATCTGAAAATGTAGGCCAGGAACGTGATTTTACTGAGTCCGTTGAAAAGACGCCGTCGAATGCCGCGAAGAGATTGCAGAAAGTTTATCGGAGTTATCGTACACGGCGTATGTTAGCTGACTCTGCTGTGGTAGCTGAAGAGCTTTGGTACGAGTCAATAATTTACTTTAATCAAATATAATTCATTTTTTTTATATTAACGTGAAAAAATTGCATCGTAGCAATATTTTTTTTGTAAATTTTTAAAATTATAAACTCGATTTATTTCAATATAACTGTAAAAATTAATTAAATTGACTTTGTCATTTGTATGAAGGTGGCAAGCAATAGATTATGCTCGGTTGAATCATAGTACAATTTCATTCTTCGATTACTCGAAGCCGGAGACGGCGGTTTCACGGTGGAATCGCGTCGGCTTGAATGCTTCCAAGGTACTCTCGATCTCAAATTATTAATCGTAATTTTCTTTTACGTAACATCGCCATAATTGAGGCATTGTCTTCGGTAATAATTGCTACTCAAGATAAAATTAGATAATTTTATTTTAGATTTTCTAAAATAAAAAATAACTTGAGATAATTATTTTTATAAATTACGACGGATAATTTTAAGTATGAAGAAATTTTACTTTGCAGATGATTGATGGCTAAATTATGCATAGATCTCGATACCAAGCTCAGGGATTAGTTTTACAATTGGTATAGTTTTGCAAGTTCTAGTTCATATAAAATTGAAAATTATTAAAAGATCTTATTATATACTATTCATTGTTTTTTATAATATAGAATATAATATAATTTGCCTTTTTTTTAGTTTTACTAGAAGAACTAGCACAAGGTCCCATAATTTAAAGCTGTTTTTGTCATGTTAGGTAATCTTTCATATTCCACTATTTATTTTGTGTAGTATTTAGCATAGTCCCCACATAAAGTTTTGAAGAAATAGCTATGTGGAATTATTCTATGCTACAAACAAAACAATCCGAAAACTCCTAACCGAGTATTATACTGAATATATTATTGTTCTAATCAAAATTTATAGTTGTAATGCAGAATTTATATCAGGACTATTTTTGGCATCTGAAAAAAACAAACAAGCTAAGTATTAACTATATGTACATTCTGGTTAGGTTGGTAAAGGTTTATCCAAAGATGCTGAAGCTCAGACGTTAGCTTTTCAACACTGGATTGAGGCTGTGAGTCTGTCCTTTTTACTCTGTTGCCCGGTCTTGCTTTGTTCAATTTCATTACTAATGAGATATGATATTTGATCTATGTGTTGTGGTAACTGTAGATTGATCCACGCCATCGATATGGACATAACATGCATATCTATTATGAAGAATGGTGTAAAACTGATGCTGGTCAGCCCTTCTTCTTTTGGTAAGGAAACTGAAGGCTGAAACACTGTCTCAAATGTAAATCCTCAGGTCGCCAAAGTCTATATCCTCCAAAAAGTAGTGCATTTTTGGAGTAGAACAACATAGACATTGACGACATGAAGATTTACATCTGAGACAGTGCATGTGATACCAGTTAAATATTATAAGGTTTAGTCTGGGTAGCTTAGAATGACTAGGCATGTGCAGGTTGGATCTTGGAGATGGCAGAAAGGTTGATCTCAAAGAATGTCCAAGAGCTAAGCTTCAGAAACAATGCATAAAGTATCTTGGACCTGTATGTGCTGAATCTTTTGTTACTCATGATCTACATATCATGTAGTTTAGCATCAATTACACACTGCAACAGACATATGTCCACTAAAATACTTGCACCAACAGCTCCGTCATACACGATCTAAACTTGATTCCTTGTTATGCATGTCCCAGCACACAACTCCTAATTGTTCCTTCTTCATCTTTTTGTTATCAGCAAGAAAGACAACATTATGAGTACATAATTGCTGGC</genome_strand>
        <mrna_strand>TACAACTTTCTCTCTCTAAAAACTCACTCACTGGACTTCGTTCGTTGTCCGAATTTCAAGGCCATTAGTAGAGCAGAAGCAGTTATTTGACCGAGTCTCTCTCTCAATGGAAGTCGAAACTACCGGCGTGTCAAATTTTGATCTCAACAACTCTTCATCTCAGGTTAGTTCTCTTCCTCCGTATCGAAAACTCATCGACATGTCGGGTTGTAAACTGACGGAGCTCCGTATTCCCGATTTTCGGAGCTCCGACGACATGCCGGAACTCGAAGGATTCGGTTCGCCGGTTTCTGCCGGTGTAGAGTGTGAAAACGGTATGGTTTCGTTTCCGGCGTCTCCTTCTGTATCTGAAAATGTAGGCCAGGAACGTGATTTTACTGAGTCCGTTGAAAAGACGCCGTCGAATGCCGCGAAGAGATTGCAGAAAGTTTATCGGAGTTATCGTACACGGCGTATGTTAGCTGACTCTGCTGTGGTAGCTGAAGAGCTTTG.........................................................................................................................................................................GTGGCAAGCAATAGATTATGCTCGGTTGAATCATAGTACAATTTCATTCTTCGATTACTCGAAGCCGGAGACGGCGGTTTCACGGTGGAATCGCGTCGGCTTGAATGCTTCCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTAAAGGTTTATCCAAAGATGCTGAAGCTCAGACGTTAGCTTTTCAACACTGGATTGAGGCT..................................................................................................ATTGATCCACGCCATCGATATGGACATAACATGCATATCTATTATGAAGAATGGTGTAAAACTGATGCTGGTCAGCCCTTCTTCTTTTG..............................................................................................................................................................................................................GTTGGATCTTGGAGATGGCAGAAAGGTTGATCTCAAAGAATGTCCAAGAGCTAAGCTTCAGAAACAATGCATAAAGTATCTTGGACCT...................................................................................................................................................................................................CAAGAAAGACAACATTATGAGTACATAATTGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344985" ref_strand="+" ref_description="SGN-U344985        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | GCN5-related N-acetyltransferase (GNAT) family protein, similar to SP:O93806 Glucosamine-phosphate N-acetyltransferase (EC 2.3.1.4) (Phosphoglucosamine transacetylase) (Phosphoglucosamine acetylase) {Candida albicans}; contains Pfam profile PF00583: acetyltransferase, GNAT family | chr5:5144096-5144545 REVERSE | Aliases: F14F8.150, F14F8_150(evalue: 9e-51, score=197) genbank/nr: GCN5-related(evalue: 5e-53, score=210)">
      <seq>gggcaatgatgcagagcgaaaactctgttgaagattcgcttcatatccgcaagctggaggttactgataaagaaaaaggctttattgaattgctgagacaattgactgtctgtgattctgtttcggacgagagatttaaggagagatttgaagaaatcgcgaaatatggggatgatcattgtatttgtgtgatcgaagatgttcgattagggaagattgttgctactggaagtgtgtttattgagaagaagtttgtgaggaattgtggtaaagctggacatattgaggatgttgtggtcgattcgagtgctcgtgggatgcaattaggtaagagaatcgttgaatatcttgctcatcatgctcattcaatggggtgttataaggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="+" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="92936" stop="93922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93236" g_stop="93622" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="+" ref_id="SGN-U344985" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93236" e_stop="93622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAATGATGCAGAGCGAAAACTCTGTTGAAGATTCGCTTCATATCCGCAAGCTGGAGGTTACTGATAAAGAAAAAGGCTTTATTGAATTGCTGAGACAATTGACTGTCTGTGATTCTGTTTCGGACGAGAGATTTAAGGAGAGATTTGAAGAAATCGCGAAATATGGGGATGATCATTGTATTTGTGTGATCGAAGATGTTCGATTAGGGAAGATTGTTGCTACTGGAAGTGTGTTTATTGAGAAGAAGTTTGTGAGGAATTGTGGTAAAGCTGGACATATTGAGGATGTTGTGGTCGATTCGAGTGCTCGTGGGATGCAATTAGGTAAGAGAATTGTTGAATATCTTGCTCATCATGCTCATTCAATGGGGTGTTATAAGGTAA</genome_strand>
        <mrna_strand>GGGCAATGATGCAGAGCGAAAACTCTGTTGAAGATTCGCTTCATATCCGCAAGCTGGAGGTTACTGATAAAGAAAAAGGCTTTATTGAATTGCTGAGACAATTGACTGTCTGTGATTCTGTTTCGGACGAGAGATTTAAGGAGAGATTTGAAGAAATCGCGAAATATGGGGATGATCATTGTATTTGTGTGATCGAAGATGTTCGATTAGGGAAGATTGTTGCTACTGGAAGTGTGTTTATTGAGAAGAAGTTTGTGAGGAATTGTGGTAAAGCTGGACATATTGAGGATGTTGTGGTCGATTCGAGTGCTCGTGGGATGCAATTAGGTAAGAGAATCGTTGAATATCTTGCTCATCATGCTCATTCAATGGGGTGTTATAAGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327583" ref_strand="+" ref_description="SGN-U327583        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G08820.1 | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr3:2677124-2679185 REVERSE | Aliases: T16O11.25 (evalue: 2e-60, score=228) genbank/nr: Pentatricopeptide(evalue: 4e-65, score=249)">
      <seq>atttatcaaatatatatgcatctaacaataaatgggacgattcagaaaagatcaggtcgtctatgaacgaaagaagaatgcagaagatacctgcatatagttggatagagattgatggaatagttcatgagtttcttgttggagatacataccatccaatatcagataacatatacgtcaaactcggtgaactgagcaaggagctaagagaggtaggttatgttccaagaacagaatacgttctatttgacatcgaagaggaggagaaggagcatttcgtggggtgtcatagtgagaagctcgcgcttgcatatggcttactaagtacgaaacctggtgatggtatcaggataataaagaatcttcgtatctgtggtgattgccatacgttcttcaagcttgtctcaatgataacggggagagaaattatcttacgagataataaccgtttccattgtttccttgaaggttcatgctcttgtggcgattactggtaagacttcagttggtaatatgatgttgcagaagagaattgaggccaattggtgccattcccttatgcaagaatagatagacctaatatttatctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="-" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="95536" stop="94344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95236" g_stop="94644" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="-" ref_id="SGN-U327583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95236" e_stop="94644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATCAAATATATATGCATCTAACAATAAATGGGACGATTCAGAAAAGATCAGGTCGTCTATGAACGAAAGAAGAATGCAGAAGATACCTGCATATAGTTGGATAGAGATTGATGGAATAGTTCATGAGTTTCTTGTTGGAGATACATACCATCCAATATCAGATAACATATACGTCAAACTCGGTGAACTGAGCAAGGAGCTAAGAGAGGTAGGTTATGTTCCAAGAACAGAATACGTTCTATTTGACATCGAAGAGGAGGAGAAGGAGCATTTCGTGGGGTGTCATAGTGAGAAGCTCGCGCTTGCATATGGCTTACTAAGTACGAAACCTGGTGATGGTATCAGGATAATAAAGAATCTTCGTATCTGTGGTGATTGCCATACGTTCTTCAAGCTTGTCTCAATGATAACGGGGAGAGAAATTATCTTACGAGATAATAACCGTTTCCATTGTTTCCTTGAAGGTTCATGCTCTTGTGGCGATTACTGGTAAGACTTCAGTTGGTAATATGATGTTGCAGAAGAGAATTGAGGCCAATTGGTGCCATTCCCTTATGCAAGAATAGATAGACCTAATATTTATCTTTCA</genome_strand>
        <mrna_strand>ATTTATCAAATATATATGCATCTAACAATAAATGGGACGATTCAGAAAAGATCAGGTCGTCTATGAACGAAAGAAGAATGCAGAAGATACCTGCATATAGTTGGATAGAGATTGATGGAATAGTTCATGAGTTTCTTGTTGGAGATACATACCATCCAATATCAGATAACATATACGTCAAACTCGGTGAACTGAGCAAGGAGCTAAGAGAGGTAGGTTATGTTCCAAGAACAGAATACGTTCTATTTGACATCGAAGAGGAGGAGAAGGAGCATTTCGTGGGGTGTCATAGTGAGAAGCTCGCGCTTGCATATGGCTTACTAAGTACGAAACCTGGTGATGGTATCAGGATAATAAAGAATCTTCGTATCTGTGGTGATTGCCATACGTTCTTCAAGCTTGTCTCAATGATAACGGGGAGAGAAATTATCTTACGAGATAATAACCGTTTCCATTGTTTCCTTGAAGGTTCATGCTCTTGTGGCGATTACTGGTAAGACTTCAGTTGGTAATATGATGTTGCAGAAGAGAATTGAGGCCAATTGGTGCCATTCCCTTATGCAAGAATAGATAGACCTAATATTTATCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323369" ref_strand="+" ref_description="SGN-U323369        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | hypothetical protein | chr1:21814309-21816688 REVERSE | Aliases: T4M14.2, T4M14_2(evalue: 4e-70, score=262) genbank/nr: Homeobox(evalue: 3e-86, score=322)">
      <seq>cgatgaaggtgttggagaggttgaggactcccggacatctaaacgcaagaatgatgacagtgaattttctgacagtgacaggtataaaaagctgaaaacttcaatggccagtgatagtgagctttgctcacgccgggcaaaaggtttcccaggaattaggttgtgcttgaggcatgctacacttccaagaataaaaattatggatttactcaaagacagtgataactatacttgtgcacaatctgttaaagatcatcaagccactgatattggcagtgtctcattcgactcagatgaccaagtaaatgaacttcatgatagtggggtcccatataccgcagtttctccgaccgagtcaccatggcaagccatgacgacctatgctcaacgtgtttgtttctttggttcttgtgtggaacagaactctctggtatatccggaaatgtttagatctgtttattcagctatccaagtggctggtgaccaaggtttgtgcatgaaagatatctcaaggattctaaagatgcaagataaaaagctttctgaagctgtcattgaggtgctagaagcatttggacgagttgtgaaggtcaatgcttacgattctattcgggtggttgattctttatatcgttccaagtactttttgattccagtggctgctattcatgaagatgctacgtcatctccttgtgaagattccaaggctaaaacagatgaggagtctgctacacataatggagaaaatcataaagatgtggagttgcagaaggaaatacgtgggaattctgataaggtacacaaagtcacgattcttaatcttcctaaagcggttgttgaaccttcaagggaaaagcaaaccatcaatgaggcaaaaggttgtcggcctactgaagctagttcacccacaaaaaatcacccagaagaaccatatgatctccgctctactggtttgcatttgtgtaagccaatattgccttggctaaatggtgatggtactacaaatgaacgtgtctacaaggggcttgtacgccgtgttcttggcatagtgatgcaaaatccgggaataaaagagggtgatattatctgccacatgcatgttctgaatcctcagagttgcagaagtttgttaaacatgatggtcctggataacgttatcttttcgcgtaagattcctcaggcaaatccaagcggagcaccaacaattctgagtagtcttattggtagccatttcaagaaaccaaagttagtttcaagggaacatttctttgcaaacccctccagtacacacctgttgtaatgtaggtagatgttggatctagttatttatttgtttttgatcttttcgtcctcttggttcgtgtttgggactaaggcatagtagttgttgttgtcatctcctcctgctcatctttgtatagtaatttctctaggaaaaaattgcacaacttatgcccgtccgatgcagaatcatatgtaaatgtaatttaatagattttcaaaaatcctactacaagttattattaacctgtggttgttatattagctagaaaaatgttcaattaggaaattaaaatacattattttcacatttactattttgtacaacatgaattttagttatatacagtagtacgggtacaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="-" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="101562" stop="96538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101262" g_stop="100733" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100732" i_stop="100657" i_length="76">
            <donor d_prob="0.825" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100656" g_stop="100598" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="589" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100597" i_stop="99236" i_length="1362">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.261" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99235" g_stop="98750" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="1075" r_length="486" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98749" i_stop="98197" i_length="553">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98196" g_stop="98158" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1076" r_stop="1114" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98157" i_stop="97377" i_length="781">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97376" g_stop="96833" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1115" r_stop="1658" r_length="544" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="-" ref_id="SGN-U323369" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101262" e_stop="100733"/>
          <exon e_start="100656" e_stop="100598"/>
          <exon e_start="99235" e_stop="98750"/>
          <exon e_start="98196" e_stop="98158"/>
          <exon e_start="97376" e_stop="96833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATGAAGGTGTTGGAGAGGTTGAGGACTCCCGGACATCTAAACGCAAGAATGATGACAGTGAATTTTCTGACAGTGACAGGTATAAAAAGCTGAAAACTTCAATGGCCAGTGATAGTGAGCTTTGCTCACGCCGGGCAAAAGGTTTCCCAGGAATTAGGTTGTGCTTGAGGCATGCTACACTTCCAAGAATAAAAATTATGGATTTACTCAAAGACAGTGATAACTATACTTGTGCACAATCTGTTAAAGATCATCAAGCCACTGATATTGGCAGTGTCTCATTCGACTCAGATGACCAAGTAAATGAACTTCATGATAGTGGGGTCCCATATACCGCAGTTTCTCCGACCGAGTCACCATGGCAAGCCATGACGACCTATGCTCAACGTGTTTGTTTCTTTGGTTCTTGTGTGGAACAGAACTCTCTGGTATATCCGGAAATGTTTAGATCTGTTTATTCAGCTATCCAAGTGGCTGGTGACCAAGGTTTGTGCATGAAAGATATCTCAAGGATTCTAAAGATGCAAGGTATCTAACCACAAACCTACAAGGTCTTCTAACCCCGCCATTTAAATACTCATTGCTTCTATTTTTTTTTTTACAGATAAAAAGCTTTCTGAAGCTGTCATTGAGGTGCTAGAAGCATTTGGACGAGTTGTGAAGGTGCGTCTGAATTAACAATTAGCTATCTTCCCTTGTTGTTGATGAAGTTTCATGCACCTGCATAGAGTTATGAAAGAATTCTGATGAAATCCTCAGTTATAGTTTATCTGATGTTATTTTTGTGAAATAAGACTTCTCACTCATTTACTGAATAGGAAATATTAGTAAATGGATTGTTTTAAAAAGAGTCTTTCTTGTAGAAGAAATAGAAGCTGTTGGTTCATTTGCTTTTAAAACGGATACTTGTAATGGTATGGTCATGTGGATTCACTTGTATTGAGTGTAAACTAGTTTTGCCTGAAACTCCTCTATGTCTCTTCATTGTGTGTTTTACTTTTCTGTGTAGAGTGTTTGTCTTGTCACTTGTGCGTTGAATCTTGAGAATTTACTTCATATGACACTGACTGATTGCTCCTGAAAACAGATGGATATTACTTTGAAATTCCCCATAGCCCCCAAATTGTATTGTAATTAGAATAATGGCATATTTGGTATGTTTTAACATGAATATGCTGGTTTAAAGTGTCATGTGGCACCCTTTCCTTTGTGGTCTGTCCCAAAAAAAATGTCACCTTACTATAATTATAAATAATTTTAACTTTTAAATTCCTCTTTTACACTCAATGAAATGAAACTCAGCTACACAAATATGTAAGGATTGTTTTAAACCACAAGTTTCAAAAGTCTTTCTTTTTTTCTTAAACACCGTGCCAAGTCAAAGGGTGTCAAATAAAATGGGATAGAGGGAGTATTAAGAAAATTGTTGTTTATATAAAGAATCTACCATACATCTCCTGATTTTTTGTTAAAGCATGATGTACAATAAAGACGGGTTGGAAAGAGAAGAAAATATGAGTTAAGAGGCCAAAATGCTTTGATGAGAGTTCCCTGATGTCTTGAGTTGGTTCAGTGATATGGAAACTTTTGTGGGTTAAAAAATGAATCATGTAACTAGGCACCCAAATTGGCATAGTTGTCATGAACATGTACTTCAAAATTCTTGTATTATTTGTAGATTGCTCATGAGTTTAAGTTTGGTGTGTTGGCGTTCTTCTCAGTTAAGTGTTAGTATGTTTAGTGTTGTGGATTAATATATCATTGATCCACTTGTTCTATGAATAAAATTGATTTACATGCTTAATCGTAGCTTCGGCAATATTGTGTGGAGGTAACCACTATAACTCAATAAGAGACCCGTGACATTATGTATTAAGCTTGTTGTAGTTTGTTTGTTTTACATGTGGTTTGAGTAAGGAAAGATGGCACTATAGCTAGTGATGTAATTAATAGAGAATGGAACAGAGTGCAGTAGAAGGCCCATCTTCTATTTAACTAATCATCTAGTGGCCACACAAAATGCAGGTCAATGCTTACGATTCTATTCGGGTGGTTGATTCTTTATATCGTTCCAAGTACTTTTTGATTCCAGTGGCTGCTATTCATGAAGATGCTACGTCATCTCCTTGTGAAGATTCCAAGGCTAAAACAGATGAGGAGTCTGCTACACATAATGGAGAAAATCATAAAGATGTGGAGTTGCAGAAGGAAATACGTGGGAATTCTGATAAGGTACACAAAGTCACGATTCTTAATCTTCCTAAAGCGGTTGTTGAACCTTCAAGGGAAAAGCAAACCATCAATGAGGCAAAAGGTTGTCGGCCTACTGAAGCTAGTTCACCCACAAAAAATCACCCAGAAGAACCATATGATCTCCGCTCTACTGGTTTGCATTTGTGTAAGCCAATATTGCCTTGGCTAAATGGTGATGGTACTACAAATGAACGTGTCTACAAGGGGCTTGTACGCCGTGTTCTTGGCATAGTGATGCAAAATCCGGGAATAAAAGAGGTACGTCTTTTACTTGCGTAAAAACATATATACTTGATCATGACCAGTGAATCTGTGCAATTTTGAAGTATTACTTTCTAATTTTGTGCATAATGAATTGCTTCAAAATATTTGGGACAATTGATCCTTGTTGGTTGTAGAATAAATCAGTTAATTTCTTCTTAATTTTTTTCTAGCTCTCGTTGTCAATACAGTATCTTTTTTTTTTTCATTTCTCTTAGTCTTTAGTGCTAGGTTCATTTGCTTCTCTATCTTTTTCAATGTTCTCACAGATTTTGTACTGTTCTTGGGAACACCACTTCATATAAATTTGTTATGCTTCATGTCATATGGATTCATTTCCTAATGAATACTGGAACTCAATCATTGATGATTGAATCATAGGGTCATTCTTTTTCTTCATCTTGATCATTGATGAACACTGCATATTTTCAGCTTGACTGTTTTATGTATAATCCGTCCTCGTAGCAATATATATATATATATATATATATAAACAGATACTTTTAACTTATATTATTAGTTTCAAACTGACTTCTTAATTATTGTTCAGGGTGATATTATCTGCCACATGCATGTTCTGAATCCTCAGGTATGTTATTTCTGTTTCCTCGGACTTGTTTCTTCAGTCTGTTGATTATCAGATAAAATGTAACATGAAGCAGTATCATTGTTCTTGCCCAAGAAATAATAAAATTCCAATGATCTCTTCTCCCAAGGCTCTCTTTCCATAAATTATGAGCTGCTCAAAATTATCATGTTTTCTATTAAACCAATCTGTGACTTCCTCTAGCCAGATTTATCCTTCCGAGTGCGCATTTGGAACTCCTGATGTGCCTTCTATAAACAAAGTTCATCTCCTTACCATACTTGTAGTTTCTACATACCGGGATATTTCTAGTTAGTGAGATAGTTTGCATCCTAGGCTAGGGGTGGAGTTAGAAGCTCAGCTACGGGTCGAAACCAATAGCTTTTCCTTGAATAATGTAGTTGTGTTGAGAAATTTATTAAATATGTACACATTAAATTTAGAATCTAGTTATCAACACTTCTGGAGTCATTGTTCTAAAATCCCAGAACCCATAAAGTTGAAATCCTGACTCCGTATCTCTTGAGGCAGAGATTTGCTGGCACCTAATGGAGATCTTAAAGTTTCAACAATTATTCAAATCCTTTTGCTTGTAATGTGTTATGCATCTCTACCTCAACGAGGTAGAGGTAACGTATGTTTACACTTTACCTACACCAGACTTCACTTATCGAATTACACTAAGTTATGTTGTTGTGTAGTAGTAATGTTTTATGGGCATGAGATAGACAAGACACTTTTACATCTTCTCATCTGCTAAAACAATTCTTGTTGTGTCTTTCAGAGTTGCAGAAGTTTGTTAAACATGATGGTCCTGGATAACGTTATCTTTTCGCGTAAGATTCCTCAGGCAAATCCAAGCGGAGCACCAACAATTCTGAGTAGTCTTATTGGTAGCCATTTCAAGAAACCAAAGTTAGTTTCAAGGGAACATTTCTTTGCAAACCCCTCCAGTACACACCTGTTGTAATGTAGGTAGATGTTGGATCTAGTTATTTATTTGTTTTTGATCTTTTCGTCCTCTTGGTTCGTGTTTGGGACTAAGGCATAGTAGTTGTTGTTGTCATCTCCTCCTGCTCATCTTTGTATAGTAATTTCTCTAGGAAAAAATTGCACAACTTATGCCCGTCCGATGCAGAATCATATGTAAATGTAATTTAATAGATTTTCAAAAATCCTACTACAAGTTATTATTAACCTGTGGTTGTTATATTAGCTAGAAAAATGTTCAATTAGGAAATTAAAATACATTATTTTCACATTTACTATTTTGTACAACATGAATTTTAGTTATATACAGTAGTACGGGTACAAATAATTAGAGTTGG</genome_strand>
        <mrna_strand>CGATGAAGGTGTTGGAGAGGTTGAGGACTCCCGGACATCTAAACGCAAGAATGATGACAGTGAATTTTCTGACAGTGACAGGTATAAAAAGCTGAAAACTTCAATGGCCAGTGATAGTGAGCTTTGCTCACGCCGGGCAAAAGGTTTCCCAGGAATTAGGTTGTGCTTGAGGCATGCTACACTTCCAAGAATAAAAATTATGGATTTACTCAAAGACAGTGATAACTATACTTGTGCACAATCTGTTAAAGATCATCAAGCCACTGATATTGGCAGTGTCTCATTCGACTCAGATGACCAAGTAAATGAACTTCATGATAGTGGGGTCCCATATACCGCAGTTTCTCCGACCGAGTCACCATGGCAAGCCATGACGACCTATGCTCAACGTGTTTGTTTCTTTGGTTCTTGTGTGGAACAGAACTCTCTGGTATATCCGGAAATGTTTAGATCTGTTTATTCAGCTATCCAAGTGGCTGGTGACCAAGGTTTGTGCATGAAAGATATCTCAAGGATTCTAAAGATGCAAG............................................................................ATAAAAAGCTTTCTGAAGCTGTCATTGAGGTGCTAGAAGCATTTGGACGAGTTGTGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATGCTTACGATTCTATTCGGGTGGTTGATTCTTTATATCGTTCCAAGTACTTTTTGATTCCAGTGGCTGCTATTCATGAAGATGCTACGTCATCTCCTTGTGAAGATTCCAAGGCTAAAACAGATGAGGAGTCTGCTACACATAATGGAGAAAATCATAAAGATGTGGAGTTGCAGAAGGAAATACGTGGGAATTCTGATAAGGTACACAAAGTCACGATTCTTAATCTTCCTAAAGCGGTTGTTGAACCTTCAAGGGAAAAGCAAACCATCAATGAGGCAAAAGGTTGTCGGCCTACTGAAGCTAGTTCACCCACAAAAAATCACCCAGAAGAACCATATGATCTCCGCTCTACTGGTTTGCATTTGTGTAAGCCAATATTGCCTTGGCTAAATGGTGATGGTACTACAAATGAACGTGTCTACAAGGGGCTTGTACGCCGTGTTCTTGGCATAGTGATGCAAAATCCGGGAATAAAAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATATTATCTGCCACATGCATGTTCTGAATCCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAGAAGTTTGTTAAACATGATGGTCCTGGATAACGTTATCTTTTCGCGTAAGATTCCTCAGGCAAATCCAAGCGGAGCACCAACAATTCTGAGTAGTCTTATTGGTAGCCATTTCAAGAAACCAAAGTTAGTTTCAAGGGAACATTTCTTTGCAAACCCCTCCAGTACACACCTGTTGTAATGTAGGTAGATGTTGGATCTAGTTATTTATTTGTTTTTGATCTTTTCGTCCTCTTGGTTCGTGTTTGGGACTAAGGCATAGTAGTTGTTGTTGTCATCTCCTCCTGCTCATCTTTGTATAGTAATTTCTCTAGGAAAAAATTGCACAACTTATGCCCGTCCGATGCAGAATCATATGTAAATGTAATTTAATAGATTTTCAAAAATCCTACTACAAGTTATTATTAACCTGTGGTTGTTATATTAGCTAGAAAAATGTTCAATTAGGAAATTAAAATACATTATTTTCACATTTACTATTTTGTACAACATGAATTTTAGTTATATACAGTAGTACGGGTACAAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327219" ref_strand="+" ref_description="SGN-U327219        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | ATP phosphoribosyltransferase -related, contains weak similarity to Swiss-Prot:P10366 ATP phosphoribosyltransferase (Escherichia coli) | chr1:5988636-5995112 REVERSE | Aliases: F28G4.7(evalue: 2e-46, score=182) genbank/nr: Homeobox(evalue: 1e-47, score=191)">
      <seq>aattttagtgaaaatactgaagattctggtacaccaataagctcaaataggatcgctcagaagtatgtgaatcttactattggtggcatccccgtcagtaaacgattatatgaatcagcagcagttgctaatgctgcagagctatttaagctcatctttctctgtagctcaaaatctccacttgtgccaaccttgcttgctgaaactttaaggcgctattctgagcatgatctttttgctgctttcaactacctcagggagaaaaaagttttgattggtggtcattccaattgtccttttgtcctttctcaaaccttcttgaattgtatagaattttctccattcccaagtgataccggaaaaagagctgctaagtttgctagctggctttgtgaaagagagaaggaattgattgctgagggggtggatcttccaacagatttgcagtgtggagatgtttaccaccttcttgctctgctttcttcaggagaactatctattgcaccatgcctacccgatgaaggtgttggagaggttgaggactcccggacatctaaacgcaagaatgatgacagtgaatttttctgacagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0094P20-miEbU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0094P20.1" temp_strand="-" temp_description="C09SLm0094P20.1  EF647614.1 htgs_phase:2 submitted_to_sgn_as:C09SLm0094P20 upload_account_name:spain">
        <position start="102858" stop="100886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102558" g_stop="102286" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102285" i_stop="101505" i_length="781">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101504" g_stop="101186" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="593" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0094P20.1" gen_strand="-" ref_id="SGN-U327219" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0094P20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102558" e_stop="102286"/>
          <exon e_start="101504" e_stop="101186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTAGTGAAAATACTGAAGATTCTGGTACACCAATAAGCTCAAATAGGATCGCTCAGAAGTATGTGAATCTTACTATTGGTGGCATCCCCGTCAGTAAACGATTATATGAATCAGCAGCAGTTGCTAATGCTGCAGAGCTATTTAAGCTCATCTTTCTCTGTAGCTCAAAATCTCCACTTGTGCCAACCTTGCTTGCTGAAACTTTAAGGCGCTATTCTGAGCATGATCTTTTTGCTGCTTTCAACTACCTCAGGGAGAAAAAAGTTTTGGTAAATCTTGTTTTCTACTACTATGTATTTAGATGCTGGCCTTGGTACATTTTTTAACTGTCTCTCCATGTCAATTTATGTGATAATATTTCTGTTTAGAGATGTTCAAAATACTTTATATGATTCCATTACATATACTAGTCTAATGTTTCATCAATTTTCAAAAATTTAATTTCATCAAACAATTGAAATTATTTTGTACTTTTATGTGATGTAGGACTAGCTTTTCATTCATCACCATAATTTTTTTTTTTGACAAAGGTAACAAGTGTTTGTATAAATCTTCAGCATTAAGGCTGGGGTCCCAAAAAAATTACATCACAGAACTAATTACAACTGAGTAGGCTCAGCAACCCAAAAAAAATCTATCTCTAGATCCTATCTCATCTTACAAGGATCCTAAGATGTCTACAATCGCTACAGGATCATCTATATAGGATCACCATAATATTTTCTTCCACTTCAGTTAGTATAATATATTTATATATGTCTTAAATTTTGTGCTAGTCAAATGCCATATAAAAAAACAGGAGTATAAATTTACAGCTTGTTTTTTACAAGTAATCGGTCTTCACTTATGTCCTATGACTATAAACGTAAACTACTTCATCAAGACTATAAACGTAAACTAAATGAAATTCACTATCATTTTCTTCAGTAGGTGCAACTGTTGCTACAAAGACCCATCCTATGTCTTGACCTATAATTAGAAAAAGATTTGTCTTCATCTGTTGTTTTCTCCTGCAAATATTTCCTAAGCTTTAAAAATTTCTCCTTGCAGATTGGTGGTCATTCCAATTGTCCTTTTGTCCTTTCTCAAACCTTCTTGAATTGTATAGAATTTTCTCCATTCCCAAGTGATACCGGAAAAAGAGCTGCTAAGTTTGCTAGCTGGCTTTGTGAAAGAGAGAAGGAATTGATTGCTGAGGGGGTGGATCTTCCAACAGATTTGCAGTGTGGAGATGTTTACCACCTTCTTGCTCTGCTTTCTTCAGGAGAACTATCTATTGCACCATGCCTACCCGATGAAGGTGTTGGAGAGGTTGAGGACTCCCGGACATCTAAACGCAAGAATGATGACAGTGAA-TTTTCTGACAGTG</genome_strand>
        <mrna_strand>AATTTTAGTGAAAATACTGAAGATTCTGGTACACCAATAAGCTCAAATAGGATCGCTCAGAAGTATGTGAATCTTACTATTGGTGGCATCCCCGTCAGTAAACGATTATATGAATCAGCAGCAGTTGCTAATGCTGCAGAGCTATTTAAGCTCATCTTTCTCTGTAGCTCAAAATCTCCACTTGTGCCAACCTTGCTTGCTGAAACTTTAAGGCGCTATTCTGAGCATGATCTTTTTGCTGCTTTCAACTACCTCAGGGAGAAAAAAGTTTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTGGTCATTCCAATTGTCCTTTTGTCCTTTCTCAAACCTTCTTGAATTGTATAGAATTTTCTCCATTCCCAAGTGATACCGGAAAAAGAGCTGCTAAGTTTGCTAGCTGGCTTTGTGAAAGAGAGAAGGAATTGATTGCTGAGGGGGTGGATCTTCCAACAGATTTGCAGTGTGGAGATGTTTACCACCTTCTTGCTCTGCTTTCTTCAGGAGAACTATCTATTGCACCATGCCTACCCGATGAAGGTGTTGGAGAGGTTGAGGACTCCCGGACATCTAAACGCAAGAATGATGACAGTGAATTTTTCTGACAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2439" PGL_stop="2109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2439" e_stop="2109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="2439" e_stop="2109" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2439" stop="2109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342302" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAATATACCAACAATGGGTAATTGCATAGTTCTTCAAGAAAAAGTTGTAAAAGTGATGAAAACAGATGGGAAAATTCTTGAATACAAAGCTCCCATCAAAGTTCATCAAATATTATCACAATTTTCTAACCATGTAATTTCTAACTCCCATCAAGTCATTGAAAATCAACATCTTCAACCAAATGATGAGTTGCTAGGTGGCCAAATTTATTATCTTTTGCCAAGTTTACCAAAGCCAAAATCAGCCAAAAAAAAGGTCAAGTTTGCAAATGATCAAGTGAAAAAGAAGGTCAAGTTTGCAAATGATGATCAATTAGTAAATGATGAGA</gDNA_template>
            <first_frame> S  N  I  P  T  M  G  N  C  I  V  L  Q  E  K  V  V  K  V  M  K  T  D  G  K  I  L  E  Y  K  A  P  I  K  V  H  Q  I  L  S  Q  F  S  N  H  V  I  S  N  S  H  Q  V  I  E  N  Q  H  L  Q  P  N  D  E  L  L  G  G  Q  I  Y  Y  L  L  P  S  L  P  K  P  K  S  A  K  K  K  V  K  F  A  N  D  Q  V  K  K  K  V  K  F  A  N  D  D  Q  L  V  N  D  E  </first_frame>
            <second_frame>  Q  I  Y  Q  Q  W  V  I  A  *  F  F  K  K  K  L  *  K  *  *  K  Q  M  G  K  F  L  N  T  K  L  P  S  K  F  I  K  Y  Y  H  N  F  L  T  M  *  F  L  T  P  I  K  S  L  K  I  N  I  F  N  Q  M  M  S  C  *  V  A  K  F  I  I  F  C  Q  V  Y  Q  S  Q  N  Q  P  K  K  R  S  S  L  Q  M  I  K  *  K  R  R  S  S  L  Q  M  M  I  N  *  *  M  M  R </second_frame>
            <third_frame>   K  Y  T  N  N  G  *  L  H  S  S  S  R  K  S  C  K  S  D  E  N  R  W  E  N  S  *  I  Q  S  S  H  Q  S  S  S  N  I  I  T  I  F  *  P  C  N  F  *  L  P  S  S  H  *  K  S  T  S  S  T  K  *  *  V  A  R  W  P  N  L  L  S  F  A  K  F  T  K  A  K  I  S  Q  K  K  G  Q  V  C  K  *  S  S  E  K  E  G  Q  V  C  K  *  *  S  I  S  K  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2439" stop="2110"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNIPTMGNCIVLQEKVVKVMKTDGKILEYKAPIKVHQILSQFSNHVISNSHQVIENQHLQPNDELLGGQIYYLLPSLPKPKSAKKKVKFANDQVKKKVKFANDDQLVNDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="38807" PGL_stop="38495"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38807" e_stop="38495"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="38807" e_stop="38495" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38807" stop="38495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGGAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACTGTCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATGTTCTTTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCCTATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAATTCTAC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  E  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  D  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  P  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  I  L  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  L  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  L  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  L  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  F  Y </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  G  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  C  Q  V  H  T  *  G  L  K  P  R  Y  H  T  H  L  G  I  M  F  F  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0094P20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="56844" PGL_stop="57020"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56844" e_stop="57020"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="56844" e_stop="57020" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56844" stop="57020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGACACCAAACTCTATCACACATGCGCGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  T  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  R  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  F  R  *  G  *  E  A  I  P  M  D  T  K  L  Y  H  T  C  A  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0094P20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="58320" PGL_stop="61030"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58320" e_stop="61030"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="58320" e_stop="61030" e_length="2711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58320" stop="59032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58840" stop="59498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58909" stop="59666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59136" stop="59678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59312" stop="59642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59523" stop="60959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60598" stop="61030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAACCCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTATATCAGTGTATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATAAATGCAGCAGGGGCATTCGTAAGGCCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATCTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCAAAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCGTTTCTTAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATTGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCGGGCAGATCTGCAGGGAACACATCTCGAAACTCACGGACAACCGAAACTGACTTAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATATGAAAATGTAGATCCAGGGTCAAACAATACAAAAGCCATGCAATCACAAACCGAAAGATTACCTGTGATGACAGCATCAGATGTCTCCGCCTCCGATCTCCCAGGGAAAGCATAACAATGGGCTCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTTCCCATCACCCCGGCCGTTTTGGTGAGCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTAGGATAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAATCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCAGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTATCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTAGTTGTCATGGTGAAGTCATCTGGCTTTACTCCCTCTACCTCTATCACGAAGTCTACCACTTCTTGAAAAGATTTCGCTATAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGATCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCATTTTCCTATCCCTCAAGGTCTGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATATCCAATAAGGCATCCATACGATGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGGCCTTGATCAGATAACCCGCTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACAACCTCTTCCACGGCCTCTTGCCGCTACTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  T  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  Y  Q  C  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  A  H  K  C  S  R  G  I  R  K  A  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  L  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  Q  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  V  S  *  Q  L  L  K  L  G  F  *  L  P  *  L  R  G  S  H  S  I  R  G  Y  R  N  W  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  G  Q  I  C  R  E  H  I  S  K  L  T  D  N  R  N  *  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  H  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  *  K  C  R  S  R  V  K  Q  Y  K  S  H  A  I  T  N  R  K  I  T  C  D  D  S  I  R  C  L  R  L  R  S  P  R  E  S  I  T  M  G  S  F  V  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  F  P  I  T  P  A  V  L  V  S  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  R  I  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  I  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  Q  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  S  C  H  G  E  V  I  W  L  Y  S  L  Y  L  Y  H  E  V  Y  H  F  L  K  R  F  R  Y  S  R  Y  L  *  G  *  N  P  Q  L  *  S  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  H  F  P  I  P  Q  G  L  R  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  I  Q  *  G  I  H  T  M  S  H  S  G  C  M  L  Y  L  *  N  W  R  C  W  C  R  K  H  W  R  C  L  A  L  I  R  *  P  A  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  S  T  A  S  C  R  Y  S   </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  P  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  V  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  I  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  K  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  F  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  I  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  L  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  K  A  M  Q  S  Q  T  E  R  L  P  V  M  T  A  S  D  V  S  A  S  D  L  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  F  P  S  P  R  P  F  W  *  A  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  *  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  S  S  E  D  *  M  G  R  T  E  *  P  P  E  P  Y  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  V  V  M  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  *  K  D  F  A  I  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  I  F  L  S  L  K  V  *  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  K  A  S  I  R  *  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  Q  P  L  P  R  P  L  A  A  T  L  </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  N  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  S  S  *  M  Q  Q  G  H  S  *  G  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  S  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  K  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  R  F  L  T  T  L  E  V  G  L  L  T  P  L  T  P  R  E  P  F  Y  K  G  V  *  K  L  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  R  A  D  L  Q  G  T  H  L  E  T  H  G  Q  P  K  L  T  *  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  M  K  M  *  I  Q  G  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  S  P  P  P  I  S  Q  G  K  H  N  N  G  L  F  R  L  F  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  S  H  H  P  G  R  F  G  E  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  *  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  N  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  P  I  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  *  L  S  W  *  S  H  L  A  L  L  P  L  P  L  S  R  S  L  P  L  L  E  K  I  S  L  *  P  L  P  V  R  L  K  S  A  T  L  I  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  R  S  E  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  Y  P  I  R  H  P  Y  D  E  P  *  W  L  H  V  V  P  L  K  L  E  V  L  V  Q  K  T  L  E  V  P  G  L  D  Q  I  T  R  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  H  S  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  N  L  F  H  G  L  L  P  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58485" stop="58823"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVYQCIINKYDHKEIQIWLKNPVHQAHKCSRGIRKAKRHHYKFVMPIPGSKSSLWHIRCPYLQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59443" stop="59703"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKFTKQDLYTFSTTTDSPTGVETRIGISSNSQCKFRPLANEEDTYENVDPGSNNTKAMQSQTERLPVMTASDVSASDLPGKA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59751" stop="60005"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSFPITPAVLVSTITSTTTSSRITASTMTTSTSSYWGSITLFRIIPPNMSSLPTSITLSRIKHRSLREVLTGLRWTPNYSQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59047" stop="59292"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEIGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDLIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60807" stop="61028"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISENLIDHLWGRLGWQFLILHLFILPILPFSYYFLSRWRSHCPSIRWARCSSSSPRGRPPTTSSTASCRYS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60169" stop="60381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFAIAATCKAEIRNSDLNPFTKRRIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSIFLSLKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="60336" PGL_stop="58939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60336" e_stop="60150"/>
            <exon e_start="59405" e_stop="58939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.930"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="60336" e_stop="60150" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60149" i_stop="59406" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.925">
            <gDNA_exon_boundary e_start="59405" e_stop="58939" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60336" stop="60150"/>
              <exon start="59405" stop="58939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGATCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTATAGCGAAATCTTTTCAAGAAGTGGTAGACTTC : GATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTAAGTCAGTTTCGGTTGTCCGTGAGTTTCGAGATGTGTTCCCTGCAGATCTGCCCGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCAATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGGGAGTTAAAAGCCCAACTTCAAGAGTTGTTAAGAAACGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTT</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  I  R  V  A  D  F  S  L  T  G  S  G  Y  S  E  I  F  S  R  S  G  R  L   : R  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  S  F  G  C  P  *  V  S  R  C  V  P  C  R  S  A  R  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  N  F  Y  T  P  L  *  N  G  S  R  G  V  K  G  V  K  S  P  T  S  R  V  V  K  K  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  I  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  M  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  K  S  V  S  V  V  R  E  F  R  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  R  N  G  F  I  R  P  S  A  S  P  W  G  A  P  V   </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  D  Q  S  C  G  F  Q  P  Y  R  *  R  L  *  R  N  L  F  K  K  W  *  T  S :   M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  W  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  Q  F  R  L  S  V  S  F  E  M  C  S  L  Q  I  C  P  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  Q  F  L  Y  P  L  I  E  W  L  P  R  S  *  G  S  *  K  P  N  F  K  S  C  *  E  T  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60335" stop="60150"/>
                    <exon start="59405" stop="58941"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAAIAKSFQEVVDFDVILGMTWLSPQFAILDCNAKMVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIKSVSVVREFRDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLRNGFIRPSASPWGAPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="60963" PGL_stop="60410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60963" e_stop="60410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="60963" e_stop="60410" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60963" stop="60410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGCGGGTTATCTGATCAAGGCCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCAGTTTCAGAGGTACAACATGCAGCCACTATGGCTCATCGTATGGATGCCTTATTGGATATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCGGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  E  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  R  V  I  *  S  R  P  G  T  S  S  V  F  C  T  N  T  S  S  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  Y  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  G  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  H  R  M  D  A  L  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  A  G  Y  L  I  K  A  R  H  L  Q  C  F  L  H  Q  H  L  Q  F  Q  R  Y  N  M  Q  P  L  W  L  I  V  W  M  P  Y  W  I  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  R  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60962" stop="60411"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDTRAVTPPPTEEVIREGEDGENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAHRMDALLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="84625" PGL_stop="80852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84625" e_stop="84134"/>
            <exon e_start="83964" e_stop="83850"/>
            <exon e_start="83151" e_stop="83086"/>
            <exon e_start="82987" e_stop="82899"/>
            <exon e_start="82692" e_stop="82605"/>
            <exon e_start="82409" e_stop="82263"/>
            <exon e_start="82168" e_stop="82076"/>
            <exon e_start="81840" e_stop="81739"/>
            <exon e_start="81465" e_stop="80852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.786" e_score="1.000"/>
          <exon-intron don_prob="0.897" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84625" e_stop="84134" e_length="492"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="84133" i_stop="83965" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83964" e_stop="83850" e_length="115"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.910">
            <gDNA_intron_boundary i_start="83849" i_stop="83152" i_length="698"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83151" e_stop="83086" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="83085" i_stop="82988" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82987" e_stop="82899" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.912">
            <gDNA_intron_boundary i_start="82898" i_stop="82693" i_length="206"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="82692" e_stop="82605" e_length="88"/>
          </exon>
          <intron i_serial="5" don_prob="0.821" acc_prob="0.786">
            <gDNA_intron_boundary i_start="82604" i_stop="82410" i_length="195"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82409" e_stop="82263" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.897" acc_prob="0.987">
            <gDNA_intron_boundary i_start="82262" i_stop="82169" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82168" e_stop="82076" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="82075" i_stop="81841" i_length="235"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="81840" e_stop="81739" e_length="102"/>
          </exon>
          <intron i_serial="8" don_prob="0.978" acc_prob="0.980">
            <gDNA_intron_boundary i_start="81738" i_stop="81466" i_length="273"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="81465" e_stop="80852" e_length="614"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84625" stop="84134"/>
              <exon start="83964" stop="83850"/>
              <exon start="83151" stop="83086"/>
              <exon start="82987" stop="82899"/>
              <exon start="82692" stop="82605"/>
              <exon start="82409" stop="82374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82407" stop="82263"/>
              <exon start="82168" stop="82076"/>
              <exon start="81840" stop="81739"/>
              <exon start="81465" stop="80852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAACTTTCTCTCTCTAAAAACTCACTCACTGGACTTCGTTCGTTGTCCGAATTTCAAGGCCATTAGTAGAGCAGAAGCAGTTATTTGACCGAGTCTCTCTCTCAATGGAAGTCGAAACTACCGGCGTGTCAAATTTTGATCTCAACAACTCTTCATCTCAGGTTAGTTCTCTTCCTCCGTATCGAAAACTCATCGACATGTCGGGTTGTAAACTGACGGAGCTCCGTATTCCCGATTTTCGGAGCTCCGACGACATGCCGGAACTCGAAGGATTCGGTTCGCCGGTTTCTGCCGGTGTAGAGTGTGAAAACGGTATGGTTTCGTTTCCGGCGTCTCCTTCTGTATCTGAAAATGTAGGCCAGGAACGTGATTTTACTGAGTCCGTTGAAAAGACGCCGTCGAATGCCGCGAAGAGATTGCAGAAAGTTTATCGGAGTTATCGTACACGGCGTATGTTAGCTGACTCTGCTGTGGTAGCTGAAGAGCTTTG : GTGGCAAGCAATAGATTATGCTCGGTTGAATCATAGTACAATTTCATTCTTCGATTACTCGAAGCCGGAGACGGCGGTTTCACGGTGGAATCGCGTCGGCTTGAATGCTTCCAAG : GTTGGTAAAGGTTTATCCAAAGATGCTGAAGCTCAGACGTTAGCTTTTCAACACTGGATTGAGGCT : ATTGATCCACGCCATCGATATGGACATAACATGCATATCTATTATGAAGAATGGTGTAAAACTGATGCTGGTCAGCCCTTCTTCTTTTG : GTTGGATCTTGGAGATGGCAGAAAGGTTGATCTCAAAGAATGTCCAAGAGCTAAGCTTCAGAAACAATGCATAAAGTATCTTGGACCT : CAAGAAAGACAACATTATGAGTACATAATTGCTGGCGGGCAGATACTGCATAAGCTAACCAGAACTTCTCTTGACACAACTAAAGGCCCCGAAGGGGCAAAATGGATCTTTGTGATGAGCACATCAAAAAGACTATATGCTGGTGAG : AAAAAGAAAGGAATGTTTCATCATTCCAGTTTTCTGGCTGGTGGGGCTGCTTTAGCTGCTGGAAGACTAGTGGTACAGGATGGAACAGTGAAG : TCTATTTCACCTTACAGTGGCCATTATCGGCCATCAGATGATAGCCTCGATACCTTTTTATCAATTCTCAAGGAACACGGAGTCAACGTGGATGAAGTTGAG : ATAAAAAAGGCAAGTGAAGACTATGACACCTCCACAGATGTAAATATAAAATCTATTGACAAACGTCCGCCAAAACTTTCAACTCCTCCACCATCAGTGGAAGAAGAGAAGCAAGTGCATTCCACAGAATCAATTGGATCACCACAAGCTGCAACAAGTCCAACTTGCTGCTACCAGAGAACGCTCTCAGGCGGCCTTCACAGCCCGCGAACAGAAGTACCAAAGACTGCTATACTAGAAAGGATCAATTCGAAGAAATCTTCAAGATCCTATCAACTAGGCCATCAACTATCTCGAGTCTGGTCAACAGGCGCCGGCCCAAGAATTGGCTGCATTGCTGATTACCCTGCTGAACTAAGATGGCAAGCCTTGGAACTAACTAATGTTTCACCTAAACCTTCTCCATCATCAACTCCTAGACCTTTAGACGCTCTTTGTTCGCCTACTTGTTCTTCCCCAGTTTTCAACAATGTACTTGTCAAGTCTTCTTGAATTCGAATCTTTGTTTTCTTAAATTCCATGTTCCTGCTGCAATATTACTCTAGCAAATGTAAATGCCTTTGTTCTTCAGTTATTTGTACTTCCTAACATTCGAGTATGAGTTATGTCCTCGC</gDNA_template>
            <first_frame> Y  N  F  L  S  L  K  T  H  S  L  D  F  V  R  C  P  N  F  K  A  I  S  R  A  E  A  V  I  *  P  S  L  S  L  N  G  S  R  N  Y  R  R  V  K  F  *  S  Q  Q  L  F  I  S  G  *  F  S  S  S  V  S  K  T  H  R  H  V  G  L  *  T  D  G  A  P  Y  S  R  F  S  E  L  R  R  H  A  G  T  R  R  I  R  F  A  G  F  C  R  C  R  V  *  K  R  Y  G  F  V  S  G  V  S  F  C  I  *  K  C  R  P  G  T  *  F  Y  *  V  R  *  K  D  A  V  E  C  R  E  E  I  A  E  S  L  S  E  L  S  Y  T  A  Y  V  S  *  L  C  C  G  S  *  R  A  L  :  V  A  S  N  R  L  C  S  V  E  S  *  Y  N  F  I  L  R  L  L  E  A  G  D  G  G  F  T  V  E  S  R  R  L  E  C  F  Q   : G  W  *  R  F  I  Q  R  C  *  S  S  D  V  S  F  S  T  L  D  *  G   : Y  *  S  T  P  S  I  W  T  *  H  A  Y  L  L  *  R  M  V  *  N  *  C  W  S  A  L  L  L  L  :  V  G  S  W  R  W  Q  K  G  *  S  Q  R  M  S  K  S  *  A  S  E  T  M  H  K  V  S  W  T   : S  R  K  T  T  L  *  V  H  N  C  W  R  A  D  T  A  *  A  N  Q  N  F  S  *  H  N  *  R  P  R  R  G  K  M  D  L  C  D  E  H  I  K  K  T  I  C  W  *   : E  K  E  R  N  V  S  S  F  Q  F  S  G  W  W  G  C  F  S  C  W  K  T  S  G  T  G  W  N  S  E   : V  Y  F  T  L  Q  W  P  L  S  A  I  R  *  *  P  R  Y  L  F  I  N  S  Q  G  T  R  S  Q  R  G  *  S  *   : D  K  K  G  K  *  R  L  *  H  L  H  R  C  K  Y  K  I  Y  *  Q  T  S  A  K  T  F  N  S  S  T  I  S  G  R  R  E  A  S  A  F  H  R  I  N  W  I  T  T  S  C  N  K  S  N  L  L  L  P  E  N  A  L  R  R  P  S  Q  P  A  N  R  S  T  K  D  C  Y  T  R  K  D  Q  F  E  E  I  F  K  I  L  S  T  R  P  S  T  I  S  S  L  V  N  R  R  R  P  K  N  W  L  H  C  *  L  P  C  *  T  K  M  A  S  L  G  T  N  *  C  F  T  *  T  F  S  I  I  N  S  *  T  F  R  R  S  L  F  A  Y  L  F  F  P  S  F  Q  Q  C  T  C  Q  V  F  L  N  S  N  L  C  F  L  K  F  H  V  P  A  A  I  L  L  *  Q  M  *  M  P  L  F  F  S  Y  L  Y  F  L  T  F  E  Y  E  L  C  P  R </first_frame>
            <second_frame>  T  T  F  S  L  *  K  L  T  H  W  T  S  F  V  V  R  I  S  R  P  L  V  E  Q  K  Q  L  F  D  R  V  S  L  S  M  E  V  E  T  T  G  V  S  N  F  D  L  N  N  S  S  S  Q  V  S  S  L  P  P  Y  R  K  L  I  D  M  S  G  C  K  L  T  E  L  R  I  P  D  F  R  S  S  D  D  M  P  E  L  E  G  F  G  S  P  V  S  A  G  V  E  C  E  N  G  M  V  S  F  P  A  S  P  S  V  S  E  N  V  G  Q  E  R  D  F  T  E  S  V  E  K  T  P  S  N  A  A  K  R  L  Q  K  V  Y  R  S  Y  R  T  R  R  M  L  A  D  S  A  V  V  A  E  E  L  W :   W  Q  A  I  D  Y  A  R  L  N  H  S  T  I  S  F  F  D  Y  S  K  P  E  T  A  V  S  R  W  N  R  V  G  L  N  A  S  K  :  V  G  K  G  L  S  K  D  A  E  A  Q  T  L  A  F  Q  H  W  I  E  A  :  I  D  P  R  H  R  Y  G  H  N  M  H  I  Y  Y  E  E  W  C  K  T  D  A  G  Q  P  F  F  F  W :   L  D  L  G  D  G  R  K  V  D  L  K  E  C  P  R  A  K  L  Q  K  Q  C  I  K  Y  L  G  P  :  Q  E  R  Q  H  Y  E  Y  I  I  A  G  G  Q  I  L  H  K  L  T  R  T  S  L  D  T  T  K  G  P  E  G  A  K  W  I  F  V  M  S  T  S  K  R  L  Y  A  G  E  :  K  K  K  G  M  F  H  H  S  S  F  L  A  G  G  A  A  L  A  A  G  R  L  V  V  Q  D  G  T  V  K  :  S  I  S  P  Y  S  G  H  Y  R  P  S  D  D  S  L  D  T  F  L  S  I  L  K  E  H  G  V  N  V  D  E  V  E  :  I  K  K  A  S  E  D  Y  D  T  S  T  D  V  N  I  K  S  I  D  K  R  P  P  K  L  S  T  P  P  P  S  V  E  E  E  K  Q  V  H  S  T  E  S  I  G  S  P  Q  A  A  T  S  P  T  C  C  Y  Q  R  T  L  S  G  G  L  H  S  P  R  T  E  V  P  K  T  A  I  L  E  R  I  N  S  K  K  S  S  R  S  Y  Q  L  G  H  Q  L  S  R  V  W  S  T  G  A  G  P  R  I  G  C  I  A  D  Y  P  A  E  L  R  W  Q  A  L  E  L  T  N  V  S  P  K  P  S  P  S  S  T  P  R  P  L  D  A  L  C  S  P  T  C  S  S  P  V  F  N  N  V  L  V  K  S  S  *  I  R  I  F  V  F  L  N  S  M  F  L  L  Q  Y  Y  S  S  K  C  K  C  L  C  S  S  V  I  C  T  S  *  H  S  S  M  S  Y  V  L   </second_frame>
            <third_frame>   Q  L  S  L  S  K  N  S  L  T  G  L  R  S  L  S  E  F  Q  G  H  *  *  S  R  S  S  Y  L  T  E  S  L  S  Q  W  K  S  K  L  P  A  C  Q  I  L  I  S  T  T  L  H  L  R  L  V  L  F  L  R  I  E  N  S  S  T  C  R  V  V  N  *  R  S  S  V  F  P  I  F  G  A  P  T  T  C  R  N  S  K  D  S  V  R  R  F  L  P  V  *  S  V  K  T  V  W  F  R  F  R  R  L  L  L  Y  L  K  M  *  A  R  N  V  I  L  L  S  P  L  K  R  R  R  R  M  P  R  R  D  C  R  K  F  I  G  V  I  V  H  G  V  C  *  L  T  L  L  W  *  L  K  S  F   : G  G  K  Q  *  I  M  L  G  *  I  I  V  Q  F  H  S  S  I  T  R  S  R  R  R  R  F  H  G  G  I  A  S  A  *  M  L  P  R :   L  V  K  V  Y  P  K  M  L  K  L  R  R  *  L  F  N  T  G  L  R  L :   L  I  H  A  I  D  M  D  I  T  C  I  S  I  M  K  N  G  V  K  L  M  L  V  S  P  S  S  F   : G  W  I  L  E  M  A  E  R  L  I  S  K  N  V  Q  E  L  S  F  R  N  N  A  *  S  I  L  D  L :   K  K  D  N  I  M  S  T  *  L  L  A  G  R  Y  C  I  S  *  P  E  L  L  L  T  Q  L  K  A  P  K  G  Q  N  G  S  L  *  *  A  H  Q  K  D  Y  M  L  V  R :   K  R  K  E  C  F  I  I  P  V  F  W  L  V  G  L  L  *  L  L  E  D  *  W  Y  R  M  E  Q  *  S :   L  F  H  L  T  V  A  I  I  G  H  Q  M  I  A  S  I  P  F  Y  Q  F  S  R  N  T  E  S  T  W  M  K  L  R :   *  K  R  Q  V  K  T  M  T  P  P  Q  M  *  I  *  N  L  L  T  N  V  R  Q  N  F  Q  L  L  H  H  Q  W  K  K  R  S  K  C  I  P  Q  N  Q  L  D  H  H  K  L  Q  Q  V  Q  L  A  A  T  R  E  R  S  Q  A  A  F  T  A  R  E  Q  K  Y  Q  R  L  L  Y  *  K  G  S  I  R  R  N  L  Q  D  P  I  N  *  A  I  N  Y  L  E  S  G  Q  Q  A  P  A  Q  E  L  A  A  L  L  I  T  L  L  N  *  D  G  K  P  W  N  *  L  M  F  H  L  N  L  L  H  H  Q  L  L  D  L  *  T  L  F  V  R  L  L  V  L  P  Q  F  S  T  M  Y  L  S  S  L  L  E  F  E  S  L  F  S  *  I  P  C  S  C  C  N  I  T  L  A  N  V  N  A  F  V  L  Q  L  F  V  L  P  N  I  R  V  *  V  M  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84606" stop="84134"/>
                    <exon start="83964" stop="83850"/>
                    <exon start="83151" stop="83086"/>
                    <exon start="82987" stop="82899"/>
                    <exon start="82692" stop="82605"/>
                    <exon start="82409" stop="82263"/>
                    <exon start="82168" stop="82076"/>
                    <exon start="81840" stop="81739"/>
                    <exon start="81465" stop="80974"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1662</number_coding_nucleotides>
                  <number_encoded_amino_acids>554</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLTHWTSFVVRISRPLVEQKQLFDRVSLSMEVETTGVSNFDLNNSSSQVSSLPPYRKLIDMSGCKLTELRIPDFRSSDDMPELEGFGSPVSAGVECENGMVSFPASPSVSENVGQERDFTESVEKTPSNAAKRLQKVYRSYRTRRMLADSAVVAEELWWQAIDYARLNHSTISFFDYSKPETAVSRWNRVGLNASKVGKGLSKDAEAQTLAFQHWIEAIDPRHRYGHNMHIYYEEWCKTDAGQPFFFWLDLGDGRKVDLKECPRAKLQKQCIKYLGPQERQHYEYIIAGGQILHKLTRTSLDTTKGPEGAKWIFVMSTSKRLYAGEKKKGMFHHSSFLAGGAALAAGRLVVQDGTVKSISPYSGHYRPSDDSLDTFLSILKEHGVNVDEVEIKKASEDYDTSTDVNIKSIDKRPPKLSTPPPSVEEEKQVHSTESIGSPQAATSPTCCYQRTLSGGLHSPRTEVPKTAILERINSKKSSRSYQLGHQLSRVWSTGAGPRIGCIADYPAELRWQALELTNVSPKPSPSSTPRPLDALCSPTCSSPVFNNVLVKSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="93236" PGL_stop="93622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93236" e_stop="93622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="93236" e_stop="93622" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93236" stop="93622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344985" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGCAATGATGCAGAGCGAAAACTCTGTTGAAGATTCGCTTCATATCCGCAAGCTGGAGGTTACTGATAAAGAAAAAGGCTTTATTGAATTGCTGAGACAATTGACTGTCTGTGATTCTGTTTCGGACGAGAGATTTAAGGAGAGATTTGAAGAAATCGCGAAATATGGGGATGATCATTGTATTTGTGTGATCGAAGATGTTCGATTAGGGAAGATTGTTGCTACTGGAAGTGTGTTTATTGAGAAGAAGTTTGTGAGGAATTGTGGTAAAGCTGGACATATTGAGGATGTTGTGGTCGATTCGAGTGCTCGTGGGATGCAATTAGGTAAGAGAATTGTTGAATATCTTGCTCATCATGCTCATTCAATGGGGTGTTATAAGGTAA</gDNA_template>
            <first_frame> G  Q  *  C  R  A  K  T  L  L  K  I  R  F  I  S  A  S  W  R  L  L  I  K  K  K  A  L  L  N  C  *  D  N  *  L  S  V  I  L  F  R  T  R  D  L  R  R  D  L  K  K  S  R  N  M  G  M  I  I  V  F  V  *  S  K  M  F  D  *  G  R  L  L  L  L  E  V  C  L  L  R  R  S  L  *  G  I  V  V  K  L  D  I  L  R  M  L  W  S  I  R  V  L  V  G  C  N  *  V  R  E  L  L  N  I  L  L  I  M  L  I  Q  W  G  V  I  R  * </first_frame>
            <second_frame>  G  N  D  A  E  R  K  L  C  *  R  F  A  S  Y  P  Q  A  G  G  Y  *  *  R  K  R  L  Y  *  I  A  E  T  I  D  C  L  *  F  C  F  G  R  E  I  *  G  E  I  *  R  N  R  E  I  W  G  *  S  L  Y  L  C  D  R  R  C  S  I  R  E  D  C  C  Y  W  K  C  V  Y  *  E  E  V  C  E  E  L  W  *  S  W  T  Y  *  G  C  C  G  R  F  E  C  S  W  D  A  I  R  *  E  N  C  *  I  S  C  S  S  C  S  F  N  G  V  L  *  G   </second_frame>
            <third_frame>   A  M  M  Q  S  E  N  S  V  E  D  S  L  H  I  R  K  L  E  V  T  D  K  E  K  G  F  I  E  L  L  R  Q  L  T  V  C  D  S  V  S  D  E  R  F  K  E  R  F  E  E  I  A  K  Y  G  D  D  H  C  I  C  V  I  E  D  V  R  L  G  K  I  V  A  T  G  S  V  F  I  E  K  K  F  V  R  N  C  G  K  A  G  H  I  E  D  V  V  V  D  S  S  A  R  G  M  Q  L  G  K  R  I  V  E  Y  L  A  H  H  A  H  S  M  G  C  Y  K  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93238" stop="93621"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMMQSENSVEDSLHIRKLEVTDKEKGFIELLRQLTVCDSVSDERFKERFEEIAKYGDDHCICVIEDVRLGKIVATGSVFIEKKFVRNCGKAGHIEDVVVDSSARGMQLGKRIVEYLAHHAHSMGCYKV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="95236" PGL_stop="94644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95236" e_stop="94644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95236" e_stop="94644" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95236" stop="94644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327583" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTATCAAATATATATGCATCTAACAATAAATGGGACGATTCAGAAAAGATCAGGTCGTCTATGAACGAAAGAAGAATGCAGAAGATACCTGCATATAGTTGGATAGAGATTGATGGAATAGTTCATGAGTTTCTTGTTGGAGATACATACCATCCAATATCAGATAACATATACGTCAAACTCGGTGAACTGAGCAAGGAGCTAAGAGAGGTAGGTTATGTTCCAAGAACAGAATACGTTCTATTTGACATCGAAGAGGAGGAGAAGGAGCATTTCGTGGGGTGTCATAGTGAGAAGCTCGCGCTTGCATATGGCTTACTAAGTACGAAACCTGGTGATGGTATCAGGATAATAAAGAATCTTCGTATCTGTGGTGATTGCCATACGTTCTTCAAGCTTGTCTCAATGATAACGGGGAGAGAAATTATCTTACGAGATAATAACCGTTTCCATTGTTTCCTTGAAGGTTCATGCTCTTGTGGCGATTACTGGTAAGACTTCAGTTGGTAATATGATGTTGCAGAAGAGAATTGAGGCCAATTGGTGCCATTCCCTTATGCAAGAATAGATAGACCTAATATTTATCTTTCA</gDNA_template>
            <first_frame> I  Y  Q  I  Y  M  H  L  T  I  N  G  T  I  Q  K  R  S  G  R  L  *  T  K  E  E  C  R  R  Y  L  H  I  V  G  *  R  L  M  E  *  F  M  S  F  L  L  E  I  H  T  I  Q  Y  Q  I  T  Y  T  S  N  S  V  N  *  A  R  S  *  E  R  *  V  M  F  Q  E  Q  N  T  F  Y  L  T  S  K  R  R  R  R  S  I  S  W  G  V  I  V  R  S  S  R  L  H  M  A  Y  *  V  R  N  L  V  M  V  S  G  *  *  R  I  F  V  S  V  V  I  A  I  R  S  S  S  L  S  Q  *  *  R  G  E  K  L  S  Y  E  I  I  T  V  S  I  V  S  L  K  V  H  A  L  V  A  I  T  G  K  T  S  V  G  N  M  M  L  Q  K  R  I  E  A  N  W  C  H  S  L  M  Q  E  *  I  D  L  I  F  I  F   </first_frame>
            <second_frame>  F  I  K  Y  I  C  I  *  Q  *  M  G  R  F  R  K  D  Q  V  V  Y  E  R  K  K  N  A  E  D  T  C  I  *  L  D  R  D  *  W  N  S  S  *  V  S  C  W  R  Y  I  P  S  N  I  R  *  H  I  R  Q  T  R  *  T  E  Q  G  A  K  R  G  R  L  C  S  K  N  R  I  R  S  I  *  H  R  R  G  G  E  G  A  F  R  G  V  S  *  *  E  A  R  A  C  I  W  L  T  K  Y  E  T  W  *  W  Y  Q  D  N  K  E  S  S  Y  L  W  *  L  P  Y  V  L  Q  A  C  L  N  D  N  G  E  R  N  Y  L  T  R  *  *  P  F  P  L  F  P  *  R  F  M  L  L  W  R  L  L  V  R  L  Q  L  V  I  *  C  C  R  R  E  L  R  P  I  G  A  I  P  L  C  K  N  R  *  T  *  Y  L  S  F  </second_frame>
            <third_frame>   L  S  N  I  Y  A  S  N  N  K  W  D  D  S  E  K  I  R  S  S  M  N  E  R  R  M  Q  K  I  P  A  Y  S  W  I  E  I  D  G  I  V  H  E  F  L  V  G  D  T  Y  H  P  I  S  D  N  I  Y  V  K  L  G  E  L  S  K  E  L  R  E  V  G  Y  V  P  R  T  E  Y  V  L  F  D  I  E  E  E  E  K  E  H  F  V  G  C  H  S  E  K  L  A  L  A  Y  G  L  L  S  T  K  P  G  D  G  I  R  I  I  K  N  L  R  I  C  G  D  C  H  T  F  F  K  L  V  S  M  I  T  G  R  E  I  I  L  R  D  N  N  R  F  H  C  F  L  E  G  S  C  S  C  G  D  Y  W  *  D  F  S  W  *  Y  D  V  A  E  E  N  *  G  Q  L  V  P  F  P  Y  A  R  I  D  R  P  N  I  Y  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95234" stop="94740"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSNIYASNNKWDDSEKIRSSMNERRMQKIPAYSWIEIDGIVHEFLVGDTYHPISDNIYVKLGELSKELREVGYVPRTEYVLFDIEEEEKEHFVGCHSEKLALAYGLLSTKPGDGIRIIKNLRICGDCHTFFKLVSMITGREIILRDNNRFHCFLEGSCSCGDYW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="102558" PGL_stop="96833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102558" e_stop="102286"/>
            <exon e_start="101504" e_stop="100733"/>
            <exon e_start="100656" e_stop="100598"/>
            <exon e_start="99235" e_stop="98750"/>
            <exon e_start="98196" e_stop="98158"/>
            <exon e_start="97376" e_stop="96833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.946" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="0.825" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.261" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102558" e_stop="102286" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.946" acc_prob="0.847">
            <gDNA_intron_boundary i_start="102285" i_stop="101505" i_length="781"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101504" e_stop="100733" e_length="772"/>
          </exon>
          <intron i_serial="2" don_prob="0.825" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100732" i_stop="100657" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100656" e_stop="100598" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.261">
            <gDNA_intron_boundary i_start="100597" i_stop="99236" i_length="1362"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="99235" e_stop="98750" e_length="486"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.927">
            <gDNA_intron_boundary i_start="98749" i_stop="98197" i_length="553"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98196" e_stop="98158" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="98157" i_stop="97377" i_length="781"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="97376" e_stop="96833" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102558" stop="102286"/>
              <exon start="101504" stop="101186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101262" stop="100733"/>
              <exon start="100656" stop="100598"/>
              <exon start="99235" stop="98750"/>
              <exon start="98196" stop="98158"/>
              <exon start="97376" stop="96833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTAGTGAAAATACTGAAGATTCTGGTACACCAATAAGCTCAAATAGGATCGCTCAGAAGTATGTGAATCTTACTATTGGTGGCATCCCCGTCAGTAAACGATTATATGAATCAGCAGCAGTTGCTAATGCTGCAGAGCTATTTAAGCTCATCTTTCTCTGTAGCTCAAAATCTCCACTTGTGCCAACCTTGCTTGCTGAAACTTTAAGGCGCTATTCTGAGCATGATCTTTTTGCTGCTTTCAACTACCTCAGGGAGAAAAAAGTTTTG : ATTGGTGGTCATTCCAATTGTCCTTTTGTCCTTTCTCAAACCTTCTTGAATTGTATAGAATTTTCTCCATTCCCAAGTGATACCGGAAAAAGAGCTGCTAAGTTTGCTAGCTGGCTTTGTGAAAGAGAGAAGGAATTGATTGCTGAGGGGGTGGATCTTCCAACAGATTTGCAGTGTGGAGATGTTTACCACCTTCTTGCTCTGCTTTCTTCAGGAGAACTATCTATTGCACCATGCCTACCCGATGAAGGTGTTGGAGAGGTTGAGGACTCCCGGACATCTAAACGCAAGAATGATGACAGTGAATTTTCTGACAGTGACAGGTATAAAAAGCTGAAAACTTCAATGGCCAGTGATAGTGAGCTTTGCTCACGCCGGGCAAAAGGTTTCCCAGGAATTAGGTTGTGCTTGAGGCATGCTACACTTCCAAGAATAAAAATTATGGATTTACTCAAAGACAGTGATAACTATACTTGTGCACAATCTGTTAAAGATCATCAAGCCACTGATATTGGCAGTGTCTCATTCGACTCAGATGACCAAGTAAATGAACTTCATGATAGTGGGGTCCCATATACCGCAGTTTCTCCGACCGAGTCACCATGGCAAGCCATGACGACCTATGCTCAACGTGTTTGTTTCTTTGGTTCTTGTGTGGAACAGAACTCTCTGGTATATCCGGAAATGTTTAGATCTGTTTATTCAGCTATCCAAGTGGCTGGTGACCAAGGTTTGTGCATGAAAGATATCTCAAGGATTCTAAAGATGCAAG : ATAAAAAGCTTTCTGAAGCTGTCATTGAGGTGCTAGAAGCATTTGGACGAGTTGTGAAG : GTCAATGCTTACGATTCTATTCGGGTGGTTGATTCTTTATATCGTTCCAAGTACTTTTTGATTCCAGTGGCTGCTATTCATGAAGATGCTACGTCATCTCCTTGTGAAGATTCCAAGGCTAAAACAGATGAGGAGTCTGCTACACATAATGGAGAAAATCATAAAGATGTGGAGTTGCAGAAGGAAATACGTGGGAATTCTGATAAGGTACACAAAGTCACGATTCTTAATCTTCCTAAAGCGGTTGTTGAACCTTCAAGGGAAAAGCAAACCATCAATGAGGCAAAAGGTTGTCGGCCTACTGAAGCTAGTTCACCCACAAAAAATCACCCAGAAGAACCATATGATCTCCGCTCTACTGGTTTGCATTTGTGTAAGCCAATATTGCCTTGGCTAAATGGTGATGGTACTACAAATGAACGTGTCTACAAGGGGCTTGTACGCCGTGTTCTTGGCATAGTGATGCAAAATCCGGGAATAAAAGAG : GGTGATATTATCTGCCACATGCATGTTCTGAATCCTCAG : AGTTGCAGAAGTTTGTTAAACATGATGGTCCTGGATAACGTTATCTTTTCGCGTAAGATTCCTCAGGCAAATCCAAGCGGAGCACCAACAATTCTGAGTAGTCTTATTGGTAGCCATTTCAAGAAACCAAAGTTAGTTTCAAGGGAACATTTCTTTGCAAACCCCTCCAGTACACACCTGTTGTAATGTAGGTAGATGTTGGATCTAGTTATTTATTTGTTTTTGATCTTTTCGTCCTCTTGGTTCGTGTTTGGGACTAAGGCATAGTAGTTGTTGTTGTCATCTCCTCCTGCTCATCTTTGTATAGTAATTTCTCTAGGAAAAAATTGCACAACTTATGCCCGTCCGATGCAGAATCATATGTAAATGTAATTTAATAGATTTTCAAAAATCCTACTACAAGTTATTATTAACCTGTGGTTGTTATATTAGCTAGAAAAATGTTCAATTAGGAAATTAAAATACATTATTTTCACATTTACTATTTTGTACAACATGAATTTTAGTTATATACAGTAGTACGGGTACAAATAATTAGAGTTGG</gDNA_template>
            <first_frame> N  F  S  E  N  T  E  D  S  G  T  P  I  S  S  N  R  I  A  Q  K  Y  V  N  L  T  I  G  G  I  P  V  S  K  R  L  Y  E  S  A  A  V  A  N  A  A  E  L  F  K  L  I  F  L  C  S  S  K  S  P  L  V  P  T  L  L  A  E  T  L  R  R  Y  S  E  H  D  L  F  A  A  F  N  Y  L  R  E  K  K  V  L  :  I  G  G  H  S  N  C  P  F  V  L  S  Q  T  F  L  N  C  I  E  F  S  P  F  P  S  D  T  G  K  R  A  A  K  F  A  S  W  L  C  E  R  E  K  E  L  I  A  E  G  V  D  L  P  T  D  L  Q  C  G  D  V  Y  H  L  L  A  L  L  S  S  G  E  L  S  I  A  P  C  L  P  D  E  G  V  G  E  V  E  D  S  R  T  S  K  R  K  N  D  D  S  E  F  S  D  S  D  R  Y  K  K  L  K  T  S  M  A  S  D  S  E  L  C  S  R  R  A  K  G  F  P  G  I  R  L  C  L  R  H  A  T  L  P  R  I  K  I  M  D  L  L  K  D  S  D  N  Y  T  C  A  Q  S  V  K  D  H  Q  A  T  D  I  G  S  V  S  F  D  S  D  D  Q  V  N  E  L  H  D  S  G  V  P  Y  T  A  V  S  P  T  E  S  P  W  Q  A  M  T  T  Y  A  Q  R  V  C  F  F  G  S  C  V  E  Q  N  S  L  V  Y  P  E  M  F  R  S  V  Y  S  A  I  Q  V  A  G  D  Q  G  L  C  M  K  D  I  S  R  I  L  K  M  Q   : D  K  K  L  S  E  A  V  I  E  V  L  E  A  F  G  R  V  V  K  :  V  N  A  Y  D  S  I  R  V  V  D  S  L  Y  R  S  K  Y  F  L  I  P  V  A  A  I  H  E  D  A  T  S  S  P  C  E  D  S  K  A  K  T  D  E  E  S  A  T  H  N  G  E  N  H  K  D  V  E  L  Q  K  E  I  R  G  N  S  D  K  V  H  K  V  T  I  L  N  L  P  K  A  V  V  E  P  S  R  E  K  Q  T  I  N  E  A  K  G  C  R  P  T  E  A  S  S  P  T  K  N  H  P  E  E  P  Y  D  L  R  S  T  G  L  H  L  C  K  P  I  L  P  W  L  N  G  D  G  T  T  N  E  R  V  Y  K  G  L  V  R  R  V  L  G  I  V  M  Q  N  P  G  I  K  E  :  G  D  I  I  C  H  M  H  V  L  N  P  Q  :  S  C  R  S  L  L  N  M  M  V  L  D  N  V  I  F  S  R  K  I  P  Q  A  N  P  S  G  A  P  T  I  L  S  S  L  I  G  S  H  F  K  K  P  K  L  V  S  R  E  H  F  F  A  N  P  S  S  T  H  L  L  *  C  R  *  M  L  D  L  V  I  Y  L  F  L  I  F  S  S  S  W  F  V  F  G  T  K  A  *  *  L  L  L  S  S  P  P  A  H  L  C  I  V  I  S  L  G  K  N  C  T  T  Y  A  R  P  M  Q  N  H  M  *  M  *  F  N  R  F  S  K  I  L  L  Q  V  I  I  N  L  W  L  L  Y  *  L  E  K  C  S  I  R  K  L  K  Y  I  I  F  T  F  T  I  L  Y  N  M  N  F  S  Y  I  Q  *  Y  G  Y  K  *  L  E  L  </first_frame>
            <second_frame>  I  L  V  K  I  L  K  I  L  V  H  Q  *  A  Q  I  G  S  L  R  S  M  *  I  L  L  L  V  A  S  P  S  V  N  D  Y  M  N  Q  Q  Q  L  L  M  L  Q  S  Y  L  S  S  S  F  S  V  A  Q  N  L  H  L  C  Q  P  C  L  L  K  L  *  G  A  I  L  S  M  I  F  L  L  L  S  T  T  S  G  R  K  K  F  * :   L  V  V  I  P  I  V  L  L  S  F  L  K  P  S  *  I  V  *  N  F  L  H  S  Q  V  I  P  E  K  E  L  L  S  L  L  A  G  F  V  K  E  R  R  N  *  L  L  R  G  W  I  F  Q  Q  I  C  S  V  E  M  F  T  T  F  L  L  C  F  L  Q  E  N  Y  L  L  H  H  A  Y  P  M  K  V  L  E  R  L  R  T  P  G  H  L  N  A  R  M  M  T  V  N  F  L  T  V  T  G  I  K  S  *  K  L  Q  W  P  V  I  V  S  F  A  H  A  G  Q  K  V  S  Q  E  L  G  C  A  *  G  M  L  H  F  Q  E  *  K  L  W  I  Y  S  K  T  V  I  T  I  L  V  H  N  L  L  K  I  I  K  P  L  I  L  A  V  S  H  S  T  Q  M  T  K  *  M  N  F  M  I  V  G  S  H  I  P  Q  F  L  R  P  S  H  H  G  K  P  *  R  P  M  L  N  V  F  V  S  L  V  L  V  W  N  R  T  L  W  Y  I  R  K  C  L  D  L  F  I  Q  L  S  K  W  L  V  T  K  V  C  A  *  K  I  S  Q  G  F  *  R  C  K  :  I  K  S  F  L  K  L  S  L  R  C  *  K  H  L  D  E  L  *  R :   S  M  L  T  I  L  F  G  W  L  I  L  Y  I  V  P  S  T  F  *  F  Q  W  L  L  F  M  K  M  L  R  H  L  L  V  K  I  P  R  L  K  Q  M  R  S  L  L  H  I  M  E  K  I  I  K  M  W  S  C  R  R  K  Y  V  G  I  L  I  R  Y  T  K  S  R  F  L  I  F  L  K  R  L  L  N  L  Q  G  K  S  K  P  S  M  R  Q  K  V  V  G  L  L  K  L  V  H  P  Q  K  I  T  Q  K  N  H  M  I  S  A  L  L  V  C  I  C  V  S  Q  Y  C  L  G  *  M  V  M  V  L  Q  M  N  V  S  T  R  G  L  Y  A  V  F  L  A  *  *  C  K  I  R  E  *  K  R :   V  I  L  S  A  T  C  M  F  *  I  L  R :   V  A  E  V  C  *  T  *  W  S  W  I  T  L  S  F  R  V  R  F  L  R  Q  I  Q  A  E  H  Q  Q  F  *  V  V  L  L  V  A  I  S  R  N  Q  S  *  F  Q  G  N  I  S  L  Q  T  P  P  V  H  T  C  C  N  V  G  R  C  W  I  *  L  F  I  C  F  *  S  F  R  P  L  G  S  C  L  G  L  R  H  S  S  C  C  C  H  L  L  L  L  I  F  V  *  *  F  L  *  E  K  I  A  Q  L  M  P  V  R  C  R  I  I  C  K  C  N  L  I  D  F  Q  K  S  Y  Y  K  L  L  L  T  C  G  C  Y  I  S  *  K  N  V  Q  L  G  N  *  N  T  L  F  S  H  L  L  F  C  T  T  *  I  L  V  I  Y  S  S  T  G  T  N  N  *  S  W </second_frame>
            <third_frame>   F  *  *  K  Y  *  R  F  W  Y  T  N  K  L  K  *  D  R  S  E  V  C  E  S  Y  Y  W  W  H  P  R  Q  *  T  I  I  *  I  S  S  S  C  *  C  C  R  A  I  *  A  H  L  S  L  *  L  K  I  S  T  C  A  N  L  A  C  *  N  F  K  A  L  F  *  A  *  S  F  C  C  F  Q  L  P  Q  G  E  K  S  F   : D  W  W  S  F  Q  L  S  F  C  P  F  S  N  L  L  E  L  Y  R  I  F  S  I  P  K  *  Y  R  K  K  S  C  *  V  C  *  L  A  L  *  K  R  E  G  I  D  C  *  G  G  G  S  S  N  R  F  A  V  W  R  C  L  P  P  S  C  S  A  F  F  R  R  T  I  Y  C  T  M  P  T  R  *  R  C  W  R  G  *  G  L  P  D  I  *  T  Q  E  *  *  Q  *  I  F  *  Q  *  Q  V  *  K  A  E  N  F  N  G  Q  *  *  *  A  L  L  T  P  G  K  R  F  P  R  N  *  V  V  L  E  A  C  Y  T  S  K  N  K  N  Y  G  F  T  Q  R  Q  *  *  L  Y  L  C  T  I  C  *  R  S  S  S  H  *  Y  W  Q  C  L  I  R  L  R  *  P  S  K  *  T  S  *  *  W  G  P  I  Y  R  S  F  S  D  R  V  T  M  A  S  H  D  D  L  C  S  T  C  L  F  L  W  F  L  C  G  T  E  L  S  G  I  S  G  N  V  *  I  C  L  F  S  Y  P  S  G  W  *  P  R  F  V  H  E  R  Y  L  K  D  S  K  D  A  R :   *  K  A  F  *  S  C  H  *  G  A  R  S  I  W  T  S  C  E   : G  Q  C  L  R  F  Y  S  G  G  *  F  F  I  S  F  Q  V  L  F  D  S  S  G  C  Y  S  *  R  C  Y  V  I  S  L  *  R  F  Q  G  *  N  R  *  G  V  C  Y  T  *  W  R  K  S  *  R  C  G  V  A  E  G  N  T  W  E  F  *  *  G  T  Q  S  H  D  S  *  S  S  *  S  G  C  *  T  F  K  G  K  A  N  H  Q  *  G  K  R  L  S  A  Y  *  S  *  F  T  H  K  K  S  P  R  R  T  I  *  S  P  L  Y  W  F  A  F  V  *  A  N  I  A  L  A  K  W  *  W  Y  Y  K  *  T  C  L  Q  G  A  C  T  P  C  S  W  H  S  D  A  K  S  G  N  K  R   : G  *  Y  Y  L  P  H  A  C  S  E  S  S   : E  L  Q  K  F  V  K  H  D  G  P  G  *  R  Y  L  F  A  *  D  S  S  G  K  S  K  R  S  T  N  N  S  E  *  S  Y  W  *  P  F  Q  E  T  K  V  S  F  K  G  T  F  L  C  K  P  L  Q  Y  T  P  V  V  M  *  V  D  V  G  S  S  Y  L  F  V  F  D  L  F  V  L  L  V  R  V  W  D  *  G  I  V  V  V  V  V  I  S  S  C  S  S  L  Y  S  N  F  S  R  K  K  L  H  N  L  C  P  S  D  A  E  S  Y  V  N  V  I  *  *  I  F  K  N  P  T  T  S  Y  Y  *  P  V  V  V  I  L  A  R  K  M  F  N  *  E  I  K  I  H  Y  F  H  I  Y  Y  F  V  Q  H  E  F  *  L  Y  T  V  V  R  V  Q  I  I  R  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0094P20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102558" stop="102286"/>
                    <exon start="101504" stop="100733"/>
                    <exon start="100656" stop="100598"/>
                    <exon start="99235" stop="98750"/>
                    <exon start="98196" stop="98158"/>
                    <exon start="97376" stop="97191"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1812</number_coding_nucleotides>
                  <number_encoded_amino_acids>604</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFSENTEDSGTPISSNRIAQKYVNLTIGGIPVSKRLYESAAVANAAELFKLIFLCSSKSPLVPTLLAETLRRYSEHDLFAAFNYLREKKVLIGGHSNCPFVLSQTFLNCIEFSPFPSDTGKRAAKFASWLCEREKELIAEGVDLPTDLQCGDVYHLLALLSSGELSIAPCLPDEGVGEVEDSRTSKRKNDDSEFSDSDRYKKLKTSMASDSELCSRRAKGFPGIRLCLRHATLPRIKIMDLLKDSDNYTCAQSVKDHQATDIGSVSFDSDDQVNELHDSGVPYTAVSPTESPWQAMTTYAQRVCFFGSCVEQNSLVYPEMFRSVYSAIQVAGDQGLCMKDISRILKMQDKKLSEAVIEVLEAFGRVVKVNAYDSIRVVDSLYRSKYFLIPVAAIHEDATSSPCEDSKAKTDEESATHNGENHKDVELQKEIRGNSDKVHKVTILNLPKAVVEPSREKQTINEAKGCRPTEASSPTKNHPEEPYDLRSTGLHLCKPILPWLNGDGTTNERVYKGLVRRVLGIVMQNPGIKEGDIICHMHVLNPQSCRSLLNMMVLDNVIFSRKIPQANPSGAPTILSSLIGSHFKKPKLVSREHFFANPSSTHLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 60 chains have been computed
$ 
$ memory statistics:
$ 38432 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2135 bytes was the average size of a spliced alignment
$ 16560 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1656 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 74 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:01:21
-->
