<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 14:43:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320781" ref_strand="+" ref_description="SGN-U320781        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | alkaline phytoceramidase family / aPHC family, contains Pfam profile: PF05875: alkaline phytoceramidase (aPHC) | chr4:11797617-11799868 FORWARD | Aliases: T10I14.160, T10I14_160(evalue: 2e-119, score=426) genbank/nr: gi|18415901|ref|NP_567660.1| (AtCES1) Acyl-CoA independent ceramide synthase [Arabidopsis thaliana] gi|14488266|dbj|BAB60897.1| Acyl-CoA independent ceramide synthase [Arabidopsis thaliana] gi|30793847|gb|AAP40376.1| unknown protein [Arabidopsis thaliana] gi|30794039|gb|AAP40465.1| unknown protein [Arabidopsis thaliana](evalue: 2e-117, score=426)">
      <seq>gaaagcgagagagagagaggagagagaaagcgagagagaggagagagagatcttgtgtgtgtttatatatgtatatgcacacacatatatatattcaaagaagcaaatctgtgggaatattttttggggtggaatttggaaattggatctgacgttgaaagattgcagaatggaagatggcatattcttttggggccctgtaacatctaaagagtggtgtgagccaaattatgtgcagtcatcctatattgcagaattcttcaacaccatttcaaatatcccatgcattctcttggctcttattggtcttgtcaacgcccttagacaacggtttgagaaaaggttcagtgtccttcatatgtcaaacataatacttgccttggggagtatgacatatcatgccactttgcggcagatgcaacagcaaggtgatgagacaccaatggtctgggagatgcttctgtatatctatatcctctattcaccagattggcattatcggagtacgatgcccacctttctgttcctttatggtgcgctctttgccattgtgcattcacagcttcgctttggcattggtttcaaagtacactacgcacttttgtgccttctttgcgctcctcgtgcatataagtattacattcatacagaagacacattggctaagcgcctcgcaaagttatacgtggcaactttgttggtcggagctgcttgctggctatgtgatcgattattctgcaagcagattcagggctggtacattaatccacagggccatgcagtctggcacgtcttaatgggcttcaactcgtactttgcaaatgcattcttgatgtattgccgtgctcagcaacgtgaatggaatcccaaaatcaagcacttgttcggttttttcccctatgtgaagattgagaaaccgaaaacccagtagcagaagtcgcttctctttcgagcttagcctgtaataccccaaacatgtgcaggatatggctttggtgagcacaaagcaagcactcagcaatttttttctcttttcccattttgcagaatgtattgtaaatgaaagtctggaatagtttcgactctcgaccgaatattggttaatttttgactgtacaattagtggttttccagtgtaccatattttacactcccacagaagatgacatggattaactagttgaattcttttttctggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnnngggggggggggggcccccccccctcccccccctaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="+" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="2463" stop="85235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2760" g_stop="2921" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2922" i_stop="5180" i_length="2259">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5181" g_stop="5436" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="417" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5437" i_stop="6837" i_length="1401">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6838" g_stop="7618" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="1197" r_length="780" r_score="0.999"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7619" i_stop="8338" i_length="720">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.449" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8339" g_stop="8388" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1198" r_stop="1247" r_length="50" r_score="0.540"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8389" i_stop="9911" i_length="1523">
            <donor d_prob="0.000" d_score="0.54"/>
            <acceptor a_prob="0.938" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9912" g_stop="9947" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1248" r_stop="1283" r_length="36" r_score="0.528"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9948" i_stop="10466" i_length="519">
            <donor d_prob="0.942" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10467" g_stop="10481" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1284" r_stop="1298" r_length="15" r_score="0.467"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10482" i_stop="10758" i_length="277">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.867" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10759" g_stop="10773" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1299" r_stop="1313" r_length="15" r_score="0.400"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="+" ref_id="SGN-U320781" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>1315</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2760" e_stop="2921"/>
          <exon e_start="5181" e_stop="5436"/>
          <exon e_start="6838" e_stop="7618"/>
          <exon e_start="8339" e_stop="8388"/>
          <exon e_start="9912" e_stop="9947"/>
          <exon e_start="10467" e_stop="10481"/>
          <exon e_start="10759" e_stop="10773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAGCGAGAGAGAGAGGAGAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAGGTTTGTTTTTGTATTTTTCTGAATTTTTTCTTAGTATAAATAGAAGATTGCGTATGCATATTTTGCTTTTTGATATGTTGCTAATTTGTGTTTTGTGGAGAATTTTGGTTTATTTGTGGGATCTAATGGTGATAGGTTGGTTTACATTATGAGGGTGTTTTTTTGATATGGGAATAGTGTTAATGGTGATATTGTAGTTTGAATTAAGCAGTGTAGGGATTTGTGGGTGGTTTAATGGGGTAAAAAACGGATCTTTGGAGTTGGGTTTTGTTGATTGTTGAATTATTTGTGGGTTTGGTGGAAATTTGATCGAGTTTTGTATTTAGGGGTGTTTGTTGGAGAGGATTGATGATATCTGGTGTACATGCCCAGTTTGGATTAGTTGAGCTGGCAGTATAAATGAAAATTGAAAACAATTAAGGTTGAGATTGTAGCTGAAAGATGGGTTTTAGATTAAGCAGTAGGAGAGTATAGTTGTTATCGTCTGCACCTGTGGTTGTGTGCTGTAAGAGATAGTCGAGGTGGGTGCAAGTTGGGATAATCACCACCACAGTCTTAATTGAAAAACAAATAAAAAAACAGAAAGGTTCGAAATTGTAGCTGAAGATGGGTGTTTAGATAGGACTGCTTGGTATATTTTGTGTGTGGGGGTGGGGGGTGGGGGGGAATGCTTGATAGCTCATGATAATTTTGATGATGGGTTTCACACATTAATTCAAGTGAGTTTGACTTTGTGGAACTTCAAGGTTTCACACATTATTAATTCGTGAAAGAGACGAATAAGTTCTCTTGAATCTAACTTGTTGAGTTAATGGTTTGTGGCAAAGCTTCCTTCTTAGATTTTTTTGAGGAACAGTTAGTCTAGGAAGTGTTGTATTGAAGTAGTTTCTCGAAGTGGAAGTATTTGTGTCATGCTTTTGGCTTGACTTTCTTTTTTTGTATCATAATTAATTAAATTAGTTTTTAGGTGTTTGTTGTACATTCAATCAATTCAACTATAAGCACCTGCTGGATCTTTTCATCTAAGAATTGAAAGAATAAGCCCTTTGTTTTTCAACAAATTGTAGGAAGGTTCATTTTTGTCTTTTGCTACTACCTTTGTTGGTACAGTGGTCACTATGGAATTTTCTAATTGTATCAGTCCTTTATTGTACACTATTCTTAATGGTTTGTACCCACTTCTGGTGCATATGGAAAATGGATAGACTTTCTTTTTTGTTTGTACTGAAACTGAAAATTTAGCAATTTTACTTAAAAGTTGGTGGTAGTGTTTCTTGGGAGAAAGCATCAAGCAAATATCAACCTCTATGCAGGTATAATAGTTCAGCAATATATTTGATCTTCCCACTGGAATTGATATCATCCGGTCTTCTATGGGAGCAAATATGTTTCAGTTTTTAGTGGATATATTTTTTTTAAAAGAAATCTGCATTGGAAAAGAATGAGATTTGTCAATTAATTTTTTGATAAGGAGAAATAAGTATGCATACTTCATATTTACTCCATTTGTGACCCACTTTAGGGACATAAGTTTCAATCTAGCCAATTTTGTGTGTGATATTTAATCTCAGAATGTTGATTGCCAAAGTCACGTGAAGTTAATATGAGATAGAGAGTATGAAAGAGCTAGACATAAAGAACAAGAAGTTATTCGAGATCAAACTCAAGCATTCACGGCATTTTTAGACCTGAGGCAAAATTTTAAGGATTGTCGATAATTTCCTGAAGTTAACATTAAAGAAGTGTCACTTAAACAGCCATGCGCACTAGTATAACGTTTACACAGAGATCCTGTGTTCCAGTGTCATGTGGATAACGCGACTCATTTTGGTCTCGAGTTCTTCGGTCCCTGCTCTCTCTCCTTTTTTAGTTTCATGTTGTGCCCATTCTGTGATTCATCCTAGATCATTGTTTCTGTGCATAGTATTTGTATAGAAGATTATAATCGGTAGTGTGGCAACTTTTTAGTTCATACACATGTAATATTGCTGATTATCATCCTTCTAAGGATATATTTAGAAAATTTGAATCTCTTTAATTAATCCTTAACTATTGAGACATGCTAAAATGCTTGAGTAATTTTCTTGCATCAAAACTGCTAGCTAAGTTGCTCGGACTCTCCTAAAATGTTGTGGCACTTGTGTTGGATCCTTTAGAAATGCACCACTTTTGAGGGGTCTGACACACACCCGATGACATTTTTGAAGAGTCCGAGCAATGTAGACTGCAAGTGCCTACAAGCTGACTTTTTCAGGATAGATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGATGTAAGCATTCTCTCCATTCTCTATGTTGGATTCTCTGTAAAATTTGTTAGGTGTACAATAGACATGTATGTATGTATGTGTTAATCATCATTTGTTTGCTAAGGTACGAGGAAATTGACTCAATAGGATGCTCGATAGCCTCATTTTTTGAGATGTTTATATTGTTAAATCTCTGTAGAACTATATGAGAACAGGAAGATGGTAAACTGAAGATATTATATCATGCGTGCTAATGTGATTACAACTATCCCCTACTTTATGCAAATGAGCACTTGTATCTTGACCTATCAGCCAATCTATGCTTGCTTAGACTCTTCACAAATGTCACCATACTGTGTCGGATCCTCCAAAAATGCATTACTGAATGGCCCGAGACACACCTTTTGATATTTTGAAGAGTCTGAGCAACTTAGCAGCCAATAATCTCCTGCTGGAATGAGGTCACTGCCTTCCGTGCCCCACCCCCCTTCTTGTATGATTTTTCTATGGTCATGTTTTTTTTATAGACTGAATCTGTTAGAGAATACACAGGTAGAAGATTTGGAATTTTTCTTATTTTCTTGTATATTGGTATCTGAAGTATTGACTTGTGAAGTTTGAGTTCGTTGCAATCACAACGTCATCTAATCTGTTTCGCCACTACCTTTCTTTTGAAAAATTGATTGGCATATTTCTTGTAGATGAGCACAAATTGCATACTTTTTCAGTTTATGGGTAGGATGATCCTATCTATTGTTCAAGCCACAACTCAATATTCCAAACTCCTAGTTACTGATTCTTGAAAACTATAGAAGTGCCAAAGCTAATTCTGGTTTTCAAAAAGATAGTGGGAAAGAGGAGCACAAGGATGCATGGTTTGATCCTGTCAAGAAGTTTTTAGTGCATTGAGTAATAATCTCCATGACAGAAATAGTGATAGACCAACTGATTTGAGTCATTTTAAGAAAGTCTATGTCAAATATGCCATAACAATGTCTTGGTATTTCTATATAATTCTAATTTCCAATAAAGCAAAATCTCAGTCAGCCACATAAACAAATCCCCTCCCGACTTCTGACTTCGATGTAATTAGTTGGGACGGGAAGGTTTCACTTGTAAAGATATTGACAGTTTTGGTTCTGTGAAAGTGTCTTGTTATTTATGTCGTGTTCCCAGATGGAAAATATTTGTAATGGAGCAGCATTACAACATAAAGCTTACTGTGAATCATATACCAAGTGCCACCTTCAGTATGCCTTGTGCCTCTTGCTTTTTTGTTACGGCCCTTCATACTTTCAAATAAGGGCTTCTCTATGCATGCTTGCAGACAACAGTGATGAAACTAATCGTCCTTGAAAATACTGCCTGCTTTTAAGTGTCCTGTTATTGTTTTATACTATGATTCATGTATTAAATTGTCAGGCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCATTCTTGATGTATTGCCGTGCTCAGCAACGTGAATGGAATCCCAAAATCAAGCACTTGTTCGGTTTTTTCCCCTATGTGAAGATTGAGAAACCGAAAACCCAGTAGCAGAAGTCGCTTCTCTTTCGAGCTTAGCCTGTAATACCCCAAACATGTGCAGGATATGGCTTTGGTGAGCACAAAGCAAGCACTCAGCAATTTTTTTTCTCTTTTCCCATTTTGCAGAATGTATTGTAAATGAAAGTCTGGAATAGTTTCGACTCTCGACCGAATATTGGTTAATTTTTGACTGTACAATTAGTGGTTTTCCAGTGTACCATATTTTACACTCCCACAGAAGATGACATGGATTAACTAGTTGAATTCTTTTTTCTGGTAAGTTTTTGTCTAACTCTTGAAAATTTGCAAATATGTTTTGCTGCTACATGGTGGTTTGTATAGTTCATGTAGCTGCTCAGTCTGATACAGCTTTAGACCCCTTTTCACACCCTATGGTCATTGTAAAAATTCTGTTATACTATTGTCACCAATCAGTTGATTTGAATCACTTGCAAAAGTCATCGTTGACACTATAAATGATGTGAAGTCGAATTGAAGAGTGATTTTTATTATCTTCTGTCCATAATTGTCATAAGAGGACACTATGAACTTACAGGACCAAGAGTTCTGGCTTTATTACTTTCATTTACCCTATTCGGTGTCTTTTCAATTATCTTAATTATTGTAATTGAAATGTGAATTTATTTTTCGGATAACTAAAATATTATGTTTTTGTTTCATATAATAATGTTCAAGGACAAATTGATAATTCAACTTTAAGCTAATATATATGATATTTTAAATAAATACCTCAATCAGTAGTCATAGTATTGTTTATCTAGTTTCTTGTCCTTCTATAAATTTGTTTCTTGTACCTCGATAATTGTATTGTTTTGGCGTAGTTCTCGTTCTATTAATATCAGTTAATTTTGTTATAATCTGATTTGTGTACTTCCGTTATTTTTTTTTTTCGAAATTTTTTTTTCCTAAGCCAATCAAGATGTCTATCGAATTTATAAATCATTTTTTTTCAACATCCAACTAATTATGACTTAGGACAGATAAATTGAAACGAGATAGAAAATCGAAATAATTATTCAAATAGAGTAGCATAAATTAACACATGTTATTAATTAATTATATATCTACATATAAATATGAACAATATTATTCTTAATAAACTCCAGTCTGATACTTTGCTTCACAAAATTCTCCTCCAAGATCATCACAAGCTTCTGATAAGAATACACTGCATGAAAAAAAAAAATTAACCAAAATTACAACACTCCACATCAAATCAATTTTTTTGAAATTTCTATTTATGTCAAATCTAATGATATCACATATATTAAAACAAAAAAAATACGTACGTTTTTGGTTCGTTATAGGCAAGATATTCTCTATCTACACTCTCCATAGACAGAGTTTTGCTTGAGGGTGTAGATTTAGGTTTGGTTTCAGGATACATTTCAACATCACAAGTTTCTCCTCCTATTGTCTCACAAGCTTCAGCAGGAAACACTGATCTGAACATATTATTAAACATATTATAAGACTAACTCTAAAGACTAAACAAAACTCTTTAACGACTACATTATAGATGTTATTATCTTGTTCTTATAAAATTAAACAAGTTATGGGTTAAATAGAAATCGAGTCTTACGAGTTCATGGAGCTATAGTCAACAGTAGAAGTGTCAATTGGAGTTGCTTTAATGTGAGTAATTTTGAGATGAGTTGAAACACATCTCAAAGGTGAAGTTGTTAAGGGCTTGGGTGGTTTTACTAGGGGAATAGATGTAAGAAACAAAGCTGCCTGCATTTTGAGATGTGATTAATTCAATTCAATTTGATTTATGTATGTACTAGCAAGTTTGATGTGTTTGATGGAGTAGTAGGACTTGTAATTTATAGGGCTTTGTATTGTGGTGAGTTTATTGAATGGATAAGGTGTGGAGAGATATTTTTGAAACTAGATAAGGTTTAATGGTTGATTTTGTTGGTTTTATTGGGAACTATTTGAAATGTATCGAAAATTTTATCGGAATATAATTTCATCTGTATCTTATGAATATATGTTTGACCATAAAATTTAATTAGATTTTGAAAAGATGATATCATATATTTTCAAATTTTCGAGCTAGTTTTTGATATTTCAATTCATAAAAGTTCTTTTTTCTATCAAATATAATGCATGTTCAAATATAATTTTAAATTCAAAAAATTAAACGTATGAAGTTTCAACTTCGAAATCTAAGAGTCGGAGACCATTGACCCAACATAGACTATAATTGTTGATAATTTGTCTTTCCTAATATGTTTGGTGCAAGAAACAAATAAGTTACGATCCTTGGTTTCATTCAATTGTTACTCCACGTATAATAATTATCTTCTTAATTTGTAATTAAGAAAATGACATATTTTTACTTCATAAAACTATTTATCTTAATCTTCATTTCATCTTATCCTCATTAACATTCAATTAAAATAGAAAAAAACATTTGTAACTCTCATTAACTTCATTTTAAAAAGACAAACATAGAACAAGTAGACACCACACAGGAAAATAAATCTGAGACATAAAGCATTTAACAGACTGATAATAATATAATCTGAAAATTGAACGACAGGAAAAAATATATCAAAAAAGCATAACGAGCATTGGGGCAAATCTAAACCTTTTCCATAAATTAAATGTGTGCACAGATTTGCTTGAGTAAATGGTATATTAAAGTAAAAAAATGAACATCTTTGTATACATAATTGATGTCATTGCTAAAATGAGACTTACAGTATACACAGAAGTAGCTAAGCTGAAATCAAAGGTGTATCTGGAGGCAAAACTGCAATCCAGTTCAAGCTTCTCCAACAAATGTAAGGTCAATATGTGGTATGAATCTCAAACGCAGCACTTTGAAAACGACGTGCTACTCAGCAGGTACCATATTCTATCGTCTGCTATAAAACTTCATCCAGATTGTATGAAGTAACGAAGAATCTAGTATATCAATCAACCTTATGTACATCTTATAAAGTTTCATGACTTGGATATTAGGAGAGCTAACCGTAGTTTACCAAGTCGATAGAGTTTGAATGGATTTTTGTATACTGTCACTACTCCTGTATTATTGGGCGATAAGAAAACATGGGCAATGCTAAAAGATTCACCCTTCTCAACCGCAAACTGCCATTCCCTTGCGGTAATATGGAACCAATCCTTTGTTGACGATCTAGTTGTCTTTATCTCTATGTATTCATCATCTCCCACGACAAGGTCATAAGGAAGCCCTGTTTCATTGGTTTCATTGACCCATTTCACAAAAGGCTCACCGAATTTCTCCAAGAAATATTTGAAAGCAAAATATTCTCCAAGTCTGCCAGTTTCAATCATAATGTCACTGTTGCCATTTGTGGCTGTATGCAGTTGATCTCTTTCAGTCACATCAGAAGAACTATTACTCGGGTTATGTGGTTCAGTCATGGCATGAGGAG</genome_strand>
        <mrna_strand>GAA-AGCGAGAGAGAGAGAGGAGAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCATTCTTGATGTATTGCCGTGCTCAGCAACGTGAATGGAATCCCAAAATCAAGCACTTGTTCGGTTTTTTCCCCTATGTGAAGATTGAGAAACCGAAAACCCAGTAGCAGAAGTCGCTTCTCTTTCGAGCTTAGCCTGTAATACCCCAAACATGTGCAGGATATGGCTTTGGTGAGCACAAAGCAAGCACTCAGCAA-TTTTTTTCTCTTTTCCCATTTTGCAGAATGTATTGTAAATGAAAGTCTGGAATAGTTTCGACTCTCGACCGAATATTGGTTAATTTTTGACTGTACAATTAGTGGTTTTCCAGTGTACCATATTTTACACTCCCACAGAAGATGACATGGATTAACTAGTTGAATTCTTTTTTCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAANNNNNGGGGGGGGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCCCCCCCCTCC.....................................................................................................................................................................................................................................................................................CCCCCCTAGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325149" ref_strand="+" ref_description="SGN-U325149        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | light responsive protein-related, similar to light regulated protein precursor SP:Q03200 (Oryza sativa) (Plant Mol. Biol. 22 (1), 165-170 (1993)), ccr protein GB:S52663 (Citrus X paradisi) (Plant Mol. Biol. 26 (1), 165-173 (1994)) | chr3:9829039-9829917 FORWARD | Aliases: MLJ15.9(evalue: 1e-20, score=95.9) genbank/nr: gi|493636|dbj|BAA06153.1| CR9 [Cucumis sativus] >gi|746031|prf||2016504A cytokinin-repressed protein CR9 (evalue: 3e-24, score=113)">
      <seq>gtacatacataaatcaaattgaattgaattaatcacatctcaaaatgcaggcagctttgtttcttacatctattcccctagtaaaaccacccaagcccttaacaacttcacctttgagatgtgtttcaactcatctcaaaattactcacattaaagcaactccaattgacacttctactgttgactatagctccatgaactcatcagtgtttcctgctgaagcttgtgagacaataggaggagaaacttgtgatgttgaaatgtatcctgaaaccaaacctaaatctacaccctcaagcaaaactctgtctatggagagtgtagatagagaatatcttgcctataacgaaccaaaaactgtattcttatcagaagcttgtgatgatcttggaggagaattttgtgaagcaaagtatcagactggagtttattaagaataatattgttcatatttatatgtagatatataattaattaataacatgtgttaatttatgctactctatttgaataattatttcgattttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="9447" stop="8060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9147" g_stop="8946" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8945" i_stop="8809" i_length="137">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8808" g_stop="8653" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="358" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8652" i_stop="8532" i_length="121">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8531" g_stop="8361" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="529" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8360" i_stop="8269" i_length="92">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.527" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8268" g_stop="8259" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="539" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U325149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9147" e_stop="8946"/>
          <exon e_start="8808" e_stop="8653"/>
          <exon e_start="8531" e_stop="8361"/>
          <exon e_start="8268" e_stop="8259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACATACATAAATCAAATTGAATTGAATTAATCACATCTCAAAATGCAGGCAGCTTTGTTTCTTACATCTATTCCCCTAGTAAAACCACCCAAGCCCTTAACAACTTCACCTTTGAGATGTGTTTCAACTCATCTCAAAATTACTCACATTAAAGCAACTCCAATTGACACTTCTACTGTTGACTATAGCTCCATGAACTCGTAAGACTCGATTTCTATTTAACCCATAACTTGTTTAATTTTATAAGAACAAGATAATAACATCTATAATGTAGTCGTTAAAGAGTTTTGTTTAGTCTTTAGAGTTAGTCTTATAATATGTTTAATAATATGTTCAGATCAGTGTTTCCTGCTGAAGCTTGTGAGACAATAGGAGGAGAAACTTGTGATGTTGAAATGTATCCTGAAACCAAACCTAAATCTACACCCTCAAGCAAAACTCTGTCTATGGAGAGTGTAGATAGAGAATATCTTGCCTATAACGAACCAAAAACGTACGTATTTTTTTTGTTTTAATATATGTGATATCATTAGATTTGACATAAATAGAAATTTCAAAAAAATTGATTTGATGTGGAGTGTTGTAATTTTGGTTAATTTTTTTTTTTCATGCAGTGTATTCTTATCAGAAGCTTGTGATGATCTTGGAGGAGAATTTTGTGAAGCAAAGTATCAGACTGGAGTTTATTAAGAATAATATTGTTCATATTTATATGTAGATATATAATTAATTAATAACATGTGTTAATTTATGCTACTCTATTTGAATAATTATTTCGATTTTCTATCTCGTTTCAATTTATCTGTCCTAAGTCATAATTAGTTGGATGTTGAAAAAAAATGATTTATAAATTCGATAGACATCTTGATTGGCTTAGGAAAAAAAAA</genome_strand>
        <mrna_strand>GTACATACATAAATCAAATTGAATTGAATTAATCACATCTCAAAATGCAGGCAGCTTTGTTTCTTACATCTATTCCCCTAGTAAAACCACCCAAGCCCTTAACAACTTCACCTTTGAGATGTGTTTCAACTCATCTCAAAATTACTCACATTAAAGCAACTCCAATTGACACTTCTACTGTTGACTATAGCTCCATGAACTC.........................................................................................................................................ATCAGTGTTTCCTGCTGAAGCTTGTGAGACAATAGGAGGAGAAACTTGTGATGTTGAAATGTATCCTGAAACCAAACCTAAATCTACACCCTCAAGCAAAACTCTGTCTATGGAGAGTGTAGATAGAGAATATCTTGCCTATAACGAACCAAAAAC.........................................................................................................................TGTATTCTTATCAGAAGCTTGTGATGATCTTGGAGGAGAATTTTGTGAAGCAAAGTATCAGACTGGAGTTTATTAAGAATAATATTGTTCATATTTATATGTAGATATATAATTAATTAATAACATGTGTTAATTTATGCTACTCTATTTGAATAATTATTTCGATTTTCT............................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333033" ref_strand="+" ref_description="SGN-U333033        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:7978944-7987554 FORWARD | Aliases: F18A5.140, F18A5_140(evalue: 6e-30, score=127) genbank/nr: gi|34148073|gb|AAQ62582.1| unknown [Glycine max] (evalue: 2e-31, score=139)">
      <seq>atgatggaagcatttgattctcctcatgccatgactgaaccacataacccgagtaatagttcttctgatgtgactgaaagagatcaactgcatacagccacaaatggcaacagtgacattatgattgaaactggcagacttggagaatattttgctttcaaatatttcttggagaaattcggtgagccttttgtgaaatgggtcaatgaaaccaatgaaacagggcttccttatgaccttgtcgtgggagatgatgaatacatagagataaagacaactagatcgtcaacaaaggattggttccatattaccgcaagggaatggcagtttgcggttgagaagggtgaatcttttagcattgcccatgttttcttatcgcccaataatacaggagtagtgacagtatacaaaaatccattcaaactctatcgacttggtaaactacggttagctctcctaatatccaagtcatgaaactttataagatgtacataaggttgattgatatactagattcttcgttacttcatacaatctggatgaagttttatagcagacgatagaatatggtacctgctgagtagcacgtcgttttcaaagtgctgcgtttgagattcataccacatattgaccttacatttgttggagaagcttgaactggattgcagttttgcctccagatacacctttgatttcagcttagctacttctgtgtatactgtaagtctcattttagcaatgacatcaattatgtatacaaagatgatcacttttttactttaatataccatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="11092" stop="9698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10792" g_stop="9998" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U333033" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10792" e_stop="9998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGGAAGCATTTGATTCTCCTCATGCCATGACTGAACCACATAACCCGAGTAATAGTTCTTCTGATGTGACTGAAAGAGATCAACTGCATACAGCCACAAATGGCAACAGTGACATTATGATTGAAACTGGCAGACTTGGAGAATATTTTGCTTTCAAATATTTCTTGGAGAAATTCGGTGAGCCTTTTGTGAAATGGGTCAATGAAACCAATGAAACAGGGCTTCCTTATGACCTTGTCGTGGGAGATGATGAATACATAGAGATAAAGACAACTAGATCGTCAACAAAGGATTGGTTCCATATTACCGCAAGGGAATGGCAGTTTGCGGTTGAGAAGGGTGAATCTTTTAGCATTGCCCATGTTTTCTTATCGCCCAATAATACAGGAGTAGTGACAGTATACAAAAATCCATTCAAACTCTATCGACTTGGTAAACTACGGTTAGCTCTCCTAATATCCAAGTCATGAAACTTTATAAGATGTACATAAGGTTGATTGATATACTAGATTCTTCGTTACTTCATACAATCTGGATGAAGTTTTATAGCAGACGATAGAATATGGTACCTGCTGAGTAGCACGTCGTTTTCAAAGTGCTGCGTTTGAGATTCATACCACATATTGACCTTACATTTGTTGGAGAAGCTTGAACTGGATTGCAGTTTTGCCTCCAGATACACCTTTGATTTCAGCTTAGCTACTTCTGTGTATACTGTAAGTCTCATTTTAGCAATGACATCAATTATGTATACAAAGATGTTCATTTTTTTACTTTAATATACCATTTAC</genome_strand>
        <mrna_strand>ATGATGGAAGCATTTGATTCTCCTCATGCCATGACTGAACCACATAACCCGAGTAATAGTTCTTCTGATGTGACTGAAAGAGATCAACTGCATACAGCCACAAATGGCAACAGTGACATTATGATTGAAACTGGCAGACTTGGAGAATATTTTGCTTTCAAATATTTCTTGGAGAAATTCGGTGAGCCTTTTGTGAAATGGGTCAATGAAACCAATGAAACAGGGCTTCCTTATGACCTTGTCGTGGGAGATGATGAATACATAGAGATAAAGACAACTAGATCGTCAACAAAGGATTGGTTCCATATTACCGCAAGGGAATGGCAGTTTGCGGTTGAGAAGGGTGAATCTTTTAGCATTGCCCATGTTTTCTTATCGCCCAATAATACAGGAGTAGTGACAGTATACAAAAATCCATTCAAACTCTATCGACTTGGTAAACTACGGTTAGCTCTCCTAATATCCAAGTCATGAAACTTTATAAGATGTACATAAGGTTGATTGATATACTAGATTCTTCGTTACTTCATACAATCTGGATGAAGTTTTATAGCAGACGATAGAATATGGTACCTGCTGAGTAGCACGTCGTTTTCAAAGTGCTGCGTTTGAGATTCATACCACATATTGACCTTACATTTGTTGGAGAAGCTTGAACTGGATTGCAGTTTTGCCTCCAGATACACCTTTGATTTCAGCTTAGCTACTTCTGTGTATACTGTAAGTCTCATTTTAGCAATGACATCAATTATGTATACAAAGATGATCACTTTTTTACTTTAATATACCATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331657" ref_strand="+" ref_description="SGN-U331657        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:7978944-7987554 FORWARD | Aliases: F18A5.140, F18A5_140(evalue: 1e-38, score=156) genbank/nr: gi|34148073|gb|AAQ62582.1| unknown [Glycine max] (evalue: 5e-48, score=193)">
      <seq>tcagccagtctggatttcagaacctgagatgtctacagattgttgttgttgaaaagttgttctacaggaatgttataagaagttcccacatagcatcgaagaaacagtttgagtgcagttgtctgctagagggaaacatcttgtatgccactcaagagtcagattctcactcaatattcatggagatttctcgtttgttatcttctggagctcccgacttgcatttggcgaactttcttcatatgatcacaactatggcagaatcaggttccaatgaggagcaaactgagtttttcattttgaatagccagaaaatgcccaagcttcctgaaagtgaatctgtttggtctctcgcaaatgtcccattgtcaacagatagtgagacaggggtgatgagttcttccagaacaattgatgagaaaaaccctgagaaaatcaagaagagaccgggtatcagctcaagctggccacctactgactggaaaactgctcctggttttcatcgatctagcgtgtgcatctcaaaaggaaaggcagacagttgcatccaatcggaaaataatactgtgggagaaagtgtaatgaaaacatgggcgctgactgcaactgggatgacgtgtgttgaaaatatggacaactatccagaatcagctgcagttgttctaggttcacaaagtgttgatcatgtacctggtaccatgatggaagcatttgattcttctcatgccatgactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="12287" stop="10455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11987" g_stop="11857" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11856" i_stop="11360" i_length="497">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11359" g_stop="10755" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="736" r_length="605" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U331657" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11987" e_stop="11857"/>
          <exon e_start="11359" e_stop="10755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCCAGTCTGGATTTCAGAACCTGAGATGTCTACAGATTGTTGTTGTTGAAAAGTTGTTCTACAGGAATGTTATAAGAAGTTCCCACATAGCATCGAAGAAACAGTTTGAGTGCAGTTGTCTGCTAGAGGTATTCTAATCACGACATCATCTATGGGTTTTTATATCCACTATTATATTACATATTACATACATGAGATGTTTGTGGAAAAGCTGTATGTTATTTGAATCTTCCTCAACTGTTTATGAAAAAAGGATATCTAATCTAATGGACTGGTTGAAATGTATTAAATGTAAGACCTCTTCCTATGCAGACCAAGACTAACACTTCTATATAGCGTTATACTATTGTTGAGTTATGACTCCTTCATGTTTTTTTGCGTGTTCTTCCTTTCAATTTCGGACTTTTTGTCTGAATCATAAATTTGTAAAACATGCCTGGTAGATCTCTTCATTTGTCTTCTCTTTTCCCAGTCTGGTTCATGGAGATCTAACATTATTAATGTATGTAACACTTAATTTTCGGACATGTCTACCTCTAATTGCCCGAATGTTTATTTGTGAAATCTCATTCCTTGTTAAAACGTAAAACAATGTATAGATAATTTATTTTTTCATTCTGTACAGGGAAACATCTTGTATGCCACTCAAGAGTCAGATTCTCACTCAATATTCATGGAGATTTCTCGTTTGTTATCTTCTGGAGCTCCCGACTTGCATTTGGCGAACTTTCTTCATATGATCACAACTATGGCAGAATCAGGTTCCAATGAGGAGCAAACTGAGTTTTTCATTTTGAATAGCCAGAAAATGCCCAAGCTTCCTGAAAGTGAATCTGTTTGGTCTCTCGCAAATGTCCCATTGTCAACAGATAGTGAGACAGGGGTGATGAGTTCTTCCAGAACAATTGATGAGAAAAACCCTGAGAAAATCAAGAAGAGACCGGGTATCAGCTCAAGCTGGCCACCTACTGACTGGAAAACTGCTCCTGGTTTTCATCGATCTAGCGTGTGCATCTCAAAAGGAAAGGCAGACAGTTGCATCCAATCGGAAAATAATACTGTGGGAGAAAGTGTAATGAAAACATGGGCGCTGACTGCAACTGGGATGACGTGTGTTGAAAATATGGACAACTATCCAGAATCAGCTGCAGTTGTTCTAGGTTCACAAGGTGTTGATCATGTACCTGGTACCATGATGGAAGCATTTGATTCTCCTCATGCCATGACTGA</genome_strand>
        <mrna_strand>TCAGCCAGTCTGGATTTCAGAACCTGAGATGTCTACAGATTGTTGTTGTTGAAAAGTTGTTCTACAGGAATGTTATAAGAAGTTCCCACATAGCATCGAAGAAACAGTTTGAGTGCAGTTGTCTGCTAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACATCTTGTATGCCACTCAAGAGTCAGATTCTCACTCAATATTCATGGAGATTTCTCGTTTGTTATCTTCTGGAGCTCCCGACTTGCATTTGGCGAACTTTCTTCATATGATCACAACTATGGCAGAATCAGGTTCCAATGAGGAGCAAACTGAGTTTTTCATTTTGAATAGCCAGAAAATGCCCAAGCTTCCTGAAAGTGAATCTGTTTGGTCTCTCGCAAATGTCCCATTGTCAACAGATAGTGAGACAGGGGTGATGAGTTCTTCCAGAACAATTGATGAGAAAAACCCTGAGAAAATCAAGAAGAGACCGGGTATCAGCTCAAGCTGGCCACCTACTGACTGGAAAACTGCTCCTGGTTTTCATCGATCTAGCGTGTGCATCTCAAAAGGAAAGGCAGACAGTTGCATCCAATCGGAAAATAATACTGTGGGAGAAAGTGTAATGAAAACATGGGCGCTGACTGCAACTGGGATGACGTGTGTTGAAAATATGGACAACTATCCAGAATCAGCTGCAGTTGTTCTAGGTTCACAAAGTGTTGATCATGTACCTGGTACCATGATGGAAGCATTTGATTCTTCTCATGCCATGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323815" ref_strand="+" ref_description="SGN-U323815        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribosomal protein L13 family protein, similar to putative ribosomal protein L13 GB:AAC07691 (Aquifex aeolicus) | chr3:283697-285744 REVERSE | Aliases: None(evalue: 3e-78, score=288) genbank/nr: gi|30678423|ref|NP_186828.2| ribosomal protein L13p family [Arabidopsis thaliana] gi|30678425|ref|NP_850494.1| ribosomal protein L13p family [Arabidopsis thaliana] gi|33589790|gb|AAQ22661.1| At1g01640 [Arabidopsis thaliana](evalue: 2e-76, score=288)">
      <seq>ttaaaccctagctaaccctcagctctaagtgtgaaaagaggaactgattattggagtgaagatggtgatgggtcagccatttagtggcaacatgaagaaagctcttgctggcataaaacgtatcaatttggaaggtctgagatggagagtgtttgatgccaaaggccaggtcctgggaaggctagcatcacagatatcaaccgtgattcaaggaaaagataaaccaacatacgcacctaaccgcgaagaaggtgatatgtgcattgtgctcaatgcaaaggacatttgtgtcactgggagaaaactcacggataagttctatcgatggcacactggttacataggccacctcaaggagaggagtctgaaagaccagatggctaaggatccaacagaagttattcgcaaagctgtcctgcgaatgctgccaagaaataagttgcgtgatgatagagatcggaaattgaggatttttaccaatgatgagcacccttttgctgacagacctctagagccgtatgtgatgcctcctagacaagttcgtgagctgcgccctcgtacaagacgagccatgattcgagctgaaaagaaagctgaacaacagcaacaaggtacaaacaatacaagtaaaagaaaaaagaacaaggatgtggaagaagaagcagtgagcacatgaaacatatgaaatttcgagtttggggtttattttccagccataacgcgatcttggggtgggtttcgagatgattgaaaattttttagtaccatattatgacttggaattttttttttttggttagtttgtttacatgtatttgtttttcacttttgggtgatgttatatttgcctggagatgaaccaggatagatgatacacttgagcattgttatttccatatgatgcaccaataatcccttttttttaagctctagttagtagttatttcatatataattactatatagttagtagagaatgtttaaaataattatatgtattcaatatagacaatttttgtttccttgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="33943" stop="30017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33643" g_stop="33615" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33614" i_stop="33355" i_length="260">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33354" g_stop="33287" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="97" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33286" i_stop="32053" i_length="1234">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32052" g_stop="31981" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="169" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31980" i_stop="31466" i_length="515">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31465" g_stop="31299" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="336" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31298" i_stop="31189" i_length="110">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31188" g_stop="31077" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="448" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31076" i_stop="30905" i_length="172">
            <donor d_prob="0.112" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30904" g_stop="30336" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="1017" r_length="569" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1027" polyA_stop="1050"/>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U323815" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1017</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33643" e_stop="33615"/>
          <exon e_start="33354" e_stop="33287"/>
          <exon e_start="32052" e_stop="31981"/>
          <exon e_start="31465" e_stop="31299"/>
          <exon e_start="31188" e_stop="31077"/>
          <exon e_start="30904" e_stop="30336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCCTAGCTAACCCTCAGCTCTAAGGTGAATTATTTTTTCCTCCATTTTCTTTGAATTGTTGTAAAAATTGTATTTTTCGGATCCATTTCTATGTTTTCAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAGAGTATGAATATTTGATCCTGATGAATACTAGATTGTTTTCATAGTATGTTATTTTTGTTTATTTTTTATAGTTGAAGAAATTTTGGATATGAGAAGTTGTGAAATGTGATTTTTTTTTTTTGACAATGTGAGATTGGTTTGTTTTGTAGTGTGAAAAGAGGAACTGATTATTGGAGTGAAGATGGTGATGGGTCAGCCATTTAGTGGCAACATGAAGGCAAGCTCCATTTTTAAAATCTATTGTTTGATAGAGCTTTGGTTATTATGTAGCAGGTTTCAGTATTGCAGTTGTTAATGATTGTTTGTATTATTAAAGTTTTAGAGATATATGTGCATTTACGAAATGTATGGACTGTTGGAAACAGCCGTGTGCACTCTACCCTCGTTAGACCTCACTTGTGGGAGATTACGTTGGGTATGTTGTTGTTGTTGTTGTATGGACTGAGATCAAGCGAATATACTATTTTTATTTGCTAAATTTAGGTTAAGAAAATCCCATCTTTTACTTGTGGAGTGTATTCATGCTGTAGTACTTTGGTTGAAGCTGTTTCGGGACTGGCTTGATCAGAAATAAAGGAAAAGAAAAAAAAAGGTTTTTGGGTTCTGTTGAGATTTACACTTTTGCTATGCTCACACTCCATCCTGATAAGCTGTCCATTGTATTTTATTATTGAGTGATTATTTCTTACACATTAGACCAAAAAGTTCGGGTATGGCAGAAATGTAGTAGCTAAGTTTTCAAATTTACAGGAAGTTCCTTAATGCTCTACCTTGGGCCTGTTTTTATACGATATGCATTTGTTATAGTTGAGGTGCAGCGGTGGGGGTAAGTTTATTTCCTCAATACTAGGAAAAGAAGGCGCTTGTAAAATTTTAGTACATACCCCTAATTGAAACTGTCTAATTTCTGGATAACCAGAAACTAAACCGTATTATTTCAAATTTCAAAGGATGAAATCGATGATGTGGAAGCCAGCTCAGTCTATACTCAAACAACATTTTGAGGTAAAGAAATAATTTCTGAGTTTGGTCAGTCAAGTAAACATATCTAGGATAACTTTGTTAACGCCAATGATCCCTCAGAGAGTTGCATTAATTGACTAATTTGACATTACGGGAAGTGTTGTTATAAGATGCTTGAAAAGCTTACGTTTCTTTTGCCACCTTGCAAAAGAGGCTGGAGAGGAGGTGGGGAGGCGGGTGGTAGTGATTGATGTTTGACATTTTATTCGCTGTGCTTTCAAAACTTTTTGCAGCTCTTGTCAAGCTCCTAACATAATAGATGTAAGGCACATGGCTCACATGCTCTGTAACTTGTGGACCATTTAATTGTTAAAAAAGTTTCATTTCATCTCATGATTTATTTTCCTTTGGCCCGTTCAGCTATTTAAGATATTTGCTTGATTGCTTCTGTTACATGACTGTTACAATCTATTTTTTTGATGTTGCAGAAAGCTCTTGCTGGCATAAAACGTATCAATTTGGAAGGTCTGAGATGGAGAGTGTTTGATGCCAAAGGCCAGGTTGGAACACACTTGACTTTCGTAATTTCAAATTAAAAATAAAAGGAAACGAATATCTTGGTGAAAAAAGTTAGTTAGACACTGATAAGGAATGGCATGCAAATGTCAATTTCCGTTTCCTTTCCTTTTGAGTTTTGGGTTTCTCTATTCTGGGAAGTGAATGTGTTAGCCTTATTGGGGATGTATATGGAGTTCAAGGATGAGTGTATATAAAATGTCATAAGTTGAATACTCATAGTTCTTATAATCAAGTTCCATGCTTTGCACTTACCCCGAAAAAAATTAAATTCCAAGGTCTGACATACGGCTCTACATTACTATTCTAGTTGTCGATTGAGGATCTTTCTTTTTTCTTTTCGTTTCTTATTATCCATCTTCCTCCATTCAATATCTAACAATTAGATAATACTCTTCCTGTGGTCAATATCTTGCTCTAAGATTGTACATGCTATATTTCTTGAAGCATCAATACAGACCTGTTTTCTATCTATATTAGCAAACTCCTTGATATATAGGTCCTGGGAAGGCTAGCATCACAGATATCAACCGTGATTCAAGGAAAAGATAAACCAACATACGCACCTAACCGCGAAGAAGGTGATATGTGCATTGTGCTCAATGCAAAGGACATTTGTGTCACTGGGAGAAAACTCACGGATAAGTTCTATCGATGGCACACTGGGTAAGTGTTGTTGATGATTATGGAAAAAGTAAAAGCAAATAGCTGAATAAAGACGTACAAGCATAATGTGCAGGACTCTTTGTAATTGTTTTTCTTGAACGACTTTATAGTTACATAGGCCACCTCAAGGAGAGGAGTCTGAAAGACCAGATGGCTAAGGATCCAACAGAAGTTATTCGCAAAGCTGTCCTGCGAATGCTGCCAAGAAATAAGTTGCGTGATGTAAGTGATTTGCTTAGAGAGATGAAATCAAAATACCCTCTTTCGTTTCTCCTTGTAGCAACCGTAATGTTAAAATTAAACAATGAAGTTTACAATTTTTTCTTGTTTAGCAATAAGTTAACTTCTGTCAATTGTTTCTGTCTTTATACCAATACTTTTCTTTGTTATATAGGATAGAGATCGGAAATTGAGGATTTTTACCAATGATGAGCACCCTTTTGCTGACAGACCTCTAGAGCCGTATGTGATGCCTCCTAGACAAGTTCGTGAGCTGCGCCCTCGTACAAGACGAGCCATGATTCGAGCTGAAAAGAAAGCTGAACAACAGCAACAAGGTACAAACAATACAAGTAAAAGAAAAAAGAACAAGGATGTGGAAGAAGAAGCAGTGAGCACATGAAACATATGAAATTTCGAGTTTGGGCTCTATTTTCCAGCCATAACGCGATCTTGGCGTGGCTTCCGAGATGATTGAAAATTTTCTAGTACCATATTATGACTTGGAATTTTTTTTTTCTGGTTAGTTTGTTTACATGTATTTGTCTTTCACTTCTGGCTGATGTTATATTTGCCTGGAGATGAACCAGGATAGATGATACACTTGAGCATTGTTATTTCCATATGATGCACCAATAATCCCTTCTTTCTAAGCTCTAGTTAGTAGTTATTTCATATATAATTACTATATAGTTAGTAGAGAATGTTTAAACTAATTATATGTATTCAATATAGACAATTCTT</genome_strand>
        <mrna_strand>TTAAACCCTAGCTAACCCTCAGCTCTAAG....................................................................................................................................................................................................................................................................TGTGAAAAGAGGAACTGATTATTGGAGTGAAGATGGTGATGGGTCAGCCATTTAGTGGCAACATGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTCTTGCTGGCATAAAACGTATCAATTTGGAAGGTCTGAGATGGAGAGTGTTTGATGCCAAAGGCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGGAAGGCTAGCATCACAGATATCAACCGTGATTCAAGGAAAAGATAAACCAACATACGCACCTAACCGCGAAGAAGGTGATATGTGCATTGTGCTCAATGCAAAGGACATTTGTGTCACTGGGAGAAAACTCACGGATAAGTTCTATCGATGGCACACTGG..............................................................................................................TTACATAGGCCACCTCAAGGAGAGGAGTCTGAAAGACCAGATGGCTAAGGATCCAACAGAAGTTATTCGCAAAGCTGTCCTGCGAATGCTGCCAAGAAATAAGTTGCGTGAT............................................................................................................................................................................GATAGAGATCGGAAATTGAGGATTTTTACCAATGATGAGCACCCTTTTGCTGACAGACCTCTAGAGCCGTATGTGATGCCTCCTAGACAAGTTCGTGAGCTGCGCCCTCGTACAAGACGAGCCATGATTCGAGCTGAAAAGAAAGCTGAACAACAGCAACAAGGTACAAACAATACAAGTAAAAGAAAAAAGAACAAGGATGTGGAAGAAGAAGCAGTGAGCACATGAAACATATGAAATTTCGAGTTTGGGGTTTATTTTCCAGCCATAACGCGATCTTGGGGTGGGTTTCGAGATGATTGAAAATTTTTTAGTACCATATTATGACTTGGAATTTTTTTTTTTTGGTTAGTTTGTTTACATGTATTTGTTTTTCACTTTTGGGTGATGTTATATTTGCCTGGAGATGAACCAGGATAGATGATACACTTGAGCATTGTTATTTCCATATGATGCACCAATAATCCCTTTTTTTTAAGCTCTAGTTAGTAGTTATTTCATATATAATTACTATATAGTTAGTAGAGAATGTTTAAAATAATTATATGTATTCAATATAGACAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316602" ref_strand="+" ref_description="SGN-U316602        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT4G22380.1 | Symbol: None | ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. | chr4:11812053-11812934 REVERSE | Aliases: F7K2.1 (evalue: 1e-52, score=202) genbank/nr: NHP2-like(evalue: 3e-51, score=204)">
      <seq>tcttcctcctccacagttctctcaatcagcagctgccatggcaacagaaactgtgaacccaaaagcatatcctcttgctgattcacagcttacaacgaccataatggatttggttcaacaagctgctaattataagcagcttaaaaagggtgctaatgaagctacaaagacactaaacagaggaatttcggaattcgttgtcatggctgcagatactgagcctcttgaaatccttcttcaccttccgctccttgccgaagataagaatgtgccgtatgtctttgtcccttcaaaacaagctcttggccgagcatgtggtgttacccgtcctgtgatagcttgttcagtgacgagcaatgagggaagccagttgaaatctcaaatacagcaactaaaggatgccattgagaagctcctcatctaaatgttgagccttctacagcatgatgagccttttgaggcttggactgaagtagttgccgtcctgttagcgcctttttttaatccttgtttcatttttgttcgtgaatcttacaatcactgttctaagagtaccgataaacacatgaaaatttaatatcaggtttacgttacagttaaacttgagttttattatatcgtctatatctagggatcgtaaattgtaatgaaggatcctctttgcttcattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="38467" stop="35381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38167" g_stop="38128" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38127" i_stop="37990" i_length="138">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37989" g_stop="37869" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="161" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37868" i_stop="37563" i_length="306">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37562" g_stop="37459" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="265" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37458" i_stop="36179" i_length="1280">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.800" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36178" g_stop="36047" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="397" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36046" i_stop="35957" i_length="90">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35956" g_stop="35675" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="679" r_length="282" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U316602" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38167" e_stop="38128"/>
          <exon e_start="37989" e_stop="37869"/>
          <exon e_start="37562" e_stop="37459"/>
          <exon e_start="36178" e_stop="36047"/>
          <exon e_start="35956" e_stop="35675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCTCCTCCACAGTTCTCTCAATCAGCAGCTGCCATGGTGATTTCTCTATCTCTAATAATTTTGCTTTCGAAGTTGATACATTTGCTTAGTTTATTGAAATTCTTCATCTTTTTGTTTGATTTTTCTGTTCTAATACACAGTTAATTCTGATAGTTTTGTTTTCTGTAATTGTAGGCAACAGAAACTGTGAACCCAAAAGCATATCCTCTTGCTGATTCACAGCTTACAACGACCATAATGGATTTGGTTCAACAAGCTGCTAATTATAAGCAGCTTAAAAAGGGTGCTAATGAAGGTTATTCACTTTTTTACACTTCATATTTAGTCTTTAACTTTAGTTTTGTGGTGGTGGGTAATAAGCCAGAAAGATTGTTACTTGTATTGTTTTGGAGCTTTATTATATGGTGTTTTGGTGAAGAAGTTACTTTTATGTTATGAGCGTTTAACTAAAATGGACAAAGTTGGTTTGGTTTCATTTCACCTACTATAAAAAAAATTAGGCATAAAGATTTGATTTTTCCTGCTTTATGAATTGGTAATGTGTTGCTCCTCATTGTACTGCTTAACTGAAAGAGAAAACTGTGTTGTTCTTCTGTTTCAGCTACAAAGACACTAAACAGAGGAATTTCGGAATTCGTTGTCATGGCTGCAGATACTGAGCCTCTTGAAATCCTTCTTCACCTTCCGCTCCTTGCCGAAGATAAGGTGATTTACATTTTGCCTTTTGCTCTTTTCCTCGTAAAGTTTTCTTCTTTACTCTTTTTTGGTGTTGTGGCTCCAATAGAGGTAATGAATACTAAGGGACTCTGGTTATTGACATTTTCAAGGGTTGTGTTTTTTTACTCTTTTGTCTGTATTATGAGGTTATATTGTTCTGATTTCAGACTCTTATGGAAAATGGAATCATGTGTTTGTTATGCACATCACCCGTTATAAACTCGTCATTTTGAGGAGTTTGTATTAAACTAGAGTCCTATAGCTGCTTCCTGCTTTATTTCTATGATTTAGCTTGTAATATTTCTGCTTCGCTTGAAAACACAACTAAACCAACAAGACCAAGCCTGACCAAGCATAGTCTTCCAATGTCTTGGCATTTTCTATCGATTCCGTTGCATGGTGTCAAATGCTACCAGTTTTCGATAGTCATGTTTCTTGGTTCTGACTCAAAGATTAGGTAGATGCTGCAGTTTATCAGACTTCTGTTTCCTGCATATAAAATTTAAAGTTTTTAGGTGTTCTTTAAAGTAAGATCAACAGAAAGAGACTAGTTTTCAGTATAATGAGGTAACTAATTGTGATTTGAACTTTGATGTTCACCTAGCACAATGCATACAACCCATGTGAGTACTTTCCGGCTGAACCAAATCCATGGGGGCAAGTTTTATGGCATTGTTACTCTGCGAATAAACAAAAGAAATGGATAACATATACAAGCTAATGTACTTTACTTATGCATGGGGAATGCTTTGGAAGCTAAAAAGGAAAAATACTTTCCTTTGGAACTTGTGTCCGGTACCTGCAGTGGAATCCCGATTAAAGGGGATAGTGCTACCTACTAGGATATTTCCCTACCTAGGGCTCTGATGGGAGATCTCTACTTGAGAATAGAACATCTATATCTTGTTAAAACTATACAGTTGCAAGGGATGCCATTATCAGTATAAGGGATAAACTGACCTCTTTTACTCAAAGTTATTTATTTGTCACTTTATGGCTTTTATTGTTTTTTAGTTATAGTTATACCTAGAATTGTCTTCCTTGAACAACTATATGAGAATTATTCATGTCTTTCAACTTTTGGTACACTTTTCCATCACCAACATTGTTCTGGACTACTGTGTCGTCTTTTGTTTGGTGGTGATTATATTAAGATTCTTGTTAAGTTAAATTGTTGCATTCGCACCATAAACCAAGAGATGGACTTCTTGAATTGACATAACAAGGGAGTTTTGATTCTAACTTCTTCGTTTTATCAACACTTTCAGAATGTGCCGTATGTCTTTGTCCCTTCAAAACAAGCTCTTGGCCGAGCATGTGGTGTTACCCGTCCTGTGATAGCTTGTTCAGTGACGAGCAATGAGGGAAGCCAGTTGAAATCTCAAATACAGCAACTAAAGGTAACATCCCAAATCTTTTTCGTCTTTGTCACATCAACAACCACTTCCCCTTGCGTAAATACTCAAATCGTTGTTTCTCTTCTTATTCAGGATGCCATTGAGAAGCTCCTCATCTAAATGTTGAGCCTTCTACAGCATGATGAGCCTTTTGAGGCTTGGACTGAAGTAGTTGCCGTCCTGTTAGCGCCTTTTTTTAATCCTTGTTTCATTTTTGTTCGTGAATCTTACAATCACTGTTCTAAGAGTACCGATAAACACATGAAAATTTAATATCAGGTTTACGTTACAGTTAAACTTGAGTTTTATTATATCGTCTATATCTAGGGATCGTAAATTGTAATGAAGGATCCTCTTTGCTTCATTAAATTTTGA</genome_strand>
        <mrna_strand>TCTTCCTCCTCCACAGTTCTCTCAATCAGCAGCTGCCATG..........................................................................................................................................GCAACAGAAACTGTGAACCCAAAAGCATATCCTCTTGCTGATTCACAGCTTACAACGACCATAATGGATTTGGTTCAACAAGCTGCTAATTATAAGCAGCTTAAAAAGGGTGCTAATGAAG..................................................................................................................................................................................................................................................................................................................CTACAAAGACACTAAACAGAGGAATTTCGGAATTCGTTGTCATGGCTGCAGATACTGAGCCTCTTGAAATCCTTCTTCACCTTCCGCTCCTTGCCGAAGATAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCCGTATGTCTTTGTCCCTTCAAAACAAGCTCTTGGCCGAGCATGTGGTGTTACCCGTCCTGTGATAGCTTGTTCAGTGACGAGCAATGAGGGAAGCCAGTTGAAATCTCAAATACAGCAACTAAAG..........................................................................................GATGCCATTGAGAAGCTCCTCATCTAAATGTTGAGCCTTCTACAGCATGATGAGCCTTTTGAGGCTTGGACTGAAGTAGTTGCCGTCCTGTTAGCGCCTTTTTTTAATCCTTGTTTCATTTTTGTTCGTGAATCTTACAATCACTGTTCTAAGAGTACCGATAAACACATGAAAATTTAATATCAGGTTTACGTTACAGTTAAACTTGAGTTTTATTATATCGTCTATATCTAGGGATCGTAAATTGTAATGAAGGATCCTCTTTGCTTCATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327805" ref_strand="+" ref_description="SGN-U327805        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT4G13730.1 | Symbol: None | RabGAP/TBC domain-containing protein, low similarity to SP:Q08484 GTPase-activating protein GYP1 {Saccharomyces cerevisiae}; contains Pfam profile PF00566: TBC domain | chr4:7970287-7974244 FORWARD | Aliases: F18A5.120, F18A5_120 (evalue: 2e-150, score=529) genbank/nr: RabGAP/TBC(evalue: 5e-171, score=573)">
      <seq>caggaggctagcatcacaagggataccagatggagctggcattcgtgctacagtgtggaagctgctattgggatatttgccgaccgagaaagcactatggccaacagagttggttaaaaagaggtctcaatacaagcattttaaagaggagcttttggtgaatccttcggagattacgaggaagttggagaagtcggtaatacttgatgatgaaggaacagttatagaggacaagggtgcactcccaagatcagagatacctcaaggagagcatcctttaagtcttgggaagaatagcatatggaatcagttcttccaggacacggaaataattgaacagatagatcgagatgtcaagcgcacacatccagacctgcactttttctctggggacacaccatttgcaaaatctaaccaggactctctgaggaatatactcattatctttgccaaactcaatcctggtataagatacgtgcaagggatgaatgaagtattggctccactattctatgtattcaggaacgatcccaatgaggaaaatgcagcatctgcagaagcagacactttcttctgcttcgtggagctattgagtggatttcgtgatcatttttgtcagcaacttgacaatagtgttgttggaattcgttctacaattacaaagttatcacaatttctgaaagaacatgatgaggagctctggcggcatcttgaaatgacaaccaaagtgaatccacagttctacgcattcagatggataacacttctgctaacacaagaattcaacttcccggacagcctgcttatatgggacacactactaagtgatcctgaaggacctctggaaacgctgcttcgagtctgctgtgctatgttaattattgttcggaggcgtctacttgctggggatttcacttctaatttgaagctactccaaaattatccatccacaaatatcagtcacctcctctacgtagccaacaaactacgcgttaaatcagtctaaatctgtcaaagcggaaaagagattttggttggtccagtctaattctttgtatttcttggtgttgtgatgtaaatgtctcgtcaattcagtggtaggcatctgcaaactccctccccctctcttcccttctctcccaatcattcgtcttgcattttgttctcgtgtttacgcttatcagtgagtgttaaaagctgttgttttttggctttggaaatatttattgcattctcaaatgcattcctcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="46036" stop="38754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45736" g_stop="45676" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45675" i_stop="45478" i_length="198">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45477" g_stop="45373" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="166" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45372" i_stop="44515" i_length="858">
            <donor d_prob="0.136" d_score="1.00"/>
            <acceptor a_prob="0.080" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44514" g_stop="44362" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="319" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44361" i_stop="43594" i_length="768">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43593" g_stop="43495" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="418" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43494" i_stop="43418" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43417" g_stop="43289" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="547" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43288" i_stop="41914" i_length="1375">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.770" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41913" g_stop="41734" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="727" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41733" i_stop="40501" i_length="1233">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40500" g_stop="40384" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="844" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40383" i_stop="39464" i_length="920">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39463" g_stop="39054" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="845" r_stop="1254" r_length="410" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U327805" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1254</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45736" e_stop="45676"/>
          <exon e_start="45477" e_stop="45373"/>
          <exon e_start="44514" e_stop="44362"/>
          <exon e_start="43593" e_stop="43495"/>
          <exon e_start="43417" e_stop="43289"/>
          <exon e_start="41913" e_stop="41734"/>
          <exon e_start="40500" e_stop="40384"/>
          <exon e_start="39463" e_stop="39054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGGCTAGCATCACAAGGGATACCAGATGGAGCTGGCATTCGTGCTACAGTGTGGAAGGTATAAGATTTGCTTGTCGAGACTTATTTTACGCTGACACATATCCCGGACTTAATACTCCTCTGCTCATTTCGGTGGAATGTGTCTGACTGTACAATGGTGTAACTTCTTATCCAAACGTTTTGTTGATAAGAAAAGGTTTTACCTTGGATGAGTCTCAGTGTGTAGTTTCCTCCTAATTGCATGTACTTTGTGCAGCTGCTATTGGGATATTTGCCGACCGAGAAAGCACTATGGCCAACAGAGTTGGTTAAAAAGAGGTCTCAATACAAGCATTTTAAAGAGGAGCTTTTGGTGAATCCTGTAAGTTCAATACTTGTTGCTAATGCAATGATTACAGTCAAACACGTTAAGTTATTTTTACTAGTTCCTGAAATGTTGTTATACCATTTGTCGGTATTAAAGAAGATGCTTTGCTAATTGGAACTGTTATAATTCTGTATATCTGAAACTATGGCTGCAAGGTTTATCCTTGGCATGATGTTATTGATGAAAGTCATGTTAATGATCCGTTGATGCTTGCACTTCTTGCAAGTTCTCAGAGTTTTTGGTTCTGTAACAATAAGGGCAAGTTATTTGACATTTCTTCCATGTTGACACATCCTCTATTTGACTTTTATAAATTTTAGATCCTATGTGAGAAGAGAAAATATCCACATATACTAACTGAATAAAAATTAATGTTCCCGTTGAAACGACATCTTGTTGAATGATTTATTTTAGTGTTTTTGTTTTCTTTTTTTGGGTCTTTGAACCCTTGCAATAGACATGTTAAGACAGATAAGCTTAGCTAGAAAATGTTATGTATCATTTTCTTGTACAGATATCATACTGATCGTGTTAATTGCCCCCATGATATTGTTTGGTAGTCCATACTAGAAAAAACTCCACTGTGAAATTGACTCAGCGAGTTGGGGTTGAATTGGAAAACATGATAGAAGCTCTCTCATGGATCAAAATCATGTATGCTATTTGGGTGTTAAAGCGTACATTGTATCTTCAGCACTTTCTTGGTTCTTTTGTGAAGGCTCACCTATATTAAAAAAGTGGTGTTATATATCTGGTGGATTTACTTATCAAAATATATGTGGCAAATTACATGAACTTGAGCATTGCTTGTTTTCAAATGTTCGGTGTCTGAATGTTAATATGGCTAGGCAGTCGGAGATTACGAGGAAGTTGGAGAAGTCGGTAATACTTGATGATGAAGGAACAGTTATAGAGGACAAGGGTGCACTCCCAAGATCAGAGATACCTCAAGGAGAGCATCCTTTAAGTCTTGGGAAGAATAGCATATGGAATCAGTTCTTCCAGGTACAATATTTATTCTTGTTCTTTTCCATCTTTCACCGCAATGTTTACATGGAGTTCCTTTTAGATCATAACTGAGGGCTGTTGTTATCACCAGATGGTTGCGTTTGTGTAATCAAATTTATACATCCTTGTTTTATTTATTCCTGTAGACGTTCTTCCCTAGGTTTTTAACTCTCACTGATTATACAATTCATTATTAGTGTGGTTGTGATGGGCTCAAATGAGGGAAATGGATCAATTGCTTCTGAAAACATCCTTCTCTTTGTTCTATAGAGAATTAGAATTGCGAGTTGATAGTGGGATTGCCTTGGATGCAAAACTGGAACTAGTTGGATGGAGTAGATAAGTTCCTTGTTAATTAAATAAACAAGTAAATACCCCTCCCTAAGCCGCAAGAGAGAAATCAAAAGTGCCAGATGGGGAACCCTCCCCCCCCCCCCCGTCACATGTGGCCAAGAGGCAGACAACAGAAACTCAAAATAAATATTTGACATGCTCTTAAGGAAAAGAGCTCCCCCCCCTTCCTTTTCCTGTCCCGCGCTAGGTAACTTTATTGAATATCCAAGGCAAGAATCTTCTGCTTTATGGAGTTAACTCGTGTTCTGCTTTTTGTTTGTCTTGAAGCTGTTGTCAAGTACCATTCGTACATTACACCGGATGACTGTTAGCATTAATGTATCTTCCAACATGAGGTGTCTACCTCCAATTATCTGACAGTTGTTTAACATTGAAGTGACTACTAAATTCTTCTACGTGATTTGCTTCTAGGACACGGAAATAATTGAACAGATAGATCGAGATGTCAAGCGCACACATCCAGACCTGCACTTTTTCTCTGGGGACACACCATTTGCAAAATCTAACCAGGTAAATTCTAGCCTTCTTGACTTGAGAGTTAGTACAAATCTCTGTTGATCACCTAATAGTATATCTTGTGTTATCAGGACTCTCTGAGGAATATACTCATTATCTTTGCCAAACTCAATCCTGGTATAAGATACGTGCAAGGGATGAATGAAGTATTGGCTCCACTATTCTATGTATTCAGGAACGATCCCAATGAGGAAAATGCAGTAAGTGATGCCTTGATGCTGGACTATATTTGCATTAGCTATGTTTTGCAGATCATAACTTTAGAGACATATCAGCTTTGTGACCAAAGATTTCCTGAATATGTTGAGAGCAATGCTCTGAATTCTGTTATGCTCCAGCTTTACCACTGTTGATGTCAACAATCCGTTCTATGCACATGTCCTCCTTTCTTTTTGTTTGCTTCTCTTCTATTTTCTTCCTCATAAGGGCTTAACTGTAGCAATACTTTGGCTAGTAACACTATTTCCATTGTCAAAACGTATGTTTAGAGACTTATATTAACACATGTCGTTGGAGAGCACATGCCAAAACTACTTTGATATTGATCCATTTCCCTTTATTATGTTATTATTGCATTCTTCCCTGATTAAAACCATCCCAATATTTCTTCCCTAACTTGATCAATCCCTAAGAAAATTTGATTGCAAAAGTTATAGCTTTCATCACCTAAATAGTTTCATACTTCAAGATGTGCCTCCCTCGCCACATCAAGAAAATGGAACTATGCATATTAGTGTCTCTCGGGGATGGTTGAGTAGTTGAGGCTAGTTGAGGCATAGAGTGACAATCTGGTGATCTTAGGTTACATCACTTAGTTGGGTTGGTTTGAAAAAGTTGAATAGCTGAGTTTGAAACTCAGTTTTTCTATTTCTCGAAGAAGTGTTTGTTTTTTGCTTTTGAGTTTTGCCACACAAAAGAAAAAAGAGGGAACAAATTATCAAATCTTTCAAAAAGTTGAAACACCATCCTTGTGTAATAAACTAATCAAAGTCTTACTCATGTAGACGGTAAGCAGAACACTTTATTTACTCCTTACCTTCTCAGATAAGTTTCTAATGCTTCGTTGTTTGTATTGACTTCTAATTTGTTTATCAACATCTTCTTTCGTGTAAGTGGTGCAAACACACTCTTGCATCCTGCCCTATTTCCTAGGCTAATGTTACAAGATATCAGTTATTCATTATTAGATCTTGTTTTGAAGCCTTTTTCCTTGATAATAGACCTTCCTATAAAGCCTTGTGCCTAAACTTTGTTATACCAACTAATCGTGTGTTTTTCAAACAGTAAAAGTGAATATAGTTTTTGACTGTTTTGAAAGATTTAGCTTAGATATCTTCACTGTGGAACATCTTTTCGAGCGAAATAAAAATATGAGTATCAAACCCAAGTCATACTTTTTCTGACAAATACTACCTTAATGTAAGCCTGTCTGCTCCCACCTTGTTGGGCGGGCAGATGTTGAGATAAATGATGATTACATCTGTACAAGTTATTCTTTCAGCTTTTTTCTGGATTCAAGTGTCAATGTTTACAAGTTCAGCTCTGTTTATCATTTTCGATTTGCAAGCTATGCAGGCATCTGCAGAAGCAGACACTTTCTTCTGCTTCGTGGAGCTATTGAGTGGATTTCGTGATCATTTTTGTCAGCAACTTGACAATAGTGTTGTTGGAATTCGTTCTACAATTACAAAGTTATCACAATTTCTGAAAGAACATGATGAGGAGCTCTGGCGGCATCTTGAAATGACAACCAAAGTAAGATCTCTTTTATGAATGGAAATACTTTCCTTGATCAAAAAAGAAAAGTAAGATCTCTTTTATGCTTAACTTTAGCAAGCTGCATTTGTTACCATGGCTAAAAATGTCAGCATTATTCCTCTCTGATTGGTAATTATGCAACCTGCAAGTTGACACAACCTAGTGACATATATATCATTTTGATTGTTTAGAGGATGATGAATGTCATTCTAACTTATTGTTAGAAGCCTCAATGCCAACAATAAGTGTGATCTCTTTTGATTTGCATCTTCTCGATGCCTTTAGTGACAACTTCTTACTTAAAAAAAAAGTCTTGCCTACAAAGTAATAATATCAGGTTATACATTCACATTTAAAATTTAAAATTTGAACTTTGATTTGTTAACTATTAAACGAAGATGCAGAAGTTAAGGACTTGTCGACCTAAAGATTACTTGTTTACGGCACCTTAGTTTCAATTGAAGATGACTGCTTATACTTAGGAGAACTCACATTTAAGCTCAATGCTTCCATGAACGCGTTAACCTTGTTCGCTATGAAATGTTTCCTTTAAAATTTAAATGAACAATCATTCTGCTTCATCGAAGTTTCTTGCACCTTTTAGATATTCTGGGAAACTAACCTGACATGAGAAGAATTGATTCAAATTTATCTTTGTTGTTTGTCTTGTTGATGCATCATGTATTCACTATTGAAGTAACTGGTAACCTTCTGCCTCTATAAATAGGATTTGCTGGCCTAAATGTTGCATGCATGTCTAATTTAAATCTATATATCCTGATAGGCAGGGGCGGAGACAGTAGGGCCCCTTCGTCAAAAAATTACACTGTTTGTACATGGTTAAAATTATTTTTTATGTATATATTGTAGATGTTGAACTCCCTTCAGCTTTTTCTTGTGTTTACTTCTTCATATTTTGAACCCCATAGTGAAAATTCTGGCTCTGCCATTGCTGATTGGGCTGTGCTTTTTAGGCAACTGTTTTATGCCCCATATTTGTGTGCCTGTGCGTGTGACAAGACATCTGTGTTTTTGTGTAGTTCCTTTGGCAATTATTGCTTTTACTATTGTACTGGCATATGAGTGATGAAAAAACTGACTTCTTTATATTACCAATTTCAAAAATAAATAAAAATAACTGACTTCTCTTGTTTCTGTCTTCACTTGATGATGTCATAGTTAGTTCTTTGTTATTAGTGATCTTTATGTGCCTGATGTTGCGTGCAACAGGTGAATCCACAGTTCTACGCATTCAGATGGATAACACTTCTGCTAACACAAGAATTCAACTTCCCGGACAGCCTGCTTATATGGGACACACTACTAAGTGATCCTGAAGGACCTCTGGTGAGACATCCTGGAAGTAATGCACTTTTATACTATATTAGCATGGATAAGAACTTTTTTTGCATGAACTATTTGCTTCTTCAATTATCTTCCTTTCAATTAGTTGGGACTAAGATTGAGGCTTAGTCATGTTGCTACCCTTACCTTAGGTCTTCTTGCTGAGTTTGATTATTTTCGGTGTTTGAGAACCCCATATCTTCTTAAAAGACGAATTATTTAGTGGTTGGAATGAAACTGGTCAAACCAAGCGGAGTTGGATATTGAGGATTCTTACAGCCAGCCTTTATTTTATTTAAAAGAAGGATTCCTACTGCTGACTTCACCTAGTTTGGGATAGAGGTGGAGTTATTGTTGTCTGCTAGTATATTTTTTGGTTTATTTCCCTTGTGATGTATGGACATGTTATCGGAGAAGAGAGGAATTTGAAAATCCCGGATTTGATGGTATGTCTCAGTTGTCAGACTCAAAACACAAAGAGATGGTCATGCAGCAGTGCGGTTGGGAGTGTTTTTGGGGGCAGTTAAGGGGAATTTAAATTTTCAACCAAAAGGCTTCAACTTGCATGGAATCTACCTGTCATTGCATTTGTAAAGCTGGCGATTCCACAATCATGGGACTTTCATATCTGCTGTATGTAATTTGCCATCATGATTTGAACTAAAAGAACTTACGAGTGTCGGACAGAAGTACAAAACCAATACTTTATAGCATCTTGAACATTTACAAGGTTATGTTTCGTGGGTTCAGTGTGGTCAGGTCGACAGAGTGTTTTTGGGGTGGTTTGCGTTGAAGTGAAGAGAGAAAGGAATAGGGAGGAGGTTATGCAACCCTGAGGCTGCGAGTTTAGAACTGCACCACCAGGGATTTCTCAGTTATTAAAAAGAAAAGTCGGAATACTCAAATTTTTCTTTAACTTGCAGGAAACGCTGCTTCGAGTCTGCTGTGCTATGTTAATTATTGTTCGGAGGCGTCTACTTGCTGGGGATTTCACTTCTAATTTGAAGCTACTCCAAAATTATCCATCCACAAATATCAGTCACCTCCTCTACGTAGCCAACAAACTACGCGTTAAATCAGTCTAAATCTGTCAAAGCGGAAAAGAGATTTTGGTTGGTCCAGTCTAATTCTTTGTATTTCTTGGTGTTGTGATGTAAATGTCTCGTCAATTCAGTGGTAGGCATCTGCAAACTCCCTCCCCCTCTCTTCCCTTCTCTCCCAATCATTCGTCTTGCATTTTGTTCTCGTGTTTACGCTTATCAGTGAGTGTTAAAAGCTGTTGTTTTTTGGCTTTGGAAATATTTATTGTATTCTCAAATGCATTCCTCACAAA</genome_strand>
        <mrna_strand>CAGGAGGCTAGCATCACAAGGGATACCAGATGGAGCTGGCATTCGTGCTACAGTGTGGAAG......................................................................................................................................................................................................CTGCTATTGGGATATTTGCCGACCGAGAAAGCACTATGGCCAACAGAGTTGGTTAAAAAGAGGTCTCAATACAAGCATTTTAAAGAGGAGCTTTTGGTGAATCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGATTACGAGGAAGTTGGAGAAGTCGGTAATACTTGATGATGAAGGAACAGTTATAGAGGACAAGGGTGCACTCCCAAGATCAGAGATACCTCAAGGAGAGCATCCTTTAAGTCTTGGGAAGAATAGCATATGGAATCAGTTCTTCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACGGAAATAATTGAACAGATAGATCGAGATGTCAAGCGCACACATCCAGACCTGCACTTTTTCTCTGGGGACACACCATTTGCAAAATCTAACCAG.............................................................................GACTCTCTGAGGAATATACTCATTATCTTTGCCAAACTCAATCCTGGTATAAGATACGTGCAAGGGATGAATGAAGTATTGGCTCCACTATTCTATGTATTCAGGAACGATCCCAATGAGGAAAATGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTGCAGAAGCAGACACTTTCTTCTGCTTCGTGGAGCTATTGAGTGGATTTCGTGATCATTTTTGTCAGCAACTTGACAATAGTGTTGTTGGAATTCGTTCTACAATTACAAAGTTATCACAATTTCTGAAAGAACATGATGAGGAGCTCTGGCGGCATCTTGAAATGACAACCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATCCACAGTTCTACGCATTCAGATGGATAACACTTCTGCTAACACAAGAATTCAACTTCCCGGACAGCCTGCTTATATGGGACACACTACTAAGTGATCCTGAAGGACCTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGCTGCTTCGAGTCTGCTGTGCTATGTTAATTATTGTTCGGAGGCGTCTACTTGCTGGGGATTTCACTTCTAATTTGAAGCTACTCCAAAATTATCCATCCACAAATATCAGTCACCTCCTCTACGTAGCCAACAAACTACGCGTTAAATCAGTCTAAATCTGTCAAAGCGGAAAAGAGATTTTGGTTGGTCCAGTCTAATTCTTTGTATTTCTTGGTGTTGTGATGTAAATGTCTCGTCAATTCAGTGGTAGGCATCTGCAAACTCCCTCCCCCTCTCTTCCCTTCTCTCCCAATCATTCGTCTTGCATTTTGTTCTCGTGTTTACGCTTATCAGTGAGTGTTAAAAGCTGTTGTTTTTTGGCTTTGGAAATATTTATTGCATTCTCAAATGCATTCCTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331595" ref_strand="+" ref_description="SGN-U331595        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: RabGAP/TBC(evalue: 3e-13, score=77.8)">
      <seq>tacgatgttcccacgacttctcttcctctcactgcaatgacacctcgccggagtatcaacaccgccggcgtatcaatcctaccgtatctgccgaattcacttattcagccaccgtatgctccgccgttgtatcaattctgtttttaaaaaataagccctacgatatggttaacaaacgcgttcccgattggctcaacagctcactctggtcgtctcctggaccacaaccttcagttcaatctccatcttcatcgccgacgccgttaaatgaggatgacaaccggtctacacgttcagctactaaatcatctactgttactgttaacgccgttaaagctggtggttcggctaatgacggagagttaacggtcgaacggcctggttcaatgacggcagccccggcagtggttagagcggagactaggcacgggcctccacgcgctaaagcggaaattagagatcctttgagtagtagtagtaattatcatagtgatgatgaaaatggaagttccgctagtagtacaatgacgtctgcatctgctgctgctgcagcagctatttcgtcagctgaggatatttctcgtcaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="47217" stop="46027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46917" g_stop="46327" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U331595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46917" e_stop="46327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGATGTTCCCACGACTTCTCTTCCTCTCACTGCAATGACACCTCGCCGGAGTATCAACACCGCCGGCGTATCAATCCTACCGTATCTGCCGAATTCACTTATTCAGCCACCGTATGCTCCGCCGTTGTATCAATTCTGTTTTTAAAAAATAAGCCCTACGATATGGTTAACAAACGCGTTCCCGATTGGCTCAACAGCTCACTCTGGTCGTCTCCTGGACCACAACCTTCAGTTCAATCTCCATCTTCATCGCCGACGCCGTTAAATGAGGATGACAACCGGTCTACACGTTCAGCTACTAAATCATCTACTGTTACTGTTAACGCCGTTAAAGCTGGTGGTTCGGCTAATGACGGAGAGTTAACGGTCGAACGGCCTGGTTCAATGACGGCAGCCCCGGCAGTGGTTAGAGCGGAGACTAGGCACGGGCCTCCACGCGCTAAAGCGGAAATTAGAGATCCTTTGAGTAGTAGTAGTAATTATCATAGTGATGATGAAAATGGAAGTTCCGCTAGTAGTACAATGACGTCTGCATCTGCTGCTGCTGCAGCAGCTATTTCGTCAGCTGAGGATATTTCTCGTCAGGCTC</genome_strand>
        <mrna_strand>TACGATGTTCCCACGACTTCTCTTCCTCTCACTGCAATGACACCTCGCCGGAGTATCAACACCGCCGGCGTATCAATCCTACCGTATCTGCCGAATTCACTTATTCAGCCACCGTATGCTCCGCCGTTGTATCAATTCTGTTTTTAAAAAATAAGCCCTACGATATGGTTAACAAACGCGTTCCCGATTGGCTCAACAGCTCACTCTGGTCGTCTCCTGGACCACAACCTTCAGTTCAATCTCCATCTTCATCGCCGACGCCGTTAAATGAGGATGACAACCGGTCTACACGTTCAGCTACTAAATCATCTACTGTTACTGTTAACGCCGTTAAAGCTGGTGGTTCGGCTAATGACGGAGAGTTAACGGTCGAACGGCCTGGTTCAATGACGGCAGCCCCGGCAGTGGTTAGAGCGGAGACTAGGCACGGGCCTCCACGCGCTAAAGCGGAAATTAGAGATCCTTTGAGTAGTAGTAGTAATTATCATAGTGATGATGAAAATGGAAGTTCCGCTAGTAGTACAATGACGTCTGCATCTGCTGCTGCTGCAGCAGCTATTTCGTCAGCTGAGGATATTTCTCGTCAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335334" ref_strand="+" ref_description="SGN-U335334        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 7e-10, score=67.4)">
      <seq>tagagaaaatgtggacgctgatttgctttatgcatatgcaaatgtgctcaacaatgccattggaaatgcataatataaaagttacatgtggtgtgtgttgtttagcaaatcaaggagttaaataacatctgcttttgtggaaaacaataatcttgtgttttgacattttgttatcaaacatataatcttgttatacatcttttaatgtgatgtaatttgatcgttgattcatgtatggaaaagggttaaatatgttattagattgatgactcatgcttattaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="56139" stop="55257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55840" g_stop="55557" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U335334" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55840" e_stop="55557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAAAATGTGGACTCTGATGTGCTTTATGCAGCTGCAAATGTGCTCAACAATGCCATTGGAAATGCATAATATAGAAGTTACATGTGGTGT-TGTTGTTTAGCAAATCAAGGAGTTAAAAAACATATGCTTTTGTGGAAAACAATTATTTTGTGTTTTGACATTTTGTTATCAAACATATAATCTTGTTTTAC-TCTTTTAATGTGATGTAATTTGATCGTTGATACATGTATTGAAAAGTCTTAAATATGTTATGAGATTTATGAGTCGTACTTATTAAACA</genome_strand>
        <mrna_strand>TAGAGAAAATGTGGACGCTGATTTGCTTTATGCATATGCAAATGTGCTCAACAATGCCATTGGAAATGCATAATATAAAAGTTACATGTGGTGTGTGTTGTTTAGCAAATCAAGGAGTTAAATAACATCTGCTTTTGTGGAAAACAATAATCTTGTGTTTTGACATTTTGTTATCAAACATATAATCTTGTTATACATCTTTTAATGTGATGTAATTTGATCGTTGATTCATGTATGGAAAAGGGTTAAATATGTTATTAGATTGATGACTCATGCTTATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315811" ref_strand="+" ref_description="SGN-U315811        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: | Symbol: None | ubiquitin-associated (UBA)/TS-N domain-containing protein, weak similarity to SP:P45974 Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N domain | chr1:1365118-1368792 REVERSE | Aliases: F13M7.16, F13M7_16(evalue: 4e-29, score=125) genbank/nr: gi|18390444|ref|NP_563718.1| expressed protein [Arabidopsis thaliana] gi|25406815|pir||G86181 hypothetical protein [imported] - Arabidopsis thaliana gi|7211981|gb|AAF40452.1| ESTs gb|N65605, gb|N38087, gb|T20485, gb|T13726, gb|N38339, gb|F15440 and gb|N97201 come from this gene. [Arabidopsis thaliana] gi|17065066|gb|AAL32687.1| Unknown protein [Arabidopsis thaliana] gi|21594053|gb|AAM65971.1| unknown [Arabidopsis thaliana] gi|23197878|gb|AAN15466.1| Unknown protein [Arabidopsis thaliana](evalue: 3e-27, score=125)">
      <seq>agaagtaaaaacggcaagtgagatggcggcgacaaatattttactgcagtgcggcgatcgtggaactctgcttggatctgctgcagaagctcagcaacacgcacaggagttttgtcacaccaactactacgagtcccaagaagccattcgctttattgtttgctataattgcggtcacaaatgttcctgcgaaaccgagagcgttatacattcaagaaagtctgggcatactgaattttatgataggacagcagaggtgacggaagaggcagcaagaagaaacagagctaacattcgtcagatgctgagagtagctattgatcgtttggacgaggctgatacttcagagggagcaagaaggcagcagcagcagcagcttggtttgccttcgagacctgttttacaggaaggacagagttcattgactctagctgcaaaggtcgagcagatggctgagtgcctgcggactatccagcagaattccatggatgacgcggccaaagtcatgcaagctttcaactcactgcgtatgtttgttaggaatattgctacgaatcctgatgaggagaaataccgcaaaattagaatcagcaatactgcattccaggcgagggttggccacctacgaggaggtatcgagttccttgaggtctgtggattcgaaagaactatagggggtgaacacttgtacatgcagagagaaaatgtggactctgatgtgctttatgcagctgcaaatgtgctcaacaatgccattggaaatgcataatatagaagttacatgtggtgttgttgtttagcaaatcaaggagttaaaaaacatatgcttttgtggaaaacaattattttgtgttttgacattttgttatcaaacatataatcttgttttactcttttaatgtgatgtaatttgatcgttgatacatgtattgaaaagtcttaaatatgttatgagatttatgagtcgtacttattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="60734" stop="55255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60434" g_stop="60239" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60238" i_stop="57159" i_length="3080">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57158" g_stop="57021" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="334" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57020" i_stop="56678" i_length="343">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56677" g_stop="56597" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="415" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56596" i_stop="56508" i_length="89">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56507" g_stop="56436" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="487" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56435" i_stop="56344" i_length="92">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56343" g_stop="56224" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="607" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56223" i_stop="55930" i_length="294">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55929" g_stop="55559" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="978" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="979" polyA_stop="992"/>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U315811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>978</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60434" e_stop="60239"/>
          <exon e_start="57158" e_stop="57021"/>
          <exon e_start="56677" e_stop="56597"/>
          <exon e_start="56507" e_stop="56436"/>
          <exon e_start="56343" e_stop="56224"/>
          <exon e_start="55929" e_stop="55559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTAAAAACGGCAAGTGAGATGGCGGCGACAAATATTTTACTGCAGTGCGGCGATCGTGGAACTCTGCTTGGATCTGCTGCAGAAGCTCAGCAACACGCACAGGAGTTTTGTCACACCAACTACTACGAGTCCCAAGAAGCCATTCGCTTTATTGTTTGCTATAATTGCGGTCACAAATGTTCCTGCGAAACCGTAAGTTCAAAATTATTTTCTAAGTTGTAATTAGAAATTTTTTATTTTTAGCCTTATAAACTGCGTTGGTTAAGGTATATTTACTGATAATTTTTTCTCATTTGCCCTAATTTTGATGAATAAAGTTAACAGATATATGTTGTTGGTAGAATGGGATAGATATCCAATCAATTTAATCAAGATGCACATAAATTAATCTATACACCAACATTTTTTAAATTCAAAAAAATAAAATAAAAGGTGTACTTACTGTTAATTTTTTCTTATTTGCCCTAATAAAATTAACTCGTATATGCTGCTGGTGGAAGGGGTAGATATACTATCAATTTAATCAAGATGTACATAAATTGATCTATACACCAACATTTTCAATCCAAAAAATTAAAATAAAAGGTATATTTATTGTTAATCTTTTCTTATTTGTCCTAATTTTGATAAATAAAGTTAACTGGTATATGCTGCTGGTGGAAGGGGTAAATATCCTATCAATTTAATCAAGATGCACATATATTGATCTATGCACCAACATTTTCAATCCAATAAAATAAAAATAGTATTTATATGAATTTCATCACGATTTTCTTGAACATAACATGATGCATCGCTAAACTAAACAAAAAATTATATTAATCAAAATTAATCTGATCAGTAATCCTGTAATTAAATAACTCAACATTCATTCAAGTATATTACTTAACTCTTCTATATGTCAAAATAGATAATATTGTACCACTTTTAAAAAATGTCCTAAAACATCAGTTTAAGCAAAAATATTATAAAATAAATTATGCTCGACCATATACAAATGTCTGAAAAACTTTGAAATTAGGATAAAAATATCACAACATGTAATTATATATGTTTATTTAGATATCTAACTTATTTTAAAATCGTTAATTTCAAATTAAATTTATATATAAAAATAATAAGCCACTAAAAACATCTTACTTTTTAATAAATAATGAATTATAACTTTCTACAAGATAATTTTTTTTTAAAACATATTTGAAGCTTAATTTATATTGAGTGAAGTAATTATTCATAGTTAAATAAATCAATAAATTAATCAAAATAAAATACTTGTCAAGCTAAATTAGTCAACAATATGCTATAAAAACTTCTCTAAATTTGACTAAATTTCTTTTAATTGATTTCGAAACCAAATTTAGCTTTAATCCTAATTCAACTCCAATTATAAATAATAATAATAATAATAAAAAATTCAATTATAAATACATAAATCGAAGGAAAAAATAAAAGTGAACAACAATATGGTGGAAAAGTTATTATTGCAGTGCGGCCATTGCGGAACTCTGCTTAAATCGGCAGAAAAAGCTGAAGAGCATGCCAAAGAGAATTGGCATACTAATTTTCGTGAGTCTAATGAAGAATTTGTGTACCTTGTTTGCAAAGTTTGCGGCAAACAATGCGTTTGTAAAACAGTAAGTTATAAATTATTTTTTTATTATGAGTTGATTTTTGTGAAATTAGCTGTGGTGCATGTATATGTTGGGTTAGTTGTGGGAGGTGATAGGTATCTCGTGGAATAATAGTTTAGGTTTGTATACATGTTGGTTGCTTGAGGTGATAGGTGTTCTGTGGAATGGTAGTTTAGGTTTGTATACATGTTGGTTGTGGTGAGAGGTGATTCGAGCCATAGGTATGGAGAAAATCTTGTTGGGAGCAGCACCCAGGAATAGGCTCTGGTGAGTGCGATCCGGATTTAGGGTGGAAAAAATAAAGGTATATTGTAGAATTAGTTGTGCTGTGTTGGTCCTGGGTGTGGAGAAAATCATGTTGGGAGTGACACTCCAGAATGGGCTCTGGTGAGCGCGATCCGAATTTAGGGCTCCGGAATTGGGTGGAAAAAAAAAAGATATCTTGTGGAATTAGTTGTGTTGTGTTGGTCCTAGGTATGGAGAGAATTTTGTTGGGAGCGCGACCCGAATTTAGTGGGCTTTGGACATTGGGTGGAAAACAAAAAAAAAAAATCTTGTGGAAGTAGTTGTGGTGTACTGGTGGTGGGATGTGATAGGTAGCATGTGGAATTAGGTATCTCGTGGAGTTAGTAGTGGTGTGCTGGGTGGTGGAGGTGATAGGTATCTTGTGGAATTAGGTATCTCGTGGAATTAGTTATGTTGTGATGATGATGGGAGGTGACAGGTATCTTGTCGAGGTAGTCGTGGTGTGCTGGTGGTGGGAGGTGATAGGTATCCTGTGGAATTAGGTTAGTCATGGTGTACAGTGTGCATAACTGTTGTTGGTGGGAGGTAACAGGTATCCCATAGAATTAGTCTAGGTGCTTGTACATGTTGGTGTCTGTAGGAGGTGATAGGTATTTTGTGGAATTACTTGTGGTTTGTGTAACTATAGATGTTGGGAAGTGATATCTAGTTGTATACAAACTGGCTTGGGCTTCACGATTATTTAACACAAAAAAGAAACGTAGGGTGTATTTTGTACAGATTTCATTGCGATTTTGTGTTGATGTAGTGTTGTTATTGCTGGAACTACTAGCCTTGATACGTCAAATTTGGGATTATAATCGTAATTGAACTCTATTAGATTGTAATTCGATGGGAGCTAAGCTATTGAGCTGTTGATATTGCTTAGGCGATGTAGTTTACTAGATTATTTTTGGTATCGACTTCTACATTAGTAATTTGTTCGAGGACACAAATTAGGGTAGGAGGTTAGTTAGATAGTTGAGCGATTTCTCGCTTATTCTCCTATACTATTATCTGTATTATACGTCATAGTATTACTCTTGTAGTTGCTTGTCAAGTTCGATTGTTACAAATGATTTCTTTTATACTTCGATTATGGTTTTATATGCAATTAGTATTGCTGTTTAGGATAATTTGTCAGGTTATCTATAATATTTTGTCGTGATCCTTTGATAGTAAAAATACAAATCCACTAAATAATCCACCATTAATGGTGCAGTATAATCCGTGTATTCTAATATTCAATCCTTAGTTTTGATAGGAGTTCCAATATTTAAATTGTCATTATGTTCAATTGTTGGTATAGCGTTTTCATGCGGCTTATTGGAACTTTTGGATTTTGATTATTTGAAGGAGAGCGTTATACATTCAAGAAAGTCTGGGCATACTGAATTTTATGATAGGACAGCAGAGGTGACGGAAGAGGCAGCAAGAAGAAACAGAGCTAACATTCGTCAGATGCTGAGAGTAGCTATTGATCGTTTGGACGAGGTAAGAAATCCTAACGTGTCCTAAAGAATTTGATTTTGCTAAGATTTTGAAGTGTGTGATATCTTGCAACTACCTCAAGTTAGTATATTATAGTATCTGGTTCTGGAAAATGTGTAGATTTGGTACATCTACAACGATGTAAGGTCTAATATGGCTCACGTTATCTGATTTTTTCTTGATTCGGATCAATGTATTGATGAACATTCATGCTTTTTATGATCAACTTGGCCAATGTGTTAACGATCACGTTGCACCTCATCCAAAGCAATCGAGTTTCATCTGATAAAGTATAATTCTTGGTTTGTCTTCTCTGAAGTAATAACAAAAACATTTTACTTCACAGGCTGATACTTCAGAGGGAGCAAGAAGGCAGCAGCAGCAGCAGCTTGGTTTGCCTTCGAGACCTGTTTTACAGGAAGGACAGGTAATTCCTGTTGAAATCTGTCGATATGGTTTTGCTCCAATTTGTACATGCTTGTCCGTACTCACGTTGTTTTTTGATTAATTTTGTAGAGTTCATTGACTCTAGCTGCAAAGGTCGAGCAGATGGCTGAGTGCCTGCGGACTATCCAGCAGAATTCCATGGTAATATTCGAGTCGTTTTAGTTCCAGAATTAAGAAGAATTGTCCTTTCATTCTTTTTTGTTTTAAACTGAGTCTTTGTCAATTTTCACTAGGATGACGCGGCCAAAGTCATGCAAGCTTTCAACTCACTGCGTATGTTTGTTAGGAATATTGCTACGAATCCTGATGAGGAGAAATACCGCAAAATTAGAATCAGCAATACTGCATTCCAGGTGAGAATATGAATTACAAAACGATTGTCCCTTGTTTTTGTTGTTTATTCAATTCTATGTTGTGTTTCTTTCTAACCTTTAAAATTCAGTCGCGAGGAAAGATTATCCATTTTATACCTCGTTAGTACTCAAATTCGTATATAATTGGGGTTTACTTGGTTCAAGATGTTTTCACACATGTGTAGGGCAACTTTTTACCATCCAATGCTTCAACTCGAACATTTTCTATAGATAAGAGTTTGATATACATTTCAAAACGTGCTCGTTAATTCTGTTTTGACATTTTTATAACAGGCGAGGGTTGGCCACCTACGAGGAGGTATCGAGTTCCTTGAGGTCTGTGGATTCGAAAGAACTATAGGGGGTGAACACTTGTACATGCAGAGAGAAAATGTGGACTCTGATGTGCTTTATGCAGCTGCAAATGTGCTCAACAATGCCATTGGAAATGCATAATATAGAAGTTACATGTGGTGTTGTTGTTTAGCAAATCAAGGAGTTAAAAAACATATGCTTTTGTGGAAAACAATTATTTTGTGTTTTGACATTTTGTTATCAAACATATAATCTTGTTTTACTCTTTTAATGTGATGTAATTTGATCGTTGATACATGTATTGAAAAGTCTTAAATATGTTATGAGATTTATGAGTCGTACTTATTAAA</genome_strand>
        <mrna_strand>AGAAGTAAAAACGGCAAGTGAGATGGCGGCGACAAATATTTTACTGCAGTGCGGCGATCGTGGAACTCTGCTTGGATCTGCTGCAGAAGCTCAGCAACACGCACAGGAGTTTTGTCACACCAACTACTACGAGTCCCAAGAAGCCATTCGCTTTATTGTTTGCTATAATTGCGGTCACAAATGTTCCTGCGAAACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGCGTTATACATTCAAGAAAGTCTGGGCATACTGAATTTTATGATAGGACAGCAGAGGTGACGGAAGAGGCAGCAAGAAGAAACAGAGCTAACATTCGTCAGATGCTGAGAGTAGCTATTGATCGTTTGGACGAG.......................................................................................................................................................................................................................................................................................................................................................GCTGATACTTCAGAGGGAGCAAGAAGGCAGCAGCAGCAGCAGCTTGGTTTGCCTTCGAGACCTGTTTTACAGGAAGGACAG.........................................................................................AGTTCATTGACTCTAGCTGCAAAGGTCGAGCAGATGGCTGAGTGCCTGCGGACTATCCAGCAGAATTCCATG............................................................................................GATGACGCGGCCAAAGTCATGCAAGCTTTCAACTCACTGCGTATGTTTGTTAGGAATATTGCTACGAATCCTGATGAGGAGAAATACCGCAAAATTAGAATCAGCAATACTGCATTCCAG......................................................................................................................................................................................................................................................................................................GCGAGGGTTGGCCACCTACGAGGAGGTATCGAGTTCCTTGAGGTCTGTGGATTCGAAAGAACTATAGGGGGTGAACACTTGTACATGCAGAGAGAAAATGTGGACTCTGATGTGCTTTATGCAGCTGCAAATGTGCTCAACAATGCCATTGGAAATGCATAATATAGAAGTTACATGTGGTGTTGTTGTTTAGCAAATCAAGGAGTTAAAAAACATATGCTTTTGTGGAAAACAATTATTTTGTGTTTTGACATTTTGTTATCAAACATATAATCTTGTTTTACTCTTTTAATGTGATGTAATTTGATCGTTGATACATGTATTGAAAAGTCTTAAATATGTTATGAGATTTATGAGTCGTACTTATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320556" ref_strand="+" ref_description="SGN-U320556        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:13898868-13901801 FORWARD | Aliases: F24L7.10, F24L7_10(evalue: 1e-73, score=160) genbank/nr: At2g32760/F24L7.10(evalue: 2e-79, score=189)">
      <seq>aaaaaagagattttcacaaaaaggaaattcccaaccctttaccatttttcttgttcaaagcaaaatctcatcacatttgaagaaaattgatcaaagaaagtgaaaaatcaaacacaaaaatcccaaaaatttcttcaatcccatagttttttctccaaaacccatcttccccttttcaaatcttcttgattctcaaaccctaattcataaattctccttaaattttgcatattgagtttcaaaaatggtgtttttggaaccttaattttcaagatttggaggagtaccatgatgagaagtatatggtggtgggagaaaaaccatgatttcctactaccctttttgagttattgtaagattcaatcaaaatcgactggtttagttgtgaatggaaccgaagaaagtagcttcatctggggaaattcagaataaaaaagagaaaaacttgaagagcatacagtgggaagattatgaacaggaattagttcgtttgtgtagtcttacatctgctcttaatgaagctaaggagaagaaagaattggttcagcagaaactacagtcatttatacaggtagaagcagagtcactaagtcgtttgaatgagcttgatgagatgaaagaaaaactggattctagaaaattagtgatgggaaacatgtcaatgcattctaaagttgtcaaagagaaagtcaagaagcaagaggagcaacttagtaatgacatcaggtcacttttggttgcagggacttctctttctgcagctagcaagcgcttgcaggatgaaagtaggtccctagctggagaaaggggttatgggcaactcagaaccttgcagagagtattcagaacgagacaacagtatatggtgtctcaagttcacatgctttatcctgtgagggttgcaattggacaggcacctgagcaagaacttgaatttttcaacaatagttccagctcaggtgactctgctgggtcaaaacctttagatcacggatccttgaccattgcgggtctacatttaaccgtgttcactaagatgagtttctttactgataagaaggaggttcagaggtggtcacacttattgcatcttatttacaagttcctcttcgttatcccttgaggtttggaggatctcgatcatatatccgtgattatgctccttcagtagagccatcatcatctgatttaacatctagttccgcagtttccacaaattcacgacccgtggaatttcctctatttttagaaggccaagactcaacaagagcggcgtatgctgttttcttgctgaataaggatatagaacaacttcttaattatattggaggcagaagtacagggccaagacatgtactagctaatttgaaagagcttcttagaataatactttctccagagtatatagacacatcattatgagatttatgtaaatgtagatcattgttatatttttatacaggtgctaaaataaaacttaaagccccttgctttagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="+" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="61922" stop="69245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62222" g_stop="62792" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62793" i_stop="63385" i_length="593">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63386" g_stop="63592" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="778" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63593" i_stop="64958" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64959" g_stop="65139" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="959" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65140" i_stop="66197" i_length="1058">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66198" g_stop="66309" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="960" r_stop="1071" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66310" i_stop="66894" i_length="585">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66895" g_stop="67122" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1072" r_stop="1299" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67123" i_stop="68772" i_length="1650">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68773" g_stop="68970" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1300" r_stop="1497" r_length="198" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1498" polyA_stop="1507"/>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="+" ref_id="SGN-U320556" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1497</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62222" e_stop="62792"/>
          <exon e_start="63386" e_stop="63592"/>
          <exon e_start="64959" e_stop="65139"/>
          <exon e_start="66198" e_stop="66309"/>
          <exon e_start="66895" e_stop="67122"/>
          <exon e_start="68773" e_stop="68970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGATTTTCACAAAAAGGAAATTCCCAACCCTTTACCATTTTTCTTGTTCAAAGCAAAATCTCATCACATTTGAAGAAAATTGATCAAAGAAAGTGAAAAATCAAACACAAAAATCCCAAAAATTTCTTCAATCCCATAGTTTTTTCTCCAAAACCCATCTTCCCCTTTTCAAATCTTCTTGATTCTCAAACCCTAATTCATAAATTCTCCTTAAATTTTGCATATTGAGTTTCAAAAATGGTGTTTTTGGAACCTTAATTTTCAAGATTTGGAGGAGTACCATGATGAGAAGTATATGGTGGTGGGAGAAAAACCATGATTTCCTACTACCCTTTTTGAGTTATTGTAAGATTCAATCAAAATCGACTGGTTTAGTTGTGAATGGAACCGAAGAAAGTAGCTTCATCTGGGGAAATTCAGAATAAAAAAGAGAAAAACTTGAAGAGCATACAGTGGGAAGATTATGAACAGGAATTAGTTCGTTTGTGTAGTCTTACATCTGCTCTTAATGAAGCTAAGGAGAAGAAAGAATTGGTTCAGCAGAAACTACAGTCATTTATACAGGTAAAGTTTTGAGCTTTCTTCTTTTTAATAGTCTTGGTTAGTAGAATTTCACTTTTGTTTTATGTTGTTTGTTTGCTTCTGAAGTGCATTGTATCTGTTTCCCTGTTTATAACCAGTAGTAGTAGGAGTTTTGTTAAGTGGTACTTGTTGCTGGTGGTAGGTGGTAGGTATCCAGTGGAACTAATCGAGGTGCGTGAAGCTGGCCCGATAACCAGGGTCATTAAAAAAAGTAGCACTTTGTTACTCGTTATTTACTGTGCTTTAGTTACGCCGTTAGTGGTTCTTCTTCTTTAGTCTTAATAAGTGGTACAACTTGTTTCTCTTTGTCTATGGCCTCAATATTGGGTTGGCAAATTCCTGAAGTGAAATAAAGAGTAAAAGAATATGGGTAAATTGTCATACTTTTAGGGCGTAGTCTCATCTCCCCTTCTGTCTAACCATTTTGTGCGAGTAAATTCAGAGAAGTGGAAGTAATAAGGTGCTCTTTTAATGCTTTTGATTTCTCTGTTCTCATAGTATCTCTCCTTTCCTTTTGATTTTTTGGGCTTTAATGAATTAGCCCGCTTGTTAGCGGGTGGCGATATGGTTCTCAGGTAGAAGCAGAGTCACTAAGTCGTTTGAATGAGCTTGATGAGATGAAAGAAAAACTGGATTCTAGAAAATTAGTGATGGGAAACATGTCAATGCATTCTAAAGTTGTCAAAGAGAAAGTCAAGAAGCAAGAGGAGCAACTTAGTAATGACATCAGGTCACTTTTGGTTGCAGGGACTTCTCTTTCTGCAGCTAGCAAGCGCTTGCAGGTATCTTAGCATTTCAAAACTGTTTGTTCCCCCCTCTATATATGCATATATCTACGTCACCTTCTATACATTTGTTCTATCTCAAAGGACTGTTTACTGACCCGCATGCGTTATTTGCAACCCATAATGAGATTGAAAACTTTAGATGCATGAAAGTGGTATATGGTTAAAGTTTAATAAAATCTTGACATACTGAGGCAATTAGCATGAGGAGCACCTACCAATTTATTCTTGTCAGTTGATAAAGCCCGTCTTCTGTGTGGCTTGCATTCTAGATACTTCAAATGTTTTGCTCCACTGGTTGTCTATCAAATTCCTAATTGTGCTTCTTTAAGCACTTTTTAGCCGGAAGTTTCTACTGTTTTTGTGAAATGACACTTTTTTTTTTGGTTTTAAGAGAGGTAACACTACACATATATTTTAAGCAGGGAACTACACAAAAGGTGTATTCAAGTAATTACCAGTAGTAGTCAAAACTGCAAACCCTACTGCCTATCTAGTCATAAACATTCTAGAACACAAGAAATGTCCTCAACTTCCAAAGGATACATGCTTCCACCAAAATAAAAGAGCTAAACAGTTCATCCTTAGTTTCTGGAAAGTACAGGATTTATCTTGAAAATACCTCTGGTTCCTCTCCCTCCAAATAGTCCACCATATGCGTGACTGATTACCCTCTCTGTTCCAACAAGCTAAGACTTCATGTATGTTCCTTGAAAATGGTCCACCTGATACCCCTCGGATTGATGAGAATCTGCCAAAGTTTACTTTACAGCGTTGAGAAAAGATGATTAATTGTCTCAGTATCAACTCCACAAAAAAAGCATCTGGAGCACAGCTGAAGCCCTGTTTTCATTAGATTATCTTGAGTCAGTGTAGCCTGTTTATCCACCAACCATGTGAAGCATGCTACCTTAAATGGGATTTTCACTTTCCATATCATCTTCCAAGGCCAGCTTCCAGGCTGTTTGTGAGCTAAGTAAGCAGTGATTGTTGGTGAAATAGGATTATCTGTGAAAAATGAATTATATTTTCTCTAATGTCGAACGTAATTAGTTGGCTCATCTCTGATGTTGCTCTATTCGCTGTTAATAGTTTTCTCAATTATTTTTCTTCTGATGTGTTACTCCTCCTTTGAATACTTCACGGGGCGGTTGGTCATCTGGACTGCTGCAAGTTTCTGCCTGTGCATATGTTTTACTCCTTTGAGCGGCGCTGTCCTGACAACTATCGGTTTTGTTATGCTTTATTGCACATACTTTTATCATTCGAAGTTTCTTGTTAAGCTAAAAGTTTTGCACTGTTCTCTGTTTTCCTCTGGTTTTTGAGACTTCATATAATGAAAAATCTCATTTTCTCCATACAGGATGAAAGTAGGTCCCTAGCTGGAGAAAGGGGTTATGGGCAACTCAGAACCTTGCAGAGAGTATTCAGAACGAGACAACAGTATATGGTGTCTCAAGTTCACATGCTTTATCCTGTGAGGGTTGCAATTGGACAGGCACCTGAGCAAGAACTTGAATTTTTCAACAATAGTTCCAGCTCAGGTAATGGATCTTATGATGACTTGTTTCGTCAATATTTTCACGCGTGTGGTCTTGCATGGAAATTTTGAAAAAGGTTTGATTTCATGCAGAGTTTATCAAAAAAATTAGCTACTGTTTGATACTACATTGCCACACCTTTCACTTGTAAGAAATAGGACTGCAGGTGTGATCGAGAAACACTTCTTGGAGACGAAGGTGTAAGAGCTTGGTCTGCTTCTTTTAGTCTCAAGCTTTAAGATCATTCTGACATGGCCATTACTAGAGCAAATTTGAATGCCTAACGTATGGATTGCTAGGCAAAGTCCTCTGGTTTCCTCTTGCCTGGTACCTGGAATAGACTTGGTTTTGTTGCTATATTAGTTGGACCAAGAGTCTCTTTGATTTTTGCATTTAATGCATTGTGCCAAGTAAAATTGAAGACACACGCTAGTGTTCCAAGAAGAATCTAGTCGTTTCTCCTGAGAATCTCCTTATTAGTGCGGATCATTCTTCTTAGCTTTTATTCATGCATTTATTATAAATAGAAATTTGAGTCAAGTTACAGTAGGGATTAAAATAACTAATGGAGGAAATTGAGAGAAAAACCTTTTCTGGTGAACGTGTTATGTATAAACGTGAAAAATACCTGCTATAACTGTGGAGTACTGTAATAATAGGCCTATTTATGAATTCAATCCTTCAATGACGTGGGTAGTTCAGTGCATAATAGGCCTTAAACAATCCTTAATTTGCGTCATTGGATGGCATTCATTCTAGTTTCACGTCCTAAAAGAAAGCTTGCTGTAGCTGTCAATTTTCTTACGATGTCGTCTTTGAAATAAATACCTGAAGTTTTGTTTCATTTGGTTTCTTAGTATGGTTATGTGTGAGGATTCTATAGCTGATGATACCGATTAGTTGATGGTTAAGAGTCTGGAACTTCTGTTGCCTTCCTGCCTAATATACCGATTATTTTGGTAGTAATAGTTTTTGTAGTTTAGATCATGAAATCATCTGTTAAAAATGTGAAGAAACAAAGAGTAGACAAGCCTATCTCAGTTTTCTTTTTGCCTTTTCAGGTGACTCTGCTGGGTCAAAACCTTTAGATCACGGATCCTTGACCATTGCGGGTCTACATTTAACCGTGTTCACTAAGATGAGTTTCTTTACTGATAAGAAGGAGGTTCAGAGGTCTGCAACTGCTCTGGGATATGTTGCACATGTGTGTTCGTTCTCTTTGCTTCAGACTCTTTTGTTTAAATTGTATTTTTCCCATTTTGGCTGTTTTTAATCAATGTAATATTTCACTTCTTATTATTAGATGACTTGTAGAATTTAAGTTCTCCACTTTTGCAGTTCCAAATTTCTACATAACAAAAAAGATTGTGAAAACATGTGCAGACAGATATCCACAGACAACTTAATGAAGTGTCAAATTCAGTTTTAATTTTTTATCATGAAGTGTCAAAAGTCGGTTTTTGTCTTAAAACAATTGGGAAGTCAAGGTAGACATCCTATCTTGAGAGTTTGCTAATAAGCCAGGAACTTATCCTGTGGTAGTTCATCAGCATATGTCTTCTCTGTGTGTGTATTCATTTGCATTGAAGTCATTCTATTACTTTTTGTGGAATACACCAATGATAATTATATTGATAAAAAAAGGGAAATTACCAGTGATGTGTTGTTTCCTTTATGTCATTCTTCTGTTGATCTTTTGCTGTAATCTATCATTAGTCTGCTAGTGTATATTAATCTAGCTTATCTACCTTCATGCAGGTGGTCACACTTATTGCATCTTATTTACAAGTTCCTCTTCGTTATCCCTTGAGGTTTGGAGGATCTCGATCATATATCCGTGATTATGCTCCTTCAGTAGAGCCATCATCATCTGATTTAACATCTAGTTCCGCAGTTTCCACAAATTCACGACCCGTGGAATTTCCTCTATTTTTAGAAGGCCAAGACTCAACAAGAGCGGCGTATGCTGTTTTCTTGCTGAATAAGGTCTGCTTCTTTATCTTACCTCTGCATATCCAGCTGAGTTTATGAGAAAACATGCTCCATGTACAATCTATTCAGACAATTTTATGATACAACATGTTCAATGGTCAATGGAATTGGATCTCTGATACCACTTGCATTTTTAAAAATCTAGATATCTGTTTTTAGAATGTCCATCTAAATATTAATCTTGGTACATTTGAGGAAATTGCCTTGAAGTTTAAGAAGTGAGTTTGAAGATAGTTTCTTCCTTTCCAATTATTACTGACCAGTTTGATTCGAAGATAGGGAAGCATTGACGCATAGTATGTTATATCCACCGCCAAGGAGACCTTTTTTTTGTGATTCCATGATACAAATGAAGCATTGGGTTGTAGTATGTTATCCACCACAAAGGAGAGACTAAGTTATGTGATCCTTCCAAGTTAGCTTTGTTTTCCTATTATAGCAAGAAACAACAAGTTATAAAGAAACTTAGAAAGACAGCTGGGGGCACTCCTCAGTACATAGGTTTTCATATCGTAACCTTTTAATATTTAAAATCTTTTGCAAAATTTACTCTGTTCTTTCCTTTAGTTTTATCCATTATCCACTTGCCCAGGACAAAAATTTCTTGTAGATGCTTGAAATTGTCTATGAGATTTTTCAGCCACTCATACTTGATGCCCTTGTAGGTTAATCTCGACTCTTGATACCTCCTTTCTTCTTGATAAATGCTACTAACCTCTCATGTACACTTTCTTCATAGTAATATTGTTATGTCGTCATTTATTTGCTTATGTTATTAAGGGGTCAGAATTAAAAGATAATCTAGGGATAGAATTTTAGTGTCTTATTTGGTTGCCAAGTTTGGGATAACTTATCCCACCATTTATACCGAGGATAACTTATCCCAGGATTGCTAATCTCATGATAATTAATCTTGGATAACTTTTTCCCAACCAAACGACCCCTTAACAGTCTTGTCCTCTTTAGCCATGAGAGTGGGTGATAGATCATATGACTATGTAGCCTTAGTTCATAGTTCTTGCCGTATAGGTGATTACCAAGCATTACATGCTACGACTTAAAAAACTTGATTGTTAATGTTACCTCCATCAGAGGGTTTTTACTAGCTTTCAGTTGACACTTCTCAGTTCTCATCATTTTTATTTTTTCGTCCACCTCTTCCTCTGCTTGTTTCAAAAGTGACTACTAGCCTACCATTCCTACAGTTTGCTCTCGTCAGTTTCCTCTTCCCTTTACGACACCTTGCTTTCAACGCCCTCCAACTGAATTTGCTCATTTTGTTAAGTTGAAGTTGAGTTACCCTCGACGGGTGTATAGGCTGTGATACTTGTACTAGTGGGGGGTAGAACTCAAAGTAGACATTACGAGAAGTGTGACACTTCTCGTAATGTCTATATTTTCTATCAAGGAGGGTGCACCCTCCAAGTTGAAAAGCCGAGCCACTTGACTAACCCCCCTCATACTAAAGACATCGACATCTTTGTCCTTTTAGCCATGATTATCGATTATGTTTAGCATTTGATTATCGATTTAATTCTTCTCTCCTCTCCTCTCCCTCCCCCAAGTTATTTTTCTTTCGTTTTGGCATTTCCATCGTAACCAAGTTCGAAACAATCTGATTTTTTCTTCTTCTTCTGTGTGCAGGATATAGAACAACTTCTTAATTATATTGGAGGCAGAAGTACAGGGCCAAGACATGTACTAGCTAATTTGAAAGAGCTTCTTAGAATAATACTTTCTCCAGAGTATATAGACACATCATTATGAGATTTATGTAAATGTAGATCATTGTTATTTTTTTATACAGGTGCTAAATTTTCACTTAAAGCACCTTGCTTTAGC</genome_strand>
        <mrna_strand>AAAAAAGAGATTTTCACAAAAAGGAAATTCCCAACCCTTTACCATTTTTCTTGTTCAAAGCAAAATCTCATCACATTTGAAGAAAATTGATCAAAGAAAGTGAAAAATCAAACACAAAAATCCCAAAAATTTCTTCAATCCCATAGTTTTTTCTCCAAAACCCATCTTCCCCTTTTCAAATCTTCTTGATTCTCAAACCCTAATTCATAAATTCTCCTTAAATTTTGCATATTGAGTTTCAAAAATGGTGTTTTTGGAACCTTAATTTTCAAGATTTGGAGGAGTACCATGATGAGAAGTATATGGTGGTGGGAGAAAAACCATGATTTCCTACTACCCTTTTTGAGTTATTGTAAGATTCAATCAAAATCGACTGGTTTAGTTGTGAATGGAACCGAAGAAAGTAGCTTCATCTGGGGAAATTCAGAATAAAAAAGAGAAAAACTTGAAGAGCATACAGTGGGAAGATTATGAACAGGAATTAGTTCGTTTGTGTAGTCTTACATCTGCTCTTAATGAAGCTAAGGAGAAGAAAGAATTGGTTCAGCAGAAACTACAGTCATTTATACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAGCAGAGTCACTAAGTCGTTTGAATGAGCTTGATGAGATGAAAGAAAAACTGGATTCTAGAAAATTAGTGATGGGAAACATGTCAATGCATTCTAAAGTTGTCAAAGAGAAAGTCAAGAAGCAAGAGGAGCAACTTAGTAATGACATCAGGTCACTTTTGGTTGCAGGGACTTCTCTTTCTGCAGCTAGCAAGCGCTTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAAGTAGGTCCCTAGCTGGAGAAAGGGGTTATGGGCAACTCAGAACCTTGCAGAGAGTATTCAGAACGAGACAACAGTATATGGTGTCTCAAGTTCACATGCTTTATCCTGTGAGGGTTGCAATTGGACAGGCACCTGAGCAAGAACTTGAATTTTTCAACAATAGTTCCAGCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTCTGCTGGGTCAAAACCTTTAGATCACGGATCCTTGACCATTGCGGGTCTACATTTAACCGTGTTCACTAAGATGAGTTTCTTTACTGATAAGAAGGAGGTTCAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCACACTTATTGCATCTTATTTACAAGTTCCTCTTCGTTATCCCTTGAGGTTTGGAGGATCTCGATCATATATCCGTGATTATGCTCCTTCAGTAGAGCCATCATCATCTGATTTAACATCTAGTTCCGCAGTTTCCACAAATTCACGACCCGTGGAATTTCCTCTATTTTTAGAAGGCCAAGACTCAACAAGAGCGGCGTATGCTGTTTTCTTGCTGAATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATAGAACAACTTCTTAATTATATTGGAGGCAGAAGTACAGGGCCAAGACATGTACTAGCTAATTTGAAAGAGCTTCTTAGAATAATACTTTCTCCAGAGTATATAGACACATCATTATGAGATTTATGTAAATGTAGATCATTGTTATATTTTTATACAGGTGCTAAAATAAAACTTAAAGCCCCTTGCTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322829" ref_strand="+" ref_description="SGN-U322829        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains dual protein kinase domains, Pfam:PF00069 | chr2:13923529-13926629 FORWARD | Aliases: F24L7.6, F24L7_6(evalue: 7e-114, score=406) genbank/nr: gi|4376160|emb|CAA08772.1| putative kinase [Arabidopsis thaliana](evalue: 3e-112, score=407)">
      <seq>cctttgagaaaacatttgctgctgagttagtggcagttgctcatctccgccatcggaatcttgtgaggctaaggggatggtgttttcatgatgatcagttgttccttgtgtatgattatatgcctaacagtagccttgatcggattttgttccgtaaacaggacaatgcagggtcccctgttcttgattgggaacgtcgaaagaatatagttaatggcttgtcagctgccttgttttatctccatgaacaattggagactcagatcattcatagagatgttaagacaagcaatgtgatgcttgattccaatttcaacgcccggctaggcgattttggtttagctaggtggttggaacatgaactcgagtaccaacccaggacaccttctatgaagaatcagcagtttaggctggctgagacaacaagaattggtggaactatagggtacttacctcctgaaagttttcagaaaaaaggttgtgccactgcaaaatctgatgtgtttagctttgggattgttgtactggagattgtttcaggaaggcgcgctgttgatctcgcgtccccggatgatcaaatcatacttcttgattggatcaggagactttctgatgaaaaaatggctttacaagctggtgacagcagacttgttgatggttcttacaagcttaatgatatggagaggctaatacatattggccttctttgtacacttcatgaacctcaatcaaggcctaatatgaaatgggttgtggaagcactatctggtcatatttatggtaaattacctgatcttccttgttttaagtcccatcctctttatatatctttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="+" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="79457" stop="80889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79755" g_stop="80589" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="835" r_length="835" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="+" ref_id="SGN-U322829" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79755" e_stop="80589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGAGAAAACATTTGCTGCTGAGTTAGTGGCAGTTGCTCATCTCCGCCATCGGAATCTTGTGAGGCTAAGGGGATGGTGTTTTCATGATGATCAGTTGTTCCTTGTGTATGATTATATGCCTAACAGTAGCCTTGATCGGATTTTGTTCCGTAAACAGGACAATGCAGGGTCCCCTGTTCTTGATTGGGAACGTCGAAAGAATATAGTTAATGGCTTGTCAGCTGCCTTGTTTTATCTCCATGAACAATTGGAGACTCAGATCATTCATAGAGATGTTAAGACAAGCAATGTGATGCTTGATTACAATTTCAACGCCCGGCTAGGCGATTTTGGTTTAGCTAGGTGGTTGGAACATGAACTCGAGTACCAACCCAGGACACCTTCTATGAAGAATCAGCAGTTTAGGCTGGCTGAGACAACAAGAATTGGTGGAACTATAGGGTACTTACCTCCTGAAAGTTTTCAGAAAAAAGGTTGTGCCACTGCAAAATCTGATGTGTTTAGCTTTGGGATTGTTGTACTGGAGATTGTTTCAGGAAGGCGCGCTGTTGATCTCGCGTCCCCGGATGATCAAATCATACTTCTTGATTGGATCAGGAGACTTTCTGATGAAAAAATGGCTTTACAAGCTGGTGACAGCAGACTTGTTGATGGTTCTTACAAGCTTAATGATATGGAGAGGCTAATACATATTGGCCTTCTTTGTACACTTCATGAACCTCAATCAAGGCCTAATATGAAATGGGTTGTGGAAGCACTATCTGGTCATATTTATGGTAAATTACCTGATCTTCCTTGTTTTAAGTCCCATCCTCTTTATATATCTTTGTC</genome_strand>
        <mrna_strand>CCTTTGAGAAAACATTTGCTGCTGAGTTAGTGGCAGTTGCTCATCTCCGCCATCGGAATCTTGTGAGGCTAAGGGGATGGTGTTTTCATGATGATCAGTTGTTCCTTGTGTATGATTATATGCCTAACAGTAGCCTTGATCGGATTTTGTTCCGTAAACAGGACAATGCAGGGTCCCCTGTTCTTGATTGGGAACGTCGAAAGAATATAGTTAATGGCTTGTCAGCTGCCTTGTTTTATCTCCATGAACAATTGGAGACTCAGATCATTCATAGAGATGTTAAGACAAGCAATGTGATGCTTGATTCCAATTTCAACGCCCGGCTAGGCGATTTTGGTTTAGCTAGGTGGTTGGAACATGAACTCGAGTACCAACCCAGGACACCTTCTATGAAGAATCAGCAGTTTAGGCTGGCTGAGACAACAAGAATTGGTGGAACTATAGGGTACTTACCTCCTGAAAGTTTTCAGAAAAAAGGTTGTGCCACTGCAAAATCTGATGTGTTTAGCTTTGGGATTGTTGTACTGGAGATTGTTTCAGGAAGGCGCGCTGTTGATCTCGCGTCCCCGGATGATCAAATCATACTTCTTGATTGGATCAGGAGACTTTCTGATGAAAAAATGGCTTTACAAGCTGGTGACAGCAGACTTGTTGATGGTTCTTACAAGCTTAATGATATGGAGAGGCTAATACATATTGGCCTTCTTTGTACACTTCATGAACCTCAATCAAGGCCTAATATGAAATGGGTTGTGGAAGCACTATCTGGTCATATTTATGGTAAATTACCTGATCTTCCTTGTTTTAAGTCCCATCCTCTTTATATATCTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322828" ref_strand="+" ref_description="SGN-U322828        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains dual protein kinase domains, Pfam:PF00069 | chr2:13923529-13926629 FORWARD | Aliases: F24L7.6, F24L7_6(evalue: 1e-91, score=333) genbank/nr: protein(evalue: 2e-96, score=355)">
      <seq>ctaggtccactgccacaaccagcacgagcacgacgcctggtttcaactcaacaatgttcatcacagccacaggagataccatgtatctaagtgctgaaagtggaagcaccagcagcaataatgagtctggaaattgcagcagtaggcgtcaatcgagtaatttcctgatggttgaaactgctagggagatcacattcaaagagatcattgctgccacgaacaatttttcggattcaagaagagttgctgagattgactttggtactgcttaccatggttttcttgaaaacaaccagcatgtcttagtgaaaaggctaggaatgaaaacttgtccagctttaagagtgaggttctcgaatgaacttcagaacttaggacgattacgccacagaaacctggtgcaactccgcggatggtgcaccgagcaaggtgaaatgcttgtcatttatgattactctcagagtagccttttaagtcacctccttttccatcagaatcatcatagggacaatgcctccagtactcttagatggcgtcatcggtataacattgtcaaatcacttgcctctgcgattcgctatctacatgaggaatgggatgaacaggtgatacacagatgcatcacatcatctgccatcattcttgatccagatatgaacccaaggcttggttgctttgctcttgctgaattcttgactcgaaatgagcatagccatcatgttgtggttgataaaaacaaatcagtcagggggatctttggatacatgtcaccggagcatatggattctggtgatgcaacaacaatggctgatgtttatagctttggtgtagttctgcttgagatagttagtggtcagatggcagtagatttccgccggcctgaggctttgttggttaatcgagttcatgaattcgaggtgcaaaaaaagccatacgaacaacttgcagattggacgttgaatggaaaacttcacaccagggaactgatcaggctagtcaaattaagaatggcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="+" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="80328" stop="81943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80628" g_stop="81643" g_length="1016"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1016" r_length="1016" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="+" ref_id="SGN-U322828" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1016</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80628" e_stop="81643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGGTCCACTGCCACAACCAGCACGAGCACGACGCCTGGTTTCAACTCAACAATGTTCATCACAGCCACAGGAGATACCATGTATCTAAGTGCTGAAAGTGGAAGCACCAGCAGCAATAATGAGTCTGGAAATTGCAGCAGTAGGCGTCAATCGAGTAATTTCCTGATGGTTGAAACTGCTAGGGAGATCACATTCAAAGAGATCATTGCTGCCACGAACAATTTTTCGGATTCAAGAAGAGTTGCTGAGATTGACTTTGGTACTGCTTACCATGGTTTTCTTGAAAACAACCAGCATGTCTTAGTGAAAAGGCTAGGAATGAAAACTTGTCCAGCTTTAAGAGTGAGGTTCTCGAATGAACTTCAGAACTTAGGACGATTACGCCACAGAAACCTGGTGCAACTCCGCGGATGGTGCACCGAGCAAGGTGAAATGCTTGTCATTTATGATTACTCTCAGAGTAGCCTTTTAAGTCACCTCCTTTTCCATCAGAATCATCATAGGGACAATGCCTCCAGTACTCTTAGATGGCGTCATCGGTATAACATTGTCAAATCACTTGCCTCTGCGATTCGCTATCTACATGAGGAATGGGATGAACAGGTGATACACAGATGCATCACATCATCTGCCATCATTCTTGATCCAGATATGAACCCAAGGCTTGGTTGCTTTGCTCTTGCTGAATTCTTGACTCGAAATGAGCATAGCCATCATGTTGTGGTTGATAAAAACAAATCAGTCAGGGGGATCTTTGGATACATGTCACCGGAGCATATGGATTCTGGTGATGCAACAACAATGGCTGATGTTTATAGCTTTGGTGTAGTTCTGCTTGAGATAGTTAGTGGTCAGATGGCAGTAGATTTCCGCCGGCCTGAGGCTTTGTTGGTTAATCGAGTTCATGAATTCGAGGTGCAAAAAAGGCCATACGAACAACTTGCAGATTGGAGGTTGAATGGAAACTTCAACACCAGGGAACTGATCAGGCTAGTCAAATTAGGAATGGCTTGC</genome_strand>
        <mrna_strand>CTAGGTCCACTGCCACAACCAGCACGAGCACGACGCCTGGTTTCAACTCAACAATGTTCATCACAGCCACAGGAGATACCATGTATCTAAGTGCTGAAAGTGGAAGCACCAGCAGCAATAATGAGTCTGGAAATTGCAGCAGTAGGCGTCAATCGAGTAATTTCCTGATGGTTGAAACTGCTAGGGAGATCACATTCAAAGAGATCATTGCTGCCACGAACAATTTTTCGGATTCAAGAAGAGTTGCTGAGATTGACTTTGGTACTGCTTACCATGGTTTTCTTGAAAACAACCAGCATGTCTTAGTGAAAAGGCTAGGAATGAAAACTTGTCCAGCTTTAAGAGTGAGGTTCTCGAATGAACTTCAGAACTTAGGACGATTACGCCACAGAAACCTGGTGCAACTCCGCGGATGGTGCACCGAGCAAGGTGAAATGCTTGTCATTTATGATTACTCTCAGAGTAGCCTTTTAAGTCACCTCCTTTTCCATCAGAATCATCATAGGGACAATGCCTCCAGTACTCTTAGATGGCGTCATCGGTATAACATTGTCAAATCACTTGCCTCTGCGATTCGCTATCTACATGAGGAATGGGATGAACAGGTGATACACAGATGCATCACATCATCTGCCATCATTCTTGATCCAGATATGAACCCAAGGCTTGGTTGCTTTGCTCTTGCTGAATTCTTGACTCGAAATGAGCATAGCCATCATGTTGTGGTTGATAAAAACAAATCAGTCAGGGGGATCTTTGGATACATGTCACCGGAGCATATGGATTCTGGTGATGCAACAACAATGGCTGATGTTTATAGCTTTGGTGTAGTTCTGCTTGAGATAGTTAGTGGTCAGATGGCAGTAGATTTCCGCCGGCCTGAGGCTTTGTTGGTTAATCGAGTTCATGAATTCGAGGTGCAAAAAAAGCCATACGAACAACTTGCAGATTGGACGTTGAATGGAAAACTTCACACCAGGGAACTGATCAGGCTAGTCAAATTAAGAATGGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337699" ref_strand="-" ref_description="SGN-U337699        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein, contains dual protein kinase domains, Pfam:PF00069 | chr2:13923529-13926629 FORWARD | Aliases: F24L7.6, F24L7_6(evalue: 6e-47, score=184) genbank/nr: protein(evalue: 2e-57, score=225)">
      <seq>aatgggatgaacaggtgatacacagatgcatcacatcatctgccatcattcttgatccagatatgaacccaaggcttggttgctttgctcttgctgaattcttgactcgaaatgagcatagccatcatgtttatagctttggtgtagttctgcttgagatagttagtggtcagatggcagtagatttccgccggcctgaggctttgttggttaatcgagttcatgaattcgaggtgcaaaaaaggccatacgaacaacttgcagattggaggttgaatggaaacttcaacaccagggaactgatcaggctagtcaaattaggaatggcttgcactagatacgatcctgaatcaagaccgagcatgaggcagatagtgaacattctcgatggacatgatcaatggttaatggaaaatggacgaaagaaggagagcccggaagaatggagaacaagaaatgcttctgctttgtccctcgtaaggagaatccaagctcttggtatacaatgatcatcgcgtaagatgtgaagtagttacatgtagatagaaatgaaaatgaagctttatatctcaatgtgtttgttcttctatgtattcatggtatgactatgtttcttcagcagaacatttgtgtaatttagtgtgggcaactttgatagcatcagatatgcgattttttatgaaattgatgagttttttttcgatacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="+" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="80919" stop="85235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81219" g_stop="81346" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81347" i_stop="81439" i_length="93">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81440" g_stop="82036" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="725" r_length="597" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="+" ref_id="SGN-U337699" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337699" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81219" e_stop="81346"/>
          <exon e_start="81440" e_stop="82036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGATGAACAGGTGATACACAGATGCATCACATCATCTGCCATCATTCTTGATCCAGATATGAACCCAAGGCTTGGTTGCTTTGCTCTTGCTGAATTCTTGACTCGAAATGAGCATAGCCATCATGTTGTGGTTGATAAAAACAAATCAGTCAGGGGGATCTTTGGATACATGTCACCGGAGCATATGGATTCTGGTGATGCAACAACAATGGCTGATGTTTATAGCTTTGGTGTAGTTCTGCTTGAGATAGTTAGTGGTCAGATGGCAGTAGATTTCCGCCGGCCTGAGGCTTTGTTGGTTAATCGAGTTCATGAATTCGAGGTGCAAAAAAGGCCATACGAACAACTTGCAGATTGGAGGTTGAATGGAAACTTCAACACCAGGGAACTGATCAGGCTAGTCAAATTAGGAATGGCTTGCACTAGATACGATCCTGAATCAAGACCGAGCATGAGGCAGATAGTGAACATTCTCGATGGACATGATCAATGGTTAATGGAAAATGGACGAAAGAAGGAGAGCCCGGAAGAATGGAGAACAAGAAATGCTTCTGCTTTGTCCCTCGTAAGGAGAATCCAAGCTCTTGGTATACAATGATCATCGCGTAAGATGTGAAGTAGTTACATGTAGATAGAAATGAAAATGAAGCTTTATATCTCAATGTGTTTGTTCTTCTATGTATTCATGGTATGACTATGTTTCTTCAGCAGAACATTTGTGTAATTTAGTGTGGGCAACTTTGATAGCATCAGATATGCGATTTTTTATGAAATTGATGAGTTTTTTTTCGATACAATAGAAGAATATACCTTA</genome_strand>
        <mrna_strand>AATGGGATGAACAGGTGATACACAGATGCATCACATCATCTGCCATCATTCTTGATCCAGATATGAACCCAAGGCTTGGTTGCTTTGCTCTTGCTGAATTCTTGACTCGAAATGAGCATAGCCATCAT.............................................................................................GTTTATAGCTTTGGTGTAGTTCTGCTTGAGATAGTTAGTGGTCAGATGGCAGTAGATTTCCGCCGGCCTGAGGCTTTGTTGGTTAATCGAGTTCATGAATTCGAGGTGCAAAAAAGGCCATACGAACAACTTGCAGATTGGAGGTTGAATGGAAACTTCAACACCAGGGAACTGATCAGGCTAGTCAAATTAGGAATGGCTTGCACTAGATACGATCCTGAATCAAGACCGAGCATGAGGCAGATAGTGAACATTCTCGATGGACATGATCAATGGTTAATGGAAAATGGACGAAAGAAGGAGAGCCCGGAAGAATGGAGAACAAGAAATGCTTCTGCTTTGTCCCTCGTAAGGAGAATCCAAGCTCTTGGTATACAATGATCATCGCGTAAGATGTGAAGTAGTTACATGTAGATAGAAATGAAAATGAAGCTTTATATCTCAATGTGTTTGTTCTTCTATGTATTCATGGTATGACTATGTTTCTTCAGCAGAACATTTGTGTAATTTAGTGTGGGCAACTTTGATAGCATCAGATATGCGATTTTTTATGAAATTGATGAGTTTTTTTTCGATACAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338975" ref_strand="+" ref_description="SGN-U338975        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 7e-09, score=64.3)">
      <seq>ccaccgacccattcaactcctttaccatgactcgcggaaatcagagggaaaaggatcgggaaagagctgcagctcgtgctggtaaaagcaagaagggagctgatgatggtttgactcctgagcagcgccgtgaaagggatgcgaaagctctgcaagagaaggctgcaaagaaagcaccaaaagaggctgccggaggtagcaatgctggaactaaggatcccaaaaaataaaaagctaggggtggggtccttcatggcagccagaaattggccattccccttggttggccatgttattcactgtttaaatcttgtgatgcactacaacttaatacgtctgaattgtcaatccattcggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="93300" stop="92239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92995" g_stop="92891" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="136" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92890" i_stop="92764" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92763" g_stop="92539" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="361" r_length="225" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U338975" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92995" e_stop="92891"/>
          <exon e_start="92763" e_stop="92539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGGAAATCAGAGGGAAAAGGATCGGGAAAGAGCTGCAGCTCGTGCTGGTAAAAGCAAGAAGGGAGCTGATGATGGTTTGACTCCTGAGCAGCGCCGTGAAAGGTTTTCCTAATTTTCTTAACTGTACTTGTTGTATCTTACTTTATTCCAAGATTTGGTTTTATGTGTTTAGCTTTTTGTTTATCATTGGATTTTGAGTTTTTATCTTTATATGTTTGTTTGAATGTAGGGATGCGAAAGCTCTGCAAGAGAAGGCTGCAAAGAAAGCAGCAAAAGAGGCCGCCGGAGGTAGCAATGCTGGAACTAAGGATACCAAGAAATAGAAAGCTAGGTGTTGTGTACTTCATTGCAGTCAGTAATTTGTCATTCCCCTTTGTTTGTCATGTTATTCACTGTTTAAATGTTGTGATGCACTACAACTTAATACGTCTGAATTGTCAATCCATTCGGTTTT</genome_strand>
        <mrna_strand>TCGCGGAAATCAGAGGGAAAAGGATCGGGAAAGAGCTGCAGCTCGTGCTGGTAAAAGCAAGAAGGGAGCTGATGATGGTTTGACTCCTGAGCAGCGCCGTGAAAG...............................................................................................................................GGATGCGAAAGCTCTGCAAGAGAAGGCTGCAAAGAAAGCACCAAAAGAGGCTGCCGGAGGTAGCAATGCTGGAACTAAGGATCCCAAAAAATAAAAAGCTAGGGGTGGGGTCCTTCATGGCAGCCAGAAATTGGCCATTCCCCTTGGTTGGCCATGTTATTCACTGTTTAAATCTTGTGATGCACTACAACTTAATACGTCTGAATTGTCAATCCATTCGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329301" ref_strand="+" ref_description="SGN-U329301        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT4G13620.1 | Symbol: None | encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. | chr4:7932134-7933538 FORWARD | Aliases: F18A5.10, F18A5_10 (evalue: 4e-24, score=108) genbank/nr: gi|15236319|ref|NP_193098.1| AP2 domain transcription factor RAP2, putative [Arabidopsis thaliana] gi|25407531|pir||G85147 hypothetical protein AT4g13620 [imported] - Arabidopsis thaliana gi|5748494|emb|CAB36826.2| putative protein [Arabidopsis thaliana] gi|7268066|emb|CAB78404.1| putative protein [Arabidopsis thaliana](evalue: 3e-22, score=108)">
      <seq>ttttttttcccctcaataccaatctattggatttctcatggagaatcagtctctaaaatcagaatccatcatgcaaaaagaattgccaacttgttataaacaagtagccatagaatcattatctagatttttcaaggatccacacatttttagtgatttaaatcatgaaattacttttataaattcttctccaacaaaattttctgaatttcttccacttaatttccatcaaaatgaatcgtcattatcattatcatcatcatcatcatcattatcgacttcttcaagttatcaacatcatcaagatcaagggaataataacaacatttttcctttaaataattttcttgatcatcaaacatgtgcttcttcaacaaattcactatcaagtaattacccaactttagggttatttttgcaagagccttccattttagagatttcaaaaagggcagctgaatctctaagcaacaagaatcacaagtcatcatccgcggcgttattccctatgtcttcatcaataggtcatgagagccaaattcattataaagaggttgcaactacaaatccaacaaattggttgaaaatgaatcaaaccataacaaattgtaccacaacaaaaggttttagtgactattggctcagcactacaaaaactcaaccaatgaaattcaaaggatcatcaagaaaatcatcacttgttcattatgaaaagtcatcgtcgtcgtcatcatcatcatcttcttcttcttctatgatcgcttcccaagggaagctttttcgaggagtaagacaaaggcattggggaaaatgggtggcggaaataaggctaccaagaaataggactatggtttggctagggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="+" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="94393" stop="96230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94693" g_stop="95175" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95176" i_stop="95547" i_length="372">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95548" g_stop="95930" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="866" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="+" ref_id="SGN-U329301" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94693" e_stop="95175"/>
          <exon e_start="95548" e_stop="95930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCCCCTCAATACCAATCTATTGGATTTCTCATGGAGAATCAGTCTCTAAAATCAGAATCCATCATGCAAAAAGAATTGCCAACTTGTTATAAACAAGTAGCCATAGAATCATTATCTAGATTTTTCAAGGATCCACACATTTTTAGTGATTTAAATCATGAAATTACTTTTATAAATTCTTCTCCAACAAAATTTTCTGAATTTCTTCCACTTAATTTCCATCAAAATGAATCGTCATTATCATTATCATCATCATCATCATCATTATCGACTTCTTCAAGTTATCAACATCATCAAGATCAAGGGAATAATAACAACATTTTTCCTTTAAATAATTTTCTTGATCATCAAACATGTGCTTCTTCAACAAATTCACTATCAAGTAATTACCCAACTTTAGGGTTATTTTTGCAAGAGCCTTCCATTTTAGAGATTTCAAAAAGGGCAGCTGAATCTCTAAGCAACAAGAATCACAAGTATGATACTAATTCTATTCCTTTTATTTATTTGCCATTTTATTCACTAATTTTCTCTTTTATCAAATTGAGTTTACCAATAGTACATATTTAGACTTTCTAGGATACAGTATCGAAATCAGTAATTCTATCAACAACATGTTAGAATGTAACATCTTTCACTTATGATCAATATGATTCAAAAATGTATATAGTTGTGTTTTTTTTTTTTAGCGAAGGGGATTCAGTTGCACCCCTTGTAATCAATAGGTAGTTACACCACTATCTAGGATGCACGAGTCCCAATACATTGATAAAAGAAGAAAATAGATAAGTATTGTAAATATTACGATATATCTTCAACCTCTTAAATTTTTTTTCATGTTTTGCCAGGTCATCATCCGCGGCGTTATTCCCTATGTCTTCATCAATAGGTCATGAGAGCCAAATTCATTATAAAGAGGTTGCAACTACAAATCCAACAAATTGGTTGAAAATGAATCAAACCATAACAAATTGTACCACAACAAAAGGTTTTAGTGACTATTGGCTCAGCACTACAAAAACTCAACCAATGAAATTCAAAGGATCATCAAGAAAATCATCACTTGTTCATTATGAAAAGTCATCGTCGTCGTCATCATCATCATCTTCTTCTTCTTCTATGATCGCTTCCCAAGGGAAGCTTTTTCGAGGAGTAAGACAAAGGCATTGGGGAAAATGGGTGGCGGAAATAAGGCTACCAAGAAATAGGACTAGGGTTTGGCTAGGGACAT</genome_strand>
        <mrna_strand>TTTTTTTTCCCCTCAATACCAATCTATTGGATTTCTCATGGAGAATCAGTCTCTAAAATCAGAATCCATCATGCAAAAAGAATTGCCAACTTGTTATAAACAAGTAGCCATAGAATCATTATCTAGATTTTTCAAGGATCCACACATTTTTAGTGATTTAAATCATGAAATTACTTTTATAAATTCTTCTCCAACAAAATTTTCTGAATTTCTTCCACTTAATTTCCATCAAAATGAATCGTCATTATCATTATCATCATCATCATCATCATTATCGACTTCTTCAAGTTATCAACATCATCAAGATCAAGGGAATAATAACAACATTTTTCCTTTAAATAATTTTCTTGATCATCAAACATGTGCTTCTTCAACAAATTCACTATCAAGTAATTACCCAACTTTAGGGTTATTTTTGCAAGAGCCTTCCATTTTAGAGATTTCAAAAAGGGCAGCTGAATCTCTAAGCAACAAGAATCACAA....................................................................................................................................................................................................................................................................................................................................................................................GTCATCATCCGCGGCGTTATTCCCTATGTCTTCATCAATAGGTCATGAGAGCCAAATTCATTATAAAGAGGTTGCAACTACAAATCCAACAAATTGGTTGAAAATGAATCAAACCATAACAAATTGTACCACAACAAAAGGTTTTAGTGACTATTGGCTCAGCACTACAAAAACTCAACCAATGAAATTCAAAGGATCATCAAGAAAATCATCACTTGTTCATTATGAAAAGTCATCGTCGTCGTCATCATCATCATCTTCTTCTTCTTCTATGATCGCTTCCCAAGGGAAGCTTTTTCGAGGAGTAAGACAAAGGCATTGGGGAAAATGGGTGGCGGAAATAAGGCTACCAAGAAATAGGACTATGGTTTGGCTAGGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323152" ref_strand="-" ref_description="SGN-U323152        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to YfhF (GI:2804536) (Bacillus subtilis) | chr2:9117394-9119776 REVERSE | Aliases: None(evalue: 1e-140, score=299) genbank/nr: gi|18399648|ref|NP_565505.1| expressed protein [Arabidopsis thaliana] gi|11692898|gb|AAG40052.1| At2g21280 [Arabidopsis thaliana] gi|11908096|gb|AAG41477.1| unknown protein [Arabidopsis thaliana] gi|12642906|gb|AAK00395.1| unknown protein [Arabidopsis thaliana] gi|20197908|gb|AAD23676.2| expressed protein [Arabidopsis thaliana] gi|23397230|gb|AAN31897.1| unknown protein [Arabidopsis thaliana] gi|34787115|emb|CAD56855.1| SulA protein [Arabidopsis thaliana](evalue: 1e-138, score=299)">
      <seq>gcacgagggaatagcaagtacattttcatggacaaattccatttcttctactattcaattccctcaagctcacactcaattaattggaggtgagtctaaaagagttacattttggtgtgtgaatgcaaacatggactctgcttcatctccaaaggaaagtaagatgattgtatcagttactggagctactggttttgttgggaaaagattggtgcaaagattgcatgcagataagcatcaaattcgagtgttgacaaggtcaagatccacagcacaatcaatatttccggttaaagagttccccggaatagtaattgccgaggagccagagtggaaaaactgcatagaaggttcaacagctgttgtgaatttggctggaacatccattagtactagatggtcctatgagatcaagaaggatatcaagcaaagcaggattagagtaacctccaaggttgtagaattaatcaataattcaaaggatgatgcccgtcccaaagttttaataagtgcaacagcagttggttattatggaaccagcgagacggaagtgtttgatgagaaaagtccatcgggaaatgattacttggctgaggtttgtagagaatgggaggcatctgctctcaaagtcaataaggatgttaggcttgctctaattcgtattggcgttgtcctcggaaaagacggtggtgctttagctaatgattcctctcttcatgatgtttgctggtggacctttgggctctggaaagcaatggttttcttggattcatctcgatgacctcgtggatttgatatacgaagctttatccaacccatcctataaaggggtgataaatggaacagcaccgaatcctgtacgtctgggagaaatgtgtgaacaactaggatcgacgttaggaagaccttcgtggctacctgtaccagaaattgcactgaaagctgtacttggagagggtgcatcagtggtgttggacggacaaaaggtggttccaacgaaggctaaggagttgggtttttcgttcaaatacaggtatatcaaagacgcgttgaaagcaatcatgtcatgagactcatcaaccatcaacccatattcattttcaatggccatgaaatggaacgaaaacacgaataatttgttgttgttgttgtagtcgtcgtcgtctggggatatgagtttttttccttatttttgatgagccaaaattcaatttataaacataatgtcattgtcaaaagtatatgcctagttatgctttacttgaaccgagggtctctcttcctaatacggtagcagtaagacggtgtatatatcacttgtgagtatattgttattgtatggacgaacttttcnaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="110318" stop="93204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110018" g_stop="109933" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109932" i_stop="109844" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109843" g_stop="109775" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="154" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109774" i_stop="108927" i_length="848">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108926" g_stop="108851" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="230" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108850" i_stop="108245" i_length="606">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108244" g_stop="108185" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="290" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="108184" i_stop="108058" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108057" g_stop="107939" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="409" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="107938" i_stop="107819" i_length="120">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107818" g_stop="107774" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="454" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107773" i_stop="107679" i_length="95">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107678" g_stop="107600" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="533" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="107599" i_stop="107454" i_length="146">
            <donor d_prob="0.126" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="107453" g_stop="107392" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="595" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="107391" i_stop="107307" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="107306" g_stop="107204" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="698" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="107203" i_stop="107007" i_length="197">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="107006" g_stop="106946" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="757" r_length="59" r_score="0.967"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="106945" i_stop="106592" i_length="354">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="106591" g_stop="106521" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="828" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="106520" i_stop="106419" i_length="102">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="106418" g_stop="106279" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="968" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="106278" i_stop="106126" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="106125" g_stop="105743" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="969" r_stop="1351" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="105742" i_stop="105666" i_length="77">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="105665" g_stop="105638" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1352" r_stop="1379" r_length="28" r_score="0.536"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U323152" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1382</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323152" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110018" e_stop="109933"/>
          <exon e_start="109843" e_stop="109775"/>
          <exon e_start="108926" e_stop="108851"/>
          <exon e_start="108244" e_stop="108185"/>
          <exon e_start="108057" e_stop="107939"/>
          <exon e_start="107818" e_stop="107774"/>
          <exon e_start="107678" e_stop="107600"/>
          <exon e_start="107453" e_stop="107392"/>
          <exon e_start="107306" e_stop="107204"/>
          <exon e_start="107006" e_stop="106946"/>
          <exon e_start="106591" e_stop="106521"/>
          <exon e_start="106418" e_stop="106279"/>
          <exon e_start="106125" e_stop="105743"/>
          <exon e_start="105665" e_stop="105638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCATGGGAATAGCAAGTACATTTTCATGGACAAATTCCATTTCTTCTACTATTCAATTCCCTCAAGCTCACACTCAATTAATTGTAAGTATTCTTATATCCATAAGTATTTAATTTCTCAATTTTTATTGTTTTTATAATTCATCTATGTTTTTTGATTCTATTGAAAATAGGGAGGTGAGTCTAAAAGAGTTACATTTTGGTGTGTGAATGCAAACATGGACTCTGCTTCATCTCCAAAGGTACAATCCAAATTTACTCAATTTATCCTCTCTTTTTTGTCATATGTGAAAACTAAAATTGGTTATACTTTGTGGAAATAAGTTTTAAGATATTACTCTGTCCGTTCCAATTTATGTGTCTTAGTTTGACTGGATACAAAGTGATTGAGAACTTCGAGGTCTCAGGTTTAAAACTCTTTGGAGACAAAAACACTAGGTGCTTTTACCATATATACTAGCCTCGGTGGACAGAGTTACCTGTTACTTGTTGCTTGTTGAAGGTGGTAGGTATCCGATGAAATTAGTCGAGGTGTGTGAAAACTGGCCCGAACACCACGGTCATTAAAAAAATAAAATAAAGATGCCCCCAAGGTCTAGCTCAAGTGGCAAAAGGCGGAGGATTTGTGGCTTAGGTTGCAGGTTCAAGCCCCACCCCACCCCACGCAAAGCGAAGCCTGGTATTTAAGTGGAGAAAGGGTAGAGAGGCGGGCCATTAACCACCGAGTTTAGAAGGTTGTGATTGGTCCAAAGGGTGGGTCATAGACGGATTTCTCGGTTATTAAAAAACATAAAGATTTGCATCGGCCTTTGAGTCTTGTGGTTATAAACTTGCAATGTATAATGCTGAAATTGGAAAACTTAGTAAATATAGAAAGATATTTTTTTCTTTGGGGACAGACCTAAAAGGAATGTAAGACACTTAAATTGGGCTACGGAGGGACTAGAGTAATTAGTAGTAAATTTTTTTCGTGTTTTAATTTTTGGTGCATTGATGCTTTCTGATGTCAAACTAATGATCTAGTGATGTAACAATGCTTAGGTTAACCGTTAACGGAGAGGGCATTTACTTCTTTCTTTTACTGGTTCAGGAAAGTAAGATGATTGTATCAGTTACTGGAGCTACTGGTTTTGTTGGGAAAAGATTGGTGCAAAGATTGCATGCAGGTATACCAACTACTTCTTCGTTACAACGGTTTTGATCTTCGTATAAATATATATATTCCGTCCAACTCAATTTACGTGGCAATATTTGATACCAACTCGAGACTAAATGTATCAATCCAAATCAAACTATTTGTTTATCGACCAAGTTGAGCCTACAATAAGTCAAAGTCGTAAACAACAACATACCTATTGTGATCCCACGAGTGAGATATGAGGAAGGTAGAGTGTATACCCTACCTTGTAAGGTAGAGAAACTGTCTCTCTGATAGACCCTCGGTTCAAGGAATAAGTCAAAGTCAATTACTAAATCGGAATGTAAAAGTAACTAGTTTCCAAATGCATATATCATTCAAAGTATAAAGTGCTAATCAATCGGAATGTAGATAGTATCGATAAACATGTAGTAAATGTGTCTGTTTGTGTGTGTATTACTTGAGCTGTAGGCTGAGGATGTGCACGCACATGCTTCCTTCATTATCGGTCTGCCCATCCTTCGTTATGTGATTCTTGATTATAAGTCTGCATTCAACACACGGTTGCATAACTGCTATTGTAGAAAAAGCAGGTTGTTAGTTAAACTTAAACTTGTCGTTCTAAATAATGCAGATAAGCATCAAATTCGAGTGTTGACAAGGTCAAGATCCACAGCACAATCAATATTTCCGGGTAAGAAGGTAAAGATTGTTTTTTATTCGCCCATTATACATTAGCATTAATTCTTCTTTCTTCTGTGGAAAATGCTGATATTGTACTTTAAAATTTCACCTCTTCGTATTCTCATTGAAATGTGAAGTTAAAGAGTTCCCCGGAATAGTAATTGCCGAGGAGCCAGAGTGGAAAAACTGCATAGAAGGTTCAACAGCTGTTGTGAATTTGGCTGGAACATCCATTAGTACTAGATGGTCCTATGAGGTATTAGGACGACTTCCTTTTCTCGTTTCGATTTGTTTGTCTTACTTACTTTATATATCTTCTGTGTGACGAATGATCAGTCGTTCATTCATGTATCAACTTTTCAATGTAATGCTTCAGATCAAGAAGGATATCAAGCAAAGCAGGATTAGAGTAACCTCCAAGGTCTCCCTAATAGCAACGCGAATTCATTGTAAGAATTTATCTATAACAACAAATGATACGAGCAAGAATCTGAGAAACGTCGATTGATCCTGCAGGTTGTAGAATTAATCAATAATTCAAAGGATGATGCCCGTCCCAAAGTTTTAATAAGTGCAACAGCAGTTGGTTATTATGGTACGGGTGACCAAATTCATGTTTTGCTTCCATACCGTATTGTTAAAAGTGTTAAGCTGCATATCCTCGTATCGCGATAATCTTTCTGTTACTGGTAAAAGCTTCAGTAAAGTTGAGTGATAAGTCCACTTATATTATTACCTTAGGAACCAGCGAGACGGAAGTGTTTGATGAGAAAAGTCCATCGGGAAATGATTACTTGGCTGAGGTAAATATAACAGTTGCATACATATAGAACATGTTATGTGTTTTTAATCTTCATGTTTGATTTCTCACGTCATGATTTCTTTCAGGTTTGTAGAGAATGGGAGGCATCTGCTCTCAAAGTCAATAAGGATGTTAGGCTTGCTCTAATTCGTATTGGCGTTGTCCTCGGAAAAGACGGTGGTGCTTTAGGTAGTACACTTTCTTTCTTTCTTTTCCTGTCGATAACAAAATAATAGCCTGTTTTGCCTAGCTATGTGTAGCGTCAAAACGTCTTTTTTGTTTTCCCACCCTCGGTTATATGTGAACCGATCTGTGACAGAACATGTCATATCTTTAACATTTTGATACTTAACATTGTTAAAATCTTTCGATTTTTCTTTCTGCAGCTAAGATGATTCCTCTCTTCATGATGTTTGCTGGTGGACCTTTGGGCTCTGGAAAGCAATGGTACTGCCCTTCAATTTTTGTCCATGTTATAAGTGTTCCCCGTTATGGATCAGAGATACGTTATCTGTATTCGTCTGTTTGAATCTTAGTCCTAAGATTACCGAGGGCATGACCTTAGATAGAAGGGTCTGGAGGTCGTGCATTAGGGTAGAAGGTTAGTTGGTAGTTGACCGTTCTCTGTGTTGTCTGTAATGCTGTTGATTTCACATTATTTCGTTGTTGTCTCTACGAGGTAGGGTAAGGTCTATGTAAACTCTACTCTCCCCAGATACCACTTGTGGGATTTCACTACGTATGTTGTTGTTGTTGATTTCTAATTCTCACTTGGTAGATTCTACTGGCTTCACTACACAGGTTTTCTTGGATTCATCTCGATGACCTCGTGGATTTGATATACGAAGCTTTATCCAACCCATCCTATAAAGGTAAAGTCATTACCAGGCATCTATACCATGGATTTCGTTCGGAGTAGTTTTCTAATGAGTTCATATAGTCAGTCAACTGATAACATAGTCGTGCAATGGCAGGGGTGATAAATGGAACAGCACCGAATCCTGTACGTCTGGGAGAAATGTGTGAACAACTAGGATCGACGTTAGGAAGACCTTCGTGGCTACCTGTACCAGAAATTGCACTGAAAGCTGTACTTGGAGAGGGTGCATCAGTGGTATGATATCTGTAACTTCAACTTATTGGTACTTATTTGTCTGTATTGATCGGAAACAGTCTCTCTACTTCTCAACGTCTGCATACACTCTACTCTCTCCAGACTCCATTGGGTACGTTGTTGTTGATATTGCTAGAGTAATGTGTATTTTAGGTGTTGGACGGACAAAAGGTGGTTCCAACGAAGGCTAAGGAGTTGGGTTTTTCGTTCAAATACAGGTATATCAAAGACGCGTTGAAAGCAATCATGTCATGAGACTCATCAACCATCAACCCATATTCATTTTCAATGGCCATGAAATGGAACGAAAACACGAATAATTTGTTGTTGTTGTTGTAGTCGTCGTCGTCTGGGGATATGAGTTTTTTTCCTTATTTTTGATGAGCCAAAATTCAATTTATAAACATAATGTCATTGTCAAAAGTATATGCCTAGTTATGCTTTACTTGAACCGAGGGTCTCTCTTCCTAATACGGTAGCAGTAAGACGGTGTATATATCACTTGTGAGTATATTGTTATTGTATGGACGAACTTTTCACGAGCCCCGAGGTGAATTGATTTTAAAAGTTGCATATGTATTTACATTTAGATTATGAATTTACAATTGTTTAGTCCAATTAGCAAACTAGACGTAACAAAT</genome_strand>
        <mrna_strand>GCACGA-GGGAATAGCAAGTACATTTTCATGGACAAATTCCATTTCTTCTACTATTCAATTCCCTCAAGCTCACACTCAATTAATT.........................................................................................GGAGGTGAGTCTAAAAGAGTTACATTTTGGTGTGTGAATGCAAACATGGACTCTGCTTCATCTCCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTAAGATGATTGTATCAGTTACTGGAGCTACTGGTTTTGTTGGGAAAAGATTGGTGCAAAGATTGCATGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCATCAAATTCGAGTGTTGACAAGGTCAAGATCCACAGCACAATCAATATTTCCGG...............................................................................................................................TTAAAGAGTTCCCCGGAATAGTAATTGCCGAGGAGCCAGAGTGGAAAAACTGCATAGAAGGTTCAACAGCTGTTGTGAATTTGGCTGGAACATCCATTAGTACTAGATGGTCCTATGAG........................................................................................................................ATCAAGAAGGATATCAAGCAAAGCAGGATTAGAGTAACCTCCAAG...............................................................................................GTTGTAGAATTAATCAATAATTCAAAGGATGATGCCCGTCCCAAAGTTTTAATAAGTGCAACAGCAGTTGGTTATTATG..................................................................................................................................................GAACCAGCGAGACGGAAGTGTTTGATGAGAAAAGTCCATCGGGAAATGATTACTTGGCTGAG.....................................................................................GTTTGTAGAGAATGGGAGGCATCTGCTCTCAAAGTCAATAAGGATGTTAGGCTTGCTCTAATTCGTATTGGCGTTGTCCTCGGAAAAGACGGTGGTGCTTTAG.....................................................................................................................................................................................................CT-A-ATGATTCCTCTCTTCATGATGTTTGCTGGTGGACCTTTGGGCTCTGGAAAGCAATG..................................................................................................................................................................................................................................................................................................................................................................GTTTTCTTGGATTCATCTCGATGACCTCGTGGATTTGATATACGAAGCTTTATCCAACCCATCCTATAAAG......................................................................................................GGGTGATAAATGGAACAGCACCGAATCCTGTACGTCTGGGAGAAATGTGTGAACAACTAGGATCGACGTTAGGAAGACCTTCGTGGCTACCTGTACCAGAAATTGCACTGAAAGCTGTACTTGGAGAGGGTGCATCAGTG.........................................................................................................................................................GTGTTGGACGGACAAAAGGTGGTTCCAACGAAGGCTAAGGAGTTGGGTTTTTCGTTCAAATACAGGTATATCAAAGACGCGTTGAAAGCAATCATGTCATGAGACTCATCAACCATCAACCCATATTCATTTTCAATGGCCATGAAATGGAACGAAAACACGAATAATTTGTTGTTGTTGTTGTAGTCGTCGTCGTCTGGGGATATGAGTTTTTTTCCTTATTTTTGATGAGCCAAAATTCAATTTATAAACATAATGTCATTGTCAAAAGTATATGCCTAGTTATGCTTTACTTGAACCGAGGGTCTCTCTTCCTAATACGGTAGCAGTAAGACGGTGTATATATCACTTGTGAGTATATTGTTATTGTATGGACGAACTTT.............................................................................TCNAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329528" ref_strand="+" ref_description="SGN-U329528        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>cacattagaccgccttttttctcgttgtaatcccaattttggtagttattttttgtgttgtcaagttgtagaaactgagatcttgtttgctgaaaggtatagtcatcaatcacttgactattgatgcatctgtgctctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="111186" stop="93209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110886" g_stop="110742" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110741" i_stop="110509" i_length="233">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110508" g_stop="110482" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="172" r_length="27" r_score="0.704"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U329528" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110886" e_stop="110742"/>
          <exon e_start="110508" e_stop="110482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTAGACCGCCTTTTTTCTCGTTGTAATCCCAATTTTGGTAGTTATTTTTTGTGTTGTCAAGTTGTAGAAACTGAGATCTTGTTTGCTGAAAGGTATAGTCATCAATCACTTGACTATTGATGCATCTGTGCTCTGAAAACTGTTTCAATGAGCTCTGCTTTCAATTTTCATCCCCTAAATCAACAGGAAATTCGAAAAACACAGCGTGATAACGAGACGTTTGATCATGTTCAAGCAGGGAATTGTAGTCGAGATAGAATAGTTATGAGTAACAGCCTTCACTCGATATTTATATTAAGTCAATAAATGCATGACATGTATTTTCTCCGTTCGTCACAAAACAAGAACATACTCATTTAAAATTGCTGGATGAGAATACAAATACTAAAAATGAAAAAAAG</genome_strand>
        <mrna_strand>CACATTAGACCGCCTTTTTTCTCGTTGTAATCCCAATTTTGGTAGTTATTTTTTGTGTTGTCAAGTTGTAGAAACTGAGATCTTGTTTGCTGAAAGGTATAGTCATCAATCACTTGACTATTGATGCATCTGTGCTCTGAAAAAA.........................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329468" ref_strand="+" ref_description="SGN-U329468        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | GCN5-related N-acetyltransferase, putative, similar to SP:Q03503 L-A virus GAG protein N-acetyltransferase (EC 2.3.1.-) {Saccharomyces cerevisiae}; contains Pfam profile PF00583: acetyltransferase, GNAT family | chr2:15985590-15987793 REVERSE | Aliases: None(evalue: 6e-77, score=284) genbank/nr: gi|76573299|gb|ABA46754.1| unknown [Solanum tuberosum] (evalue: 3e-109, score=391)">
      <seq>ggcgattggcggccaatcggccgaattgatacttttcgccattgaattaaggcacaccacacgaggtccttattttggatcgccaccaggtgcatcgctgactcatggagacaaggagtgaaaatgaaccagaagtagacatcaaggcaccagaaataaaatatgttagctatgggggtgaacatcatctacctcttatcatgaaccttgttgacgaagagctcagcgagccctactctatcttcacttaccgctactttgtctatctttggccacaactgtcttttatggccttccataaggggaaatgtgtagggacggtggtctgcaagatgggagagcatcgtggtacattcagaggttacattgcgatgcttgtggtgcttaagccttacagaggcaaaggaatcgctacagaacttgtcacgagatcaatcaaggtgatgatggaatctggttgtgaagaggtgactttggaagctgaagtaacaaataaaggagcactcgctttgtatggtcgtcttggatttattagagcaaagagactttttcgttattatttgaatggtgtagatgctttccggctcaagctattatttcctcgcgtagaaccacagcccttaaattccatggcagatgctggtgatgagagcctcgagtataaagagcacacacattgtggagaacaatcccccttgttgccaacacaacatgtaaactgaatattctggactcttcaaaaatgtcgacaggtatgtgttgtgcactccaaaagcatttgggagaatccaacatgggtacgacaacacttttggagagtccaaatgccaaagagaccacattagaccgccttttttctcgttgtaatcccaattttggtagttatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="115400" stop="110533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115202" g_stop="115180" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="51" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115179" i_stop="113758" i_length="1422">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.281" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113757" g_stop="113519" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="290" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113518" i_stop="113434" i_length="85">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113433" g_stop="113313" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="411" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113312" i_stop="112299" i_length="1014">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112298" g_stop="112243" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="467" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112242" i_stop="111257" i_length="986">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111256" g_stop="110833" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="891" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U329468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115202" e_stop="115180"/>
          <exon e_start="113757" e_stop="113519"/>
          <exon e_start="113433" e_stop="113313"/>
          <exon e_start="112298" e_stop="112243"/>
          <exon e_start="111256" e_stop="110833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTTTCGCCATTGAATTAAGGTATGCACCTTTTCTCTCCTGCTGAACCCCACCCCCACCCTCCTTTTGGGGGTTCTTGAATGGTTTTTTTCTTGTTTCTTTGAATTGAGTTGTAGATTGTATAAAGATTGGATTTTTAATTTTGTTATTTGGGTTTTTTTTTTTTTGGTAAAGAATGAATCTTTATTGGATTTTTGAACTTGGGTGTTGTTTGGTAGCAAGATTAGAGTGTTTATTTTGATGTATTGAATTTAGAGATGAATGAAGCCATATTGTATTGTGTGTTTTATTGGTACTTGAATTTTGGTATGTTTGCTTTTCACCCTTTGTGGTAGTGGTTGGGAAAAAAAAATGTAACTTTGTAGGTATCCTGTGGAATCAGTCGAGTTGTGAGCTAGCTTTTGTGATTAAGCTAACCAATTTTGTTATCTTGTGTATTTTTTTAAAAATCTGTTTAGGTAGCATGATTGGGATGGAGTTAACATTGAGATTTGAGAAATAGAATAGATTAGATTACTCAGAAGTATATTTAAAGAAGGGTAAGTGCCTAAGTTTCGTCTGTCTCCAAAGGGGAGGTTGAGTGATTGATACATAGGAGAAACAACCTAAATATCCCAAGCTTGTATTACAGCTAAGGCAATTAGTGTGAGCCCATTTATTTCAATCTCGGTGGCAGATTATGAATTTGTCAAAGTGTGCGCAAGCTTATCCTATTGCATAAAACAAAAAGTCCTTTTTTGTTCATAAGACCGTCATTATGTTGGATATCAGTGAATATGTTCATTAAGTGACTTAAGAAGACACATGAAATGTGTGTGCATATATTGTATGCTATGATCGTGTGCTTGTTTGTTCCCATGTTCAAAAGAGAGAGTTAAAGAGATAGAGGAGGACCATGAAGGGGTATTCAACTAAGAAATGCTACTAATTTATAGTGCATCGGGTTTCTAAAAAAAAATTAAGGTTTGGGGTACTTCAAATTCTCGTTGTTGAGCAATTTTTAGATAATAAAAAAAGCTCCTTATTATGATTGCTTAAGGTGGACTCAGATTTTATAATTGGATGACAAGAAAATTGATGTTTGTTTTTCTGACTTCTCAAAATGGAAAGAGAAAAGGCTGATTTTTGTCAACTTACTGAGAATATGTCATCATGCAGCATAATACCTCGTAGACTTGAGATTTTATAGTTTCATTTGTTTATGTCAATATAGATAGGCCGTTTTTTGTTTATCCTACAAATCTCTTAAGATTCATCAGCCTTGATAGTTAACATATACAACATAAATACGGATCTTCTAACTTCCAATGGTTTTAATGCTGTGTGAAAGTTTAGTTTGTGTTTAGGCTAATCAACAATCTTTAAAAAGAAAAGTTGATATTCATCATGTCAGTCCCTCTGAATCCCCCTGCCCGTCCTGCCTATCTTTCTCTGATCTCACAGGCACACCACACGAGGTCCTTATTTTGGATCGCCACCAGGTGCATCGCTGACTCATGGAGACAAGGAGTGAAAATGAACCAGAAGTAGACATCAAGGCACCAGAAATAAAATATGTTAGCTATGGGGGTGAACATCATCTACCTCTTATCATGAACCTTGTTGACGAAGAGCTCAGCGAGCCCTACTCTATCTTCACTTACCGCTACTTTGTCTATCTTTGGCCACAACTGTCTTTTATGGTACTACTCCGACTTCTTTGTCATATTAGTTATGTTATATTTCATCAGGAGCATAAATCTTTCTTCATTACTGAGATATTTGCAGGCCTTCCATAAGGGGAAATGTGTAGGGACGGTGGTCTGCAAGATGGGAGAGCATCGTGGTACATTCAGAGGTTACATTGCGATGCTTGTGGTGCTTAAGCCTTACAGAGGCAAAGGAATCGGTCAGTGTCTTATCGCTCTTTGCTTGATAAATTGATAATGGCCTTTAATATATATTGGTCCACTGATGTCTATAGAGTGACACTCTCTTCATGTACCTGGATAAGCATATTGTTTTTCCCTGAGGAATTTCTCAATTCCGGGTCTCTGTAATGAAGCAGGTTGGTTTTGTGTTTGATTGAATTAACATTAATCTGATTTATATTTCGGTTGAAGCATCTTGTGTTGCTGAATGAGTCTGAGATTTCTCCCATGGTACGAAACTAAAAGTACAGTTTTTTTTTATAATTGTGGTGTAAGCACCTCAACTAACTCCACGAGATAGTGCCACCTCCCACCACCAACAGGCTCTTATTTTTCTGATCCTTCATTTAGTTTTCTTTGAAAAAGGTATTTCTTGCTAAAAAGAACTTCCCACTCATAGTTATCACAATGACAATTGTATCTCTTTTCCCTATTTTTTGTTTCCTCTTTCCATCAAAATCTCCTCACCTGTTACTCCCCAAAGCACAAGAAACCTCCCTATTTCGTTGCTGTCTCCTCTGCTTGAGGTACACTGTACACTCTTTGAATTCTCTTTTACACATTGAAGTCTAATTCAACAGCCATAAGCAACCTGACCCCATATTGAAAAAGTTTTTCTTACTGTGGAACTAGATGTGGTTGTGAGGTTATGAAGATTAAAAATGAGTTTTGGTTGTTAGTTTGCCTTTGCTTGATGTGGTGTGGCTGCTGAAGGTCACCGTACACAACCCTTCCCAGACCCACCTGTCGGATTTACACCTGTAGTTGGTGGTATGGCTACTGAATCTGAAAGAAAGGGGAAAAAAAAGTATATGCATGCATGCCTAGCACTAAGTACAATATATGAAAGAGATATTAGAGTAAAATAAACAAAACGAAGCTCCGGGTGGTAATCCTGGTTCAGCTGGTTTTCTGGGTATTTTCACTGATTAAGTGTTTTCTACTATATGACTTTACAGATGCATATTAACTTTTGATATTTCATCTTCCAGCTACAGAACTTGTCACGAGATCAATCAAGGTGATGATGGAATCTGGTTGTGAAGAGGTATGGCACAAAATTCTGAAACATTCATATTAGCGACTTTAAGACTGCCGATGTGAGAAACATAAATATAATGGCCACGGTATCAAAAATGTTAACTGTCCATTTTGGTTGTACAAGCTCAAGTAGGCCATTCTTTGTGACTTACTGCACGTCATCAGAGTATGCACATTGGCCTGATAATTTTGTCCATCTTGCAGATCAAGCAGAACTATGTGTTTAGTGCATTTTTGCTGTTCGAACTAAGACTGCCCTTTTTAAGATTTTCTATGCTTTTTCACATGTTGTTTTCTTCCAAACCACCCTCCACCTTCTTCCAGCTATAAAATTCTGTTTTCTTACAGGAACCATGAAGAACAATATATCCAAAACGAAAACGTCACAGATTTGTTGAATAAGGAATTTTGTTTGCTTAGGTTTGTTAGAAGTTTGAAATATGATAACACGGAACAAAAAGAGATGGATCAAAAACATTCCTTTGTGTTTAACAGTCATCATAAATTTATAACCATAAGGTTCTTTATTTAGCCTTTAATAAGAAATGACTTAATAAGGCTTGAGATCAAATCCCGCAGAGACAAAAAGACGATGATTTTTTTCCCTAGTCTTAAGTCATGGTGGCGGAGTTATTTGATTCCTATGTTAGTGGGAGGCAGCAAGTACCCGGTGAGATAGTCAAGATACGCGCAGGTTGGCCCAAATACCATCATTATAATTAAAAAAGAAAGAAAACATAAATGATTTAATGATGAAAACCACCTCGATAAGATTAGATACTTCATGATTATCGATCTTGCCTGCTGTTTTCTACAAATCAAGAGCTGAAATGTGTTGTGTGCTTACTTGGTTTATGTAGCCTATTTTTTATTTTGGGGATAGCTAAGTTTGTCATGTTTAAATATAGAATCGAACTGACAAAGCACCATAGCGTCATGATATATTATCTTGCCATGGCTTGTTTCCACTTAATTTGTTCCTATGTTCTGTAGGTGACTTTGGAAGCTGAAGTAACAAATAAAGGAGCACTCGCTTTGTATGGTCGTCTTGGATTTATTAGAGCAAAGAGACTTTTTCGTTATTATTTGAATGGTGTAGATGCTTTCCGGCTCAAGCTATTATTTCCTCGCGTAGAACCACAGCCCTTAAATTCCATGGCAGATGCTGGTGATGAGAGCCTCGAGTATAAAGAGCACACACATTGTGGAGAACAATCCCCCTTGTTGCCAACACAACATGTAAACTGAATATTCTGGACTCTTCAAAAATGTCGACAGGTATGTGTTGTGCACTCCAAAAGCATTTGGGAGAATCCAACATGGGTACGACAACACTTTTGGAGAGTCCAAATGCCAAAGAGACCACATTAGACCGCCTTTTTTCTCGTTGTAATCCCAATTTTGGTAGTTATTTTTT</genome_strand>
        <mrna_strand>ATACTTTTCGCCATTGAATTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACCACACGAGGTCCTTATTTTGGATCGCCACCAGGTGCATCGCTGACTCATGGAGACAAGGAGTGAAAATGAACCAGAAGTAGACATCAAGGCACCAGAAATAAAATATGTTAGCTATGGGGGTGAACATCATCTACCTCTTATCATGAACCTTGTTGACGAAGAGCTCAGCGAGCCCTACTCTATCTTCACTTACCGCTACTTTGTCTATCTTTGGCCACAACTGTCTTTTATG.....................................................................................GCCTTCCATAAGGGGAAATGTGTAGGGACGGTGGTCTGCAAGATGGGAGAGCATCGTGGTACATTCAGAGGTTACATTGCGATGCTTGTGGTGCTTAAGCCTTACAGAGGCAAAGGAATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGAACTTGTCACGAGATCAATCAAGGTGATGATGGAATCTGGTTGTGAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTTGGAAGCTGAAGTAACAAATAAAGGAGCACTCGCTTTGTATGGTCGTCTTGGATTTATTAGAGCAAAGAGACTTTTTCGTTATTATTTGAATGGTGTAGATGCTTTCCGGCTCAAGCTATTATTTCCTCGCGTAGAACCACAGCCCTTAAATTCCATGGCAGATGCTGGTGATGAGAGCCTCGAGTATAAAGAGCACACACATTGTGGAGAACAATCCCCCTTGTTGCCAACACAACATGTAAACTGAATATTCTGGACTCTTCAAAAATGTCGACAGGTATGTGTTGTGCACTCCAAAAGCATTTGGGAGAATCCAACATGGGTACGACAACACTTTTGGAGAGTCCAAATGCCAAAGAGACCACATTAGACCGCCTTTTTTCTCGTTGTAATCCCAATTTTGGTAGTTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339375" ref_strand="-" ref_description="SGN-U339375        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | GCN5-related N-acetyltransferase, putative, similar to SP:Q03503 L-A virus GAG protein N-acetyltransferase (EC 2.3.1.-) {Saccharomyces cerevisiae}; contains Pfam profile PF00583: acetyltransferase, GNAT family | chr2:15985590-15987793 REVERSE | Aliases: None(evalue: 1e-52, score=203) genbank/nr: gi|76573299|gb|ABA46754.1| unknown [Solanum tuberosum] (evalue: 5e-65, score=250)">
      <seq>gaaataaaatatgttagctatgggggtgaacatcatctacctcttatcatgaaccttgttgacgaagagctcagcgagccctactctatcttcacttaccgctactttgtctatctttggccacaactgtcttttatggccttccataaggggaaatgtgtagggacggtggtctgcaagatgggagagcatcgtggtacattcagaggttacattgcgatgcttgtggtgcttaagccttacagaggcaaaggaatcgctacagaacttgtcacgagatcaatcaaggtgatgatggaatctggttgtgaagaggtatggcacaaaattctgaaacattcatattagcgactttaagactgccgatgtgagaaacataaatataatggccacggtatcaaaaatgttaactgtccattttggttgtacaagctcaagtaggccattctttgtgacttactgcacgtcatcagagtatgcacattggcctgataattttgtccatcttgcagatcaagcagaactatgtgtttagtgcatttttgctgttcgaactaagactgccctttttaagattttctatgctttttcacatgttgttttcttccaaaccaccctccaccttcttccagctataaaattctgttttcttcaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="113956" stop="93193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113656" g_stop="113519" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113518" i_stop="113434" i_length="85">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113433" g_stop="113313" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="259" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113312" i_stop="112299" i_length="1014">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112298" g_stop="111853" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="705" r_length="446" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U339375" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339375" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113656" e_stop="113519"/>
          <exon e_start="113433" e_stop="113313"/>
          <exon e_start="112298" e_stop="111853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAAAATATGTTAGCTATGGGGGTGAACATCATCTACCTCTTATCATGAACCTTGTTGACGAAGAGCTCAGCGAGCCCTACTCTATCTTCACTTACCGCTACTTTGTCTATCTTTGGCCACAACTGTCTTTTATGGTACTACTCCGACTTCTTTGTCATATTAGTTATGTTATATTTCATCAGGAGCATAAATCTTTCTTCATTACTGAGATATTTGCAGGCCTTCCATAAGGGGAAATGTGTAGGGACGGTGGTCTGCAAGATGGGAGAGCATCGTGGTACATTCAGAGGTTACATTGCGATGCTTGTGGTGCTTAAGCCTTACAGAGGCAAAGGAATCGGTCAGTGTCTTATCGCTCTTTGCTTGATAAATTGATAATGGCCTTTAATATATATTGGTCCACTGATGTCTATAGAGTGACACTCTCTTCATGTACCTGGATAAGCATATTGTTTTTCCCTGAGGAATTTCTCAATTCCGGGTCTCTGTAATGAAGCAGGTTGGTTTTGTGTTTGATTGAATTAACATTAATCTGATTTATATTTCGGTTGAAGCATCTTGTGTTGCTGAATGAGTCTGAGATTTCTCCCATGGTACGAAACTAAAAGTACAGTTTTTTTTTATAATTGTGGTGTAAGCACCTCAACTAACTCCACGAGATAGTGCCACCTCCCACCACCAACAGGCTCTTATTTTTCTGATCCTTCATTTAGTTTTCTTTGAAAAAGGTATTTCTTGCTAAAAAGAACTTCCCACTCATAGTTATCACAATGACAATTGTATCTCTTTTCCCTATTTTTTGTTTCCTCTTTCCATCAAAATCTCCTCACCTGTTACTCCCCAAAGCACAAGAAACCTCCCTATTTCGTTGCTGTCTCCTCTGCTTGAGGTACACTGTACACTCTTTGAATTCTCTTTTACACATTGAAGTCTAATTCAACAGCCATAAGCAACCTGACCCCATATTGAAAAAGTTTTTCTTACTGTGGAACTAGATGTGGTTGTGAGGTTATGAAGATTAAAAATGAGTTTTGGTTGTTAGTTTGCCTTTGCTTGATGTGGTGTGGCTGCTGAAGGTCACCGTACACAACCCTTCCCAGACCCACCTGTCGGATTTACACCTGTAGTTGGTGGTATGGCTACTGAATCTGAAAGAAAGGGGAAAAAAAAGTATATGCATGCATGCCTAGCACTAAGTACAATATATGAAAGAGATATTAGAGTAAAATAAACAAAACGAAGCTCCGGGTGGTAATCCTGGTTCAGCTGGTTTTCTGGGTATTTTCACTGATTAAGTGTTTTCTACTATATGACTTTACAGATGCATATTAACTTTTGATATTTCATCTTCCAGCTACAGAACTTGTCACGAGATCAATCAAGGTGATGATGGAATCTGGTTGTGAAGAGGTATGGCACAAAATTCTGAAACATTCATATTAGCGACTTTAAGACTGCCGATGTGAGAAACATAAATATAATGGCCACGGTATCAAAAATGTTAACTGTCCATTTTGGTTGTACAAGCTCAAGTAGGCCATTCTTTGTGACTTACTGCACGTCATCAGAGTATGCACATTGGCCTGATAATTTTGTCCATCTTGCAGATCAAGCAGAACTATGTGTTTAGTGCATTTTTGCTGTTCGAACTAAGACTGCCCTTTTTAAGATTTTCTATGCTTTTTCACATGTTGTTTTCTTCCAAACCACCCTCCACCTTCTTCCAGCTATAAAATTCTGTTTTCTTACAGGAACCATGAAGAACAATATATCCAAAACGAAAACGTCACAGATTTGTTG</genome_strand>
        <mrna_strand>GAAATAAAATATGTTAGCTATGGGGGTGAACATCATCTACCTCTTATCATGAACCTTGTTGACGAAGAGCTCAGCGAGCCCTACTCTATCTTCACTTACCGCTACTTTGTCTATCTTTGGCCACAACTGTCTTTTATG.....................................................................................GCCTTCCATAAGGGGAAATGTGTAGGGACGGTGGTCTGCAAGATGGGAGAGCATCGTGGTACATTCAGAGGTTACATTGCGATGCTTGTGGTGCTTAAGCCTTACAGAGGCAAAGGAATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGAACTTGTCACGAGATCAATCAAGGTGATGATGGAATCTGGTTGTGAAGAGGTATGGCACAAAATTCTGAAACATTCATATTAGCGACTTTAAGACTGCCGATGTGAGAAACATAAATATAATGGCCACGGTATCAAAAATGTTAACTGTCCATTTTGGTTGTACAAGCTCAAGTAGGCCATTCTTTGTGACTTACTGCACGTCATCAGAGTATGCACATTGGCCTGATAATTTTGTCCATCTTGCAGATCAAGCAGAACTATGTGTTTAGTGCATTTTTGCTGTTCGAACTAAGACTGCCCTTTTTAAGATTTTCTATGCTTTTTCACATGTTGTTTTCTTCCAAACCACCCTCCACCTTCTTCCAGCTATAAAATTCTGTTTTCTTCAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332577" ref_strand="+" ref_description="SGN-U332577        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tgaaccccacccccaccctccttttgggggttcttgaatggtttttttcttgtttctttgaattgagttgtagattgtataaagattggatttttaattttgttatttgggtttttttttttttggtaaagaatgaatctttattggatttttgaacttgggtgttgtttggtagcaagattagagtgtttattttgatgtattgaatttagagatgaatgaagccatattgtattgtgtgttttattggtacttgaattttggtatgtttgcttttcaccctttgtggtagtggttgggaaaaaaaaatgtaactttgtaggtatcctgtggaatcagtcgagttgtgagctagcttttgtgattaagctaaccaattttgttatcttgtgtatttttttaaaaatctgtttaggtagcatgattgggatggagttaacattgagatttgagaaatagaatagattagattactcagaagtatatttaaagaagggtaagtgcctaagtttcgtctgtctccaaaggggaggttgagtgattgatacataggagaaacaacctaaatatcccaagcttgtattacagctaaggcaattagtgtgagcccatttatttcaatctcggtggcagattatgaaattgtcaaagtgtgcgcaagcttatcctattgcataaaacaaaaagtccttttttgttcataagaccgtcattatgttggatatcagtgaatatgttcattaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0099J09-3PINa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09SLm0099J09.1" temp_strand="-" temp_description="C09SLm0099J09.1  AC234223.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0099J09 upload_account_name:spain (1 - 115400)">
        <position start="115400" stop="114110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115157" g_stop="114410" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0099J09.1" gen_strand="-" ref_id="SGN-U332577" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0099J09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115157" e_stop="114410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCCCACCCCCACCCTCCTTTTGGGGGTTCTTGAATGGTTTTTTTCTTGTTTCTTTGAATTGAGTTGTAGATTGTATAAAGATTGGATTTTTAATTTTGTTATTTGGGTTTTTTTTTTTTTGGTAAAGAATGAATCTTTATTGGATTTTTGAACTTGGGTGTTGTTTGGTAGCAAGATTAGAGTGTTTATTTTGATGTATTGAATTTAGAGATGAATGAAGCCATATTGTATTGTGTGTTTTATTGGTACTTGAATTTTGGTATGTTTGCTTTTCACCCTTTGTGGTAGTGGTTGGGAAAAAAAAATGTAACTTTGTAGGTATCCTGTGGAATCAGTCGAGTTGTGAGCTAGCTTTTGTGATTAAGCTAACCAATTTTGTTATCTTGTGTATTTTTTTAAAAATCTGTTTAGGTAGCATGATTGGGATGGAGTTAACATTGAGATTTGAGAAATAGAATAGATTAGATTACTCAGAAGTATATTTAAAGAAGGGTAAGTGCCTAAGTTTCGTCTGTCTCCAAAGGGGAGGTTGAGTGATTGATACATAGGAGAAACAACCTAAATATCCCAAGCTTGTATTACAGCTAAGGCAATTAGTGTGAGCCCATTTATTTCAATCTCGGTGGCAGATTATGAATTTGTCAAAGTGTGCGCAAGCTTATCCTATTGCATAAAACAAAAAGTCCTTTTTTGTTCATAAGACCGTCATTATGTTGGATATCAGTGAATATGTTCATTAAGTGA</genome_strand>
        <mrna_strand>TGAACCCCACCCCCACCCTCCTTTTGGGGGTTCTTGAATGGTTTTTTTCTTGTTTCTTTGAATTGAGTTGTAGATTGTATAAAGATTGGATTTTTAATTTTGTTATTTGGGTTTTTTTTTTTTTGGTAAAGAATGAATCTTTATTGGATTTTTGAACTTGGGTGTTGTTTGGTAGCAAGATTAGAGTGTTTATTTTGATGTATTGAATTTAGAGATGAATGAAGCCATATTGTATTGTGTGTTTTATTGGTACTTGAATTTTGGTATGTTTGCTTTTCACCCTTTGTGGTAGTGGTTGGGAAAAAAAAATGTAACTTTGTAGGTATCCTGTGGAATCAGTCGAGTTGTGAGCTAGCTTTTGTGATTAAGCTAACCAATTTTGTTATCTTGTGTATTTTTTTAAAAATCTGTTTAGGTAGCATGATTGGGATGGAGTTAACATTGAGATTTGAGAAATAGAATAGATTAGATTACTCAGAAGTATATTTAAAGAAGGGTAAGTGCCTAAGTTTCGTCTGTCTCCAAAGGGGAGGTTGAGTGATTGATACATAGGAGAAACAACCTAAATATCCCAAGCTTGTATTACAGCTAAGGCAATTAGTGTGAGCCCATTTATTTCAATCTCGGTGGCAGATTATGAAATTGTCAAAGTGTGCGCAAGCTTATCCTATTGCATAAAACAAAAAGTCCTTTTTTGTTCATAAGACCGTCATTATGTTGGATATCAGTGAATATGTTCATTAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2760" PGL_stop="10773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2760" e_stop="2921"/>
            <exon e_start="5181" e_stop="5436"/>
            <exon e_start="6838" e_stop="7618"/>
            <exon e_start="8339" e_stop="8388"/>
            <exon e_start="9912" e_stop="9947"/>
            <exon e_start="10467" e_stop="10481"/>
            <exon e_start="10759" e_stop="10773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.000" e_score="0.975"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.449" e_score="0.999"/>
          <exon-intron don_prob="0.000" acc_prob="0.938" e_score="0.540"/>
          <exon-intron don_prob="0.942" acc_prob="0.000" e_score="0.528"/>
          <exon-intron don_prob="0.971" acc_prob="0.867" e_score="0.467"/>
          <exon-only e_score="0.400"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="2760" e_stop="2921" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2922" i_stop="5180" i_length="2259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5181" e_stop="5436" e_length="256"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5437" i_stop="6837" i_length="1401"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="6838" e_stop="7618" e_length="781"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.449">
            <gDNA_intron_boundary i_start="7619" i_stop="8338" i_length="720"/>
          </intron>
          <exon e_serial="4" e_score="0.540">
            <gDNA_exon_boundary e_start="8339" e_stop="8388" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.938">
            <gDNA_intron_boundary i_start="8389" i_stop="9911" i_length="1523"/>
          </intron>
          <exon e_serial="5" e_score="0.528">
            <gDNA_exon_boundary e_start="9912" e_stop="9947" e_length="36"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9948" i_stop="10466" i_length="519"/>
          </intron>
          <exon e_serial="6" e_score="0.467">
            <gDNA_exon_boundary e_start="10467" e_stop="10481" e_length="15"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.867">
            <gDNA_intron_boundary i_start="10482" i_stop="10758" i_length="277"/>
          </intron>
          <exon e_serial="7" e_score="0.400">
            <gDNA_exon_boundary e_start="10759" e_stop="10773" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2760" stop="2921"/>
              <exon start="5181" stop="5436"/>
              <exon start="6838" stop="7618"/>
              <exon start="8339" stop="8388"/>
              <exon start="9912" stop="9947"/>
              <exon start="10467" stop="10481"/>
              <exon start="10759" stop="10773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAAAGCGAGAGAGAGAGGAGAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAG : ATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGAT : GCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCATTCTTGATGTATTGCCGTGCTCAGCAACGTGAATGGAATCCCAAAATCAAGCACTTGTTCGGTTTTTTCCCCTATGTGAAGATTGAGAAACCGAAAACCCAGTAGCAGAAGTCGCTTCTCTTTCGAGCTTAGCCTGTAATACCCCAAACATGTGCAGGATATGGCTTTGGTGAGCACAAAGCAAGCACTCAGCAATTTTTTTTCTCTTTTCCCATTTTGCAGAATGTATTGTAAATGAAAGTCTGGAATAGTTTCGACTCTCGACCGAATATTGGTTAATTTTTGACTGTACAATTAGTGGTTTTCCAGTGTACCATATTTTACACTCCCACAGAAGATGACATGGATTAACTAGTTGAATTCTTTTTTCTG : GACAGATAAATTGAAACGAGATAGAAAATCGAAATAATTATTCAAATAGA : GAAAAAATATATCAAAAAAGCATAACGAGCATTGGG : TGCCATTCCCTTGCG : TCATGGCATGAGGAG</gDNA_template>
            <first_frame> E  E  S  E  R  E  R  R  E  K  A  R  E  R  R  E  R  S  C  V  C  L  Y  M  Y  M  H  T  H  I  Y  I  Q  R  S  K  S  V  G  I  F  F  G  V  E  F  G  N  W  I  *  R  *  K  :  I  A  E  W  K  M  A  Y  S  F  G  A  L  *  H  L  K  S  G  V  S  Q  I  M  C  S  H  P  I  L  Q  N  S  S  T  P  F  Q  I  S  H  A  F  S  W  L  L  L  V  L  S  T  P  L  D  N  G  L  R  K  G  S  V  S  F  I  C  Q  T  *  Y  L  P  W  G  V  *  H  I  M  P  L  C  G  R   : C  N  S  K  V  M  R  H  Q  W  S  G  R  C  F  C  I  S  I  S  S  I  H  Q  I  G  I  I  G  V  R  C  P  P  F  C  S  F  M  V  R  S  L  P  L  C  I  H  S  F  A  L  A  L  V  S  K  Y  T  T  H  F  C  A  F  F  A  L  L  V  H  I  S  I  T  F  I  Q  K  T  H  W  L  S  A  S  Q  S  Y  T  W  Q  L  C  W  S  E  L  L  A  G  Y  V  I  D  Y  S  A  S  R  F  R  A  G  T  L  I  H  R  A  M  Q  S  G  T  S  *  W  A  S  T  R  T  L  Q  M  H  S  *  C  I  A  V  L  S  N  V  N  G  I  P  K  S  S  T  C  S  V  F  S  P  M  *  R  L  R  N  R  K  P  S  S  R  S  R  F  S  F  E  L  S  L  *  Y  P  K  H  V  Q  D  M  A  L  V  S  T  K  Q  A  L  S  N  F  F  S  L  F  P  F  C  R  M  Y  C  K  *  K  S  G  I  V  S  T  L  D  R  I  L  V  N  F  *  L  Y  N  *  W  F  S  S  V  P  Y  F  T  L  P  Q  K  M  T  W  I  N  *  L  N  S  F  F  W :   T  D  K  L  K  R  D  R  K  S  K  *  L  F  K  *   : R  K  N  I  S  K  K  H  N  E  H  W   : V  P  F  P  C   : V  M  A  *  G  </first_frame>
            <second_frame>  K  K  A  R  E  R  G  E  R  K  R  E  R  G  E  R  D  L  V  C  V  Y  I  C  I  C  T  H  I  Y  I  F  K  E  A  N  L  W  E  Y  F  L  G  W  N  L  E  I  G  S  D  V  E  R :   L  Q  N  G  R  W  H  I  L  L  G  P  C  N  I  *  R  V  V  *  A  K  L  C  A  V  I  L  Y  C  R  I  L  Q  H  H  F  K  Y  P  M  H  S  L  G  S  Y  W  S  C  Q  R  P  *  T  T  V  *  E  K  V  Q  C  P  S  Y  V  K  H  N  T  C  L  G  E  Y  D  I  S  C  H  F  A  A  D  :  A  T  A  R  *  *  D  T  N  G  L  G  D  A  S  V  Y  L  Y  P  L  F  T  R  L  A  L  S  E  Y  D  A  H  L  S  V  P  L  W  C  A  L  C  H  C  A  F  T  A  S  L  W  H  W  F  Q  S  T  L  R  T  F  V  P  S  L  R  S  S  C  I  *  V  L  H  S  Y  R  R  H  I  G  *  A  P  R  K  V  I  R  G  N  F  V  G  R  S  C  L  L  A  M  *  S  I  I  L  Q  A  D  S  G  L  V  H  *  S  T  G  P  C  S  L  A  R  L  N  G  L  Q  L  V  L  C  K  C  I  L  D  V  L  P  C  S  A  T  *  M  E  S  Q  N  Q  A  L  V  R  F  F  P  L  C  E  D  *  E  T  E  N  P  V  A  E  V  A  S  L  S  S  L  A  C  N  T  P  N  M  C  R  I  W  L  W  *  A  Q  S  K  H  S  A  I  F  F  L  F  S  H  F  A  E  C  I  V  N  E  S  L  E  *  F  R  L  S  T  E  Y  W  L  I  F  D  C  T  I  S  G  F  P  V  Y  H  I  L  H  S  H  R  R  *  H  G  L  T  S  *  I  L  F  S   : G  Q  I  N  *  N  E  I  E  N  R  N  N  Y  S  N  R  :  E  K  I  Y  Q  K  S  I  T  S  I  G  :  C  H  S  L  A  :  S  W  H  E  E </second_frame>
            <third_frame>   R  K  R  E  R  E  E  R  E  S  E  R  E  E  R  E  I  L  C  V  F  I  Y  V  Y  A  H  T  Y  I  Y  S  K  K  Q  I  C  G  N  I  F  W  G  G  I  W  K  L  D  L  T  L  K   : D  C  R  M  E  D  G  I  F  F  W  G  P  V  T  S  K  E  W  C  E  P  N  Y  V  Q  S  S  Y  I  A  E  F  F  N  T  I  S  N  I  P  C  I  L  L  A  L  I  G  L  V  N  A  L  R  Q  R  F  E  K  R  F  S  V  L  H  M  S  N  I  I  L  A  L  G  S  M  T  Y  H  A  T  L  R  Q  M :   Q  Q  Q  G  D  E  T  P  M  V  W  E  M  L  L  Y  I  Y  I  L  Y  S  P  D  W  H  Y  R  S  T  M  P  T  F  L  F  L  Y  G  A  L  F  A  I  V  H  S  Q  L  R  F  G  I  G  F  K  V  H  Y  A  L  L  C  L  L  C  A  P  R  A  Y  K  Y  Y  I  H  T  E  D  T  L  A  K  R  L  A  K  L  Y  V  A  T  L  L  V  G  A  A  C  W  L  C  D  R  L  F  C  K  Q  I  Q  G  W  Y  I  N  P  Q  G  H  A  V  W  H  V  L  M  G  F  N  S  Y  F  A  N  A  F  L  M  Y  C  R  A  Q  Q  R  E  W  N  P  K  I  K  H  L  F  G  F  F  P  Y  V  K  I  E  K  P  K  T  Q  *  Q  K  S  L  L  F  R  A  *  P  V  I  P  Q  T  C  A  G  Y  G  F  G  E  H  K  A  S  T  Q  Q  F  F  F  S  F  P  I  L  Q  N  V  L  *  M  K  V  W  N  S  F  D  S  R  P  N  I  G  *  F  L  T  V  Q  L  V  V  F  Q  C  T  I  F  Y  T  P  T  E  D  D  M  D  *  L  V  E  F  F  F  L  :  D  R  *  I  E  T  R  *  K  I  E  I  I  I  Q  I  E :   K  K  Y  I  K  K  A  *  R  A  L  G :   A  I  P  L  R :   H  G  M  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2762" stop="2921"/>
                    <exon start="5181" stop="5436"/>
                    <exon start="6838" stop="7351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKREREERESEREEREILCVFIYVYAHTYIYSKKQICGNIFWGGIWKLDLTLKDCRMEDGIFFWGPVTSKEWCEPNYVQSSYIAEFFNTISNIPCILLALIGLVNALRQRFEKRFSVLHMSNIILALGSMTYHATLRQMQQQGDETPMVWEMLLYIYILYSPDWHYRSTMPTFLFLYGALFAIVHSQLRFGIGFKVHYALLCLLCAPRAYKYYIHTEDTLAKRLAKLYVATLLVGAACWLCDRLFCKQIQGWYINPQGHAVWHVLMGFNSYFANAFLMYCRAQQREWNPKIKHLFGFFPYVKIEKPKTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9147" PGL_stop="8259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9147" e_stop="8946"/>
            <exon e_start="8808" e_stop="8653"/>
            <exon e_start="8531" e_stop="8361"/>
            <exon e_start="8268" e_stop="8259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.527" e_score="1.000"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9147" e_stop="8946" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8945" i_stop="8809" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8808" e_stop="8653" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8652" i_stop="8532" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8531" e_stop="8361" e_length="171"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.527">
            <gDNA_intron_boundary i_start="8360" i_stop="8269" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.900">
            <gDNA_exon_boundary e_start="8268" e_stop="8259" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9147" stop="8946"/>
              <exon start="8808" stop="8653"/>
              <exon start="8531" stop="8361"/>
              <exon start="8268" stop="8259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325149" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACATACATAAATCAAATTGAATTGAATTAATCACATCTCAAAATGCAGGCAGCTTTGTTTCTTACATCTATTCCCCTAGTAAAACCACCCAAGCCCTTAACAACTTCACCTTTGAGATGTGTTTCAACTCATCTCAAAATTACTCACATTAAAGCAACTCCAATTGACACTTCTACTGTTGACTATAGCTCCATGAACTC : ATCAGTGTTTCCTGCTGAAGCTTGTGAGACAATAGGAGGAGAAACTTGTGATGTTGAAATGTATCCTGAAACCAAACCTAAATCTACACCCTCAAGCAAAACTCTGTCTATGGAGAGTGTAGATAGAGAATATCTTGCCTATAACGAACCAAAAAC : TGTATTCTTATCAGAAGCTTGTGATGATCTTGGAGGAGAATTTTGTGAAGCAAAGTATCAGACTGGAGTTTATTAAGAATAATATTGTTCATATTTATATGTAGATATATAATTAATTAATAACATGTGTTAATTTATGCTACTCTATTTGAATAATTATTTCGATTTTCT : GAAAAAAAAA</gDNA_template>
            <first_frame> V  H  T  *  I  K  L  N  *  I  N  H  I  S  K  C  R  Q  L  C  F  L  H  L  F  P  *  *  N  H  P  S  P  *  Q  L  H  L  *  D  V  F  Q  L  I  S  K  L  L  T  L  K  Q  L  Q  L  T  L  L  L  L  T  I  A  P  *  T   : H  Q  C  F  L  L  K  L  V  R  Q  *  E  E  K  L  V  M  L  K  C  I  L  K  P  N  L  N  L  H  P  Q  A  K  L  C  L  W  R  V  *  I  E  N  I  L  P  I  T  N  Q  K   : L  Y  S  Y  Q  K  L  V  M  I  L  E  E  N  F  V  K  Q  S  I  R  L  E  F  I  K  N  N  I  V  H  I  Y  M  *  I  Y  N  *  L  I  T  C  V  N  L  C  Y  S  I  *  I  I  I  S  I  F   : *  K  K   </first_frame>
            <second_frame>  Y  I  H  K  S  N  *  I  E  L  I  T  S  Q  N  A  G  S  F  V  S  Y  I  Y  S  P  S  K  T  T  Q  A  L  N  N  F  T  F  E  M  C  F  N  S  S  Q  N  Y  S  H  *  S  N  S  N  *  H  F  Y  C  *  L  *  L  H  E  L  :  I  S  V  S  C  *  S  L  *  D  N  R  R  R  N  L  *  C  *  N  V  S  *  N  Q  T  *  I  Y  T  L  K  Q  N  S  V  Y  G  E  C  R  *  R  I  S  C  L  *  R  T  K  N  :  C  I  L  I  R  S  L  *  *  S  W  R  R  I  L  *  S  K  V  S  D  W  S  L  L  R  I  I  L  F  I  F  I  C  R  Y  I  I  N  *  *  H  V  L  I  Y  A  T  L  F  E  *  L  F  R  F  S  :  E  K  K  </second_frame>
            <third_frame>   T  Y  I  N  Q  I  E  L  N  *  S  H  L  K  M  Q  A  A  L  F  L  T  S  I  P  L  V  K  P  P  K  P  L  T  T  S  P  L  R  C  V  S  T  H  L  K  I  T  H  I  K  A  T  P  I  D  T  S  T  V  D  Y  S  S  M  N  S :   S  V  F  P  A  E  A  C  E  T  I  G  G  E  T  C  D  V  E  M  Y  P  E  T  K  P  K  S  T  P  S  S  K  T  L  S  M  E  S  V  D  R  E  Y  L  A  Y  N  E  P  K  T :   V  F  L  S  E  A  C  D  D  L  G  G  E  F  C  E  A  K  Y  Q  T  G  V  Y  *  E  *  Y  C  S  Y  L  Y  V  D  I  *  L  I  N  N  M  C  *  F  M  L  L  Y  L  N  N  Y  F  D  F  L :   K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9115" stop="8946"/>
                    <exon start="8808" stop="8653"/>
                    <exon start="8531" stop="8456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHLKMQAALFLTSIPLVKPPKPLTTSPLRCVSTHLKITHIKATPIDTSTVDYSSMNSSVFPAEACETIGGETCDVEMYPETKPKSTPSSKTLSMESVDREYLAYNEPKTVFLSEACDDLGGEFCEAKYQTGVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11987" PGL_stop="9998"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11987" e_stop="11857"/>
            <exon e_start="11359" e_stop="9998"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11987" e_stop="11857" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.996">
            <gDNA_intron_boundary i_start="11856" i_stop="11360" i_length="497"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="11359" e_stop="9998" e_length="1362"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11987" stop="11857"/>
              <exon start="11359" stop="10755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10792" stop="9998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCCAGTCTGGATTTCAGAACCTGAGATGTCTACAGATTGTTGTTGTTGAAAAGTTGTTCTACAGGAATGTTATAAGAAGTTCCCACATAGCATCGAAGAAACAGTTTGAGTGCAGTTGTCTGCTAGAG : GGAAACATCTTGTATGCCACTCAAGAGTCAGATTCTCACTCAATATTCATGGAGATTTCTCGTTTGTTATCTTCTGGAGCTCCCGACTTGCATTTGGCGAACTTTCTTCATATGATCACAACTATGGCAGAATCAGGTTCCAATGAGGAGCAAACTGAGTTTTTCATTTTGAATAGCCAGAAAATGCCCAAGCTTCCTGAAAGTGAATCTGTTTGGTCTCTCGCAAATGTCCCATTGTCAACAGATAGTGAGACAGGGGTGATGAGTTCTTCCAGAACAATTGATGAGAAAAACCCTGAGAAAATCAAGAAGAGACCGGGTATCAGCTCAAGCTGGCCACCTACTGACTGGAAAACTGCTCCTGGTTTTCATCGATCTAGCGTGTGCATCTCAAAAGGAAAGGCAGACAGTTGCATCCAATCGGAAAATAATACTGTGGGAGAAAGTGTAATGAAAACATGGGCGCTGACTGCAACTGGGATGACGTGTGTTGAAAATATGGACAACTATCCAGAATCAGCTGCAGTTGTTCTAGGTTCACAAGGTGTTGATCATGTACCTGGTACCATGATGGAAGCATTTGATTCTCCTCATGCCATGACTGAACCACATAACCCGAGTAATAGTTCTTCTGATGTGACTGAAAGAGATCAACTGCATACAGCCACAAATGGCAACAGTGACATTATGATTGAAACTGGCAGACTTGGAGAATATTTTGCTTTCAAATATTTCTTGGAGAAATTCGGTGAGCCTTTTGTGAAATGGGTCAATGAAACCAATGAAACAGGGCTTCCTTATGACCTTGTCGTGGGAGATGATGAATACATAGAGATAAAGACAACTAGATCGTCAACAAAGGATTGGTTCCATATTACCGCAAGGGAATGGCAGTTTGCGGTTGAGAAGGGTGAATCTTTTAGCATTGCCCATGTTTTCTTATCGCCCAATAATACAGGAGTAGTGACAGTATACAAAAATCCATTCAAACTCTATCGACTTGGTAAACTACGGTTAGCTCTCCTAATATCCAAGTCATGAAACTTTATAAGATGTACATAAGGTTGATTGATATACTAGATTCTTCGTTACTTCATACAATCTGGATGAAGTTTTATAGCAGACGATAGAATATGGTACCTGCTGAGTAGCACGTCGTTTTCAAAGTGCTGCGTTTGAGATTCATACCACATATTGACCTTACATTTGTTGGAGAAGCTTGAACTGGATTGCAGTTTTGCCTCCAGATACACCTTTGATTTCAGCTTAGCTACTTCTGTGTATACTGTAAGTCTCATTTTAGCAATGACATCAATTATGTATACAAAGATGTTCATTTTTTTACTTTAATATACCATTTAC</gDNA_template>
            <first_frame> S  A  S  L  D  F  R  T  *  D  V  Y  R  L  L  L  L  K  S  C  S  T  G  M  L  *  E  V  P  T  *  H  R  R  N  S  L  S  A  V  V  C  *  R :   E  T  S  C  M  P  L  K  S  Q  I  L  T  Q  Y  S  W  R  F  L  V  C  Y  L  L  E  L  P  T  C  I  W  R  T  F  F  I  *  S  Q  L  W  Q  N  Q  V  P  M  R  S  K  L  S  F  S  F  *  I  A  R  K  C  P  S  F  L  K  V  N  L  F  G  L  S  Q  M  S  H  C  Q  Q  I  V  R  Q  G  *  *  V  L  P  E  Q  L  M  R  K  T  L  R  K  S  R  R  D  R  V  S  A  Q  A  G  H  L  L  T  G  K  L  L  L  V  F  I  D  L  A  C  A  S  Q  K  E  R  Q  T  V  A  S  N  R  K  I  I  L  W  E  K  V  *  *  K  H  G  R  *  L  Q  L  G  *  R  V  L  K  I  W  T  T  I  Q  N  Q  L  Q  L  F  *  V  H  K  V  L  I  M  Y  L  V  P  *  W  K  H  L  I  L  L  M  P  *  L  N  H  I  T  R  V  I  V  L  L  M  *  L  K  E  I  N  C  I  Q  P  Q  M  A  T  V  T  L  *  L  K  L  A  D  L  E  N  I  L  L  S  N  I  S  W  R  N  S  V  S  L  L  *  N  G  S  M  K  P  M  K  Q  G  F  L  M  T  L  S  W  E  M  M  N  T  *  R  *  R  Q  L  D  R  Q  Q  R  I  G  S  I  L  P  Q  G  N  G  S  L  R  L  R  R  V  N  L  L  A  L  P  M  F  S  Y  R  P  I  I  Q  E  *  *  Q  Y  T  K  I  H  S  N  S  I  D  L  V  N  Y  G  *  L  S  *  Y  P  S  H  E  T  L  *  D  V  H  K  V  D  *  Y  T  R  F  F  V  T  S  Y  N  L  D  E  V  L  *  Q  T  I  E  Y  G  T  C  *  V  A  R  R  F  Q  S  A  A  F  E  I  H  T  T  Y  *  P  Y  I  C  W  R  S  L  N  W  I  A  V  L  P  P  D  T  P  L  I  S  A  *  L  L  L  C  I  L  *  V  S  F  *  Q  *  H  Q  L  C  I  Q  R  C  S  F  F  Y  F  N  I  P  F   </first_frame>
            <second_frame>  Q  P  V  W  I  S  E  P  E  M  S  T  D  C  C  C  *  K  V  V  L  Q  E  C  Y  K  K  F  P  H  S  I  E  E  T  V  *  V  Q  L  S  A  R   : G  K  H  L  V  C  H  S  R  V  R  F  S  L  N  I  H  G  D  F  S  F  V  I  F  W  S  S  R  L  A  F  G  E  L  S  S  Y  D  H  N  Y  G  R  I  R  F  Q  *  G  A  N  *  V  F  H  F  E  *  P  E  N  A  Q  A  S  *  K  *  I  C  L  V  S  R  K  C  P  I  V  N  R  *  *  D  R  G  D  E  F  F  Q  N  N  *  *  E  K  P  *  E  N  Q  E  E  T  G  Y  Q  L  K  L  A  T  Y  *  L  E  N  C  S  W  F  S  S  I  *  R  V  H  L  K  R  K  G  R  Q  L  H  P  I  G  K  *  Y  C  G  R  K  C  N  E  N  M  G  A  D  C  N  W  D  D  V  C  *  K  Y  G  Q  L  S  R  I  S  C  S  C  S  R  F  T  R  C  *  S  C  T  W  Y  H  D  G  S  I  *  F  S  S  C  H  D  *  T  T  *  P  E  *  *  F  F  *  C  D  *  K  R  S  T  A  Y  S  H  K  W  Q  Q  *  H  Y  D  *  N  W  Q  T  W  R  I  F  C  F  Q  I  F  L  G  E  I  R  *  A  F  C  E  M  G  Q  *  N  Q  *  N  R  A  S  L  *  P  C  R  G  R  *  *  I  H  R  D  K  D  N  *  I  V  N  K  G  L  V  P  Y  Y  R  K  G  M  A  V  C  G  *  E  G  *  I  F  *  H  C  P  C  F  L  I  A  Q  *  Y  R  S  S  D  S  I  Q  K  S  I  Q  T  L  S  T  W  *  T  T  V  S  S  P  N  I  Q  V  M  K  L  Y  K  M  Y  I  R  L  I  D  I  L  D  S  S  L  L  H  T  I  W  M  K  F  Y  S  R  R  *  N  M  V  P  A  E  *  H  V  V  F  K  V  L  R  L  R  F  I  P  H  I  D  L  T  F  V  G  E  A  *  T  G  L  Q  F  C  L  Q  I  H  L  *  F  Q  L  S  Y  F  C  V  Y  C  K  S  H  F  S  N  D  I  N  Y  V  Y  K  D  V  H  F  F  T  L  I  Y  H  L  </second_frame>
            <third_frame>   S  Q  S  G  F  Q  N  L  R  C  L  Q  I  V  V  V  E  K  L  F  Y  R  N  V  I  R  S  S  H  I  A  S  K  K  Q  F  E  C  S  C  L  L  E  :  G  N  I  L  Y  A  T  Q  E  S  D  S  H  S  I  F  M  E  I  S  R  L  L  S  S  G  A  P  D  L  H  L  A  N  F  L  H  M  I  T  T  M  A  E  S  G  S  N  E  E  Q  T  E  F  F  I  L  N  S  Q  K  M  P  K  L  P  E  S  E  S  V  W  S  L  A  N  V  P  L  S  T  D  S  E  T  G  V  M  S  S  S  R  T  I  D  E  K  N  P  E  K  I  K  K  R  P  G  I  S  S  S  W  P  P  T  D  W  K  T  A  P  G  F  H  R  S  S  V  C  I  S  K  G  K  A  D  S  C  I  Q  S  E  N  N  T  V  G  E  S  V  M  K  T  W  A  L  T  A  T  G  M  T  C  V  E  N  M  D  N  Y  P  E  S  A  A  V  V  L  G  S  Q  G  V  D  H  V  P  G  T  M  M  E  A  F  D  S  P  H  A  M  T  E  P  H  N  P  S  N  S  S  S  D  V  T  E  R  D  Q  L  H  T  A  T  N  G  N  S  D  I  M  I  E  T  G  R  L  G  E  Y  F  A  F  K  Y  F  L  E  K  F  G  E  P  F  V  K  W  V  N  E  T  N  E  T  G  L  P  Y  D  L  V  V  G  D  D  E  Y  I  E  I  K  T  T  R  S  S  T  K  D  W  F  H  I  T  A  R  E  W  Q  F  A  V  E  K  G  E  S  F  S  I  A  H  V  F  L  S  P  N  N  T  G  V  V  T  V  Y  K  N  P  F  K  L  Y  R  L  G  K  L  R  L  A  L  L  I  S  K  S  *  N  F  I  R  C  T  *  G  *  L  I  Y  *  I  L  R  Y  F  I  Q  S  G  *  S  F  I  A  D  D  R  I  W  Y  L  L  S  S  T  S  F  S  K  C  C  V  *  D  S  Y  H  I  L  T  L  H  L  L  E  K  L  E  L  D  C  S  F  A  S  R  Y  T  F  D  F  S  L  A  T  S  V  Y  T  V  S  L  I  L  A  M  T  S  I  M  Y  T  K  M  F  I  F  L  L  *  Y  T  I  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11985" stop="11857"/>
                    <exon start="11359" stop="10319"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQSGFQNLRCLQIVVVEKLFYRNVIRSSHIASKKQFECSCLLEGNILYATQESDSHSIFMEISRLLSSGAPDLHLANFLHMITTMAESGSNEEQTEFFILNSQKMPKLPESESVWSLANVPLSTDSETGVMSSSRTIDEKNPEKIKKRPGISSSWPPTDWKTAPGFHRSSVCISKGKADSCIQSENNTVGESVMKTWALTATGMTCVENMDNYPESAAVVLGSQGVDHVPGTMMEAFDSPHAMTEPHNPSNSSSDVTERDQLHTATNGNSDIMIETGRLGEYFAFKYFLEKFGEPFVKWVNETNETGLPYDLVVGDDEYIEIKTTRSSTKDWFHITAREWQFAVEKGESFSIAHVFLSPNNTGVVTVYKNPFKLYRLGKLRLALLISKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="33643" PGL_stop="30336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33643" e_stop="33615"/>
            <exon e_start="33354" e_stop="33287"/>
            <exon e_start="32052" e_stop="31981"/>
            <exon e_start="31465" e_stop="31299"/>
            <exon e_start="31188" e_stop="31077"/>
            <exon e_start="30904" e_stop="30336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.112" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33643" e_stop="33615" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33614" i_stop="33355" i_length="260"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33354" e_stop="33287" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33286" i_stop="32053" i_length="1234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32052" e_stop="31981" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.792" acc_prob="0.994">
            <gDNA_intron_boundary i_start="31980" i_stop="31466" i_length="515"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31465" e_stop="31299" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.946" acc_prob="0.988">
            <gDNA_intron_boundary i_start="31298" i_stop="31189" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31188" e_stop="31077" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.112" acc_prob="0.998">
            <gDNA_intron_boundary i_start="31076" i_stop="30905" i_length="172"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="30904" e_stop="30336" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33643" stop="33615"/>
              <exon start="33354" stop="33287"/>
              <exon start="32052" stop="31981"/>
              <exon start="31465" stop="31299"/>
              <exon start="31188" stop="31077"/>
              <exon start="30904" stop="30336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAACCCTAGCTAACCCTCAGCTCTAAG : TGTGAAAAGAGGAACTGATTATTGGAGTGAAGATGGTGATGGGTCAGCCATTTAGTGGCAACATGAAG : AAAGCTCTTGCTGGCATAAAACGTATCAATTTGGAAGGTCTGAGATGGAGAGTGTTTGATGCCAAAGGCCAG : GTCCTGGGAAGGCTAGCATCACAGATATCAACCGTGATTCAAGGAAAAGATAAACCAACATACGCACCTAACCGCGAAGAAGGTGATATGTGCATTGTGCTCAATGCAAAGGACATTTGTGTCACTGGGAGAAAACTCACGGATAAGTTCTATCGATGGCACACTGG : TTACATAGGCCACCTCAAGGAGAGGAGTCTGAAAGACCAGATGGCTAAGGATCCAACAGAAGTTATTCGCAAAGCTGTCCTGCGAATGCTGCCAAGAAATAAGTTGCGTGAT : GATAGAGATCGGAAATTGAGGATTTTTACCAATGATGAGCACCCTTTTGCTGACAGACCTCTAGAGCCGTATGTGATGCCTCCTAGACAAGTTCGTGAGCTGCGCCCTCGTACAAGACGAGCCATGATTCGAGCTGAAAAGAAAGCTGAACAACAGCAACAAGGTACAAACAATACAAGTAAAAGAAAAAAGAACAAGGATGTGGAAGAAGAAGCAGTGAGCACATGAAACATATGAAATTTCGAGTTTGGGCTCTATTTTCCAGCCATAACGCGATCTTGGCGTGGCTTCCGAGATGATTGAAAATTTTCTAGTACCATATTATGACTTGGAATTTTTTTTTTCTGGTTAGTTTGTTTACATGTATTTGTCTTTCACTTCTGGCTGATGTTATATTTGCCTGGAGATGAACCAGGATAGATGATACACTTGAGCATTGTTATTTCCATATGATGCACCAATAATCCCTTCTTTCTAAGCTCTAGTTAGTAGTTATTTCATATATAATTACTATATAGTTAGTAGAGAATGTTTAAACTAATTATATGTATTCAATATAGACAATTCTT</gDNA_template>
            <first_frame> L  N  P  S  *  P  S  A  L  S :   V  K  R  G  T  D  Y  W  S  E  D  G  D  G  S  A  I  *  W  Q  H  E   : E  S  S  C  W  H  K  T  Y  Q  F  G  R  S  E  M  E  S  V  *  C  Q  R  P   : G  P  G  K  A  S  I  T  D  I  N  R  D  S  R  K  R  *  T  N  I  R  T  *  P  R  R  R  *  Y  V  H  C  A  Q  C  K  G  H  L  C  H  W  E  K  T  H  G  *  V  L  S  M  A  H  W  :  L  H  R  P  P  Q  G  E  E  S  E  R  P  D  G  *  G  S  N  R  S  Y  S  Q  S  C  P  A  N  A  A  K  K  *  V  A  *   : *  *  R  S  E  I  E  D  F  Y  Q  *  *  A  P  F  C  *  Q  T  S  R  A  V  C  D  A  S  *  T  S  S  *  A  A  P  S  Y  K  T  S  H  D  S  S  *  K  E  S  *  T  T  A  T  R  Y  K  Q  Y  K  *  K  K  K  E  Q  G  C  G  R  R  S  S  E  H  M  K  H  M  K  F  R  V  W  A  L  F  S  S  H  N  A  I  L  A  W  L  P  R  *  L  K  I  F  *  Y  H  I  M  T  W  N  F  F  F  L  V  S  L  F  T  C  I  C  L  S  L  L  A  D  V  I  F  A  W  R  *  T  R  I  D  D  T  L  E  H  C  Y  F  H  M  M  H  Q  *  S  L  L  S  K  L  *  L  V  V  I  S  Y  I  I  T  I  *  L  V  E  N  V  *  T  N  Y  M  Y  S  I  *  T  I  L </first_frame>
            <second_frame>  *  T  L  A  N  P  Q  L  *   : V  *  K  E  E  L  I  I  G  V  K  M  V  M  G  Q  P  F  S  G  N  M  K  :  K  A  L  A  G  I  K  R  I  N  L  E  G  L  R  W  R  V  F  D  A  K  G  Q  :  V  L  G  R  L  A  S  Q  I  S  T  V  I  Q  G  K  D  K  P  T  Y  A  P  N  R  E  E  G  D  M  C  I  V  L  N  A  K  D  I  C  V  T  G  R  K  L  T  D  K  F  Y  R  W  H  T  G :   Y  I  G  H  L  K  E  R  S  L  K  D  Q  M  A  K  D  P  T  E  V  I  R  K  A  V  L  R  M  L  P  R  N  K  L  R  D  :  D  R  D  R  K  L  R  I  F  T  N  D  E  H  P  F  A  D  R  P  L  E  P  Y  V  M  P  P  R  Q  V  R  E  L  R  P  R  T  R  R  A  M  I  R  A  E  K  K  A  E  Q  Q  Q  Q  G  T  N  N  T  S  K  R  K  K  N  K  D  V  E  E  E  A  V  S  T  *  N  I  *  N  F  E  F  G  L  Y  F  P  A  I  T  R  S  W  R  G  F  R  D  D  *  K  F  S  S  T  I  L  *  L  G  I  F  F  F  W  L  V  C  L  H  V  F  V  F  H  F  W  L  M  L  Y  L  P  G  D  E  P  G  *  M  I  H  L  S  I  V  I  S  I  *  C  T  N  N  P  F  F  L  S  S  S  *  *  L  F  H  I  *  L  L  Y  S  *  *  R  M  F  K  L  I  I  C  I  Q  Y  R  Q  F   </second_frame>
            <third_frame>   K  P  *  L  T  L  S  S  K  :  C  E  K  R  N  *  L  L  E  *  R  W  *  W  V  S  H  L  V  A  T  *  R :   K  L  L  L  A  *  N  V  S  I  W  K  V  *  D  G  E  C  L  M  P  K  A  R :   S  W  E  G  *  H  H  R  Y  Q  P  *  F  K  E  K  I  N  Q  H  T  H  L  T  A  K  K  V  I  C  A  L  C  S  M  Q  R  T  F  V  S  L  G  E  N  S  R  I  S  S  I  D  G  T  L   : V  T  *  A  T  S  R  R  G  V  *  K  T  R  W  L  R  I  Q  Q  K  L  F  A  K  L  S  C  E  C  C  Q  E  I  S  C  V  M :   I  E  I  G  N  *  G  F  L  P  M  M  S  T  L  L  L  T  D  L  *  S  R  M  *  C  L  L  D  K  F  V  S  C  A  L  V  Q  D  E  P  *  F  E  L  K  R  K  L  N  N  S  N  K  V  Q  T  I  Q  V  K  E  K  R  T  R  M  W  K  K  K  Q  *  A  H  E  T  Y  E  I  S  S  L  G  S  I  F  Q  P  *  R  D  L  G  V  A  S  E  M  I  E  N  F  L  V  P  Y  Y  D  L  E  F  F  F  S  G  *  F  V  Y  M  Y  L  S  F  T  S  G  *  C  Y  I  C  L  E  M  N  Q  D  R  *  Y  T  *  A  L  L  F  P  Y  D  A  P  I  I  P  S  F  *  A  L  V  S  S  Y  F  I  Y  N  Y  Y  I  V  S  R  E  C  L  N  *  L  Y  V  F  N  I  D  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33349" stop="33287"/>
                    <exon start="32052" stop="31981"/>
                    <exon start="31465" stop="31299"/>
                    <exon start="31188" stop="31077"/>
                    <exon start="30904" stop="30677"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEELIIGVKMVMGQPFSGNMKKALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNREEGDMCIVLNAKDICVTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFTNDEHPFADRPLEPYVMPPRQVRELRPRTRRAMIRAEKKAEQQQQGTNNTSKRKKNKDVEEEAVST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38167" PGL_stop="35675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38167" e_stop="38128"/>
            <exon e_start="37989" e_stop="37869"/>
            <exon e_start="37562" e_stop="37459"/>
            <exon e_start="36178" e_stop="36047"/>
            <exon e_start="35956" e_stop="35675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.800" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38167" e_stop="38128" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38127" i_stop="37990" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37989" e_stop="37869" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37868" i_stop="37563" i_length="306"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37562" e_stop="37459" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.800">
            <gDNA_intron_boundary i_start="37458" i_stop="36179" i_length="1280"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36178" e_stop="36047" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.923" acc_prob="0.973">
            <gDNA_intron_boundary i_start="36046" i_stop="35957" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="35956" e_stop="35675" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38167" stop="38128"/>
              <exon start="37989" stop="37869"/>
              <exon start="37562" stop="37459"/>
              <exon start="36178" stop="36047"/>
              <exon start="35956" stop="35675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCCTCCTCCACAGTTCTCTCAATCAGCAGCTGCCATG : GCAACAGAAACTGTGAACCCAAAAGCATATCCTCTTGCTGATTCACAGCTTACAACGACCATAATGGATTTGGTTCAACAAGCTGCTAATTATAAGCAGCTTAAAAAGGGTGCTAATGAAG : CTACAAAGACACTAAACAGAGGAATTTCGGAATTCGTTGTCATGGCTGCAGATACTGAGCCTCTTGAAATCCTTCTTCACCTTCCGCTCCTTGCCGAAGATAAG : AATGTGCCGTATGTCTTTGTCCCTTCAAAACAAGCTCTTGGCCGAGCATGTGGTGTTACCCGTCCTGTGATAGCTTGTTCAGTGACGAGCAATGAGGGAAGCCAGTTGAAATCTCAAATACAGCAACTAAAG : GATGCCATTGAGAAGCTCCTCATCTAAATGTTGAGCCTTCTACAGCATGATGAGCCTTTTGAGGCTTGGACTGAAGTAGTTGCCGTCCTGTTAGCGCCTTTTTTTAATCCTTGTTTCATTTTTGTTCGTGAATCTTACAATCACTGTTCTAAGAGTACCGATAAACACATGAAAATTTAATATCAGGTTTACGTTACAGTTAAACTTGAGTTTTATTATATCGTCTATATCTAGGGATCGTAAATTGTAATGAAGGATCCTCTTTGCTTCATTAAATTTTGA</gDNA_template>
            <first_frame> S  S  S  S  T  V  L  S  I  S  S  C  H   : G  N  R  N  C  E  P  K  S  I  S  S  C  *  F  T  A  Y  N  D  H  N  G  F  G  S  T  S  C  *  L  *  A  A  *  K  G  C  *  *  S :   Y  K  D  T  K  Q  R  N  F  G  I  R  C  H  G  C  R  Y  *  A  S  *  N  P  S  S  P  S  A  P  C  R  R  *   : E  C  A  V  C  L  C  P  F  K  T  S  S  W  P  S  M  W  C  Y  P  S  C  D  S  L  F  S  D  E  Q  *  G  K  P  V  E  I  S  N  T  A  T  K   : G  C  H  *  E  A  P  H  L  N  V  E  P  S  T  A  *  *  A  F  *  G  L  D  *  S  S  C  R  P  V  S  A  F  F  *  S  L  F  H  F  C  S  *  I  L  Q  S  L  F  *  E  Y  R  *  T  H  E  N  L  I  S  G  L  R  Y  S  *  T  *  V  L  L  Y  R  L  Y  L  G  I  V  N  C  N  E  G  S  S  L  L  H  *  I  L  </first_frame>
            <second_frame>  L  P  P  P  Q  F  S  Q  S  A  A  A  M  :  A  T  E  T  V  N  P  K  A  Y  P  L  A  D  S  Q  L  T  T  T  I  M  D  L  V  Q  Q  A  A  N  Y  K  Q  L  K  K  G  A  N  E   : A  T  K  T  L  N  R  G  I  S  E  F  V  V  M  A  A  D  T  E  P  L  E  I  L  L  H  L  P  L  L  A  E  D  K  :  N  V  P  Y  V  F  V  P  S  K  Q  A  L  G  R  A  C  G  V  T  R  P  V  I  A  C  S  V  T  S  N  E  G  S  Q  L  K  S  Q  I  Q  Q  L  K  :  D  A  I  E  K  L  L  I  *  M  L  S  L  L  Q  H  D  E  P  F  E  A  W  T  E  V  V  A  V  L  L  A  P  F  F  N  P  C  F  I  F  V  R  E  S  Y  N  H  C  S  K  S  T  D  K  H  M  K  I  *  Y  Q  V  Y  V  T  V  K  L  E  F  Y  Y  I  V  Y  I  *  G  S  *  I  V  M  K  D  P  L  C  F  I  K  F  * </second_frame>
            <third_frame>   F  L  L  H  S  S  L  N  Q  Q  L  P  W :   Q  Q  K  L  *  T  Q  K  H  I  L  L  L  I  H  S  L  Q  R  P  *  W  I  W  F  N  K  L  L  I  I  S  S  L  K  R  V  L  M  K  :  L  Q  R  H  *  T  E  E  F  R  N  S  L  S  W  L  Q  I  L  S  L  L  K  S  F  F  T  F  R  S  L  P  K  I  R :   M  C  R  M  S  L  S  L  Q  N  K  L  L  A  E  H  V  V  L  P  V  L  *  *  L  V  Q  *  R  A  M  R  E  A  S  *  N  L  K  Y  S  N  *  R :   M  P  L  R  S  S  S  S  K  C  *  A  F  Y  S  M  M  S  L  L  R  L  G  L  K  *  L  P  S  C  *  R  L  F  L  I  L  V  S  F  L  F  V  N  L  T  I  T  V  L  R  V  P  I  N  T  *  K  F  N  I  R  F  T  L  Q  L  N  L  S  F  I  I  S  S  I  S  R  D  R  K  L  *  *  R  I  L  F  A  S  L  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38166" stop="38128"/>
                    <exon start="37989" stop="37869"/>
                    <exon start="37562" stop="37459"/>
                    <exon start="36178" stop="36047"/>
                    <exon start="35956" stop="35930"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPPPQFSQSAAAMATETVNPKAYPLADSQLTTTIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKSQIQQLKDAIEKLLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="45736" PGL_stop="39054"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45736" e_stop="45676"/>
            <exon e_start="45477" e_stop="45373"/>
            <exon e_start="44514" e_stop="44362"/>
            <exon e_start="43593" e_stop="43495"/>
            <exon e_start="43417" e_stop="43289"/>
            <exon e_start="41913" e_stop="41734"/>
            <exon e_start="40500" e_stop="40384"/>
            <exon e_start="39463" e_stop="39054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.136" acc_prob="0.080" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.770" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.781" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45736" e_stop="45676" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.984">
            <gDNA_intron_boundary i_start="45675" i_stop="45478" i_length="198"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45477" e_stop="45373" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.136" acc_prob="0.080">
            <gDNA_intron_boundary i_start="45372" i_stop="44515" i_length="858"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44514" e_stop="44362" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44361" i_stop="43594" i_length="768"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43593" e_stop="43495" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.946">
            <gDNA_intron_boundary i_start="43494" i_stop="43418" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43417" e_stop="43289" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.884" acc_prob="0.770">
            <gDNA_intron_boundary i_start="43288" i_stop="41914" i_length="1375"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41913" e_stop="41734" e_length="180"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.988">
            <gDNA_intron_boundary i_start="41733" i_stop="40501" i_length="1233"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40500" e_stop="40384" e_length="117"/>
          </exon>
          <intron i_serial="7" don_prob="0.781" acc_prob="0.982">
            <gDNA_intron_boundary i_start="40383" i_stop="39464" i_length="920"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="39463" e_stop="39054" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45736" stop="45676"/>
              <exon start="45477" stop="45373"/>
              <exon start="44514" stop="44362"/>
              <exon start="43593" stop="43495"/>
              <exon start="43417" stop="43289"/>
              <exon start="41913" stop="41734"/>
              <exon start="40500" stop="40384"/>
              <exon start="39463" stop="39054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGAGGCTAGCATCACAAGGGATACCAGATGGAGCTGGCATTCGTGCTACAGTGTGGAAG : CTGCTATTGGGATATTTGCCGACCGAGAAAGCACTATGGCCAACAGAGTTGGTTAAAAAGAGGTCTCAATACAAGCATTTTAAAGAGGAGCTTTTGGTGAATCCT : TCGGAGATTACGAGGAAGTTGGAGAAGTCGGTAATACTTGATGATGAAGGAACAGTTATAGAGGACAAGGGTGCACTCCCAAGATCAGAGATACCTCAAGGAGAGCATCCTTTAAGTCTTGGGAAGAATAGCATATGGAATCAGTTCTTCCAG : GACACGGAAATAATTGAACAGATAGATCGAGATGTCAAGCGCACACATCCAGACCTGCACTTTTTCTCTGGGGACACACCATTTGCAAAATCTAACCAG : GACTCTCTGAGGAATATACTCATTATCTTTGCCAAACTCAATCCTGGTATAAGATACGTGCAAGGGATGAATGAAGTATTGGCTCCACTATTCTATGTATTCAGGAACGATCCCAATGAGGAAAATGCA : GCATCTGCAGAAGCAGACACTTTCTTCTGCTTCGTGGAGCTATTGAGTGGATTTCGTGATCATTTTTGTCAGCAACTTGACAATAGTGTTGTTGGAATTCGTTCTACAATTACAAAGTTATCACAATTTCTGAAAGAACATGATGAGGAGCTCTGGCGGCATCTTGAAATGACAACCAAA : GTGAATCCACAGTTCTACGCATTCAGATGGATAACACTTCTGCTAACACAAGAATTCAACTTCCCGGACAGCCTGCTTATATGGGACACACTACTAAGTGATCCTGAAGGACCTCTG : GAAACGCTGCTTCGAGTCTGCTGTGCTATGTTAATTATTGTTCGGAGGCGTCTACTTGCTGGGGATTTCACTTCTAATTTGAAGCTACTCCAAAATTATCCATCCACAAATATCAGTCACCTCCTCTACGTAGCCAACAAACTACGCGTTAAATCAGTCTAAATCTGTCAAAGCGGAAAAGAGATTTTGGTTGGTCCAGTCTAATTCTTTGTATTTCTTGGTGTTGTGATGTAAATGTCTCGTCAATTCAGTGGTAGGCATCTGCAAACTCCCTCCCCCTCTCTTCCCTTCTCTCCCAATCATTCGTCTTGCATTTTGTTCTCGTGTTTACGCTTATCAGTGAGTGTTAAAAGCTGTTGTTTTTTGGCTTTGGAAATATTTATTGTATTCTCAAATGCATTCCTCACAAA</gDNA_template>
            <first_frame> Q  E  A  S  I  T  R  D  T  R  W  S  W  H  S  C  Y  S  V  E   : A  A  I  G  I  F  A  D  R  E  S  T  M  A  N  R  V  G  *  K  E  V  S  I  Q  A  F  *  R  G  A  F  G  E  S   : F  G  D  Y  E  E  V  G  E  V  G  N  T  *  *  *  R  N  S  Y  R  G  Q  G  C  T  P  K  I  R  D  T  S  R  R  A  S  F  K  S  W  E  E  *  H  M  E  S  V  L  P   : G  H  G  N  N  *  T  D  R  S  R  C  Q  A  H  T  S  R  P  A  L  F  L  W  G  H  T  I  C  K  I  *  P   : G  L  S  E  E  Y  T  H  Y  L  C  Q  T  Q  S  W  Y  K  I  R  A  R  D  E  *  S  I  G  S  T  I  L  C  I  Q  E  R  S  Q  *  G  K  C   : S  I  C  R  S  R  H  F  L  L  L  R  G  A  I  E  W  I  S  *  S  F  L  S  A  T  *  Q  *  C  C  W  N  S  F  Y  N  Y  K  V  I  T  I  S  E  R  T  *  *  G  A  L  A  A  S  *  N  D  N  Q   : S  E  S  T  V  L  R  I  Q  M  D  N  T  S  A  N  T  R  I  Q  L  P  G  Q  P  A  Y  M  G  H  T  T  K  *  S  *  R  T  S   : G  N  A  A  S  S  L  L  C  Y  V  N  Y  C  S  E  A  S  T  C  W  G  F  H  F  *  F  E  A  T  P  K  L  S  I  H  K  Y  Q  S  P  P  L  R  S  Q  Q  T  T  R  *  I  S  L  N  L  S  K  R  K  R  D  F  G  W  S  S  L  I  L  C  I  S  W  C  C  D  V  N  V  S  S  I  Q  W  *  A  S  A  N  S  L  P  L  S  S  L  L  S  Q  S  F  V  L  H  F  V  L  V  F  T  L  I  S  E  C  *  K  L  L  F  F  G  F  G  N  I  Y  C  I  L  K  C  I  P  H  K </first_frame>
            <second_frame>  R  R  L  A  S  Q  G  I  P  D  G  A  G  I  R  A  T  V  W  K  :  L  L  L  G  Y  L  P  T  E  K  A  L  W  P  T  E  L  V  K  K  R  S  Q  Y  K  H  F  K  E  E  L  L  V  N  P  :  S  E  I  T  R  K  L  E  K  S  V  I  L  D  D  E  G  T  V  I  E  D  K  G  A  L  P  R  S  E  I  P  Q  G  E  H  P  L  S  L  G  K  N  S  I  W  N  Q  F  F  Q  :  D  T  E  I  I  E  Q  I  D  R  D  V  K  R  T  H  P  D  L  H  F  F  S  G  D  T  P  F  A  K  S  N  Q  :  D  S  L  R  N  I  L  I  I  F  A  K  L  N  P  G  I  R  Y  V  Q  G  M  N  E  V  L  A  P  L  F  Y  V  F  R  N  D  P  N  E  E  N  A  :  A  S  A  E  A  D  T  F  F  C  F  V  E  L  L  S  G  F  R  D  H  F  C  Q  Q  L  D  N  S  V  V  G  I  R  S  T  I  T  K  L  S  Q  F  L  K  E  H  D  E  E  L  W  R  H  L  E  M  T  T  K  :  V  N  P  Q  F  Y  A  F  R  W  I  T  L  L  L  T  Q  E  F  N  F  P  D  S  L  L  I  W  D  T  L  L  S  D  P  E  G  P  L  :  E  T  L  L  R  V  C  C  A  M  L  I  I  V  R  R  R  L  L  A  G  D  F  T  S  N  L  K  L  L  Q  N  Y  P  S  T  N  I  S  H  L  L  Y  V  A  N  K  L  R  V  K  S  V  *  I  C  Q  S  G  K  E  I  L  V  G  P  V  *  F  F  V  F  L  G  V  V  M  *  M  S  R  Q  F  S  G  R  H  L  Q  T  P  S  P  S  L  P  F  S  P  N  H  S  S  C  I  L  F  S  C  L  R  L  S  V  S  V  K  S  C  C  F  L  A  L  E  I  F  I  V  F  S  N  A  F  L  T   </second_frame>
            <third_frame>   G  G  *  H  H  K  G  Y  Q  M  E  L  A  F  V  L  Q  C  G  S :   C  Y  W  D  I  C  R  P  R  K  H  Y  G  Q  Q  S  W  L  K  R  G  L  N  T  S  I  L  K  R  S  F  W  *  I  L :   R  R  L  R  G  S  W  R  S  R  *  Y  L  M  M  K  E  Q  L  *  R  T  R  V  H  S  Q  D  Q  R  Y  L  K  E  S  I  L  *  V  L  G  R  I  A  Y  G  I  S  S  S  R :   T  R  K  *  L  N  R  *  I  E  M  S  S  A  H  I  Q  T  C  T  F  S  L  G  T  H  H  L  Q  N  L  T  R :   T  L  *  G  I  Y  S  L  S  L  P  N  S  I  L  V  *  D  T  C  K  G  *  M  K  Y  W  L  H  Y  S  M  Y  S  G  T  I  P  M  R  K  M  Q :   H  L  Q  K  Q  T  L  S  S  A  S  W  S  Y  *  V  D  F  V  I  I  F  V  S  N  L  T  I  V  L  L  E  F  V  L  Q  L  Q  S  Y  H  N  F  *  K  N  M  M  R  S  S  G  G  I  L  K  *  Q  P  K :   *  I  H  S  S  T  H  S  D  G  *  H  F  C  *  H  K  N  S  T  S  R  T  A  C  L  Y  G  T  H  Y  *  V  I  L  K  D  L  W :   K  R  C  F  E  S  A  V  L  C  *  L  L  F  G  G  V  Y  L  L  G  I  S  L  L  I  *  S  Y  S  K  I  I  H  P  Q  I  S  V  T  S  S  T  *  P  T  N  Y  A  L  N  Q  S  K  S  V  K  A  E  K  R  F  W  L  V  Q  S  N  S  L  Y  F  L  V  L  *  C  K  C  L  V  N  S  V  V  G  I  C  K  L  P  P  P  L  F  P  S  L  P  I  I  R  L  A  F  C  S  R  V  Y  A  Y  Q  *  V  L  K  A  V  V  F  W  L  W  K  Y  L  L  Y  S  Q  M  H  S  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45735" stop="45676"/>
                    <exon start="45477" stop="45373"/>
                    <exon start="44514" stop="44362"/>
                    <exon start="43593" stop="43495"/>
                    <exon start="43417" stop="43289"/>
                    <exon start="41913" stop="41734"/>
                    <exon start="40500" stop="40384"/>
                    <exon start="39463" stop="39302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLASQGIPDGAGIRATVWKLLLGYLPTEKALWPTELVKKRSQYKHFKEELLVNPSEITRKLEKSVILDDEGTVIEDKGALPRSEIPQGEHPLSLGKNSIWNQFFQDTEIIEQIDRDVKRTHPDLHFFSGDTPFAKSNQDSLRNILIIFAKLNPGIRYVQGMNEVLAPLFYVFRNDPNEENAASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRSTITKLSQFLKEHDEELWRHLEMTTKVNPQFYAFRWITLLLTQEFNFPDSLLIWDTLLSDPEGPLETLLRVCCAMLIIVRRRLLAGDFTSNLKLLQNYPSTNISHLLYVANKLRVKSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="46917" PGL_stop="46327"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46917" e_stop="46327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46917" e_stop="46327" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46917" stop="46327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGATGTTCCCACGACTTCTCTTCCTCTCACTGCAATGACACCTCGCCGGAGTATCAACACCGCCGGCGTATCAATCCTACCGTATCTGCCGAATTCACTTATTCAGCCACCGTATGCTCCGCCGTTGTATCAATTCTGTTTTTAAAAAATAAGCCCTACGATATGGTTAACAAACGCGTTCCCGATTGGCTCAACAGCTCACTCTGGTCGTCTCCTGGACCACAACCTTCAGTTCAATCTCCATCTTCATCGCCGACGCCGTTAAATGAGGATGACAACCGGTCTACACGTTCAGCTACTAAATCATCTACTGTTACTGTTAACGCCGTTAAAGCTGGTGGTTCGGCTAATGACGGAGAGTTAACGGTCGAACGGCCTGGTTCAATGACGGCAGCCCCGGCAGTGGTTAGAGCGGAGACTAGGCACGGGCCTCCACGCGCTAAAGCGGAAATTAGAGATCCTTTGAGTAGTAGTAGTAATTATCATAGTGATGATGAAAATGGAAGTTCCGCTAGTAGTACAATGACGTCTGCATCTGCTGCTGCTGCAGCAGCTATTTCGTCAGCTGAGGATATTTCTCGTCAGGCTC</gDNA_template>
            <first_frame> Y  D  V  P  T  T  S  L  P  L  T  A  M  T  P  R  R  S  I  N  T  A  G  V  S  I  L  P  Y  L  P  N  S  L  I  Q  P  P  Y  A  P  P  L  Y  Q  F  C  F  *  K  I  S  P  T  I  W  L  T  N  A  F  P  I  G  S  T  A  H  S  G  R  L  L  D  H  N  L  Q  F  N  L  H  L  H  R  R  R  R  *  M  R  M  T  T  G  L  H  V  Q  L  L  N  H  L  L  L  L  L  T  P  L  K  L  V  V  R  L  M  T  E  S  *  R  S  N  G  L  V  Q  *  R  Q  P  R  Q  W  L  E  R  R  L  G  T  G  L  H  A  L  K  R  K  L  E  I  L  *  V  V  V  V  I  I  I  V  M  M  K  M  E  V  P  L  V  V  Q  *  R  L  H  L  L  L  L  Q  Q  L  F  R  Q  L  R  I  F  L  V  R  L </first_frame>
            <second_frame>  T  M  F  P  R  L  L  F  L  S  L  Q  *  H  L  A  G  V  S  T  P  P  A  Y  Q  S  Y  R  I  C  R  I  H  L  F  S  H  R  M  L  R  R  C  I  N  S  V  F  K  K  *  A  L  R  Y  G  *  Q  T  R  S  R  L  A  Q  Q  L  T  L  V  V  S  W  T  T  T  F  S  S  I  S  I  F  I  A  D  A  V  K  *  G  *  Q  P  V  Y  T  F  S  Y  *  I  I  Y  C  Y  C  *  R  R  *  S  W  W  F  G  *  *  R  R  V  N  G  R  T  A  W  F  N  D  G  S  P  G  S  G  *  S  G  D  *  A  R  A  S  T  R  *  S  G  N  *  R  S  F  E  *  *  *  *  L  S  *  *  *  *  K  W  K  F  R  *  *  Y  N  D  V  C  I  C  C  C  C  S  S  Y  F  V  S  *  G  Y  F  S  S  G   </second_frame>
            <third_frame>   R  C  S  H  D  F  S  S  S  H  C  N  D  T  S  P  E  Y  Q  H  R  R  R  I  N  P  T  V  S  A  E  F  T  Y  S  A  T  V  C  S  A  V  V  S  I  L  F  L  K  N  K  P  Y  D  M  V  N  K  R  V  P  D  W  L  N  S  S  L  W  S  S  P  G  P  Q  P  S  V  Q  S  P  S  S  S  P  T  P  L  N  E  D  D  N  R  S  T  R  S  A  T  K  S  S  T  V  T  V  N  A  V  K  A  G  G  S  A  N  D  G  E  L  T  V  E  R  P  G  S  M  T  A  A  P  A  V  V  R  A  E  T  R  H  G  P  P  R  A  K  A  E  I  R  D  P  L  S  S  S  S  N  Y  H  S  D  D  E  N  G  S  S  A  S  S  T  M  T  S  A  S  A  A  A  A  A  A  I  S  S  A  E  D  I  S  R  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46915" stop="46328"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCSHDFSSSHCNDTSPEYQHRRRINPTVSAEFTYSATVCSAVVSILFLKNKPYDMVNKRVPDWLNSSLWSSPGPQPSVQSPSSSPTPLNEDDNRSTRSATKSSTVTVNAVKAGGSANDGELTVERPGSMTAAPAVVRAETRHGPPRAKAEIRDPLSSSSNYHSDDENGSSASSTMTSASAAAAAAISSAEDISRQA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="60434" PGL_stop="55557"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60434" e_stop="60239"/>
            <exon e_start="57158" e_stop="57021"/>
            <exon e_start="56677" e_stop="56597"/>
            <exon e_start="56507" e_stop="56436"/>
            <exon e_start="56343" e_stop="56224"/>
            <exon e_start="55929" e_stop="55557"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.814" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60434" e_stop="60239" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.814">
            <gDNA_intron_boundary i_start="60238" i_stop="57159" i_length="3080"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57158" e_stop="57021" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57020" i_stop="56678" i_length="343"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56677" e_stop="56597" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56596" i_stop="56508" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56507" e_stop="56436" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.908" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56435" i_stop="56344" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56343" e_stop="56224" e_length="120"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56223" i_stop="55930" i_length="294"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55929" e_stop="55557" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60434" stop="60239"/>
              <exon start="57158" stop="57021"/>
              <exon start="56677" stop="56597"/>
              <exon start="56507" stop="56436"/>
              <exon start="56343" stop="56224"/>
              <exon start="55929" stop="55559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55840" stop="55557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGTAAAAACGGCAAGTGAGATGGCGGCGACAAATATTTTACTGCAGTGCGGCGATCGTGGAACTCTGCTTGGATCTGCTGCAGAAGCTCAGCAACACGCACAGGAGTTTTGTCACACCAACTACTACGAGTCCCAAGAAGCCATTCGCTTTATTGTTTGCTATAATTGCGGTCACAAATGTTCCTGCGAAACC : GAGAGCGTTATACATTCAAGAAAGTCTGGGCATACTGAATTTTATGATAGGACAGCAGAGGTGACGGAAGAGGCAGCAAGAAGAAACAGAGCTAACATTCGTCAGATGCTGAGAGTAGCTATTGATCGTTTGGACGAG : GCTGATACTTCAGAGGGAGCAAGAAGGCAGCAGCAGCAGCAGCTTGGTTTGCCTTCGAGACCTGTTTTACAGGAAGGACAG : AGTTCATTGACTCTAGCTGCAAAGGTCGAGCAGATGGCTGAGTGCCTGCGGACTATCCAGCAGAATTCCATG : GATGACGCGGCCAAAGTCATGCAAGCTTTCAACTCACTGCGTATGTTTGTTAGGAATATTGCTACGAATCCTGATGAGGAGAAATACCGCAAAATTAGAATCAGCAATACTGCATTCCAG : GCGAGGGTTGGCCACCTACGAGGAGGTATCGAGTTCCTTGAGGTCTGTGGATTCGAAAGAACTATAGGGGGTGAACACTTGTACATGCAGAGAGAAAATGTGGACTCTGATGTGCTTTATGCAGCTGCAAATGTGCTCAACAATGCCATTGGAAATGCATAATATAGAAGTTACATGTGGTGTTGTTGTTTAGCAAATCAAGGAGTTAAAAAACATATGCTTTTGTGGAAAACAATTATTTTGTGTTTTGACATTTTGTTATCAAACATATAATCTTGTTTTACTCTTTTAATGTGATGTAATTTGATCGTTGATACATGTATTGAAAAGTCTTAAATATGTTATGAGATTTATGAGTCGTACTTATTAAACA</gDNA_template>
            <first_frame> R  S  K  N  G  K  *  D  G  G  D  K  Y  F  T  A  V  R  R  S  W  N  S  A  W  I  C  C  R  S  S  A  T  R  T  G  V  L  S  H  Q  L  L  R  V  P  R  S  H  S  L  Y  C  L  L  *  L  R  S  Q  M  F  L  R  N   : R  E  R  Y  T  F  K  K  V  W  A  Y  *  I  L  *  *  D  S  R  G  D  G  R  G  S  K  K  K  Q  S  *  H  S  S  D  A  E  S  S  Y  *  S  F  G  R   : G  *  Y  F  R  G  S  K  K  A  A  A  A  A  A  W  F  A  F  E  T  C  F  T  G  R  T   : E  F  I  D  S  S  C  K  G  R  A  D  G  *  V  P  A  D  Y  P  A  E  F  H   : G  *  R  G  Q  S  H  A  S  F  Q  L  T  A  Y  V  C  *  E  Y  C  Y  E  S  *  *  G  E  I  P  Q  N  *  N  Q  Q  Y  C  I  P   : G  E  G  W  P  P  T  R  R  Y  R  V  P  *  G  L  W  I  R  K  N  Y  R  G  *  T  L  V  H  A  E  R  K  C  G  L  *  C  A  L  C  S  C  K  C  A  Q  Q  C  H  W  K  C  I  I  *  K  L  H  V  V  L  L  F  S  K  S  R  S  *  K  T  Y  A  F  V  E  N  N  Y  F  V  F  *  H  F  V  I  K  H  I  I  L  F  Y  S  F  N  V  M  *  F  D  R  *  Y  M  Y  *  K  V  L  N  M  L  *  D  L  *  V  V  L  I  K   </first_frame>
            <second_frame>  E  V  K  T  A  S  E  M  A  A  T  N  I  L  L  Q  C  G  D  R  G  T  L  L  G  S  A  A  E  A  Q  Q  H  A  Q  E  F  C  H  T  N  Y  Y  E  S  Q  E  A  I  R  F  I  V  C  Y  N  C  G  H  K  C  S  C  E  T  :  E  S  V  I  H  S  R  K  S  G  H  T  E  F  Y  D  R  T  A  E  V  T  E  E  A  A  R  R  N  R  A  N  I  R  Q  M  L  R  V  A  I  D  R  L  D  E  :  A  D  T  S  E  G  A  R  R  Q  Q  Q  Q  Q  L  G  L  P  S  R  P  V  L  Q  E  G  Q  :  S  S  L  T  L  A  A  K  V  E  Q  M  A  E  C  L  R  T  I  Q  Q  N  S  M  :  D  D  A  A  K  V  M  Q  A  F  N  S  L  R  M  F  V  R  N  I  A  T  N  P  D  E  E  K  Y  R  K  I  R  I  S  N  T  A  F  Q  :  A  R  V  G  H  L  R  G  G  I  E  F  L  E  V  C  G  F  E  R  T  I  G  G  E  H  L  Y  M  Q  R  E  N  V  D  S  D  V  L  Y  A  A  A  N  V  L  N  N  A  I  G  N  A  *  Y  R  S  Y  M  W  C  C  C  L  A  N  Q  G  V  K  K  H  M  L  L  W  K  T  I  I  L  C  F  D  I  L  L  S  N  I  *  S  C  F  T  L  L  M  *  C  N  L  I  V  D  T  C  I  E  K  S  *  I  C  Y  E  I  Y  E  S  Y  L  L  N  </second_frame>
            <third_frame>   K  *  K  R  Q  V  R  W  R  R  Q  I  F  Y  C  S  A  A  I  V  E  L  C  L  D  L  L  Q  K  L  S  N  T  H  R  S  F  V  T  P  T  T  T  S  P  K  K  P  F  A  L  L  F  A  I  I  A  V  T  N  V  P  A  K  P :   R  A  L  Y  I  Q  E  S  L  G  I  L  N  F  M  I  G  Q  Q  R  *  R  K  R  Q  Q  E  E  T  E  L  T  F  V  R  C  *  E  *  L  L  I  V  W  T  R :   L  I  L  Q  R  E  Q  E  G  S  S  S  S  S  L  V  C  L  R  D  L  F  Y  R  K  D  R :   V  H  *  L  *  L  Q  R  S  S  R  W  L  S  A  C  G  L  S  S  R  I  P  W :   M  T  R  P  K  S  C  K  L  S  T  H  C  V  C  L  L  G  I  L  L  R  I  L  M  R  R  N  T  A  K  L  E  S  A  I  L  H  S  R :   R  G  L  A  T  Y  E  E  V  S  S  S  L  R  S  V  D  S  K  E  L  *  G  V  N  T  C  T  C  R  E  K  M  W  T  L  M  C  F  M  Q  L  Q  M  C  S  T  M  P  L  E  M  H  N  I  E  V  T  C  G  V  V  V  *  Q  I  K  E  L  K  N  I  C  F  C  G  K  Q  L  F  C  V  L  T  F  C  Y  Q  T  Y  N  L  V  L  L  F  *  C  D  V  I  *  S  L  I  H  V  L  K  S  L  K  Y  V  M  R  F  M  S  R  T  Y  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60433" stop="60239"/>
                    <exon start="57158" stop="57021"/>
                    <exon start="56677" stop="56597"/>
                    <exon start="56507" stop="56436"/>
                    <exon start="56343" stop="56224"/>
                    <exon start="55929" stop="55768"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVKTASEMAATNILLQCGDRGTLLGSAAEAQQHAQEFCHTNYYESQEAIRFIVCYNCGHKCSCETESVIHSRKSGHTEFYDRTAEVTEEAARRNRANIRQMLRVAIDRLDEADTSEGARRQQQQQLGLPSRPVLQEGQSSLTLAAKVEQMAECLRTIQQNSMDDAAKVMQAFNSLRMFVRNIATNPDEEKYRKIRISNTAFQARVGHLRGGIEFLEVCGFERTIGGEHLYMQRENVDSDVLYAAANVLNNAIGNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="62222" PGL_stop="68970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62222" e_stop="62792"/>
            <exon e_start="63386" e_stop="63592"/>
            <exon e_start="64959" e_stop="65139"/>
            <exon e_start="66198" e_stop="66309"/>
            <exon e_start="66895" e_stop="67122"/>
            <exon e_start="68773" e_stop="68970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62222" e_stop="62792" e_length="571"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.587">
            <gDNA_intron_boundary i_start="62793" i_stop="63385" i_length="593"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63386" e_stop="63592" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63593" i_stop="64958" i_length="1366"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64959" e_stop="65139" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.789">
            <gDNA_intron_boundary i_start="65140" i_stop="66197" i_length="1058"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66198" e_stop="66309" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.876">
            <gDNA_intron_boundary i_start="66310" i_stop="66894" i_length="585"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66895" e_stop="67122" e_length="228"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67123" i_stop="68772" i_length="1650"/>
          </intron>
          <exon e_serial="6" e_score="0.970">
            <gDNA_exon_boundary e_start="68773" e_stop="68970" e_length="198"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62222" stop="62792"/>
              <exon start="63386" stop="63592"/>
              <exon start="64959" stop="65139"/>
              <exon start="66198" stop="66309"/>
              <exon start="66895" stop="67122"/>
              <exon start="68773" stop="68970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320556" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAGAGATTTTCACAAAAAGGAAATTCCCAACCCTTTACCATTTTTCTTGTTCAAAGCAAAATCTCATCACATTTGAAGAAAATTGATCAAAGAAAGTGAAAAATCAAACACAAAAATCCCAAAAATTTCTTCAATCCCATAGTTTTTTCTCCAAAACCCATCTTCCCCTTTTCAAATCTTCTTGATTCTCAAACCCTAATTCATAAATTCTCCTTAAATTTTGCATATTGAGTTTCAAAAATGGTGTTTTTGGAACCTTAATTTTCAAGATTTGGAGGAGTACCATGATGAGAAGTATATGGTGGTGGGAGAAAAACCATGATTTCCTACTACCCTTTTTGAGTTATTGTAAGATTCAATCAAAATCGACTGGTTTAGTTGTGAATGGAACCGAAGAAAGTAGCTTCATCTGGGGAAATTCAGAATAAAAAAGAGAAAAACTTGAAGAGCATACAGTGGGAAGATTATGAACAGGAATTAGTTCGTTTGTGTAGTCTTACATCTGCTCTTAATGAAGCTAAGGAGAAGAAAGAATTGGTTCAGCAGAAACTACAGTCATTTATACAG : GTAGAAGCAGAGTCACTAAGTCGTTTGAATGAGCTTGATGAGATGAAAGAAAAACTGGATTCTAGAAAATTAGTGATGGGAAACATGTCAATGCATTCTAAAGTTGTCAAAGAGAAAGTCAAGAAGCAAGAGGAGCAACTTAGTAATGACATCAGGTCACTTTTGGTTGCAGGGACTTCTCTTTCTGCAGCTAGCAAGCGCTTGCAG : GATGAAAGTAGGTCCCTAGCTGGAGAAAGGGGTTATGGGCAACTCAGAACCTTGCAGAGAGTATTCAGAACGAGACAACAGTATATGGTGTCTCAAGTTCACATGCTTTATCCTGTGAGGGTTGCAATTGGACAGGCACCTGAGCAAGAACTTGAATTTTTCAACAATAGTTCCAGCTCAG : GTGACTCTGCTGGGTCAAAACCTTTAGATCACGGATCCTTGACCATTGCGGGTCTACATTTAACCGTGTTCACTAAGATGAGTTTCTTTACTGATAAGAAGGAGGTTCAGAG : GTGGTCACACTTATTGCATCTTATTTACAAGTTCCTCTTCGTTATCCCTTGAGGTTTGGAGGATCTCGATCATATATCCGTGATTATGCTCCTTCAGTAGAGCCATCATCATCTGATTTAACATCTAGTTCCGCAGTTTCCACAAATTCACGACCCGTGGAATTTCCTCTATTTTTAGAAGGCCAAGACTCAACAAGAGCGGCGTATGCTGTTTTCTTGCTGAATAAG : GATATAGAACAACTTCTTAATTATATTGGAGGCAGAAGTACAGGGCCAAGACATGTACTAGCTAATTTGAAAGAGCTTCTTAGAATAATACTTTCTCCAGAGTATATAGACACATCATTATGAGATTTATGTAAATGTAGATCATTGTTATTTTTTTATACAGGTGCTAAATTTTCACTTAAAGCACCTTGCTTTAGC</gDNA_template>
            <first_frame> K  K  E  I  F  T  K  R  K  F  P  T  L  Y  H  F  S  C  S  K  Q  N  L  I  T  F  E  E  N  *  S  K  K  V  K  N  Q  T  Q  K  S  Q  K  F  L  Q  S  H  S  F  F  S  K  T  H  L  P  L  F  K  S  S  *  F  S  N  P  N  S  *  I  L  L  K  F  C  I  L  S  F  K  N  G  V  F  G  T  L  I  F  K  I  W  R  S  T  M  M  R  S  I  W  W  W  E  K  N  H  D  F  L  L  P  F  L  S  Y  C  K  I  Q  S  K  S  T  G  L  V  V  N  G  T  E  E  S  S  F  I  W  G  N  S  E  *  K  R  E  K  L  E  E  H  T  V  G  R  L  *  T  G  I  S  S  F  V  *  S  Y  I  C  S  *  *  S  *  G  E  E  R  I  G  S  A  E  T  T  V  I  Y  T   : G  R  S  R  V  T  K  S  F  E  *  A  *  *  D  E  R  K  T  G  F  *  K  I  S  D  G  K  H  V  N  A  F  *  S  C  Q  R  E  S  Q  E  A  R  G  A  T  *  *  *  H  Q  V  T  F  G  C  R  D  F  S  F  C  S  *  Q  A  L  A   : G  *  K  *  V  P  S  W  R  K  G  L  W  A  T  Q  N  L  A  E  S  I  Q  N  E  T  T  V  Y  G  V  S  S  S  H  A  L  S  C  E  G  C  N  W  T  G  T  *  A  R  T  *  I  F  Q  Q  *  F  Q  L  R :   *  L  C  W  V  K  T  F  R  S  R  I  L  D  H  C  G  S  T  F  N  R  V  H  *  D  E  F  L  Y  *  *  E  G  G  S  E  :  V  V  T  L  I  A  S  Y  L  Q  V  P  L  R  Y  P  L  R  F  G  G  S  R  S  Y  I  R  D  Y  A  P  S  V  E  P  S  S  S  D  L  T  S  S  S  A  V  S  T  N  S  R  P  V  E  F  P  L  F  L  E  G  Q  D  S  T  R  A  A  Y  A  V  F  L  L  N  K  :  D  I  E  Q  L  L  N  Y  I  G  G  R  S  T  G  P  R  H  V  L  A  N  L  K  E  L  L  R  I  I  L  S  P  E  Y  I  D  T  S  L  *  D  L  C  K  C  R  S  L  L  F  F  Y  T  G  A  K  F  S  L  K  A  P  C  F  S </first_frame>
            <second_frame>  K  K  R  F  S  Q  K  G  N  S  Q  P  F  T  I  F  L  V  Q  S  K  I  S  S  H  L  K  K  I  D  Q  R  K  *  K  I  K  H  K  N  P  K  N  F  F  N  P  I  V  F  S  P  K  P  I  F  P  F  S  N  L  L  D  S  Q  T  L  I  H  K  F  S  L  N  F  A  Y  *  V  S  K  M  V  F  L  E  P  *  F  S  R  F  G  G  V  P  *  *  E  V  Y  G  G  G  R  K  T  M  I  S  Y  Y  P  F  *  V  I  V  R  F  N  Q  N  R  L  V  *  L  *  M  E  P  K  K  V  A  S  S  G  E  I  Q  N  K  K  E  K  N  L  K  S  I  Q  W  E  D  Y  E  Q  E  L  V  R  L  C  S  L  T  S  A  L  N  E  A  K  E  K  K  E  L  V  Q  Q  K  L  Q  S  F  I  Q  :  V  E  A  E  S  L  S  R  L  N  E  L  D  E  M  K  E  K  L  D  S  R  K  L  V  M  G  N  M  S  M  H  S  K  V  V  K  E  K  V  K  K  Q  E  E  Q  L  S  N  D  I  R  S  L  L  V  A  G  T  S  L  S  A  A  S  K  R  L  Q  :  D  E  S  R  S  L  A  G  E  R  G  Y  G  Q  L  R  T  L  Q  R  V  F  R  T  R  Q  Q  Y  M  V  S  Q  V  H  M  L  Y  P  V  R  V  A  I  G  Q  A  P  E  Q  E  L  E  F  F  N  N  S  S  S  S   : G  D  S  A  G  S  K  P  L  D  H  G  S  L  T  I  A  G  L  H  L  T  V  F  T  K  M  S  F  F  T  D  K  K  E  V  Q  R :   W  S  H  L  L  H  L  I  Y  K  F  L  F  V  I  P  *  G  L  E  D  L  D  H  I  S  V  I  M  L  L  Q  *  S  H  H  H  L  I  *  H  L  V  P  Q  F  P  Q  I  H  D  P  W  N  F  L  Y  F  *  K  A  K  T  Q  Q  E  R  R  M  L  F  S  C  *  I  R :   I  *  N  N  F  L  I  I  L  E  A  E  V  Q  G  Q  D  M  Y  *  L  I  *  K  S  F  L  E  *  Y  F  L  Q  S  I  *  T  H  H  Y  E  I  Y  V  N  V  D  H  C  Y  F  F  I  Q  V  L  N  F  H  L  K  H  L  A  L   </second_frame>
            <third_frame>   K  R  D  F  H  K  K  E  I  P  N  P  L  P  F  F  L  F  K  A  K  S  H  H  I  *  R  K  L  I  K  E  S  E  K  S  N  T  K  I  P  K  I  S  S  I  P  *  F  F  L  Q  N  P  S  S  P  F  Q  I  F  L  I  L  K  P  *  F  I  N  S  P  *  I  L  H  I  E  F  Q  K  W  C  F  W  N  L  N  F  Q  D  L  E  E  Y  H  D  E  K  Y  M  V  V  G  E  K  P  *  F  P  T  T  L  F  E  L  L  *  D  S  I  K  I  D  W  F  S  C  E  W  N  R  R  K  *  L  H  L  G  K  F  R  I  K  K  R  K  T  *  R  A  Y  S  G  K  I  M  N  R  N  *  F  V  C  V  V  L  H  L  L  L  M  K  L  R  R  R  K  N  W  F  S  R  N  Y  S  H  L  Y  R :   *  K  Q  S  H  *  V  V  *  M  S  L  M  R  *  K  K  N  W  I  L  E  N  *  *  W  E  T  C  Q  C  I  L  K  L  S  K  R  K  S  R  S  K  R  S  N  L  V  M  T  S  G  H  F  W  L  Q  G  L  L  F  L  Q  L  A  S  A  C  R :   M  K  V  G  P  *  L  E  K  G  V  M  G  N  S  E  P  C  R  E  Y  S  E  R  D  N  S  I  W  C  L  K  F  T  C  F  I  L  *  G  L  Q  L  D  R  H  L  S  K  N  L  N  F  S  T  I  V  P  A  Q  :  V  T  L  L  G  Q  N  L  *  I  T  D  P  *  P  L  R  V  Y  I  *  P  C  S  L  R  *  V  S  L  L  I  R  R  R  F  R   : G  G  H  T  Y  C  I  L  F  T  S  S  S  S  L  S  L  E  V  W  R  I  S  I  I  Y  P  *  L  C  S  F  S  R  A  I  I  I  *  F  N  I  *  F  R  S  F  H  K  F  T  T  R  G  I  S  S  I  F  R  R  P  R  L  N  K  S  G  V  C  C  F  L  A  E  *   : G  Y  R  T  T  S  *  L  Y  W  R  Q  K  Y  R  A  K  T  C  T  S  *  F  E  R  A  S  *  N  N  T  F  S  R  V  Y  R  H  I  I  M  R  F  M  *  M  *  I  I  V  I  F  L  Y  R  C  *  I  F  T  *  S  T  L  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62610" stop="62792"/>
                    <exon start="63386" stop="63592"/>
                    <exon start="64959" stop="65139"/>
                    <exon start="66198" stop="66309"/>
                    <exon start="66895" stop="66946"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEPKKVASSGEIQNKKEKNLKSIQWEDYEQELVRLCSLTSALNEAKEKKELVQQKLQSFIQVEAESLSRLNELDEMKEKLDSRKLVMGNMSMHSKVVKEKVKKQEEQLSNDIRSLLVAGTSLSAASKRLQDESRSLAGERGYGQLRTLQRVFRTRQQYMVSQVHMLYPVRVAIGQAPEQELEFFNNSSSSGDSAGSKPLDHGSLTIAGLHLTVFTKMSFFTDKKEVQRWSHLLHLIYKFLFVIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="79755" PGL_stop="80589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79755" e_stop="80589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="79755" e_stop="80589" e_length="835"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79755" stop="80589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTGAGAAAACATTTGCTGCTGAGTTAGTGGCAGTTGCTCATCTCCGCCATCGGAATCTTGTGAGGCTAAGGGGATGGTGTTTTCATGATGATCAGTTGTTCCTTGTGTATGATTATATGCCTAACAGTAGCCTTGATCGGATTTTGTTCCGTAAACAGGACAATGCAGGGTCCCCTGTTCTTGATTGGGAACGTCGAAAGAATATAGTTAATGGCTTGTCAGCTGCCTTGTTTTATCTCCATGAACAATTGGAGACTCAGATCATTCATAGAGATGTTAAGACAAGCAATGTGATGCTTGATTACAATTTCAACGCCCGGCTAGGCGATTTTGGTTTAGCTAGGTGGTTGGAACATGAACTCGAGTACCAACCCAGGACACCTTCTATGAAGAATCAGCAGTTTAGGCTGGCTGAGACAACAAGAATTGGTGGAACTATAGGGTACTTACCTCCTGAAAGTTTTCAGAAAAAAGGTTGTGCCACTGCAAAATCTGATGTGTTTAGCTTTGGGATTGTTGTACTGGAGATTGTTTCAGGAAGGCGCGCTGTTGATCTCGCGTCCCCGGATGATCAAATCATACTTCTTGATTGGATCAGGAGACTTTCTGATGAAAAAATGGCTTTACAAGCTGGTGACAGCAGACTTGTTGATGGTTCTTACAAGCTTAATGATATGGAGAGGCTAATACATATTGGCCTTCTTTGTACACTTCATGAACCTCAATCAAGGCCTAATATGAAATGGGTTGTGGAAGCACTATCTGGTCATATTTATGGTAAATTACCTGATCTTCCTTGTTTTAAGTCCCATCCTCTTTATATATCTTTGTC</gDNA_template>
            <first_frame> N  L  R  K  H  L  L  L  S  *  W  Q  L  L  I  S  A  I  G  I  L  *  G  *  G  D  G  V  F  M  M  I  S  C  S  L  C  M  I  I  C  L  T  V  A  L  I  G  F  C  S  V  N  R  T  M  Q  G  P  L  F  L  I  G  N  V  E  R  I  *  L  M  A  C  Q  L  P  C  F  I  S  M  N  N  W  R  L  R  S  F  I  E  M  L  R  Q  A  M  *  C  L  I  T  I  S  T  P  G  *  A  I  L  V  *  L  G  G  W  N  M  N  S  S  T  N  P  G  H  L  L  *  R  I  S  S  L  G  W  L  R  Q  Q  E  L  V  E  L  *  G  T  Y  L  L  K  V  F  R  K  K  V  V  P  L  Q  N  L  M  C  L  A  L  G  L  L  Y  W  R  L  F  Q  E  G  A  L  L  I  S  R  P  R  M  I  K  S  Y  F  L  I  G  S  G  D  F  L  M  K  K  W  L  Y  K  L  V  T  A  D  L  L  M  V  L  T  S  L  M  I  W  R  G  *  Y  I  L  A  F  F  V  H  F  M  N  L  N  Q  G  L  I  *  N  G  L  W  K  H  Y  L  V  I  F  M  V  N  Y  L  I  F  L  V  L  S  P  I  L  F  I  Y  L  C  </first_frame>
            <second_frame>  I  *  E  N  I  C  C  *  V  S  G  S  C  S  S  P  P  S  E  S  C  E  A  K  G  M  V  F  S  *  *  S  V  V  P  C  V  *  L  Y  A  *  Q  *  P  *  S  D  F  V  P  *  T  G  Q  C  R  V  P  C  S  *  L  G  T  S  K  E  Y  S  *  W  L  V  S  C  L  V  L  S  P  *  T  I  G  D  S  D  H  S  *  R  C  *  D  K  Q  C  D  A  *  L  Q  F  Q  R  P  A  R  R  F  W  F  S  *  V  V  G  T  *  T  R  V  P  T  Q  D  T  F  Y  E  E  S  A  V  *  A  G  *  D  N  K  N  W  W  N  Y  R  V  L  T  S  *  K  F  S  E  K  R  L  C  H  C  K  I  *  C  V  *  L  W  D  C  C  T  G  D  C  F  R  K  A  R  C  *  S  R  V  P  G  *  S  N  H  T  S  *  L  D  Q  E  T  F  *  *  K  N  G  F  T  S  W  *  Q  Q  T  C  *  W  F  L  Q  A  *  *  Y  G  E  A  N  T  Y  W  P  S  L  Y  T  S  *  T  S  I  K  A  *  Y  E  M  G  C  G  S  T  I  W  S  Y  L  W  *  I  T  *  S  S  L  F  *  V  P  S  S  L  Y  I  F  V </second_frame>
            <third_frame>   F  E  K  T  F  A  A  E  L  V  A  V  A  H  L  R  H  R  N  L  V  R  L  R  G  W  C  F  H  D  D  Q  L  F  L  V  Y  D  Y  M  P  N  S  S  L  D  R  I  L  F  R  K  Q  D  N  A  G  S  P  V  L  D  W  E  R  R  K  N  I  V  N  G  L  S  A  A  L  F  Y  L  H  E  Q  L  E  T  Q  I  I  H  R  D  V  K  T  S  N  V  M  L  D  Y  N  F  N  A  R  L  G  D  F  G  L  A  R  W  L  E  H  E  L  E  Y  Q  P  R  T  P  S  M  K  N  Q  Q  F  R  L  A  E  T  T  R  I  G  G  T  I  G  Y  L  P  P  E  S  F  Q  K  K  G  C  A  T  A  K  S  D  V  F  S  F  G  I  V  V  L  E  I  V  S  G  R  R  A  V  D  L  A  S  P  D  D  Q  I  I  L  L  D  W  I  R  R  L  S  D  E  K  M  A  L  Q  A  G  D  S  R  L  V  D  G  S  Y  K  L  N  D  M  E  R  L  I  H  I  G  L  L  C  T  L  H  E  P  Q  S  R  P  N  M  K  W  V  V  E  A  L  S  G  H  I  Y  G  K  L  P  D  L  P  C  F  K  S  H  P  L  Y  I  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79757" stop="80587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEKTFAAELVAVAHLRHRNLVRLRGWCFHDDQLFLVYDYMPNSSLDRILFRKQDNAGSPVLDWERRKNIVNGLSAALFYLHEQLETQIIHRDVKTSNVMLDYNFNARLGDFGLARWLEHELEYQPRTPSMKNQQFRLAETTRIGGTIGYLPPESFQKKGCATAKSDVFSFGIVVLEIVSGRRAVDLASPDDQIILLDWIRRLSDEKMALQAGDSRLVDGSYKLNDMERLIHIGLLCTLHEPQSRPNMKWVVEALSGHIYGKLPDLPCFKSHPLYISL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="80628" PGL_stop="82036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80628" e_stop="81643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="80628" e_stop="81643" e_length="1016"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80628" stop="81643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGGTCCACTGCCACAACCAGCACGAGCACGACGCCTGGTTTCAACTCAACAATGTTCATCACAGCCACAGGAGATACCATGTATCTAAGTGCTGAAAGTGGAAGCACCAGCAGCAATAATGAGTCTGGAAATTGCAGCAGTAGGCGTCAATCGAGTAATTTCCTGATGGTTGAAACTGCTAGGGAGATCACATTCAAAGAGATCATTGCTGCCACGAACAATTTTTCGGATTCAAGAAGAGTTGCTGAGATTGACTTTGGTACTGCTTACCATGGTTTTCTTGAAAACAACCAGCATGTCTTAGTGAAAAGGCTAGGAATGAAAACTTGTCCAGCTTTAAGAGTGAGGTTCTCGAATGAACTTCAGAACTTAGGACGATTACGCCACAGAAACCTGGTGCAACTCCGCGGATGGTGCACCGAGCAAGGTGAAATGCTTGTCATTTATGATTACTCTCAGAGTAGCCTTTTAAGTCACCTCCTTTTCCATCAGAATCATCATAGGGACAATGCCTCCAGTACTCTTAGATGGCGTCATCGGTATAACATTGTCAAATCACTTGCCTCTGCGATTCGCTATCTACATGAGGAATGGGATGAACAGGTGATACACAGATGCATCACATCATCTGCCATCATTCTTGATCCAGATATGAACCCAAGGCTTGGTTGCTTTGCTCTTGCTGAATTCTTGACTCGAAATGAGCATAGCCATCATGTTGTGGTTGATAAAAACAAATCAGTCAGGGGGATCTTTGGATACATGTCACCGGAGCATATGGATTCTGGTGATGCAACAACAATGGCTGATGTTTATAGCTTTGGTGTAGTTCTGCTTGAGATAGTTAGTGGTCAGATGGCAGTAGATTTCCGCCGGCCTGAGGCTTTGTTGGTTAATCGAGTTCATGAATTCGAGGTGCAAAAAAGGCCATACGAACAACTTGCAGATTGGAGGTTGAATGGAAACTTCAACACCAGGGAACTGATCAGGCTAGTCAAATTAGGAATGGCTTGC</gDNA_template>
            <first_frame> L  G  P  L  P  Q  P  A  R  A  R  R  L  V  S  T  Q  Q  C  S  S  Q  P  Q  E  I  P  C  I  *  V  L  K  V  E  A  P  A  A  I  M  S  L  E  I  A  A  V  G  V  N  R  V  I  S  *  W  L  K  L  L  G  R  S  H  S  K  R  S  L  L  P  R  T  I  F  R  I  Q  E  E  L  L  R  L  T  L  V  L  L  T  M  V  F  L  K  T  T  S  M  S  *  *  K  G  *  E  *  K  L  V  Q  L  *  E  *  G  S  R  M  N  F  R  T  *  D  D  Y  A  T  E  T  W  C  N  S  A  D  G  A  P  S  K  V  K  C  L  S  F  M  I  T  L  R  V  A  F  *  V  T  S  F  S  I  R  I  I  I  G  T  M  P  P  V  L  L  D  G  V  I  G  I  T  L  S  N  H  L  P  L  R  F  A  I  Y  M  R  N  G  M  N  R  *  Y  T  D  A  S  H  H  L  P  S  F  L  I  Q  I  *  T  Q  G  L  V  A  L  L  L  L  N  S  *  L  E  M  S  I  A  I  M  L  W  L  I  K  T  N  Q  S  G  G  S  L  D  T  C  H  R  S  I  W  I  L  V  M  Q  Q  Q  W  L  M  F  I  A  L  V  *  F  C  L  R  *  L  V  V  R  W  Q  *  I  S  A  G  L  R  L  C  W  L  I  E  F  M  N  S  R  C  K  K  G  H  T  N  N  L  Q  I  G  G  *  M  E  T  S  T  P  G  N  *  S  G  *  S  N  *  E  W  L   </first_frame>
            <second_frame>  *  V  H  C  H  N  Q  H  E  H  D  A  W  F  Q  L  N  N  V  H  H  S  H  R  R  Y  H  V  S  K  C  *  K  W  K  H  Q  Q  Q  *  *  V  W  K  L  Q  Q  *  A  S  I  E  *  F  P  D  G  *  N  C  *  G  D  H  I  Q  R  D  H  C  C  H  E  Q  F  F  G  F  K  K  S  C  *  D  *  L  W  Y  C  L  P  W  F  S  *  K  Q  P  A  C  L  S  E  K  A  R  N  E  N  L  S  S  F  K  S  E  V  L  E  *  T  S  E  L  R  T  I  T  P  Q  K  P  G  A  T  P  R  M  V  H  R  A  R  *  N  A  C  H  L  *  L  L  S  E  *  P  F  K  S  P  P  F  P  S  E  S  S  *  G  Q  C  L  Q  Y  S  *  M  A  S  S  V  *  H  C  Q  I  T  C  L  C  D  S  L  S  T  *  G  M  G  *  T  G  D  T  Q  M  H  H  I  I  C  H  H  S  *  S  R  Y  E  P  K  A  W  L  L  C  S  C  *  I  L  D  S  K  *  A  *  P  S  C  C  G  *  *  K  Q  I  S  Q  G  D  L  W  I  H  V  T  G  A  Y  G  F  W  *  C  N  N  N  G  *  C  L  *  L  W  C  S  S  A  *  D  S  *  W  S  D  G  S  R  F  P  P  A  *  G  F  V  G  *  S  S  S  *  I  R  G  A  K  K  A  I  R  T  T  C  R  L  E  V  E  W  K  L  Q  H  Q  G  T  D  Q  A  S  Q  I  R  N  G  L  </second_frame>
            <third_frame>   R  S  T  A  T  T  S  T  S  T  T  P  G  F  N  S  T  M  F  I  T  A  T  G  D  T  M  Y  L  S  A  E  S  G  S  T  S  S  N  N  E  S  G  N  C  S  S  R  R  Q  S  S  N  F  L  M  V  E  T  A  R  E  I  T  F  K  E  I  I  A  A  T  N  N  F  S  D  S  R  R  V  A  E  I  D  F  G  T  A  Y  H  G  F  L  E  N  N  Q  H  V  L  V  K  R  L  G  M  K  T  C  P  A  L  R  V  R  F  S  N  E  L  Q  N  L  G  R  L  R  H  R  N  L  V  Q  L  R  G  W  C  T  E  Q  G  E  M  L  V  I  Y  D  Y  S  Q  S  S  L  L  S  H  L  L  F  H  Q  N  H  H  R  D  N  A  S  S  T  L  R  W  R  H  R  Y  N  I  V  K  S  L  A  S  A  I  R  Y  L  H  E  E  W  D  E  Q  V  I  H  R  C  I  T  S  S  A  I  I  L  D  P  D  M  N  P  R  L  G  C  F  A  L  A  E  F  L  T  R  N  E  H  S  H  H  V  V  V  D  K  N  K  S  V  R  G  I  F  G  Y  M  S  P  E  H  M  D  S  G  D  A  T  T  M  A  D  V  Y  S  F  G  V  V  L  L  E  I  V  S  G  Q  M  A  V  D  F  R  R  P  E  A  L  L  V  N  R  V  H  E  F  E  V  Q  K  R  P  Y  E  Q  L  A  D  W  R  L  N  G  N  F  N  T  R  E  L  I  R  L  V  K  L  G  M  A  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80630" stop="81643"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSTATTSTSTTPGFNSTMFITATGDTMYLSAESGSTSSNNESGNCSSRRQSSNFLMVETAREITFKEIIAATNNFSDSRRVAEIDFGTAYHGFLENNQHVLVKRLGMKTCPALRVRFSNELQNLGRLRHRNLVQLRGWCTEQGEMLVIYDYSQSSLLSHLLFHQNHHRDNASSTLRWRHRYNIVKSLASAIRYLHEEWDEQVIHRCITSSAIILDPDMNPRLGCFALAEFLTRNEHSHHVVVDKNKSVRGIFGYMSPEHMDSGDATTMADVYSFGVVLLEIVSGQMAVDFRRPEALLVNRVHEFEVQKRPYEQLADWRLNGNFNTRELIRLVKLGMAC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81219" e_stop="81346"/>
            <exon e_start="81440" e_stop="82036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81219" e_stop="81346" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81347" i_stop="81439" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="81440" e_stop="82036" e_length="597"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81219" stop="81346"/>
              <exon start="81440" stop="82036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337699" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATGGGATGAACAGGTGATACACAGATGCATCACATCATCTGCCATCATTCTTGATCCAGATATGAACCCAAGGCTTGGTTGCTTTGCTCTTGCTGAATTCTTGACTCGAAATGAGCATAGCCATCAT : GTTTATAGCTTTGGTGTAGTTCTGCTTGAGATAGTTAGTGGTCAGATGGCAGTAGATTTCCGCCGGCCTGAGGCTTTGTTGGTTAATCGAGTTCATGAATTCGAGGTGCAAAAAAGGCCATACGAACAACTTGCAGATTGGAGGTTGAATGGAAACTTCAACACCAGGGAACTGATCAGGCTAGTCAAATTAGGAATGGCTTGCACTAGATACGATCCTGAATCAAGACCGAGCATGAGGCAGATAGTGAACATTCTCGATGGACATGATCAATGGTTAATGGAAAATGGACGAAAGAAGGAGAGCCCGGAAGAATGGAGAACAAGAAATGCTTCTGCTTTGTCCCTCGTAAGGAGAATCCAAGCTCTTGGTATACAATGATCATCGCGTAAGATGTGAAGTAGTTACATGTAGATAGAAATGAAAATGAAGCTTTATATCTCAATGTGTTTGTTCTTCTATGTATTCATGGTATGACTATGTTTCTTCAGCAGAACATTTGTGTAATTTAGTGTGGGCAACTTTGATAGCATCAGATATGCGATTTTTTATGAAATTGATGAGTTTTTTTTCGATACAATAGAAGAATATACCTTA</gDNA_template>
            <first_frame> N  G  M  N  R  *  Y  T  D  A  S  H  H  L  P  S  F  L  I  Q  I  *  T  Q  G  L  V  A  L  L  L  L  N  S  *  L  E  M  S  I  A  I  M :   F  I  A  L  V  *  F  C  L  R  *  L  V  V  R  W  Q  *  I  S  A  G  L  R  L  C  W  L  I  E  F  M  N  S  R  C  K  K  G  H  T  N  N  L  Q  I  G  G  *  M  E  T  S  T  P  G  N  *  S  G  *  S  N  *  E  W  L  A  L  D  T  I  L  N  Q  D  R  A  *  G  R  *  *  T  F  S  M  D  M  I  N  G  *  W  K  M  D  E  R  R  R  A  R  K  N  G  E  Q  E  M  L  L  L  C  P  S  *  G  E  S  K  L  L  V  Y  N  D  H  R  V  R  C  E  V  V  T  C  R  *  K  *  K  *  S  F  I  S  Q  C  V  C  S  S  M  Y  S  W  Y  D  Y  V  S  S  A  E  H  L  C  N  L  V  W  A  T  L  I  A  S  D  M  R  F  F  M  K  L  M  S  F  F  S  I  Q  *  K  N  I  P   </first_frame>
            <second_frame>  M  G  *  T  G  D  T  Q  M  H  H  I  I  C  H  H  S  *  S  R  Y  E  P  K  A  W  L  L  C  S  C  *  I  L  D  S  K  *  A  *  P  S   : C  L  *  L  W  C  S  S  A  *  D  S  *  W  S  D  G  S  R  F  P  P  A  *  G  F  V  G  *  S  S  S  *  I  R  G  A  K  K  A  I  R  T  T  C  R  L  E  V  E  W  K  L  Q  H  Q  G  T  D  Q  A  S  Q  I  R  N  G  L  H  *  I  R  S  *  I  K  T  E  H  E  A  D  S  E  H  S  R  W  T  *  S  M  V  N  G  K  W  T  K  E  G  E  P  G  R  M  E  N  K  K  C  F  C  F  V  P  R  K  E  N  P  S  S  W  Y  T  M  I  I  A  *  D  V  K  *  L  H  V  D  R  N  E  N  E  A  L  Y  L  N  V  F  V  L  L  C  I  H  G  M  T  M  F  L  Q  Q  N  I  C  V  I  *  C  G  Q  L  *  *  H  Q  I  C  D  F  L  *  N  *  *  V  F  F  R  Y  N  R  R  I  Y  L  </second_frame>
            <third_frame>   W  D  E  Q  V  I  H  R  C  I  T  S  S  A  I  I  L  D  P  D  M  N  P  R  L  G  C  F  A  L  A  E  F  L  T  R  N  E  H  S  H  H  :  V  Y  S  F  G  V  V  L  L  E  I  V  S  G  Q  M  A  V  D  F  R  R  P  E  A  L  L  V  N  R  V  H  E  F  E  V  Q  K  R  P  Y  E  Q  L  A  D  W  R  L  N  G  N  F  N  T  R  E  L  I  R  L  V  K  L  G  M  A  C  T  R  Y  D  P  E  S  R  P  S  M  R  Q  I  V  N  I  L  D  G  H  D  Q  W  L  M  E  N  G  R  K  K  E  S  P  E  E  W  R  T  R  N  A  S  A  L  S  L  V  R  R  I  Q  A  L  G  I  Q  *  S  S  R  K  M  *  S  S  Y  M  *  I  E  M  K  M  K  L  Y  I  S  M  C  L  F  F  Y  V  F  M  V  *  L  C  F  F  S  R  T  F  V  *  F  S  V  G  N  F  D  S  I  R  Y  A  I  F  Y  E  I  D  E  F  F  F  D  T  I  E  E  Y  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81221" stop="81346"/>
                    <exon start="81440" stop="81820"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDEQVIHRCITSSAIILDPDMNPRLGCFALAEFLTRNEHSHHVYSFGVVLLEIVSGQMAVDFRRPEALLVNRVHEFEVQKRPYEQLADWRLNGNFNTRELIRLVKLGMACTRYDPESRPSMRQIVNILDGHDQWLMENGRKKESPEEWRTRNASALSLVRRIQALGIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="92995" PGL_stop="92539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92995" e_stop="92891"/>
            <exon e_start="92763" e_stop="92539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.990"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="92995" e_stop="92891" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="92890" i_stop="92764" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="92763" e_stop="92539" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92995" stop="92891"/>
              <exon start="92763" stop="92539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGCGGAAATCAGAGGGAAAAGGATCGGGAAAGAGCTGCAGCTCGTGCTGGTAAAAGCAAGAAGGGAGCTGATGATGGTTTGACTCCTGAGCAGCGCCGTGAAAG : GGATGCGAAAGCTCTGCAAGAGAAGGCTGCAAAGAAAGCAGCAAAAGAGGCCGCCGGAGGTAGCAATGCTGGAACTAAGGATACCAAGAAATAGAAAGCTAGGTGTTGTGTACTTCATTGCAGTCAGTAATTTGTCATTCCCCTTTGTTTGTCATGTTATTCACTGTTTAAATGTTGTGATGCACTACAACTTAATACGTCTGAATTGTCAATCCATTCGGTTTT</gDNA_template>
            <first_frame> T  R  K  S  E  G  K  G  S  G  K  S  C  S  S  C  W  *  K  Q  E  G  S  *  *  W  F  D  S  *  A  A  P  *  K  :  G  C  E  S  S  A  R  E  G  C  K  E  S  S  K  R  G  R  R  R  *  Q  C  W  N  *  G  Y  Q  E  I  E  S  *  V  L  C  T  S  L  Q  S  V  I  C  H  S  P  L  F  V  M  L  F  T  V  *  M  L  *  C  T  T  T  *  Y  V  *  I  V  N  P  F  G  F </first_frame>
            <second_frame>  R  G  N  Q  R  E  K  D  R  E  R  A  A  A  R  A  G  K  S  K  K  G  A  D  D  G  L  T  P  E  Q  R  R  E  R :   D  A  K  A  L  Q  E  K  A  A  K  K  A  A  K  E  A  A  G  G  S  N  A  G  T  K  D  T  K  K  *  K  A  R  C  C  V  L  H  C  S  Q  *  F  V  I  P  L  C  L  S  C  Y  S  L  F  K  C  C  D  A  L  Q  L  N  T  S  E  L  S  I  H  S  V   </second_frame>
            <third_frame>   A  E  I  R  G  K  R  I  G  K  E  L  Q  L  V  L  V  K  A  R  R  E  L  M  M  V  *  L  L  S  S  A  V  K   : G  M  R  K  L  C  K  R  R  L  Q  R  K  Q  Q  K  R  P  P  E  V  A  M  L  E  L  R  I  P  R  N  R  K  L  G  V  V  Y  F  I  A  V  S  N  L  S  F  P  F  V  C  H  V  I  H  C  L  N  V  V  M  H  Y  N  L  I  R  L  N  C  Q  S  I  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92912" stop="92891"/>
                    <exon start="92763" stop="92540"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSSAVKGMRKLCKRRLQRKQQKRPPEVAMLELRIPRNRKLGVVYFIAVSNLSFPFVCHVIHCLNVVMHYNLIRLNCQSIRF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92994" stop="92891"/>
                    <exon start="92763" stop="92670"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGNQREKDRERAAARAGKSKKGADDGLTPEQRRERDAKALQEKAAKKAAKEAAGGSNAGTKDTKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="94693" PGL_stop="95930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94693" e_stop="95175"/>
            <exon e_start="95548" e_stop="95930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94693" e_stop="95175" e_length="483"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95176" i_stop="95547" i_length="372"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="95548" e_stop="95930" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94693" stop="95175"/>
              <exon start="95548" stop="95930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTCCCCTCAATACCAATCTATTGGATTTCTCATGGAGAATCAGTCTCTAAAATCAGAATCCATCATGCAAAAAGAATTGCCAACTTGTTATAAACAAGTAGCCATAGAATCATTATCTAGATTTTTCAAGGATCCACACATTTTTAGTGATTTAAATCATGAAATTACTTTTATAAATTCTTCTCCAACAAAATTTTCTGAATTTCTTCCACTTAATTTCCATCAAAATGAATCGTCATTATCATTATCATCATCATCATCATCATTATCGACTTCTTCAAGTTATCAACATCATCAAGATCAAGGGAATAATAACAACATTTTTCCTTTAAATAATTTTCTTGATCATCAAACATGTGCTTCTTCAACAAATTCACTATCAAGTAATTACCCAACTTTAGGGTTATTTTTGCAAGAGCCTTCCATTTTAGAGATTTCAAAAAGGGCAGCTGAATCTCTAAGCAACAAGAATCACAA : GTCATCATCCGCGGCGTTATTCCCTATGTCTTCATCAATAGGTCATGAGAGCCAAATTCATTATAAAGAGGTTGCAACTACAAATCCAACAAATTGGTTGAAAATGAATCAAACCATAACAAATTGTACCACAACAAAAGGTTTTAGTGACTATTGGCTCAGCACTACAAAAACTCAACCAATGAAATTCAAAGGATCATCAAGAAAATCATCACTTGTTCATTATGAAAAGTCATCGTCGTCGTCATCATCATCATCTTCTTCTTCTTCTATGATCGCTTCCCAAGGGAAGCTTTTTCGAGGAGTAAGACAAAGGCATTGGGGAAAATGGGTGGCGGAAATAAGGCTACCAAGAAATAGGACTAGGGTTTGGCTAGGGACAT</gDNA_template>
            <first_frame> F  F  F  P  S  I  P  I  Y  W  I  S  H  G  E  S  V  S  K  I  R  I  H  H  A  K  R  I  A  N  L  L  *  T  S  S  H  R  I  I  I  *  I  F  Q  G  S  T  H  F  *  *  F  K  S  *  N  Y  F  Y  K  F  F  S  N  K  I  F  *  I  S  S  T  *  F  P  S  K  *  I  V  I  I  I  I  I  I  I  I  I  I  I  D  F  F  K  L  S  T  S  S  R  S  R  E  *  *  Q  H  F  S  F  K  *  F  S  *  S  S  N  M  C  F  F  N  K  F  T  I  K  *  L  P  N  F  R  V  I  F  A  R  A  F  H  F  R  D  F  K  K  G  S  *  I  S  K  Q  Q  E  S  Q  :  V  I  I  R  G  V  I  P  Y  V  F  I  N  R  S  *  E  P  N  S  L  *  R  G  C  N  Y  K  S  N  K  L  V  E  N  E  S  N  H  N  K  L  Y  H  N  K  R  F  *  *  L  L  A  Q  H  Y  K  N  S  T  N  E  I  Q  R  I  I  K  K  I  I  T  C  S  L  *  K  V  I  V  V  V  I  I  I  I  F  F  F  F  Y  D  R  F  P  R  E  A  F  S  R  S  K  T  K  A  L  G  K  M  G  G  G  N  K  A  T  K  K  *  D  *  G  L  A  R  D   </first_frame>
            <second_frame>  F  F  S  P  Q  Y  Q  S  I  G  F  L  M  E  N  Q  S  L  K  S  E  S  I  M  Q  K  E  L  P  T  C  Y  K  Q  V  A  I  E  S  L  S  R  F  F  K  D  P  H  I  F  S  D  L  N  H  E  I  T  F  I  N  S  S  P  T  K  F  S  E  F  L  P  L  N  F  H  Q  N  E  S  S  L  S  L  S  S  S  S  S  S  L  S  T  S  S  S  Y  Q  H  H  Q  D  Q  G  N  N  N  N  I  F  P  L  N  N  F  L  D  H  Q  T  C  A  S  S  T  N  S  L  S  S  N  Y  P  T  L  G  L  F  L  Q  E  P  S  I  L  E  I  S  K  R  A  A  E  S  L  S  N  K  N  H  K :   S  S  S  A  A  L  F  P  M  S  S  S  I  G  H  E  S  Q  I  H  Y  K  E  V  A  T  T  N  P  T  N  W  L  K  M  N  Q  T  I  T  N  C  T  T  T  K  G  F  S  D  Y  W  L  S  T  T  K  T  Q  P  M  K  F  K  G  S  S  R  K  S  S  L  V  H  Y  E  K  S  S  S  S  S  S  S  S  S  S  S  S  S  M  I  A  S  Q  G  K  L  F  R  G  V  R  Q  R  H  W  G  K  W  V  A  E  I  R  L  P  R  N  R  T  R  V  W  L  G  T  </second_frame>
            <third_frame>   F  F  P  L  N  T  N  L  L  D  F  S  W  R  I  S  L  *  N  Q  N  P  S  C  K  K  N  C  Q  L  V  I  N  K  *  P  *  N  H  Y  L  D  F  S  R  I  H  T  F  L  V  I  *  I  M  K  L  L  L  *  I  L  L  Q  Q  N  F  L  N  F  F  H  L  I  S  I  K  M  N  R  H  Y  H  Y  H  H  H  H  H  H  Y  R  L  L  Q  V  I  N  I  I  K  I  K  G  I  I  T  T  F  F  L  *  I  I  F  L  I  I  K  H  V  L  L  Q  Q  I  H  Y  Q  V  I  T  Q  L  *  G  Y  F  C  K  S  L  P  F  *  R  F  Q  K  G  Q  L  N  L  *  A  T  R  I  T   : S  H  H  P  R  R  Y  S  L  C  L  H  Q  *  V  M  R  A  K  F  I  I  K  R  L  Q  L  Q  I  Q  Q  I  G  *  K  *  I  K  P  *  Q  I  V  P  Q  Q  K  V  L  V  T  I  G  S  A  L  Q  K  L  N  Q  *  N  S  K  D  H  Q  E  N  H  H  L  F  I  M  K  S  H  R  R  R  H  H  H  H  L  L  L  L  L  *  S  L  P  K  G  S  F  F  E  E  *  D  K  G  I  G  E  N  G  W  R  K  *  G  Y  Q  E  I  G  L  G  F  G  *  G  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94694" stop="95175"/>
                    <exon start="95548" stop="95929"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSPQYQSIGFLMENQSLKSESIMQKELPTCYKQVAIESLSRFFKDPHIFSDLNHEITFINSSPTKFSEFLPLNFHQNESSLSLSSSSSSLSTSSSYQHHQDQGNNNNIFPLNNFLDHQTCASSTNSLSSNYPTLGLFLQEPSILEISKRAAESLSNKNHKSSSAALFPMSSSIGHESQIHYKEVATTNPTNWLKMNQTITNCTTTKGFSDYWLSTTKTQPMKFKGSSRKSSLVHYEKSSSSSSSSSSSSSMIASQGKLFRGVRQRHWGKWVAEIRLPRNRTRVWLGT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="110018" PGL_stop="105638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110018" e_stop="109933"/>
            <exon e_start="109843" e_stop="109775"/>
            <exon e_start="108926" e_stop="108851"/>
            <exon e_start="108244" e_stop="108185"/>
            <exon e_start="108057" e_stop="107939"/>
            <exon e_start="107818" e_stop="107774"/>
            <exon e_start="107678" e_stop="107600"/>
            <exon e_start="107453" e_stop="107392"/>
            <exon e_start="107306" e_stop="107204"/>
            <exon e_start="107006" e_stop="106946"/>
            <exon e_start="106591" e_stop="106521"/>
            <exon e_start="106418" e_stop="106279"/>
            <exon e_start="106125" e_stop="105743"/>
            <exon e_start="105665" e_stop="105638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="0.965"/>
          <exon-intron don_prob="0.999" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.645" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.126" acc_prob="0.776" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.937" e_score="0.967"/>
          <exon-intron don_prob="0.904" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.964" e_score="1.000"/>
          <exon-only e_score="0.536"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="110018" e_stop="109933" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="109932" i_stop="109844" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109843" e_stop="109775" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.760">
            <gDNA_intron_boundary i_start="109774" i_stop="108927" i_length="848"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108926" e_stop="108851" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="108850" i_stop="108245" i_length="606"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108244" e_stop="108185" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="108184" i_stop="108058" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="108057" e_stop="107939" e_length="119"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.645">
            <gDNA_intron_boundary i_start="107938" i_stop="107819" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107818" e_stop="107774" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="107773" i_stop="107679" i_length="95"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107678" e_stop="107600" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.126" acc_prob="0.776">
            <gDNA_intron_boundary i_start="107599" i_stop="107454" i_length="146"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="107453" e_stop="107392" e_length="62"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="107391" i_stop="107307" i_length="85"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="107306" e_stop="107204" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="107203" i_stop="107007" i_length="197"/>
          </intron>
          <exon e_serial="10" e_score="0.967">
            <gDNA_exon_boundary e_start="107006" e_stop="106946" e_length="61"/>
          </exon>
          <intron i_serial="10" don_prob="0.975" acc_prob="0.937">
            <gDNA_intron_boundary i_start="106945" i_stop="106592" i_length="354"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="106591" e_stop="106521" e_length="71"/>
          </exon>
          <intron i_serial="11" don_prob="0.904" acc_prob="0.958">
            <gDNA_intron_boundary i_start="106520" i_stop="106419" i_length="102"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="106418" e_stop="106279" e_length="140"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.948">
            <gDNA_intron_boundary i_start="106278" i_stop="106126" i_length="153"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="106125" e_stop="105743" e_length="383"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="105742" i_stop="105666" i_length="77"/>
          </intron>
          <exon e_serial="14" e_score="0.536">
            <gDNA_exon_boundary e_start="105665" e_stop="105638" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110018" stop="109933"/>
              <exon start="109843" stop="109775"/>
              <exon start="108926" stop="108851"/>
              <exon start="108244" stop="108185"/>
              <exon start="108057" stop="107939"/>
              <exon start="107818" stop="107774"/>
              <exon start="107678" stop="107600"/>
              <exon start="107453" stop="107392"/>
              <exon start="107306" stop="107204"/>
              <exon start="107006" stop="106946"/>
              <exon start="106591" stop="106521"/>
              <exon start="106418" stop="106279"/>
              <exon start="106125" stop="105743"/>
              <exon start="105665" stop="105638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323152" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTACCATGGGAATAGCAAGTACATTTTCATGGACAAATTCCATTTCTTCTACTATTCAATTCCCTCAAGCTCACACTCAATTAATT : GGAGGTGAGTCTAAAAGAGTTACATTTTGGTGTGTGAATGCAAACATGGACTCTGCTTCATCTCCAAAG : GAAAGTAAGATGATTGTATCAGTTACTGGAGCTACTGGTTTTGTTGGGAAAAGATTGGTGCAAAGATTGCATGCAG : ATAAGCATCAAATTCGAGTGTTGACAAGGTCAAGATCCACAGCACAATCAATATTTCCGG : TTAAAGAGTTCCCCGGAATAGTAATTGCCGAGGAGCCAGAGTGGAAAAACTGCATAGAAGGTTCAACAGCTGTTGTGAATTTGGCTGGAACATCCATTAGTACTAGATGGTCCTATGAG : ATCAAGAAGGATATCAAGCAAAGCAGGATTAGAGTAACCTCCAAG : GTTGTAGAATTAATCAATAATTCAAAGGATGATGCCCGTCCCAAAGTTTTAATAAGTGCAACAGCAGTTGGTTATTATG : GAACCAGCGAGACGGAAGTGTTTGATGAGAAAAGTCCATCGGGAAATGATTACTTGGCTGAG : GTTTGTAGAGAATGGGAGGCATCTGCTCTCAAAGTCAATAAGGATGTTAGGCTTGCTCTAATTCGTATTGGCGTTGTCCTCGGAAAAGACGGTGGTGCTTTAG : CTAAGATGATTCCTCTCTTCATGATGTTTGCTGGTGGACCTTTGGGCTCTGGAAAGCAATG : GTTTTCTTGGATTCATCTCGATGACCTCGTGGATTTGATATACGAAGCTTTATCCAACCCATCCTATAAAG : GGGTGATAAATGGAACAGCACCGAATCCTGTACGTCTGGGAGAAATGTGTGAACAACTAGGATCGACGTTAGGAAGACCTTCGTGGCTACCTGTACCAGAAATTGCACTGAAAGCTGTACTTGGAGAGGGTGCATCAGTG : GTGTTGGACGGACAAAAGGTGGTTCCAACGAAGGCTAAGGAGTTGGGTTTTTCGTTCAAATACAGGTATATCAAAGACGCGTTGAAAGCAATCATGTCATGAGACTCATCAACCATCAACCCATATTCATTTTCAATGGCCATGAAATGGAACGAAAACACGAATAATTTGTTGTTGTTGTTGTAGTCGTCGTCGTCTGGGGATATGAGTTTTTTTCCTTATTTTTGATGAGCCAAAATTCAATTTATAAACATAATGTCATTGTCAAAAGTATATGCCTAGTTATGCTTTACTTGAACCGAGGGTCTCTCTTCCTAATACGGTAGCAGTAAGACGGTGTATATATCACTTGTGAGTATATTGTTATTGTATGGACGAACTTT : TCCAATTAGCAAACTAGACGTAACAAAT</gDNA_template>
            <first_frame> V  P  W  E  *  Q  V  H  F  H  G  Q  I  P  F  L  L  L  F  N  S  L  K  L  T  L  N  *  L :   E  V  S  L  K  E  L  H  F  G  V  *  M  Q  T  W  T  L  L  H  L  Q  R :   K  V  R  *  L  Y  Q  L  L  E  L  L  V  L  L  G  K  D  W  C  K  D  C  M  Q  :  I  S  I  K  F  E  C  *  Q  G  Q  D  P  Q  H  N  Q  Y  F  R  :  L  K  S  S  P  E  *  *  L  P  R  S  Q  S  G  K  T  A  *  K  V  Q  Q  L  L  *  I  W  L  E  H  P  L  V  L  D  G  P  M  R :   S  R  R  I  S  S  K  A  G  L  E  *  P  P  R :   L  *  N  *  S  I  I  Q  R  M  M  P  V  P  K  F  *  *  V  Q  Q  Q  L  V  I  M  :  E  P  A  R  R  K  C  L  M  R  K  V  H  R  E  M  I  T  W  L  R :   F  V  E  N  G  R  H  L  L  S  K  S  I  R  M  L  G  L  L  *  F  V  L  A  L  S  S  E  K  T  V  V  L  *  :  L  R  *  F  L  S  S  *  C  L  L  V  D  L  W  A  L  E  S  N   : G  F  L  G  F  I  S  M  T  S  W  I  *  Y  T  K  L  Y  P  T  H  P  I  K  :  G  *  *  M  E  Q  H  R  I  L  Y  V  W  E  K  C  V  N  N  *  D  R  R  *  E  D  L  R  G  Y  L  Y  Q  K  L  H  *  K  L  Y  L  E  R  V  H  Q  W :   C  W  T  D  K  R  W  F  Q  R  R  L  R  S  W  V  F  R  S  N  T  G  I  S  K  T  R  *  K  Q  S  C  H  E  T  H  Q  P  S  T  H  I  H  F  Q  W  P  *  N  G  T  K  T  R  I  I  C  C  C  C  C  S  R  R  R  L  G  I  *  V  F  F  L  I  F  D  E  P  K  F  N  L  *  T  *  C  H  C  Q  K  Y  M  P  S  Y  A  L  L  E  P  R  V  S  L  P  N  T  V  A  V  R  R  C  I  Y  H  L  *  V  Y  C  Y  C  M  D  E  L   : F  Q  L  A  N  *  T  *  Q   </first_frame>
            <second_frame>  Y  H  G  N  S  K  Y  I  F  M  D  K  F  H  F  F  Y  Y  S  I  P  S  S  S  H  S  I  N   : W  R  *  V  *  K  S  Y  I  L  V  C  E  C  K  H  G  L  C  F  I  S  K   : G  K  *  D  D  C  I  S  Y  W  S  Y  W  F  C  W  E  K  I  G  A  K  I  A  C  R :   *  A  S  N  S  S  V  D  K  V  K  I  H  S  T  I  N  I  S  G :   *  R  V  P  R  N  S  N  C  R  G  A  R  V  E  K  L  H  R  R  F  N  S  C  C  E  F  G  W  N  I  H  *  Y  *  M  V  L  *   : D  Q  E  G  Y  Q  A  K  Q  D  *  S  N  L  Q   : G  C  R  I  N  Q  *  F  K  G  *  C  P  S  Q  S  F  N  K  C  N  S  S  W  L  L  W :   N  Q  R  D  G  S  V  *  *  E  K  S  I  G  K  *  L  L  G  *   : G  L  *  R  M  G  G  I  C  S  Q  S  Q  *  G  C  *  A  C  S  N  S  Y  W  R  C  P  R  K  R  R  W  C  F  S :   *  D  D  S  S  L  H  D  V  C  W  W  T  F  G  L  W  K  A  M  :  V  F  L  D  S  S  R  *  P  R  G  F  D  I  R  S  F  I  Q  P  I  L  *  R :   G  D  K  W  N  S  T  E  S  C  T  S  G  R  N  V  *  T  T  R  I  D  V  R  K  T  F  V  A  T  C  T  R  N  C  T  E  S  C  T  W  R  G  C  I  S   : G  V  G  R  T  K  G  G  S  N  E  G  *  G  V  G  F  F  V  Q  I  Q  V  Y  Q  R  R  V  E  S  N  H  V  M  R  L  I  N  H  Q  P  I  F  I  F  N  G  H  E  M  E  R  K  H  E  *  F  V  V  V  V  V  V  V  V  V  W  G  Y  E  F  F  S  L  F  L  M  S  Q  N  S  I  Y  K  H  N  V  I  V  K  S  I  C  L  V  M  L  Y  L  N  R  G  S  L  F  L  I  R  *  Q  *  D  G  V  Y  I  T  C  E  Y  I  V  I  V  W  T  N  F  :  S  N  *  Q  T  R  R  N  K  </second_frame>
            <third_frame>   T  M  G  I  A  S  T  F  S  W  T  N  S  I  S  S  T  I  Q  F  P  Q  A  H  T  Q  L  I  :  G  G  E  S  K  R  V  T  F  W  C  V  N  A  N  M  D  S  A  S  S  P  K  :  E  S  K  M  I  V  S  V  T  G  A  T  G  F  V  G  K  R  L  V  Q  R  L  H  A   : D  K  H  Q  I  R  V  L  T  R  S  R  S  T  A  Q  S  I  F  P   : V  K  E  F  P  G  I  V  I  A  E  E  P  E  W  K  N  C  I  E  G  S  T  A  V  V  N  L  A  G  T  S  I  S  T  R  W  S  Y  E  :  I  K  K  D  I  K  Q  S  R  I  R  V  T  S  K  :  V  V  E  L  I  N  N  S  K  D  D  A  R  P  K  V  L  I  S  A  T  A  V  G  Y  Y   : G  T  S  E  T  E  V  F  D  E  K  S  P  S  G  N  D  Y  L  A  E  :  V  C  R  E  W  E  A  S  A  L  K  V  N  K  D  V  R  L  A  L  I  R  I  G  V  V  L  G  K  D  G  G  A  L   : A  K  M  I  P  L  F  M  M  F  A  G  G  P  L  G  S  G  K  Q  W :   F  S  W  I  H  L  D  D  L  V  D  L  I  Y  E  A  L  S  N  P  S  Y  K   : G  V  I  N  G  T  A  P  N  P  V  R  L  G  E  M  C  E  Q  L  G  S  T  L  G  R  P  S  W  L  P  V  P  E  I  A  L  K  A  V  L  G  E  G  A  S  V  :  V  L  D  G  Q  K  V  V  P  T  K  A  K  E  L  G  F  S  F  K  Y  R  Y  I  K  D  A  L  K  A  I  M  S  *  D  S  S  T  I  N  P  Y  S  F  S  M  A  M  K  W  N  E  N  T  N  N  L  L  L  L  L  *  S  S  S  S  G  D  M  S  F  F  P  Y  F  *  *  A  K  I  Q  F  I  N  I  M  S  L  S  K  V  Y  A  *  L  C  F  T  *  T  E  G  L  S  S  *  Y  G  S  S  K  T  V  Y  I  S  L  V  S  I  L  L  L  Y  G  R  T  F :   P  I  S  K  L  D  V  T  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110016" stop="109933"/>
                    <exon start="109843" stop="109775"/>
                    <exon start="108926" stop="108851"/>
                    <exon start="108244" stop="108185"/>
                    <exon start="108057" stop="107939"/>
                    <exon start="107818" stop="107774"/>
                    <exon start="107678" stop="107600"/>
                    <exon start="107453" stop="107392"/>
                    <exon start="107306" stop="107204"/>
                    <exon start="107006" stop="106946"/>
                    <exon start="106591" stop="106521"/>
                    <exon start="106418" stop="106279"/>
                    <exon start="106125" stop="106024"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGIASTFSWTNSISSTIQFPQAHTQLIGGESKRVTFWCVNANMDSASSPKESKMIVSVTGATGFVGKRLVQRLHADKHQIRVLTRSRSTAQSIFPVKEFPGIVIAEEPEWKNCIEGSTAVVNLAGTSISTRWSYEIKKDIKQSRIRVTSKVVELINNSKDDARPKVLISATAVGYYGTSETEVFDEKSPSGNDYLAEVCREWEASALKVNKDVRLALIRIGVVLGKDGGALAKMIPLFMMFAGGPLGSGKQWFSWIHLDDLVDLIYEALSNPSYKGVINGTAPNPVRLGEMCEQLGSTLGRPSWLPVPEIALKAVLGEGASVVLDGQKVVPTKAKELGFSFKYRYIKDALKAIMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="115202" PGL_stop="110482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115202" e_stop="115180"/>
            <exon e_start="113757" e_stop="113519"/>
            <exon e_start="113433" e_stop="113313"/>
            <exon e_start="112298" e_stop="112243"/>
            <exon e_start="111256" e_stop="110742"/>
            <exon e_start="110508" e_stop="110482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.281" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.704"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115202" e_stop="115180" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.281">
            <gDNA_intron_boundary i_start="115179" i_stop="113758" i_length="1422"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113757" e_stop="113519" e_length="239"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.953">
            <gDNA_intron_boundary i_start="113518" i_stop="113434" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113433" e_stop="113313" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.951" acc_prob="0.985">
            <gDNA_intron_boundary i_start="113312" i_stop="112299" i_length="1014"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112298" e_stop="112243" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112242" i_stop="111257" i_length="986"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111256" e_stop="110742" e_length="515"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110741" i_stop="110509" i_length="233"/>
          </intron>
          <exon e_serial="6" e_score="0.704">
            <gDNA_exon_boundary e_start="110508" e_stop="110482" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115202" stop="115180"/>
              <exon start="113757" stop="113519"/>
              <exon start="113433" stop="113313"/>
              <exon start="112298" stop="112243"/>
              <exon start="111256" stop="110833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110886" stop="110742"/>
              <exon start="110508" stop="110482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACTTTTCGCCATTGAATTAAG : GCACACCACACGAGGTCCTTATTTTGGATCGCCACCAGGTGCATCGCTGACTCATGGAGACAAGGAGTGAAAATGAACCAGAAGTAGACATCAAGGCACCAGAAATAAAATATGTTAGCTATGGGGGTGAACATCATCTACCTCTTATCATGAACCTTGTTGACGAAGAGCTCAGCGAGCCCTACTCTATCTTCACTTACCGCTACTTTGTCTATCTTTGGCCACAACTGTCTTTTATG : GCCTTCCATAAGGGGAAATGTGTAGGGACGGTGGTCTGCAAGATGGGAGAGCATCGTGGTACATTCAGAGGTTACATTGCGATGCTTGTGGTGCTTAAGCCTTACAGAGGCAAAGGAATCG : CTACAGAACTTGTCACGAGATCAATCAAGGTGATGATGGAATCTGGTTGTGAAGAG : GTGACTTTGGAAGCTGAAGTAACAAATAAAGGAGCACTCGCTTTGTATGGTCGTCTTGGATTTATTAGAGCAAAGAGACTTTTTCGTTATTATTTGAATGGTGTAGATGCTTTCCGGCTCAAGCTATTATTTCCTCGCGTAGAACCACAGCCCTTAAATTCCATGGCAGATGCTGGTGATGAGAGCCTCGAGTATAAAGAGCACACACATTGTGGAGAACAATCCCCCTTGTTGCCAACACAACATGTAAACTGAATATTCTGGACTCTTCAAAAATGTCGACAGGTATGTGTTGTGCACTCCAAAAGCATTTGGGAGAATCCAACATGGGTACGACAACACTTTTGGAGAGTCCAAATGCCAAAGAGACCACATTAGACCGCCTTTTTTCTCGTTGTAATCCCAATTTTGGTAGTTATTTTTTGTGTTGTCAAGTTGTAGAAACTGAGATCTTGTTTGCTGAAAGGTATAGTCATCAATCACTTGACTATTGATGCATCTGTGCTCTGAAAACT : AATACAAATACTAAAAATGAAAAAAAG</gDNA_template>
            <first_frame> I  L  F  A  I  E  L  R :   H  T  T  R  G  P  Y  F  G  S  P  P  G  A  S  L  T  H  G  D  K  E  *  K  *  T  R  S  R  H  Q  G  T  R  N  K  I  C  *  L  W  G  *  T  S  S  T  S  Y  H  E  P  C  *  R  R  A  Q  R  A  L  L  Y  L  H  L  P  L  L  C  L  S  L  A  T  T  V  F  Y   : G  L  P  *  G  E  M  C  R  D  G  G  L  Q  D  G  R  A  S  W  Y  I  Q  R  L  H  C  D  A  C  G  A  *  A  L  Q  R  Q  R  N  R :   Y  R  T  C  H  E  I  N  Q  G  D  D  G  I  W  L  *  R   : G  D  F  G  S  *  S  N  K  *  R  S  T  R  F  V  W  S  S  W  I  Y  *  S  K  E  T  F  S  L  L  F  E  W  C  R  C  F  P  A  Q  A  I  I  S  S  R  R  T  T  A  L  K  F  H  G  R  C  W  *  *  E  P  R  V  *  R  A  H  T  L  W  R  T  I  P  L  V  A  N  T  T  C  K  L  N  I  L  D  S  S  K  M  S  T  G  M  C  C  A  L  Q  K  H  L  G  E  S  N  M  G  T  T  T  L  L  E  S  P  N  A  K  E  T  T  L  D  R  L  F  S  R  C  N  P  N  F  G  S  Y  F  L  C  C  Q  V  V  E  T  E  I  L  F  A  E  R  Y  S  H  Q  S  L  D  Y  *  C  I  C  A  L  K  T  :  N  T  N  T  K  N  E  K  K </first_frame>
            <second_frame>  Y  F  S  P  L  N  *   : G  T  P  H  E  V  L  I  L  D  R  H  Q  V  H  R  *  L  M  E  T  R  S  E  N  E  P  E  V  D  I  K  A  P  E  I  K  Y  V  S  Y  G  G  E  H  H  L  P  L  I  M  N  L  V  D  E  E  L  S  E  P  Y  S  I  F  T  Y  R  Y  F  V  Y  L  W  P  Q  L  S  F  M  :  A  F  H  K  G  K  C  V  G  T  V  V  C  K  M  G  E  H  R  G  T  F  R  G  Y  I  A  M  L  V  V  L  K  P  Y  R  G  K  G  I   : A  T  E  L  V  T  R  S  I  K  V  M  M  E  S  G  C  E  E  :  V  T  L  E  A  E  V  T  N  K  G  A  L  A  L  Y  G  R  L  G  F  I  R  A  K  R  L  F  R  Y  Y  L  N  G  V  D  A  F  R  L  K  L  L  F  P  R  V  E  P  Q  P  L  N  S  M  A  D  A  G  D  E  S  L  E  Y  K  E  H  T  H  C  G  E  Q  S  P  L  L  P  T  Q  H  V  N  *  I  F  W  T  L  Q  K  C  R  Q  V  C  V  V  H  S  K  S  I  W  E  N  P  T  W  V  R  Q  H  F  W  R  V  Q  M  P  K  R  P  H  *  T  A  F  F  L  V  V  I  P  I  L  V  V  I  F  C  V  V  K  L  *  K  L  R  S  C  L  L  K  G  I  V  I  N  H  L  T  I  D  A  S  V  L  *  K  L :   I  Q  I  L  K  M  K  K   </second_frame>
            <third_frame>   T  F  R  H  *  I  K  :  A  H  H  T  R  S  L  F  W  I  A  T  R  C  I  A  D  S  W  R  Q  G  V  K  M  N  Q  K  *  T  S  R  H  Q  K  *  N  M  L  A  M  G  V  N  I  I  Y  L  L  S  *  T  L  L  T  K  S  S  A  S  P  T  L  S  S  L  T  A  T  L  S  I  F  G  H  N  C  L  L  W :   P  S  I  R  G  N  V  *  G  R  W  S  A  R  W  E  S  I  V  V  H  S  E  V  T  L  R  C  L  W  C  L  S  L  T  E  A  K  E  S  :  L  Q  N  L  S  R  D  Q  S  R  *  *  W  N  L  V  V  K  R :   *  L  W  K  L  K  *  Q  I  K  E  H  S  L  C  M  V  V  L  D  L  L  E  Q  R  D  F  F  V  I  I  *  M  V  *  M  L  S  G  S  S  Y  Y  F  L  A  *  N  H  S  P  *  I  P  W  Q  M  L  V  M  R  A  S  S  I  K  S  T  H  I  V  E  N  N  P  P  C  C  Q  H  N  M  *  T  E  Y  S  G  L  F  K  N  V  D  R  Y  V  L  C  T  P  K  A  F  G  R  I  Q  H  G  Y  D  N  T  F  G  E  S  K  C  Q  R  D  H  I  R  P  P  F  F  S  L  *  S  Q  F  W  *  L  F  F  V  L  S  S  C  R  N  *  D  L  V  C  *  K  V  *  S  S  I  T  *  L  L  M  H  L  C  S  E  N   : *  Y  K  Y  *  K  *  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113707" stop="113519"/>
                    <exon start="113433" stop="113313"/>
                    <exon start="112298" stop="112243"/>
                    <exon start="111256" stop="111002"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMETRSENEPEVDIKAPEIKYVSYGGEHHLPLIMNLVDEELSEPYSIFTYRYFVYLWPQLSFMAFHKGKCVGTVVCKMGEHRGTFRGYIAMLVVLKPYRGKGIATELVTRSIKVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLFRYYLNGVDAFRLKLLFPRVEPQPLNSMADAGDESLEYKEHTHCGEQSPLLPTQHVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113656" e_stop="113519"/>
            <exon e_start="113433" e_stop="113313"/>
            <exon e_start="112298" e_stop="111853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113656" e_stop="113519" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.953">
            <gDNA_intron_boundary i_start="113518" i_stop="113434" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113433" e_stop="113313" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.985">
            <gDNA_intron_boundary i_start="113312" i_stop="112299" i_length="1014"/>
          </intron>
          <exon e_serial="3" e_score="0.935">
            <gDNA_exon_boundary e_start="112298" e_stop="111853" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113656" stop="113519"/>
              <exon start="113433" stop="113313"/>
              <exon start="112298" stop="111853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339375" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATAAAATATGTTAGCTATGGGGGTGAACATCATCTACCTCTTATCATGAACCTTGTTGACGAAGAGCTCAGCGAGCCCTACTCTATCTTCACTTACCGCTACTTTGTCTATCTTTGGCCACAACTGTCTTTTATG : GCCTTCCATAAGGGGAAATGTGTAGGGACGGTGGTCTGCAAGATGGGAGAGCATCGTGGTACATTCAGAGGTTACATTGCGATGCTTGTGGTGCTTAAGCCTTACAGAGGCAAAGGAATCG : CTACAGAACTTGTCACGAGATCAATCAAGGTGATGATGGAATCTGGTTGTGAAGAGGTATGGCACAAAATTCTGAAACATTCATATTAGCGACTTTAAGACTGCCGATGTGAGAAACATAAATATAATGGCCACGGTATCAAAAATGTTAACTGTCCATTTTGGTTGTACAAGCTCAAGTAGGCCATTCTTTGTGACTTACTGCACGTCATCAGAGTATGCACATTGGCCTGATAATTTTGTCCATCTTGCAGATCAAGCAGAACTATGTGTTTAGTGCATTTTTGCTGTTCGAACTAAGACTGCCCTTTTTAAGATTTTCTATGCTTTTTCACATGTTGTTTTCTTCCAAACCACCCTCCACCTTCTTCCAGCTATAAAATTCTGTTTTCTTACAGGAACCATGAAGAACAATATATCCAAAACGAAAACGTCACAGATTTGTTG</gDNA_template>
            <first_frame> E  I  K  Y  V  S  Y  G  G  E  H  H  L  P  L  I  M  N  L  V  D  E  E  L  S  E  P  Y  S  I  F  T  Y  R  Y  F  V  Y  L  W  P  Q  L  S  F  M  :  A  F  H  K  G  K  C  V  G  T  V  V  C  K  M  G  E  H  R  G  T  F  R  G  Y  I  A  M  L  V  V  L  K  P  Y  R  G  K  G  I   : A  T  E  L  V  T  R  S  I  K  V  M  M  E  S  G  C  E  E  V  W  H  K  I  L  K  H  S  Y  *  R  L  *  D  C  R  C  E  K  H  K  Y  N  G  H  G  I  K  N  V  N  C  P  F  W  L  Y  K  L  K  *  A  I  L  C  D  L  L  H  V  I  R  V  C  T  L  A  *  *  F  C  P  S  C  R  S  S  R  T  M  C  L  V  H  F  C  C  S  N  *  D  C  P  F  *  D  F  L  C  F  F  T  C  C  F  L  P  N  H  P  P  P  S  S  S  Y  K  I  L  F  S  Y  R  N  H  E  E  Q  Y  I  Q  N  E  N  V  T  D  L  L </first_frame>
            <second_frame>  K  *  N  M  L  A  M  G  V  N  I  I  Y  L  L  S  *  T  L  L  T  K  S  S  A  S  P  T  L  S  S  L  T  A  T  L  S  I  F  G  H  N  C  L  L  W :   P  S  I  R  G  N  V  *  G  R  W  S  A  R  W  E  S  I  V  V  H  S  E  V  T  L  R  C  L  W  C  L  S  L  T  E  A  K  E  S  :  L  Q  N  L  S  R  D  Q  S  R  *  *  W  N  L  V  V  K  R  Y  G  T  K  F  *  N  I  H  I  S  D  F  K  T  A  D  V  R  N  I  N  I  M  A  T  V  S  K  M  L  T  V  H  F  G  C  T  S  S  S  R  P  F  F  V  T  Y  C  T  S  S  E  Y  A  H  W  P  D  N  F  V  H  L  A  D  Q  A  E  L  C  V  *  C  I  F  A  V  R  T  K  T  A  L  F  K  I  F  Y  A  F  S  H  V  V  F  F  Q  T  T  L  H  L  L  P  A  I  K  F  C  F  L  T  G  T  M  K  N  N  I  S  K  T  K  T  S  Q  I  C   </second_frame>
            <third_frame>   N  K  I  C  *  L  W  G  *  T  S  S  T  S  Y  H  E  P  C  *  R  R  A  Q  R  A  L  L  Y  L  H  L  P  L  L  C  L  S  L  A  T  T  V  F  Y   : G  L  P  *  G  E  M  C  R  D  G  G  L  Q  D  G  R  A  S  W  Y  I  Q  R  L  H  C  D  A  C  G  A  *  A  L  Q  R  Q  R  N  R :   Y  R  T  C  H  E  I  N  Q  G  D  D  G  I  W  L  *  R  G  M  A  Q  N  S  E  T  F  I  L  A  T  L  R  L  P  M  *  E  T  *  I  *  W  P  R  Y  Q  K  C  *  L  S  I  L  V  V  Q  A  Q  V  G  H  S  L  *  L  T  A  R  H  Q  S  M  H  I  G  L  I  I  L  S  I  L  Q  I  K  Q  N  Y  V  F  S  A  F  L  L  F  E  L  R  L  P  F  L  R  F  S  M  L  F  H  M  L  F  S  S  K  P  P  S  T  F  F  Q  L  *  N  S  V  F  L  Q  E  P  *  R  T  I  Y  P  K  R  K  R  H  R  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113656" stop="113519"/>
                    <exon start="113433" stop="113313"/>
                    <exon start="112298" stop="112210"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIKYVSYGGEHHLPLIMNLVDEELSEPYSIFTYRYFVYLWPQLSFMAFHKGKCVGTVVCKMGEHRGTFRGYIAMLVVLKPYRGKGIATELVTRSIKVMMESGCEEVWHKILKHSY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112223" stop="112023"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIHISDFKTADVRNINIMATVSKMLTVHFGCTSSSRPFFVTYCTSSEYAHWPDNFVHLADQAELCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="115157" e_stop="114410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="115157" e_stop="114410" e_length="748"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115157" stop="114410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332577" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACCCCACCCCCACCCTCCTTTTGGGGGTTCTTGAATGGTTTTTTTCTTGTTTCTTTGAATTGAGTTGTAGATTGTATAAAGATTGGATTTTTAATTTTGTTATTTGGGTTTTTTTTTTTTTGGTAAAGAATGAATCTTTATTGGATTTTTGAACTTGGGTGTTGTTTGGTAGCAAGATTAGAGTGTTTATTTTGATGTATTGAATTTAGAGATGAATGAAGCCATATTGTATTGTGTGTTTTATTGGTACTTGAATTTTGGTATGTTTGCTTTTCACCCTTTGTGGTAGTGGTTGGGAAAAAAAAATGTAACTTTGTAGGTATCCTGTGGAATCAGTCGAGTTGTGAGCTAGCTTTTGTGATTAAGCTAACCAATTTTGTTATCTTGTGTATTTTTTTAAAAATCTGTTTAGGTAGCATGATTGGGATGGAGTTAACATTGAGATTTGAGAAATAGAATAGATTAGATTACTCAGAAGTATATTTAAAGAAGGGTAAGTGCCTAAGTTTCGTCTGTCTCCAAAGGGGAGGTTGAGTGATTGATACATAGGAGAAACAACCTAAATATCCCAAGCTTGTATTACAGCTAAGGCAATTAGTGTGAGCCCATTTATTTCAATCTCGGTGGCAGATTATGAATTTGTCAAAGTGTGCGCAAGCTTATCCTATTGCATAAAACAAAAAGTCCTTTTTTGTTCATAAGACCGTCATTATGTTGGATATCAGTGAATATGTTCATTAAGTGA</gDNA_template>
            <first_frame> *  T  P  P  P  P  S  F  W  G  F  L  N  G  F  F  L  V  S  L  N  *  V  V  D  C  I  K  I  G  F  L  I  L  L  F  G  F  F  F  F  W  *  R  M  N  L  Y  W  I  F  E  L  G  C  C  L  V  A  R  L  E  C  L  F  *  C  I  E  F  R  D  E  *  S  H  I  V  L  C  V  L  L  V  L  E  F  W  Y  V  C  F  S  P  F  V  V  V  V  G  K  K  K  C  N  F  V  G  I  L  W  N  Q  S  S  C  E  L  A  F  V  I  K  L  T  N  F  V  I  L  C  I  F  L  K  I  C  L  G  S  M  I  G  M  E  L  T  L  R  F  E  K  *  N  R  L  D  Y  S  E  V  Y  L  K  K  G  K  C  L  S  F  V  C  L  Q  R  G  G  *  V  I  D  T  *  E  K  Q  P  K  Y  P  K  L  V  L  Q  L  R  Q  L  V  *  A  H  L  F  Q  S  R  W  Q  I  M  N  L  S  K  C  A  Q  A  Y  P  I  A  *  N  K  K  S  F  F  V  H  K  T  V  I  M  L  D  I  S  E  Y  V  H  *  V  </first_frame>
            <second_frame>  E  P  H  P  H  P  P  F  G  G  S  *  M  V  F  F  L  F  L  *  I  E  L  *  I  V  *  R  L  D  F  *  F  C  Y  L  G  F  F  F  F  G  K  E  *  I  F  I  G  F  L  N  L  G  V  V  W  *  Q  D  *  S  V  Y  F  D  V  L  N  L  E  M  N  E  A  I  L  Y  C  V  F  Y  W  Y  L  N  F  G  M  F  A  F  H  P  L  W  *  W  L  G  K  K  N  V  T  L  *  V  S  C  G  I  S  R  V  V  S  *  L  L  *  L  S  *  P  I  L  L  S  C  V  F  F  *  K  S  V  *  V  A  *  L  G  W  S  *  H  *  D  L  R  N  R  I  D  *  I  T  Q  K  Y  I  *  R  R  V  S  A  *  V  S  S  V  S  K  G  E  V  E  *  L  I  H  R  R  N  N  L  N  I  P  S  L  Y  Y  S  *  G  N  *  C  E  P  I  Y  F  N  L  G  G  R  L  *  I  C  Q  S  V  R  K  L  I  L  L  H  K  T  K  S  P  F  L  F  I  R  P  S  L  C  W  I  S  V  N  M  F  I  K  * </second_frame>
            <third_frame>   N  P  T  P  T  L  L  L  G  V  L  E  W  F  F  S  C  F  F  E  L  S  C  R  L  Y  K  D  W  I  F  N  F  V  I  W  V  F  F  F  L  V  K  N  E  S  L  L  D  F  *  T  W  V  L  F  G  S  K  I  R  V  F  I  L  M  Y  *  I  *  R  *  M  K  P  Y  C  I  V  C  F  I  G  T  *  I  L  V  C  L  L  F  T  L  C  G  S  G  W  E  K  K  M  *  L  C  R  Y  P  V  E  S  V  E  L  *  A  S  F  C  D  *  A  N  Q  F  C  Y  L  V  Y  F  F  K  N  L  F  R  *  H  D  W  D  G  V  N  I  E  I  *  E  I  E  *  I  R  L  L  R  S  I  F  K  E  G  *  V  P  K  F  R  L  S  P  K  G  R  L  S  D  *  Y  I  G  E  T  T  *  I  S  Q  A  C  I  T  A  K  A  I  S  V  S  P  F  I  S  I  S  V  A  D  Y  E  F  V  K  V  C  A  S  L  S  Y  C  I  K  Q  K  V  L  F  C  S  *  D  R  H  Y  V  G  Y  Q  *  I  C  S  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0099J09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114935" stop="114699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHIVLCVLLVLEFWYVCFSPFVVVVGKKKCNFVGILWNQSSCELAFVIKLTNFVILCIFLKICLGSMIGMELTLRFEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 40 chains have been computed
$ 
$ memory statistics:
$ 292840 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 13944 bytes was the average size of a spliced alignment
$ 24144 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1609 bytes was the average size of a predicted gene location
$ 10 megabytes was the average size of the backtrace matrix
$ 47 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 14:45:38
-->
