<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 05:59:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700868" ref_strand="+" ref_description="SGN-E700868 [FA14BE11]">
      <seq>ggtcgctaaggatactaaaaagcgcatgtgggaatacgtcaattcccaatttctacttccagtagaaggaaagaagtgggtgatgactggtcttcgtgatgcttggaggcgacacaagcaaaaaattaaaaagaatttttttgataaacacagtacccttgaggatatgctagcaaaatatcctgatggcattccacatcatcaattccgccagttgatcgagtattggaaacacccaactgttcaagctatatgcgagatgaattctcaaaacaggaaaaaacaaaagtggaggcatcgaatgggacctattaattttgctagagtacgcgtggcattgcgtgcagccaaagacaacaacgaagaaccatcaaagcctgaaatatttattgcaactcgtaccaagacgggaaaggaaatccaggctgatacccaagttgcaatagctgaacttcaaagtcgccaaaattctggggaaacagctgatgatgcatttagggcagtgtttggaaaggagcagcctggtcgagttaggtgctatggtagatcagtgacaacaagttctttgaagaaagatgaggaaattaacaatctaaaacaaaagcatgtcgatgtaatcacttctctaaaagaagaattgagagaagaaatgtgacatttattcactcaattgctgcaaaacaaccctggattgaattttcaagatatacccgggtgtgttggatctaaccttgcttcacctattgatgcaagtagtgcacaagctgtaaaaggcacaaatcttccatattcttcggggtcagctcaagattccgttcatcaaaaggaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0105D02.1" temp_strand="+" temp_description="C09SLm0105D02.1  AC216404.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0105D02 upload_account_name:spain (1 - 136919)">
        <position start="29408" stop="41389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29708" g_stop="29750" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29751" i_stop="29824" i_length="74">
            <donor d_prob="0.961" d_score="0.88"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29825" g_stop="30034" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="248" r_length="205" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30035" i_stop="30131" i_length="97">
            <donor d_prob="0.909" d_score="0.88"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30132" g_stop="30223" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="340" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30224" i_stop="30324" i_length="101">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30325" g_stop="30429" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="445" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30430" i_stop="40718" i_length="10289">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40719" g_stop="41086" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="826" r_length="381" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0105D02.1" gen_strand="+" ref_id="SGN-E700868" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0105D02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29708" e_stop="29750"/>
          <exon e_start="29825" e_stop="30034"/>
          <exon e_start="30132" e_stop="30223"/>
          <exon e_start="30325" e_stop="30429"/>
          <exon e_start="40719" e_stop="41086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCCAAATGATACTAAAAAGCGCATGTGAGAATACGTCAATGTAAAAACAACTACAATTGAGAATTCATATTTTTTTATTACTTACTGAAACTAAATATATTTTATTTTGCATAGTCAAAATTTCTACTTCCACTAGAAGGAAAGAAGTGGGTGATGACTGGTCTTCGTGATGCTTGGAGGCGACACAAGCAAAAAATTAAAAAGAATTTTTTTGATAAAAACAGTACCCTTGAGGATATGCTATCAAAATGTCTAGATGGCATTTCCACATAATCAATTCCGCCAATTGATCGAGTATTGGAAACACCCAAATGTTCAATTAAGGTTAAAATGGTGCATTTCCACTCATCGACTAATTCTATGTCATATCTATTCTTGTTATACATATCAATTCAACTATCTCTTTGTTTTTAACAATAAGATATATGCGAGATGAATTCTCAAAACAGGAAAAAACAAAAGTGGAGGCATCAAATGGGACCTATTAATATTGCTAAAGTACGCGTGGCATTGGTAATACTTAGCTGACATTTCATACAAAATTTGATTCTCATTTTTTTGTACTTTATAAGAACTTACAGATTTTTTAAAATTTCTTTTGATATAATCTGTAGCGTGCAGCCAAAGACAACAACGAAAAACCATCAAAGCCTGAAATATTTATTGCAACTCGTACCAAGATGGGAAAGTAAATCCAGGCTGATACCCAAATTGCAATACTAAGTTTTTCAAAGAGGATTATTAGTGAAGTTTATTCAGACTTAACATTTATATTGTGGGGAGTTTGACTACTGTTGACACCCAATTTTGACCGACCTTTGAACTTTATTAGAAATCCTATTCGATTAAATACGTATTTTAAATTTTAGAATTTTTAGTCGACTTTGCTTGAAAATTATATATTTTAGTATGTTTTATTTTATAAAATTATCGTAAATATTATAATATTTTAAAATTATTAATGAATTTCAAATGTTTTAAAATTTAAATGATTTTCTCAATTAAAATGTTTTGGCTCTTATTTATTAAAGTAAAAGAAAATTGTCTTCCTTACTTTACTCTTACTCATCTATTTTTTTAGTAATGAAATATTAAATTAAAAAAATCTGATTTGTCTCTCCTTATTTAAGATAAATAATAATAATATTTCTCTTCCTAATTTATTCTTGCTTATATTTGGAAGTGATATATTTTTATTTTGGCTGATTTGAATCGCCTTTTTAATAAGGAAAAAAATATATTTAATTAACTCCTTTAAATATCTTTTTTCCTTATTTGTTTCCCCCTCTTTGCTATATAAATAAGACCCCTCCCTTCATCAACTCAGAGACACTCATTCATTCTCAATAAAAATTTCTCTCATCACTCTCTCTTCTCTCATTGCTCTCTTGCTACTTTAACAACACATTAATATTCCGATAAATATTCAAGTGTTCTTCGCTATTTTGCTACTTCGTTCGAGTAAAAGGTGAATCAATTTGTTTTGCTTAACCCGTTAGTATTCCTAACATCTACATTATCTTCACATTCACATATTTGTGTAAGCTATTGTTTGTTTTTTTTATGTAGAATTCGTCATTAAATAATTGCATATCGTCTCACCTCGACTAATAAGTGTGATTACTTGTGTAGTTATTTGATTACTTTGACAGGTTTCAAACTTGAAGTTCAAGATGAAGATTGATTGAAGAAAGATTTATTTGTTTATTTGAATGTGTGTATATATATATATATATATATATATTTTATTTTTTGTCTATTTTATTTATTCAAATGTTGTAACAATTGTAACTCTAAAGATCATATAATAAATTTATTTAGGGGGTCGTCTAGGAGAGGGGGATTTATATGCTTACTTGTTCATTAAATTTTTTAGAAATCATGCCTATATGTTTGTCTTTAATCGTCTAGATTTAATATTTGTAGGTGTTATAATCTAATCAATTTTCAATTTGCTTGACGCCTTTGTTAACAAGTCTTAAAAAATAATAACAAGATTTCATTAATTTTTTTAAATGTTAAAATCAAATCCTAATAATCTAGTAGGTTGTTAGATGTTAAAAATATATTATAAATTTTCATTTGTCTTATCACGTAGAAACTATGCCTAAGTATTAAATTGTTCATATCATTTACAAAATCATGCATATATATGTTACATTGTTTTTTTAAACACCTAGAAATCATGTCTATAGGGTTGTAAATGAACTTTTAGCATATCCATAAAAAAAATTTGTTTGTGCATATTTGAGCCCTCCCCCTAAAATTAGTTAATATTATTTAATTAGTAATCATATTTGTTTTCCGCATTCATGATGCAATAATTTTTTTTAATAATACTAAATTAGAATCATTTCATGCATTTAACTTGGCTTTAAAAATATTTCATATCAAAACTTGTAACATCATTTTCTTAAAAAGTCATTATTCAATTTCTTTTAAAACTTTGGATTGATTTTGACATTGTTCATTTTGCAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTTGGAAAGTCAAATGAACTAAGAGGTCTAGTTCCAATTTTTAAACCCGACGCATCCTCGGAAGTACTACCTACCCTTGAATTTCAAAAGGAATTATGTGTATCTATATGTTTATGTGCCTACATGTAAACTAGATCTTTTAAATCATTTTTTCAAAAATATAAACTATTGTTTTTTTTAAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGTGCGATCAACAATATCGTGGCATAATCCCTATAAAGAAACAAACGTTTTTTAAAAAATAAAAATTACATATTCAAAACTTGCTCAATTTTCAAACTTTAATTTTGCACATATTATTTACTTAATATTTGCCAATTTTGTCTATAACATAGCCTCGTATGTTAAATAAATAAAAAATAAACTTGATTGTTTATTATTGCTGTCACCTAGCCTCGCATGTTTAAATTAATAATATAGCCTGAATTGTTTTATACTTGTTATCACTTAGCAAGCATATTAATGAATAATATTGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCTGGGAACCACGCTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATTCTCTGGCTCGTTAACCTTAATTAGACTTAATTATGTTAGATAGGTGCCCTAACACGCCTTAATTCGTTAGGTGACGACTCCAAACTCAAAATCCCAAAAGAGTAGTTAGGTCGCGCACAAAACCCGTTTTCTGCGAAAATGTGGCGCGATAGAATGGCGACTCCGCTGGGGATATTAGGTTCTTACCATTACGTGTTAACTGCTTTTTTATGTGGGGTTTACTTTATTTTTGTCATTTCACTATTTGTTAGGTGCTTACCATGTTTAGCTTATTTTGTTTCCTTATTTATTGTCTTCTCTCCATGTTCCACCCTTTTCCTTTTCCTTAATTGTTTATTATCATGTTTCACCTTTTCCCTTTCCCCTTATTTGCTTACATGTTTAGTCTCGTATTCTCCTGTTTTATTTGTGTAGTTTTCATATCTTTATATGTTTAATTTCCTTTATTCATGCTTATTTATTTATTTATTGTTTATAAGCTGCCTATATGTTACTGCTTTCCAATTTAAATGCTAAATGATTATTGCTTTGATAATTGGCATCACGCTCATACTTCCCCCAATTGGGACCCTCTTCCTTTTTTTTTTTTTGTTCTCGTGATGTTGTGCCTTTGCACCTCTCACAACTACTTCAATCTTATTCAAATACCCATTATAGAGAGTCGGCATATGCGTGGACATAGTGGATAGTTTTACTACCGCGAAGCCACGAGCCTCTCGCATAGAATCCCTTTCAAGTCCGTGTCAAGCCACTCTTAGAAGTCGTGGTTAAGTCATACATGCTTCATAAAACCTAGGTGGTTTAACCCTTGGTGTCAATCCACATAATTAGTAGTCACCCTATTGTCTAAAGGGCCCCAACACCCTTAGACAAATTGCATATTTTTGTGTCAACGTGATCATGATAATTAAATCAAGCCAACGTTGTCAAAATGGAGTTTAGAAGTCGTTTGTTACTTTGTTTGCAGAGTCATGGCTCACCCTCACTTTTCAAACACGCAAATGGTGGTCAAAGTTAATCCAATTATGAAGACTTGGTGGAAAGATATTAAAAAAATCAAGAGTTAGAAGGAAATGAAACCGTTAGGCGGCCTCACTGCTTTGATCTCCGTAGAGTCAGATCGTCACTTAATCAAGGCAGAGAGAAGATGGGCTAGCAACCTCCTCAACACCGATTATGACATTATCCCAGAAATGAGGAAGCAGATTGTGCCTAACATTGGAGAGCAACATAATTGATGTTTTTTTTATTATTCTTTTTATTCCCCATGTGTTATCCCTAGACCTTTAGTTATCTCTAGATTGATGTAATAAATAGAAATTATTTCAATAATTGAAAGTCGTTTTATTGTCTAACTCTAAACTCCAAATTGATAAATAAGGCTTGAATTAGTTATTGTGCATCACTTATGTGTCGCTTAGGCCTACCTCTGGCTCAACGAGGCTCTTTTGCATTTAGGTCGTTTATCTTAAATAACGTGTTTGATATCTCAATTTATGCAATGTTCTAACTTGAGTTTTATTTTGCTTTTATTTATTTTACCCTTTTCCAATGGTTGATCTGTAGACCATGGTTTATCACACGCGATCAAAGGTCATTTCCTCTTCTTTCGACTGAGATTTGCAAAGGAAAAAGTGAAAGGGACTAATGCTAAGGTTATGTGCAAAAACTATTGAAAAAGTGTCTTTCAGACAAGTTGGTATCAAACCTTGAGCAGAAAATAAAGAAGTTAGAAGTAGAGTTGTTGGACATGCGTGAGTGGGCAAAGTTTTTACTCTCTGCCAATCCAACTTTGAAGATGAACATTCACTCTCCAAAATAATCTTCCTCCGGATTACTCTACCTCTCAAAGTCAACCGAGCTTCATTCAAATGCTTCTAAAAACATCTACTTTCCAAATCACCCATATCCTCCGCAAACACCATGCATATGCTCTTAAACCTCAACATCTTACTTTACACCCGCATTATCCTACTATGCAAGCTCCTCAATATGAAACACCTCTGCACCAAGTTCCTTGGCATCATGCACCTCTCATGCCATTTCCAAACCCTCCATATCAAATGTCTCTGTACCAAAGGCCTCCTATGCCATATCTTTTGGAACTACGTTAGACCTGATTCTCGTTTAGGAGGGGATACGTAGGCGCTCATATGGGGTTCGGTTTTATCATAAATAAAACTTTTATTTTCCCCTTCTATTGATAACTGGGGCAGAATTTTTGAGAGGTTCTCAAAAATTCCATCAAGATTTCTTCTTGCGCATCTCCATACTGGGGCAGAATTTTATAGTAAACTCAAAAATTCCATCAAAAACATCTTCTCAACAACTGGGGCATAATTTTGAGAGGATCTCAAAATTGCTAAAAATCAAGACCGGGTAGAAATTTTTAAGAGAATCTGGAAAAATCCAACAGTCGAGCTACAATTACAACAGATCAGAATAACAGAAGTTCTACACTGGGGCAGAAATTTTGAGAAAATCTCAAGATTTTCGACAATACTCCGAAGAGCATTCTGTCAAACACCAAAGAAGCACGCAGTGCCAAATCATGGATATAGATCAACCTCCCCTTCAAACTAACTATTTTTCTTTGAATGTAGAAAATACAGGTACATATACAAAGGCAGTTTCAACAATCAACATACCACTTTTGAGCCTGACAAATGACACTTGACCCTTCCAACAAGGCGAATGTCCAAGCTACTACATACCCTCATCATTCAATATGAAGTTGCACTATGCCTGAGATGTAGGTTTGCATGACTACATTATGCCCGAGATCGCACTATGCTCGAGAAATGCATCATAGCATGTGCCCGATAATGCATGTGCCCGAAAATGCATCATTGCATTGTGCCCGAAAAAATGCATCATTGCATTGAGACCGAAGAAATGCATCATTGCAATGTGCCCGAAGATATGCATCATTGCATGTGCCCGATAATTCATGTGCCCGAATAAATACATCATTGCATGTGCCTGATAATGCATCATTGCATGTGCCCAACAATGCATGTGCCCGAAGAAATGCATCATTGCATTGCGCCCGAAGAAATGCATCATTGCATTGTGCCCGAAGAAATCCATTATTGCATGTGCTCAATACTGCATGTGCTCGAAGAAATGCATCATTGCATGTGCCCAAAGAAATGCATCATATGATGTGCTCGATATTGCATGTGCCCGAAGAAATGCATCATCGCATTGTGCCCGAGACTGCATTGTGCCTGAAATTTGCATAAGCTCAAGATTGCATCGTGCTCGAAGTTTACATGTGCCCAAATCAAATCAACAAATGTCAAAAACAGATACGCTCTCTTTACTCATTACTGATATCCCAAAGGCGTCATCCTCCAAAGGCATCATCTTTCATGGCCTGCGGACTTCATGTCATGGCCTGAGGACTTATTTTATGCATATCATGTTCCTAAGGCGTCATAGTCTAAAGGCATCATCCTCATGGCCTGCGGACATCATATCATGGCCTAAGGGTTTAATTTCTGTCTATCATGATCCGAAGGTGTCATAGTCTAAAGGCGTCATTTTCATGGCCTACAGACAACATTTTCATGACCTGAGGATACACCCTGCATATCATGGCCCTAGACATCATAGCCTAAGACGTCATTTTTCATGGTCTTAAGGCAAACATTCATGGTCAATATGGGAAATTGCATCATGTTTACATTTACCGCTTTTTCTGCTCTAATTACTCTATTACAAGTTACAGTTATGCAGATTACAGACAAAGTCGCCATTTGAACGACTGTTCACTTGTTTACAAAACAAAGGTTCCGACAAATTCTTGGCTACTCTCACTATCGTTTCGCTACTCATCTATCATTCAGGCTACCATGAAGATATCTTCGGATTCAACTCACCACTGTGACTTTCTATCTCTTCAGCTAGGCTCGTCCGCCTTACAATACGACATCTAGGCTCGTCCGCCTTACAATGTGACATCTAGGCTCGTCCGCCTTACAATACGACATCTAGGCTCGTCCGCCTTACAATAGGACATTCAGGCTCTTCTGCCTTACAATAGGATGTTTAGGCTCGTCTGCCTTACAATACGACATTTAGGCTCTTCCGCCTTACAATAGGATATTCAGGATCTTCCGCCTTACAATAGGATGTTTAGGCTCTTCCGCCTTACAATAGGATGTTTAGGCTCGTCTGCCTTACAATACGACATTTAGGCTCGTCTGCCTTATAATACGACATTTAGGCCCTTCCGCCTTACAATAGGATGTTTAGGCTCTTCCGCCTTACAATAGGATGTTTAGGCTCGTCTGCCTTACAATACGACATTTAGGCTCGTCTGCTTTATAATACGACATTTAGGCCCTTCTGCCTTACAATAGGATGTTTGGGCTCTTCCTCCTTACAAAAGGATGTTTAGGCTCGTCTGCCTTACAATACGACATTTACTCTCGTCTCTCCTTACAACTAGACATTTTGCTTATATTATTATATGTTTATACTATCAAGTATTTTGGAGTTTGACGTTATTCTTCAGAGATGGGTTTCAATCCTTAAAGAAGTTAAAGACCGTCAAGGTTTTCACTACGTCTCAAAGCAGATACGCTCCTTATCACCTCTATTCATTTATTTAGAACTCATTTTTTATCATTATTGGTCATACTTTATCTATTCATAAGCTAACATTTTATCTAGAATTTGCAGATATAATCGATCGCCCTTGATCACAATTATCATGCTATCCTCTATCACAACAAAGACTCTATCAATTCTTCAAACCTCAAGCTTCGCTCAAAGGCTGATAGCCACACTCTATCACGCTCTTCCTGTATCTGTCACGCTCTTCTAGCCTCTCAATCTCTCTTCTCGCTACTCTAATTTTATCCATTCAAGCCGATATCGTGCCTTCCGAACACCTTAGCGCTCTTTCAACTTTTAAGAGCTTCATTTGCTCTTGAATCTAGAACTACACACGACCTGATTCTCGTATAACCAGAGATATGTAGGCGGCTTAATACCAAAGTCTCGGTCGTACCCTTTTCAACTCTATATCGTTTCAATTGATCCAACTGACATCTTTCGCCGGTAGGACAAAATCAGCTACTAAGTCAACGTTGGTTGCCTGACAATTCATTCTTCATTTTCAATCACCCAAGGGGCAGCTGTTGACACCCAATTTTGACCGACCTTTGAACTTTATTAGAAATCCTATTTGATTAAATACGTATTTTAAATTTCAGAATTTTTAGTCGACTTTGCTTGAAAATTATATATTTTAGTATGTTTTATTTTATAAAATTATCGTAAATATTATAATATTTTAAAATAATTAATGAATTTCAAATGTTTTAAAATTTAAATGATTTTCTCAATTAAAATGTTTTGGCTCTTATTTATTAAAGTAAAAGAATATTTTCTTCCTTACTTTACTCTTACTCATCTATTTTTTTAGTAATGAAATATTAAATTAAAAAAATCTGATTTGTCTCTCCTTATTTAAGATAAATAATAATAATATTTCTCTTCCTAATTTATTCTTGCTTATATTTGGAAGTGATATATTTTTATTTTGGCTGATTTGAATCTACTTTTTAATAAGGAAAATAATATATTTAATTAACTCCGTTAAATATCTTTTTTCCTTATTTGTTTCCCCCTCTTTGCTATATAAATAAGACCCCTCCCTTCATCAACTCAGAGACACTCATTCATTCTCAATAAAAATTTCTCTCATCACTCTCTCTTCTCTCATTGCTCTCTTGCTACTTTAACAACACATTAATATTCCGATAAATATTCAAGTGTTCTTCGCTATTTTGCTACTTCGTTCAAGTAAAAGGTGAATCAATTTGTTTTGCTTAACCGGTTAGTATTCCTAACATCTACATTATCTTCACATTCACATATTTGTGTAAGCTATTGTCTGTTTTTTTTTATGTAGAATTCGTCATTAAATAATTGCATATCATCTCACCTCGACTAATAAGTGTGATTACTTGTGTAGTTATTTGATTACTTTGACAGATTTCAAACTTGAAGTTCGAGTTGAAGATTGATTGAAGAAAGATTTATTTGTTTATTTGAATGTATATATATATATATATATATATATATATTTTATTTTTTGTCTATTTTATTTATTCAAATGTTGTAACAATTGTAACTCTAAAGATCATATAATAAATTTATTTAGGGGGTCGTCTAGGAGAGGGGGATTTATATGCTTACTTGTTCATTAAATTTTTTAGAAATCATGCCTATATGTTTGTCTTTAATCGCCTAGATTTAATATTTGTAGTTGTTATAATCTAATCAATTTTCAATTTGCTTGACGCCTTTGTTAACAAGTCTTAAAAAATAATAACAAGATTCCATTAATTTTTTTAAATGTTAAAATCAAATCCTAATAATCTAGTACGTTGTTAGATGTTAAAAATATATTATAAATTTTCATTTGTCTTATCACGTAGAAACTATGCCTAAGTATTAAATTGTTCATATCATTTACAAAATCATGCATATATATGTTACATTGTTTTTTTAAACACCTAGAAATCATGTCTATTGGGTTGTTAATAAACTTTTAGCATATCCATTAAAAAAAATTTTTTTGTGCATATTTGAGCCCTCCCCCTAAAATTAGTTAATATTATTTAATTAGTAATCCTATTTGTTTTCCGCATTCATGATGCAATATTTTTTTTTAATAATACTAAATTAGAATCATTTCATGCATTTAACTTGGCTTTAAAAATATTTCATATCAAAACTTGTAACATAATTTTCTTAAAAAGTCATTATTCAATTTCTTTTAAAACTTTGGATTGATTTTGACATTGTTCATTTTCAAAATAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAATTTTTAAACCCGACGCAACCTCGGAAGTACCACCTACCCTTGAATTTCAAAAGGAATTATGTGTATCTATATATTTATGTGCCTACATGTAAACTAGATCTTTTAAATCATTTTTTCAAAAATATAAAATATTGTTTTTTTTAAGACTGACCTCGAATCAAAATTGTTTCTATGGTGGAGGAGTACGATCAACAATATCGTGGCATCATCCCTATAAAGAAACAAACATTTTTTAAAAAATAAAAATTACATATTCAAAACTTGCTCAATTTCAAACTTTACTGTTGCATATATTAATTGCTTAATATTTGCAAATTTTGTCTATAACATAGCCTCGTATGTTAAATAAATAAAAAATAATCTTGATTGTTTATTATTGCTGTCACCTAGCCTCGCATGTTTAAATTAATAATATAGCCTGAATTGTTTTGTACTTCTTATCACTTAGCAAGCATATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCTACGCTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATTCTCTGGCTCGTTGACCTTAGTTAGACTTAATTAGGTTAGATAGGTGCCCTAACGCGACTTAATTCGTTAGGTGGCGACTCCAAAATAAAAATCCCAAAACAGTTGTTAGGTCGCGCACAAAACCCGTTTTCTGCGAAAATGTGGCGCGATAACTACATTAAATTTTAATCACGTATGCCTTCTTCTTCTTCTTCTTGTGAAAGTTCGAGGAGATATCAATTATTTGTCGACATTGTTTAAATATTTTTTACGAAAAGTTTTCATAATGTTTTAATGCTTGATCGCTATCATAGGATTGGAAATAAAATAGTACTTACAATTCACTATGGATGCCAATTTTATTCAATAGGCTGAACATCAAAATCGCCAAAATTCTGGGGAAACACCTGATGATGCTTTTAGGGCAGTGTTTGGAAAGGAGCAGCCAGGTCGAGTTAGGTGCTATGGTAGATCAGTGACAACAAGTTCTTTGAAGAAAGATGAGGAAATTAACAATCTTAAACAAAAGCATGCCGATGAAATCACTACTCT--------AA---AG-GAAG-AATGCGACATTTATTCACTCAATTGCTGCAAAACAACCCTGGATTGATTTTTCAAGATATACCAGGGTGTGTTGGATCTAAGCTTGCTTCACCTATTGATGCAAGTAGTGCACAAGCTGTAAGACGCACAAATCTTCCATTTTCTTCGGGGTCCGCTCAAGATTCGGTTCTTCAAAAG</genome_strand>
        <mrna_strand>GGTCGCTAAGGATACTAAAAAGCGCATGTGGGAATACGTCAAT..........................................................................TCCCAATTTCTACTTCCAGTAGAAGGAAAGAAGTGGGTGATGACTGGTCTTCGTGATGCTTGGAGGCGACACAAGCAAAAAATTAAAAAGAATTTTTTTGATAAACACAGTACCCTTGAGGATATGCTAGCAAAATATCCTGATGGCA-TTCCACATCATCAATTCCGCCAGTTGATCGAGTATTGGAAACACCCAACTGTTC----AAG.................................................................................................CTATATGCGAGATGAATTCTCAAAACAGGAAAAAACAAAAGTGGAGGCATCGAATGGGACCTATTAATTTTGCTAGAGTACGCGTGGCATTG.....................................................................................................CGTGCAGCCAAAGACAACAACGAAGAACCATCAAAGCCTGAAATATTTATTGCAACTCGTACCAAGACGGGAAAGGAAATCCAGGCTGATACCCAAGTTGCAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAACTTCAAAGTCGCCAAAATTCTGGGGAAACAGCTGATGATGCATTTAGGGCAGTGTTTGGAAAGGAGCAGCCTGGTCGAGTTAGGTGCTATGGTAGATCAGTGACAACAAGTTCTTTGAAGAAAGATGAGGAAATTAACAATCTAAAACAAAAGCATGTCGATGTAATCACTTCTCTAAAAGAAGAATTGAGAGAAGAAATGTGACATTTATTCACTCAATTGCTGCAAAACAACCCTGGATTGAATTTTCAAGATATACCCGGGTGTGTTGGATCTAACCTTGCTTCACCTATTGATGCAAGTAGTGCACAAGCTGTAAAAGGCACAAATCTTCCATATTCTTCGGGGTCAGCTCAAGATTCCGTTCATCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208670" ref_strand="+" ref_description="SGN-E208670 [cLEC-39-F5]">
      <seq>agaaacaaacatttttttaaaaataaaaaaatttcatattcaaaacttgctccattttcaaaactttactttctcacatattaattgtttaatattacaaattttgtctataacatagcctcgtatgttaaataaataaaaaataaacttgattgtttattattgctgtcatctagcctcgcatgtttaaattaataaaatagccttaattgttttatacttgttatcacttagcaaagcacattaatgaataataatgaagtgaccttgattgctacttgtaacccccacatagattgcatgagatacggccgggacccacacttgtggacctngaggcatgcctaacaccttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0105D02.1" temp_strand="+" temp_description="C09SLm0105D02.1  AC216404.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0105D02 upload_account_name:spain (1 - 136919)">
        <position start="39687" stop="40640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39987" g_stop="40340" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0105D02.1" gen_strand="+" ref_id="SGN-E208670" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0105D02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39987" e_stop="40340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAACATTTTTT-AAAAA-ATAAAAATTACATATTCAAAACTTGCT-CAATTTC-AAACTTTACTGTTGCATATATTAATTGCTTAATATTTGCAAATTTTGTCTATAACATAGCCTCGTATGTTAAATAAATAAAAAATAATCTTGATTGTTTATTATTGCTGTCACCTAGCCTCGCATGTTTAAATTAATAATATAGCCTGAATTGTTTTGTACTTCTTATCACTTAGC-AAGCATATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCTACGCTTGTGGACCTCGAGGGATGCCTAACACCTTCCCC</genome_strand>
        <mrna_strand>AGAAACAAACATTTTTTTAAAAATAAAAAAATTTCATATTCAAAACTTGCTCCATTTTCAAAACTTTACTTTCTCACATATTAATTGTTTAATA-TTACAAATTTTGTCTATAACATAGCCTCGTATGTTAAATAAATAAAAAATAAACTTGATTGTTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGTTTTATACTTGTTATCACTTAGCAAAGCACATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTNGAGGCATGCCTAACACCTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256788" ref_strand="+" ref_description="SGN-E256788 [cLEG-40-A22]">
      <seq>ttttgtctataacatagcctcgtatgttaaataaataaaaaataaacttgattgtttattattgctgtcatctagcctcgcatgtttaaattaataaaatagccttaattgttttatacttgttatcacttagcaaagcacattaatgaataataatgaagtgaccttgattgctacttgtaacccccacatagattgcatgagatacggccgggacccacacttgtggacctcgaggcatgcctaacaccttcccctcgaggtaatttgaacccttaccctaatctctggctcgttgaccttagttagacttaattaggttagataggtgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0105D02.1" temp_strand="+" temp_description="C09SLm0105D02.1  AC216404.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0105D02 upload_account_name:spain (1 - 136919)">
        <position start="39785" stop="40719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40085" g_stop="40419" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0105D02.1" gen_strand="+" ref_id="SGN-E256788" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0105D02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40085" e_stop="40419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCTATAACATAGCCTCGTATGTTAAATAAATAAAAAATAATCTTGATTGTTTATTATTGCTGTCACCTAGCCTCGCATGTTTAAATTAATAATATAGCCTGAATTGTTTTGTACTTCTTATCACTTAGC-AAGCATATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCTACGCTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATTCTCTGGCTCGTTGACCTTAGTTAGACTTAATTAGGTTAGATAGGTGCCCT</genome_strand>
        <mrna_strand>TTTTGTCTATAACATAGCCTCGTATGTTAAATAAATAAAAAATAAACTTGATTGTTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGTTTTATACTTGTTATCACTTAGCAAAGCACATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGCATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAA-TCTCTGGCTCGTTGACCTTAGTTAGACTTAATTAGGTTAGATAGGTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243969" ref_strand="+" ref_description="SGN-E243969 [cLEE-1-A19]">
      <seq>ggaaatctgccaaaacgcggcttggtcgacggaccacgcgacggaccgtcgtggactctgtcgtcccatacttggtgcaatttcttctgctgctttcttcattcccctcgacggcaagtgtaacggaccgtcataggtacaacggtctgtcgagggtcttcgtttcaaaatacttcaactcttggaatctgggtactgggatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaagcttcgtaatcccacacttggtcagacttccccatcttccttcagcagcttctctacgctaccacctacggaccgtcacaagcacgacagaccttcaaaagctccgtaggtggtctcttctgcatttttttgctcaaaatctccgctttcagcttttgacagatttcctgcaaaacaaagagaaacttatatcaaaattagcacaaaaaaggctttcggacactttaaacttaaggcaaaagtattaattatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0105D02.1" temp_strand="-" temp_description="C09SLm0105D02.1  AC216404.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0105D02 upload_account_name:spain (1 - 136919)">
        <position start="97964" stop="96846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97664" g_stop="97146" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0105D02.1" gen_strand="-" ref_id="SGN-E243969" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0105D02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97664" e_stop="97146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCTGCCAAAACGCGGTTGGGTCGACGGACCACGCGAGGAACCGTCGTGAACTCCGTCGTCCCATACTTGGTGCAATT-CTTCTGGTGCTTTCTTCATTCCCCTCGACAGCAAGTGGGACAGACCGTCATAGGCACAACGGTCCATCGAGGGTC-TCGTTTAAAAATACTTCAACTCTTGGAATCTGGGTATTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGCACCGTCATAGCCATGACGGACCATCACAATCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTACCACCTACGGACCGTCACATGCACGATGGACCGTCATATGCTCCGTAGGTGGTCTCTTCTGCA-TTTTTCACTCAAAATCTCCGCATTAAGCTTTGGACAGATTTCCTACAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCAGACACACTAAACTTAAGGAAAAAGTAATAATTATACC</genome_strand>
        <mrna_strand>GGAAATCTGCCAAAACGCGGCTTGGTCGACGGACCACGCGACGGACCGTCGTGGACTCTGTCGTCCCATACTTGGTGCAATTTCTTCTGCTGCTTTCTTCATTCCCCTCGACGGCAAGTGTAACGGACCGTCATAGGTACAACGGTCTGTCGAGGGTCTTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTACCACCTACGGACCGTCACAAGCACGACAGACCTTCAAAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTTTGCTCAAAATCTCCGCTTTCAGCTTTTGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAAGGCTTTCGGACACTTTAAACTTAAGGCAAAAGTATTAATTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577717" ref_strand="+" ref_description="SGN-E577717 [LE15CC06]">
      <seq>ctctatgactctagtacctagcaaataggagcaaaatatctcaaaagcaaagactactgcgaggagttcatgctcagtcactgtgtagttcttctgggcttcatttagggctttactagcatagtaaattgggtgaaggattttgtttcttctctgtcccaatactacaccaagagccaccccactagcatcgcacattacctcaaatggacttttccaatccggagaaataatgataggtgcagacactaacttctcttttagctcactgaatgctttaagacaggactcatcaaaacaaaatttacattctttcttcagtaatttgcacaatgggtgtgcaatctttgaaaagtctttgatgaatctccgataaaaacctgcatgcccaagaaagcttctcacacctttcatagagatcggtgggggaagtctctctattacctcaactttagctcgatcaacctctattcccttttctgaaatgcgatgacccaacacaatacctttttttaccatgaaatgacacttttcccagtttagtaccagattgcagtcttcacatctcttaagaacctcagattaattggtcaagcatcgctcaattgaatcaccaaccacagaaaaatcatccataaaaacctctatagtatcctccaccatgtcagaaaatattgacatcatatatctctgaaaggttgcgggtgcattgcacaacctaaatggcattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0105D02.1" temp_strand="-" temp_description="C09SLm0105D02.1  AC216404.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0105D02 upload_account_name:spain (1 - 136919)">
        <position start="103062" stop="101729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102762" g_stop="102029" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0105D02.1" gen_strand="-" ref_id="SGN-E577717" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0105D02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102762" e_stop="102029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATAACTCAAGTACCTAGCAAATAGGAGCGAAATTTCTCAAAAGCAAAGACTACTGCGAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTATACCAAGAGCCACCCCACTAGCATCACACATTACCTCAAATGGACTGTTCCAATACGGAGAAATAATGATAGGCGCAGATACTAACTTTTCTTTTAGCTCACCGAATGCTTTAAGACAGGATTCATCAAAGCAAAATTTACATTCATTCTCCAGCAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCTGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCACAGAGATCGGCGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAATTTCTATGCCCTTTTCTGAAATGCGATGACCCAACACAATACCCTCTTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAAATTGCAGTCATCACATCTCTTAAGAACCTCAGATAAATTGGTCAAACACCGCTCGAATGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAATGACATTCTTC</genome_strand>
        <mrna_strand>CTCTATGACTCTAGTACCTAGCAAATAGGAGCAAAATATCTCAAAAGCAAAGACTACTGCGAGGAGTTCATGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTACACCAAGAGCCACCCCACTAGCATCGCACATTACCTCAAATGGACTTTTCCAATCCGGAGAAATAATGATAGGTGCAGACACTAACTTCTCTTTTAGCTCACTGAATGCTTTAAGACAGGACTCATCAAAACAAAATTTACATTCTTTCTTCAGTAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCCGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCATAGAGATCGGTGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAACCTCTATTCCCTTTTCTGAAATGCGATGACCCAACACAATACCTTTTTTTACCATGAAATGACACTTTTCCCAGTTTAGTACCAGATTGCAGTCTTCACATCTCTTAAGAACCTCAGATTAATTGGTCAAGCATCGCTCAATTGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATATATCTCTGAAAGGTTGCGGGTGCATTGCACAACCTAAATGGCATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350708" ref_strand="+" ref_description="SGN-E350708 [cTOS-7-K22]">
      <seq>ggggatttagtgcttctattcaattccagattgcgcttgtttccaggcaaactcaagtccaaatggactggtccttacacggttacccaactattccctcatggagcagttgagttggaaacgaaggagggtgtgcggttcaaggtgaatggacagcgcataaaaatctatctcggacatgctgaatcggcgaatgaagtgatcgaggcataccatcttgatgaagtctgagtaatcaagtggccccagtcgtgccgcgacattaaatcaggcgcttgttgggaggcaacccaatacttatcgtctttttaataatggtagcatttttttctataaatgggttttaaatttgcaggcacatcaccaagaaattctgcagaaaactactccgcagtagccactgacggatacaacaacggaccgtcgtatgcatccgtcacaccaggtatgtatttctgtcatttttgaaattagggcgcatacgacggaacctacgatggggcgtcgcaagtgcgatggaccgtcgtcggggaaccgttgcgcgattaatgaaatctnaccgacccacccggctggaccttttcaaatctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0105D02.1" temp_strand="+" temp_description="C09SLm0105D02.1  AC216404.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0105D02 upload_account_name:spain (1 - 136919)">
        <position start="103769" stop="104981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104069" g_stop="104682" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0105D02.1" gen_strand="+" ref_id="SGN-E350708" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0105D02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104069" e_stop="104682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGATTTTGTGCTTCTATTCAATTCCAGATTGCACTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAAGGTCAATGGACAGCGCATAAAAATATATCTCGGGCATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGATGCAACCCAATACTTATATTCTTTTTAATAATGGTAGCAT-TTTTTCTATTAATGGGTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGATACAACGACGGACCATTGCGAATGCAACGGACCGTCGTATGCATCCGTCACACCAGGTACGTATTTCTGTCA-TTTTGAAATTAGGGCACGCACAACGGAACCTACGACGGGATGTCGCAAGTGCGACAGACCGTCGTCAGGGAACCGTCGCGCGATTAATGAAATCTACCCGACCCGACCCGGCTGGACCCTTTTCAAAATCTGACT</genome_strand>
        <mrna_strand>GGGGATTTAGTGCTTCTATTCAATTCCAGATTGCGCTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACGAAGGAGGGTGTGCGGTTCAAGGTGAATGGACAGCGCATAAAAATCTATCTCGGACATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGAGGCAACCCAATACTTATCGTCTTTTTAATAATGGTAGCATTTTTTTCTATAAATGGGTTTTAAATTTGCAGGCACATCACCAAGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGAT-------------A---C-AA--CAACGGACCGTCGTATGCATCCGTCACACCAGGTATGTATTTCTGTCATTTTTGAAATTAGGGCGCATACGACGGAACCTACGATGGGGCGTCGCAAGTGCGATGGACCGTCGTCGGGGAACCGTTGCGCGATTAATGAAATCTNACCGACCC-ACCCGGCTGGA-CCTTTTC-AAATCTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0105D02.1" temp_strand="-" temp_description="C09SLm0105D02.1  AC216404.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0105D02 upload_account_name:spain (1 - 136919)">
        <position start="110418" stop="109104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110118" g_stop="109404" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0105D02.1" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0105D02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110118" e_stop="109404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTC-TCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACTTGCAGGACGGACAGTCATAGCCATGACGGACCGTAACAATCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACATGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTT-TTCACTCAAAATCTCCGCATTAAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAATATTAACATAAAAAGGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGATGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATAACACAGACTCACCATGCACTAACACCTATCCTCTCCAATTTCTCACCGAGGTGCTAACAATTCCGGTATAGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAA-GGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0105D02-TLcF1/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0105D02.1" temp_strand="-" temp_description="C09SLm0105D02.1  AC216404.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0105D02 upload_account_name:spain (1 - 136919)">
        <position start="110410" stop="109430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110111" g_stop="109738" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0105D02.1" gen_strand="-" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0105D02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110111" e_stop="109738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACTTGCAGGACGGACAGTCATAGCCATGACGGACCGTAACAATCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACATGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCA-TTTTTCACTCAAAATCTCCGCATTAAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAATATTAACATAAAAAGGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACG</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAA-GGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="29708" PGL_stop="41086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39987" e_stop="40419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="39987" e_stop="40419" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39987" stop="40340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40085" stop="40419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAACAAACATTTTTTAAAAAATAAAAATTACATATTCAAAACTTGCTCAATTTCAAACTTTACTGTTGCATATATTAATTGCTTAATATTTGCAAATTTTGTCTATAACATAGCCTCGTATGTTAAATAAATAAAAAATAATCTTGATTGTTTATTATTGCTGTCACCTAGCCTCGCATGTTTAAATTAATAATATAGCCTGAATTGTTTTGTACTTCTTATCACTTAGCAAGCATATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCTACGCTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATTCTCTGGCTCGTTGACCTTAGTTAGACTTAATTAGGTTAGATAGGTGCCCT</gDNA_template>
            <first_frame> R  N  K  H  F  L  K  N  K  N  Y  I  F  K  T  C  S  I  S  N  F  T  V  A  Y  I  N  C  L  I  F  A  N  F  V  Y  N  I  A  S  Y  V  K  *  I  K  N  N  L  D  C  L  L  L  L  S  P  S  L  A  C  L  N  *  *  Y  S  L  N  C  F  V  L  L  I  T  *  Q  A  Y  *  *  I  I  M  K  *  P  *  L  L  L  V  T  P  T  *  I  A  *  D  T  A  G  T  Y  A  C  G  P  R  G  M  P  N  T  F  P  S  R  *  F  E  P  L  P  *  F  S  G  S  L  T  L  V  R  L  N  *  V  R  *  V  P  </first_frame>
            <second_frame>  E  T  N  I  F  *  K  I  K  I  T  Y  S  K  L  A  Q  F  Q  T  L  L  L  H  I  L  I  A  *  Y  L  Q  I  L  S  I  T  *  P  R  M  L  N  K  *  K  I  I  L  I  V  Y  Y  C  C  H  L  A  S  H  V  *  I  N  N  I  A  *  I  V  L  Y  F  L  S  L  S  K  H  I  N  E  *  *  *  S  D  L  D  C  Y  L  *  P  P  H  R  L  H  E  I  R  P  G  P  T  L  V  D  L  E  G  C  L  T  P  S  P  R  G  N  L  N  P  Y  P  N  S  L  A  R  *  P  *  L  D  L  I  R  L  D  R  C  P </second_frame>
            <third_frame>   K  Q  T  F  F  K  K  *  K  L  H  I  Q  N  L  L  N  F  K  L  Y  C  C  I  Y  *  L  L  N  I  C  K  F  C  L  *  H  S  L  V  C  *  I  N  K  K  *  S  *  L  F  I  I  A  V  T  *  P  R  M  F  K  L  I  I  *  P  E  L  F  C  T  S  Y  H  L  A  S  I  L  M  N  N  N  E  V  T  L  I  A  T  C  N  P  H  I  D  C  M  R  Y  G  R  D  L  R  L  W  T  S  R  D  A  *  H  L  P  L  E  V  I  *  T  L  T  L  I  L  W  L  V  D  L  S  *  T  *  L  G  *  I  G  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09SLm0105D02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29708" e_stop="29750"/>
            <exon e_start="29825" e_stop="30034"/>
            <exon e_start="30132" e_stop="30223"/>
            <exon e_start="30325" e_stop="30429"/>
            <exon e_start="40719" e_stop="41086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.963" e_score="0.884"/>
          <exon-intron don_prob="0.909" acc_prob="0.965" e_score="0.924"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="0.957"/>
          <exon-intron don_prob="0.000" acc_prob="0.988" e_score="0.962"/>
          <exon-only e_score="0.878"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="29708" e_stop="29750" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.963">
            <gDNA_intron_boundary i_start="29751" i_stop="29824" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="29825" e_stop="30034" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.965">
            <gDNA_intron_boundary i_start="30035" i_stop="30131" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="30132" e_stop="30223" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30224" i_stop="30324" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="30325" e_stop="30429" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="30430" i_stop="40718" i_length="10289"/>
          </intron>
          <exon e_serial="5" e_score="0.878">
            <gDNA_exon_boundary e_start="40719" e_stop="41086" e_length="368"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29708" stop="29750"/>
              <exon start="29825" stop="30034"/>
              <exon start="30132" stop="30223"/>
              <exon start="30325" stop="30429"/>
              <exon start="40719" stop="41086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTGCCAAATGATACTAAAAAGCGCATGTGAGAATACGTCAAT : TCAAAATTTCTACTTCCACTAGAAGGAAAGAAGTGGGTGATGACTGGTCTTCGTGATGCTTGGAGGCGACACAAGCAAAAAATTAAAAAGAATTTTTTTGATAAAAACAGTACCCTTGAGGATATGCTATCAAAATGTCTAGATGGCATTTCCACATAATCAATTCCGCCAATTGATCGAGTATTGGAAACACCCAAATGTTCAATTAAG : ATATATGCGAGATGAATTCTCAAAACAGGAAAAAACAAAAGTGGAGGCATCAAATGGGACCTATTAATATTGCTAAAGTACGCGTGGCATTG : CGTGCAGCCAAAGACAACAACGAAAAACCATCAAAGCCTGAAATATTTATTGCAACTCGTACCAAGATGGGAAAGTAAATCCAGGCTGATACCCAAATTGCAATA : GCTGAACATCAAAATCGCCAAAATTCTGGGGAAACACCTGATGATGCTTTTAGGGCAGTGTTTGGAAAGGAGCAGCCAGGTCGAGTTAGGTGCTATGGTAGATCAGTGACAACAAGTTCTTTGAAGAAAGATGAGGAAATTAACAATCTTAAACAAAAGCATGCCGATGAAATCACTACTCTAAAGGAAGAATGCGACATTTATTCACTCAATTGCTGCAAAACAACCCTGGATTGATTTTTCAAGATATACCAGGGTGTGTTGGATCTAAGCTTGCTTCACCTATTGATGCAAGTAGTGCACAAGCTGTAAGACGCACAAATCTTCCATTTTCTTCGGGGTCCGCTCAAGATTCGGTTCTTCAAAAG</gDNA_template>
            <first_frame> G  A  K  *  Y  *  K  A  H  V  R  I  R  Q   : F  K  I  S  T  S  T  R  R  K  E  V  G  D  D  W  S  S  *  C  L  E  A  T  Q  A  K  N  *  K  E  F  F  *  *  K  Q  Y  P  *  G  Y  A  I  K  M  S  R  W  H  F  H  I  I  N  S  A  N  *  S  S  I  G  N  T  Q  M  F  N  *   : D  I  C  E  M  N  S  Q  N  R  K  K  Q  K  W  R  H  Q  M  G  P  I  N  I  A  K  V  R  V  A  L  :  R  A  A  K  D  N  N  E  K  P  S  K  P  E  I  F  I  A  T  R  T  K  M  G  K  *  I  Q  A  D  T  Q  I  A  I  :  A  E  H  Q  N  R  Q  N  S  G  E  T  P  D  D  A  F  R  A  V  F  G  K  E  Q  P  G  R  V  R  C  Y  G  R  S  V  T  T  S  S  L  K  K  D  E  E  I  N  N  L  K  Q  K  H  A  D  E  I  T  T  L  K  E  E  C  D  I  Y  S  L  N  C  C  K  T  T  L  D  *  F  F  K  I  Y  Q  G  V  L  D  L  S  L  L  H  L  L  M  Q  V  V  H  K  L  *  D  A  Q  I  F  H  F  L  R  G  P  L  K  I  R  F  F  K   </first_frame>
            <second_frame>  V  P  N  D  T  K  K  R  M  *  E  Y  V  N  :  S  K  F  L  L  P  L  E  G  K  K  W  V  M  T  G  L  R  D  A  W  R  R  H  K  Q  K  I  K  K  N  F  F  D  K  N  S  T  L  E  D  M  L  S  K  C  L  D  G  I  S  T  *  S  I  P  P  I  D  R  V  L  E  T  P  K  C  S  I  K  :  I  Y  A  R  *  I  L  K  T  G  K  N  K  S  G  G  I  K  W  D  L  L  I  L  L  K  Y  A  W  H  C :   V  Q  P  K  T  T  T  K  N  H  Q  S  L  K  Y  L  L  Q  L  V  P  R  W  E  S  K  S  R  L  I  P  K  L  Q  * :   L  N  I  K  I  A  K  I  L  G  K  H  L  M  M  L  L  G  Q  C  L  E  R  S  S  Q  V  E  L  G  A  M  V  D  Q  *  Q  Q  V  L  *  R  K  M  R  K  L  T  I  L  N  K  S  M  P  M  K  S  L  L  *  R  K  N  A  T  F  I  H  S  I  A  A  K  Q  P  W  I  D  F  S  R  Y  T  R  V  C  W  I  *  A  C  F  T  Y  *  C  K  *  C  T  S  C  K  T  H  K  S  S  I  F  F  G  V  R  S  R  F  G  S  S  K  </second_frame>
            <third_frame>   C  Q  M  I  L  K  S  A  C  E  N  T  S  I :   Q  N  F  Y  F  H  *  K  E  R  S  G  *  *  L  V  F  V  M  L  G  G  D  T  S  K  K  L  K  R  I  F  L  I  K  T  V  P  L  R  I  C  Y  Q  N  V  *  M  A  F  P  H  N  Q  F  R  Q  L  I  E  Y  W  K  H  P  N  V  Q  L  R :   Y  M  R  D  E  F  S  K  Q  E  K  T  K  V  E  A  S  N  G  T  Y  *  Y  C  *  S  T  R  G  I   : A  C  S  Q  R  Q  Q  R  K  T  I  K  A  *  N  I  Y  C  N  S  Y  Q  D  G  K  V  N  P  G  *  Y  P  N  C  N   : S  *  T  S  K  S  P  K  F  W  G  N  T  *  *  C  F  *  G  S  V  W  K  G  A  A  R  S  S  *  V  L  W  *  I  S  D  N  K  F  F  E  E  R  *  G  N  *  Q  S  *  T  K  A  C  R  *  N  H  Y  S  K  G  R  M  R  H  L  F  T  Q  L  L  Q  N  N  P  G  L  I  F  Q  D  I  P  G  C  V  G  S  K  L  A  S  P  I  D  A  S  S  A  Q  A  V  R  R  T  N  L  P  F  S  S  G  S  A  Q  D  S  V  L  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30403" stop="30429"/>
                    <exon start="40719" stop="40955"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQADTQIAIAEHQNRQNSGETPDDAFRAVFGKEQPGRVRCYGRSVTTSSLKKDEEINNLKQKHADEITTLKEECDIYSLNCCKTTLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40889" stop="41086"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHYSKGRMRHLFTQLLQNNPGLIFQDIPGCVGSKLASPIDASSAQAVRRTNLPFSSGSAQDSVLQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="97664" PGL_stop="97146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97664" e_stop="97146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="97664" e_stop="97146" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97664" stop="97146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAATCTGCCAAAACGCGGTTGGGTCGACGGACCACGCGAGGAACCGTCGTGAACTCCGTCGTCCCATACTTGGTGCAATTCTTCTGGTGCTTTCTTCATTCCCCTCGACAGCAAGTGGGACAGACCGTCATAGGCACAACGGTCCATCGAGGGTCTCGTTTAAAAATACTTCAACTCTTGGAATCTGGGTATTGGGATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGCACCGTCATAGCCATGACGGACCATCACAATCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTACCACCTACGGACCGTCACATGCACGATGGACCGTCATATGCTCCGTAGGTGGTCTCTTCTGCATTTTTCACTCAAAATCTCCGCATTAAGCTTTGGACAGATTTCCTACAAAACAAAGAGAAACTTATATCAAAATTAGCACAAAAAGGGCTTTCAGACACACTAAACTTAAGGAAAAAGTAATAATTATACC</gDNA_template>
            <first_frame> G  N  L  P  K  R  G  W  V  D  G  P  R  E  E  P  S  *  T  P  S  S  H  T  W  C  N  S  S  G  A  F  F  I  P  L  D  S  K  W  D  R  P  S  *  A  Q  R  S  I  E  G  L  V  *  K  Y  F  N  S  W  N  L  G  I  G  I  T  S  L  I  F  T  T  N  L  Q  D  A  P  S  *  P  *  R  T  I  T  I  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  S  L  R  Y  H  L  R  T  V  T  C  T  M  D  R  H  M  L  R  R  W  S  L  L  H  F  S  L  K  I  S  A  L  S  F  G  Q  I  S  Y  K  T  K  R  N  L  Y  Q  N  *  H  K  K  G  F  Q  T  H  *  T  *  G  K  S  N  N  Y  T </first_frame>
            <second_frame>  E  I  C  Q  N  A  V  G  S  T  D  H  A  R  N  R  R  E  L  R  R  P  I  L  G  A  I  L  L  V  L  S  S  F  P  S  T  A  S  G  T  D  R  H  R  H  N  G  P  S  R  V  S  F  K  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  S  S  R  R  T  C  R  T  H  R  H  S  H  D  G  P  S  Q  S  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  A  T  T  Y  G  P  S  H  A  R  W  T  V  I  C  S  V  G  G  L  F  C  I  F  H  S  K  S  P  H  *  A  L  D  R  F  P  T  K  Q  R  E  T  Y  I  K  I  S  T  K  R  A  F  R  H  T  K  L  K  E  K  V  I  I  I   </second_frame>
            <third_frame>   K  S  A  K  T  R  L  G  R  R  T  T  R  G  T  V  V  N  S  V  V  P  Y  L  V  Q  F  F  W  C  F  L  H  S  P  R  Q  Q  V  G  Q  T  V  I  G  T  T  V  H  R  G  S  R  L  K  I  L  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  H  D  E  P  A  G  R  T  V  I  A  M  T  D  H  H  N  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  S  T  L  P  P  T  D  R  H  M  H  D  G  P  S  Y  A  P  *  V  V  S  S  A  F  F  T  Q  N  L  R  I  K  L  W  T  D  F  L  Q  N  K  E  K  L  I  S  K  L  A  Q  K  G  L  S  D  T  L  N  L  R  K  K  *  *  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97662" stop="97291"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSAKTRLGRRTTRGTVVNSVVPYLVQFFWCFLHSPRQQVGQTVIGTTVHRGSRLKILQLLESGYWDHFSDLHDEPAGRTVIAMTDHHNLRNPTLGQTSPSSFSSFSTLPPTDRHMHDGPSYAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="102762" PGL_stop="102029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102762" e_stop="102029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="102762" e_stop="102029" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102762" stop="102029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577717" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACTATAACTCAAGTACCTAGCAAATAGGAGCGAAATTTCTCAAAAGCAAAGACTACTGCGAGGAGTTCTTGCTCAGTCACTGTGTAGTTCTTCTGGGCTTCATTTAGGGCTTTACTAGCATAGTAAATTGGGTGAAGGATTTTGTTTCTTCTCTGTCCCAATACTATACCAAGAGCCACCCCACTAGCATCACACATTACCTCAAATGGACTGTTCCAATACGGAGAAATAATGATAGGCGCAGATACTAACTTTTCTTTTAGCTCACCGAATGCTTTAAGACAGGATTCATCAAAGCAAAATTTACATTCATTCTCCAGCAATTTGCACAATGGGTGTGCAATCTTTGAAAAGTCTTTGATGAATCTCTGATAAAAACCTGCATGCCCAAGAAAGCTTCTCACACCTTTCACAGAGATCGGCGGGGGAAGTCTCTCTATTACCTCAACTTTAGCTCGATCAATTTCTATGCCCTTTTCTGAAATGCGATGACCCAACACAATACCCTCTTTCACCATGAAATGACACTTTTCCCAGTTTAGTACCAAATTGCAGTCATCACATCTCTTAAGAACCTCAGATAAATTGGTCAAACACCGCTCGAATGAATCACCAACCACAGAAAAATCATCCATAAAAACCTCTATAGTATCCTCCACCATGTCAGAAAATATTGACATCATACATCTCTGAAAGGTTGCGGGTGCATTGCACAACCCAAATGACATTCTTC</gDNA_template>
            <first_frame> H  Y  N  S  S  T  *  Q  I  G  A  K  F  L  K  S  K  D  Y  C  E  E  F  L  L  S  H  C  V  V  L  L  G  F  I  *  G  F  T  S  I  V  N  W  V  K  D  F  V  S  S  L  S  Q  Y  Y  T  K  S  H  P  T  S  I  T  H  Y  L  K  W  T  V  P  I  R  R  N  N  D  R  R  R  Y  *  L  F  F  *  L  T  E  C  F  K  T  G  F  I  K  A  K  F  T  F  I  L  Q  Q  F  A  Q  W  V  C  N  L  *  K  V  F  D  E  S  L  I  K  T  C  M  P  K  K  A  S  H  T  F  H  R  D  R  R  G  K  S  L  Y  Y  L  N  F  S  S  I  N  F  Y  A  L  F  *  N  A  M  T  Q  H  N  T  L  F  H  H  E  M  T  L  F  P  V  *  Y  Q  I  A  V  I  T  S  L  K  N  L  R  *  I  G  Q  T  P  L  E  *  I  T  N  H  R  K  I  I  H  K  N  L  Y  S  I  L  H  H  V  R  K  Y  *  H  H  T  S  L  K  G  C  G  C  I  A  Q  P  K  *  H  S   </first_frame>
            <second_frame>  T  I  T  Q  V  P  S  K  *  E  R  N  F  S  K  A  K  T  T  A  R  S  S  C  S  V  T  V  *  F  F  W  A  S  F  R  A  L  L  A  *  *  I  G  *  R  I  L  F  L  L  C  P  N  T  I  P  R  A  T  P  L  A  S  H  I  T  S  N  G  L  F  Q  Y  G  E  I  M  I  G  A  D  T  N  F  S  F  S  S  P  N  A  L  R  Q  D  S  S  K  Q  N  L  H  S  F  S  S  N  L  H  N  G  C  A  I  F  E  K  S  L  M  N  L  *  *  K  P  A  C  P  R  K  L  L  T  P  F  T  E  I  G  G  G  S  L  S  I  T  S  T  L  A  R  S  I  S  M  P  F  S  E  M  R  *  P  N  T  I  P  S  F  T  M  K  *  H  F  S  Q  F  S  T  K  L  Q  S  S  H  L  L  R  T  S  D  K  L  V  K  H  R  S  N  E  S  P  T  T  E  K  S  S  I  K  T  S  I  V  S  S  T  M  S  E  N  I  D  I  I  H  L  *  K  V  A  G  A  L  H  N  P  N  D  I  L  </second_frame>
            <third_frame>   L  *  L  K  Y  L  A  N  R  S  E  I  S  Q  K  Q  R  L  L  R  G  V  L  A  Q  S  L  C  S  S  S  G  L  H  L  G  L  Y  *  H  S  K  L  G  E  G  F  C  F  F  S  V  P  I  L  Y  Q  E  P  P  H  *  H  H  T  L  P  Q  M  D  C  S  N  T  E  K  *  *  *  A  Q  I  L  T  F  L  L  A  H  R  M  L  *  D  R  I  H  Q  S  K  I  Y  I  H  S  P  A  I  C  T  M  G  V  Q  S  L  K  S  L  *  *  I  S  D  K  N  L  H  A  Q  E  S  F  S  H  L  S  Q  R  S  A  G  E  V  S  L  L  P  Q  L  *  L  D  Q  F  L  C  P  F  L  K  C  D  D  P  T  Q  Y  P  L  S  P  *  N  D  T  F  P  S  L  V  P  N  C  S  H  H  I  S  *  E  P  Q  I  N  W  S  N  T  A  R  M  N  H  Q  P  Q  K  N  H  P  *  K  P  L  *  Y  P  P  P  C  Q  K  I  L  T  S  Y  I  S  E  R  L  R  V  H  C  T  T  Q  M  T  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102626" stop="102390"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RILFLLCPNTIPRATPLASHITSNGLFQYGEIMIGADTNFSFSSPNALRQDSSKQNLHSFSSNLHNGCAIFEKSLMNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="104069" PGL_stop="104682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104069" e_stop="104682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="104069" e_stop="104682" e_length="614"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104069" stop="104682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGGATTTTGTGCTTCTATTCAATTCCAGATTGCACTTGTTTCCAGGCAAACTCAAGTCCAAATGGACTGGTCCTTACACGGTTACCCAACTATTCCCTCATGGAGCAGTTGAGTTGGAAACTAAGGAGGGTGTGCGGTTCAAGGTCAATGGACAGCGCATAAAAATATATCTCGGGCATGCTGAATCGGCGAATGAAGTGATCGAGGCATACCATCTTGATGAAGTCTGAGTAATCAAGTGGCCCCAGTCGTGCCGCGACATTAAATCAGGCGCTTGTTGGGATGCAACCCAATACTTATATTCTTTTTAATAATGGTAGCATTTTTTCTATTAATGGGTTTTAAATTTGCAGGCACATCACCAGGAAATTCTGCAGAAAACTACTCCGCAGTAGCCACTGACGGATACAACGACGGACCATTGCGAATGCAACGGACCGTCGTATGCATCCGTCACACCAGGTACGTATTTCTGTCATTTTGAAATTAGGGCACGCACAACGGAACCTACGACGGGATGTCGCAAGTGCGACAGACCGTCGTCAGGGAACCGTCGCGCGATTAATGAAATCTACCCGACCCGACCCGGCTGGACCCTTTTCAAAATCTGACT</gDNA_template>
            <first_frame> G  D  F  V  L  L  F  N  S  R  L  H  L  F  P  G  K  L  K  S  K  W  T  G  P  Y  T  V  T  Q  L  F  P  H  G  A  V  E  L  E  T  K  E  G  V  R  F  K  V  N  G  Q  R  I  K  I  Y  L  G  H  A  E  S  A  N  E  V  I  E  A  Y  H  L  D  E  V  *  V  I  K  W  P  Q  S  C  R  D  I  K  S  G  A  C  W  D  A  T  Q  Y  L  Y  S  F  *  *  W  *  H  F  F  Y  *  W  V  L  N  L  Q  A  H  H  Q  E  I  L  Q  K  T  T  P  Q  *  P  L  T  D  T  T  T  D  H  C  E  C  N  G  P  S  Y  A  S  V  T  P  G  T  Y  F  C  H  F  E  I  R  A  R  T  T  E  P  T  T  G  C  R  K  C  D  R  P  S  S  G  N  R  R  A  I  N  E  I  Y  P  T  R  P  G  W  T  L  F  K  I  *   </first_frame>
            <second_frame>  G  I  L  C  F  Y  S  I  P  D  C  T  C  F  Q  A  N  S  S  P  N  G  L  V  L  T  R  L  P  N  Y  S  L  M  E  Q  L  S  W  K  L  R  R  V  C  G  S  R  S  M  D  S  A  *  K  Y  I  S  G  M  L  N  R  R  M  K  *  S  R  H  T  I  L  M  K  S  E  *  S  S  G  P  S  R  A  A  T  L  N  Q  A  L  V  G  M  Q  P  N  T  Y  I  L  F  N  N  G  S  I  F  S  I  N  G  F  *  I  C  R  H  I  T  R  K  F  C  R  K  L  L  R  S  S  H  *  R  I  Q  R  R  T  I  A  N  A  T  D  R  R  M  H  P  S  H  Q  V  R  I  S  V  I  L  K  L  G  H  A  Q  R  N  L  R  R  D  V  A  S  A  T  D  R  R  Q  G  T  V  A  R  L  M  K  S  T  R  P  D  P  A  G  P  F  S  K  S  D  </second_frame>
            <third_frame>   G  F  C  A  S  I  Q  F  Q  I  A  L  V  S  R  Q  T  Q  V  Q  M  D  W  S  L  H  G  Y  P  T  I  P  S  W  S  S  *  V  G  N  *  G  G  C  A  V  Q  G  Q  W  T  A  H  K  N  I  S  R  A  C  *  I  G  E  *  S  D  R  G  I  P  S  *  *  S  L  S  N  Q  V  A  P  V  V  P  R  H  *  I  R  R  L  L  G  C  N  P  I  L  I  F  F  L  I  M  V  A  F  F  L  L  M  G  F  K  F  A  G  T  S  P  G  N  S  A  E  N  Y  S  A  V  A  T  D  G  Y  N  D  G  P  L  R  M  Q  R  T  V  V  C  I  R  H  T  R  Y  V  F  L  S  F  *  N  *  G  T  H  N  G  T  Y  D  G  M  S  Q  V  R  Q  T  V  V  R  E  P  S  R  D  *  *  N  L  P  D  P  T  R  L  D  P  F  Q  N  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104069" stop="104299"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDFVLLFNSRLHLFPGKLKSKWTGPYTVTQLFPHGAVELETKEGVRFKVNGQRIKIYLGHAESANEVIEAYHLDEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104335" stop="104553"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRRLLGCNPILIFFLIMVAFFLLMGFKFAGTSPGNSAENYSAVATDGYNDGPLRMQRTVVCIRHTRYVFLSF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104465" stop="104680"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLTDTTTDHCECNGPSYASVTPGTYFCHFEIRARTTEPTTGCRKCDRPSSGNRRAINEIYPTRPGWTLFKI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104472" stop="104681"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIQRRTIANATDRRMHPSHQVRISVILKLGHAQRNLRRDVASATDRRQGTVARLMKSTRPDPAGPFSKSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="110118" PGL_stop="109404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110118" e_stop="109404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="110118" e_stop="109404" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110118" stop="109404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110111" stop="109738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGGGTCTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGATCTTCACGACGAACTTGCAGGACGGACAGTCATAGCCATGACGGACCGTAACAATCTTCGTAATCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGACCGTCACATGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTTTCACTCAAAATCTCCGCATTAAGCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATCAATATTAACATAAAAAGGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGCGATGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAATTTTGTGGGATTCGAACATAACACAGACTCACCATGCACTAACACCTATCCTCTCCAATTTCTCACCGAGGTGCTAACAATTCCGGTATAGCAACTAGTGTCCTCACTTTAGAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> R  G  S  R  F  K  I  L  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  H  D  E  L  A  G  R  T  V  I  A  M  T  D  R  N  N  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  F  S  T  L  P  P  T  D  R  H  M  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  T  Q  N  L  R  I  K  L  W  T  D  F  L  Q  N  K  E  K  L  I  S  I  L  T  *  K  G  L  L  D  T  L  N  L  R  K  K  Y  *  L  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  A  M  H  Y  D  S  L  H  N  L  C  T  I  V  F  M  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  F  V  G  F  E  H  N  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  V  *  Q  L  V  S  S  L  *  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  L  </first_frame>
            <second_frame>  E  G  L  V  S  K  Y  F  N  S  W  N  L  G  T  G  I  T  S  L  I  F  T  T  N  L  Q  D  G  Q  S  *  P  *  R  T  V  T  I  F  V  I  P  H  L  V  R  L  P  H  L  P  S  A  A  S  L  R  C  H  L  R  T  V  T  C  T  T  D  R  H  K  L  R  R  W  S  L  L  H  F  S  L  K  I  S  A  L  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  Q  Y  *  H  K  K  G  F  W  T  H  *  T  *  G  K  S  I  N  Y  T  V  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  R  C  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  I  L  W  D  S  N  I  T  Q  T  H  H  A  L  T  P  I  L  S  N  F  S  P  R  C  *  Q  F  R  Y  S  N  *  C  P  H  F  R  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  Y </second_frame>
            <third_frame>   R  V  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  S  S  R  R  T  C  R  T  D  S  H  S  H  D  G  P  *  Q  S  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  L  Y  A  A  T  Y  G  P  S  H  A  R  R  T  V  I  S  S  V  G  G  L  F  C  I  F  H  S  K  S  P  H  *  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  N  I  N  I  K  R  A  F  G  H  T  K  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  F  C  G  I  R  T  *  H  R  L  T  M  H  *  H  L  S  S  P  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  L  E  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109755" stop="109477"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYRETTVYQHPQLKFVVCPQAMHYDSLHNLCTIVFMFYPLQSFGYQSRLISSNLCMLSLLGLNFVGFEHNTDSPCTNTYPLQFLTEVLTIPV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110118" stop="109903"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGSRFKILQLLESGYWDHFSDLHDELAGRTVIAMTDRNNLRNPTLGQTSPSSFSSFSTLPPTDRHMHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0105D02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110015" stop="109803"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTVTIFVIPHLVRLPHLPSAASLRCHLRTVTCTTDRHKLRRWSLLHFSLKISALSFGQISCKTKRNLYQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 181 chains have been computed
$ 
$ memory statistics:
$ 17328 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2166 bytes was the average size of a spliced alignment
$ 10448 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2089 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 217 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 06:02:36
-->
