<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-29 14:43:24"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704737" ref_strand="+" ref_description="SGN-E704737 [FA25AE03]">
      <seq>aagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaatctcatccaagatgttaattctctctgtgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156010" stop="154631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155710" g_stop="155596" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154931" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="680" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E704737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155710" e_stop="155596"/>
          <exon e_start="155495" e_stop="154931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAAA</genome_strand>
        <mrna_strand>AAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244022" ref_strand="+" ref_description="SGN-E244022 [cLEE-1-I6]">
      <seq>acaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaatctcatccaagatgttaattctctctgtgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="155707" stop="154631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155407" g_stop="154931" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E244022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155407" e_stop="154931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAAA</genome_strand>
        <mrna_strand>ACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713093" ref_strand="+" ref_description="SGN-E713093 [FB06CG11]">
      <seq>ctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaatctcatccaagaatgttattctctctgtgcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156959" stop="154631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156659" g_stop="156339" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155854" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="525" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155853" i_stop="155274" i_length="580">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155273" g_stop="154932" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="867" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E713093" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156659" e_stop="156339"/>
          <exon e_start="156057" e_stop="155854"/>
          <exon e_start="155273" e_stop="154932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</genome_strand>
        <mrna_strand>CTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGAATGTTATTCTCTCTGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712665" ref_strand="+" ref_description="SGN-E712665 [FB05BH11]">
      <seq>ctcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaatctcatccaagatgttaattctctctgtgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156014" stop="154631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155714" g_stop="155596" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154932" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="683" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="684" polyA_stop="695"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E712665" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155714" e_stop="155596"/>
          <exon e_start="155495" e_stop="154932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</genome_strand>
        <mrna_strand>CTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716797" ref_strand="+" ref_description="SGN-E716797 [FB18AC05]">
      <seq>atctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaatctcatccaagatgttaattctctctgtgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="155997" stop="154631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155697" g_stop="155596" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154932" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="666" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="676"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E716797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155697" e_stop="155596"/>
          <exon e_start="155495" e_stop="154932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</genome_strand>
        <mrna_strand>ATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713405" ref_strand="+" ref_description="SGN-E713405 [FB08CB10]">
      <seq>tggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaatctcatccaagatgttaattctctctgtgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="155930" stop="154631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155630" g_stop="155596" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154932" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="599" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="612"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E713405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155630" e_stop="155596"/>
          <exon e_start="155495" e_stop="154932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</genome_strand>
        <mrna_strand>TGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715439" ref_strand="+" ref_description="SGN-E715439 [FB14BB06]">
      <seq>aggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaatctcatccaagatgttaattctctctgtgcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="155670" stop="154631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155370" g_stop="154932" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="450"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E715439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155370" e_stop="154932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</genome_strand>
        <mrna_strand>AGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706925" ref_strand="+" ref_description="SGN-E706925 [FA31CC08]">
      <seq>catggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaatctcatccaagatgttaattctctctgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156022" stop="154634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155722" g_stop="155596" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154934" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="689" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E706925" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155722" e_stop="155596"/>
          <exon e_start="155495" e_stop="154934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCA</genome_strand>
        <mrna_strand>CATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715782" ref_strand="+" ref_description="SGN-E715782 [FB15BA08]">
      <seq>agtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaatctcatccaagatgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156076" stop="154647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155776" g_stop="155596" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154948" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="729" r_length="548" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E715782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155776" e_stop="155596"/>
          <exon e_start="155495" e_stop="154948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTA</genome_strand>
        <mrna_strand>AGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713483" ref_strand="+" ref_description="SGN-E713483 [FB08DA10]">
      <seq>ccatcgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156102" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155803" g_stop="155596" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154955" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="749" r_length="541" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E713483" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155803" e_stop="155596"/>
          <exon e_start="155495" e_stop="154955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAA</genome_strand>
        <mrna_strand>CCATCGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712935" ref_strand="+" ref_description="SGN-E712935 [FB06AH12]">
      <seq>gcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="155729" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155429" g_stop="154955" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E712935" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155429" e_stop="154955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAA</genome_strand>
        <mrna_strand>GCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555774" ref_strand="-" ref_description="SGN-E555774 [cTSD-1-F7]">
      <seq>gcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156243" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155943" g_stop="155596" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154960" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="884" r_length="536" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555774" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555774" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="155943" e_stop="155596"/>
          <exon e_start="155495" e_stop="154960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCA</genome_strand>
        <mrna_strand>GCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557038" ref_strand="-" ref_description="SGN-E557038 [cTSD-2-P23]">
      <seq>gcgatggtgggcaagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156091" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155791" g_stop="155596" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154960" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="733" r_length="536" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E557038" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557038" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="155791" e_stop="155596"/>
          <exon e_start="155495" e_stop="154960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATGGTGGGC-AGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCA</genome_strand>
        <mrna_strand>GCGATGGTGGGCAAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555901" ref_strand="+" ref_description="SGN-E555901 [cTSD-1-M15]">
      <seq>gcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156044" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155744" g_stop="155596" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154961" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="684" r_length="535" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555901" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155744" e_stop="155596"/>
          <exon e_start="155495" e_stop="154961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTC</genome_strand>
        <mrna_strand>GCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553785" ref_strand="-" ref_description="SGN-E553785 [cTSC-2-D22]">
      <seq>ggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156086" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155786" g_stop="155596" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154962" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="725" r_length="534" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553785" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553785" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="155786" e_stop="155596"/>
          <exon e_start="155495" e_stop="154962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCT</genome_strand>
        <mrna_strand>GGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553465" ref_strand="+" ref_description="SGN-E553465 [cTSC-1-D15]">
      <seq>agaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="155712" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155412" g_stop="154962" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553465" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155412" e_stop="154962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCT</genome_strand>
        <mrna_strand>AGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701332" ref_strand="+" ref_description="SGN-E701332 [FA15CF12]">
      <seq>gcttttacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttangcaaagatgaagcaagagcgacttgtatttaggaacaaataatgtaacgaataaagctcctgcctttttgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156264" stop="154671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155964" g_stop="155596" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154964" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="900" r_length="532" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701332" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155964" e_stop="155596"/>
          <exon e_start="155495" e_stop="154964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAAT</genome_strand>
        <mrna_strand>GCTTTT-ACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTANGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAACAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553590" ref_strand="+" ref_description="SGN-E553590 [cTSC-1-J20]">
      <seq>taattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156176" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155876" g_stop="155596" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154964" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="813" r_length="532" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553590" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155876" e_stop="155596"/>
          <exon e_start="155495" e_stop="154964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAAT</genome_strand>
        <mrna_strand>TAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553515" ref_strand="-" ref_description="SGN-E553515 [cTSC-1-F4]">
      <seq>ggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156209" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155909" g_stop="155596" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154965" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="845" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553515" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553515" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="155909" e_stop="155596"/>
          <exon e_start="155495" e_stop="154965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAA</genome_strand>
        <mrna_strand>GGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554860" ref_strand="+" ref_description="SGN-E554860 [cTSC-5-K17]">
      <seq>cagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaaaaaaaaataagttgagaatatatacgttttgttaatcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156163" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155863" g_stop="155596" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154966" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="798" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="799" polyA_stop="812"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155863" e_stop="155596"/>
          <exon e_start="155495" e_stop="154966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</genome_strand>
        <mrna_strand>CAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711537" ref_strand="+" ref_description="SGN-E711537 [FB02BB03]">
      <seq>ctggaaatggctccgaaaaaaacatttgcacaatgaaaatccgcaccaacatggacactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156071" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155771" g_stop="155596" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154966" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="706" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="716"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E711537" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155771" e_stop="155596"/>
          <exon e_start="155495" e_stop="154966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</genome_strand>
        <mrna_strand>CTGGAAATGGCTCCGAAAAAAACATTTGCACAATGAAAATCCGCACCAACATGGACACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554950" ref_strand="+" ref_description="SGN-E554950 [cTSC-5-O8]">
      <seq>gcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtaggccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaattatttaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtattttagagcaaataatgtaactgaataaagctcctgcctttttgtacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156044" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155744" g_stop="155596" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154966" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="680" r_length="531" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554950" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155744" e_stop="155596"/>
          <exon e_start="155495" e_stop="154966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAAC-GAATAAAGCTCCTGCCTTTTTGTACCTAA</genome_strand>
        <mrna_strand>GCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGGCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAATTATTTAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTTAGAGCAAATAATGTAACTGAATAAAGCTCCTGCCTTTTTGTACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556208" ref_strand="+" ref_description="SGN-E556208 [cTSD-2-L8]">
      <seq>gcacaatgaagatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacggactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtacaccacaccgggcaacaagtgatgaatgacagggtaaatcgaggagaaatgtttgtagtccctcagtacgtatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggcgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtacctgatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156044" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155744" g_stop="155596" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154966" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="680" r_length="531" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="712"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E556208" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155744" e_stop="155596"/>
          <exon e_start="155495" e_stop="154966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTAC-TATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</genome_strand>
        <mrna_strand>GCACAATGAAGATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGGACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTACACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCGAGGAGAAATGTTTGTAGTCCCTCAGTACGTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGCGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCTGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555917" ref_strand="+" ref_description="SGN-E555917 [cTSD-1-N10]">
      <seq>gcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaananaaaaaaaaaaaaaaaaaaaatcaaggggggggcgggaaccaaattaaacctatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156044" stop="154666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155744" g_stop="155596" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154966" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="679" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="688" polyA_stop="703"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155744" e_stop="155596"/>
          <exon e_start="155495" e_stop="154966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</genome_strand>
        <mrna_strand>GCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711536" ref_strand="+" ref_description="SGN-E711536 [FB02BB02]">
      <seq>ccattattagagacatggacatgagtgcctctaaaggaaccccatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="155945" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155645" g_stop="155596" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154966" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="580" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="593"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E711536" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155645" e_stop="155596"/>
          <exon e_start="155495" e_stop="154966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</genome_strand>
        <mrna_strand>CCATTATTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCCATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241750" ref_strand="+" ref_description="SGN-E241750 [cLEE-10-I19]">
      <seq>agcgtgatcttcgtgcattagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaaaagaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="155738" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155456" g_stop="154966" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="505"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E241750" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155456" e_stop="154966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTGATCTACGTGCA-AAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</genome_strand>
        <mrna_strand>AGCGTGATCTTCGTGCATTAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244077" ref_strand="+" ref_description="SGN-E244077 [cLEE-1-L16]">
      <seq>gacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacctaaaaaaaaaaaaaaaaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="155684" stop="154665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155384" g_stop="154966" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="440"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E244077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155384" e_stop="154966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</genome_strand>
        <mrna_strand>GACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243997" ref_strand="+" ref_description="SGN-E243997 [cLEE-1-M15]">
      <seq>tagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgttccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="155716" stop="154667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155416" g_stop="154967" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E243997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155416" e_stop="154967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTA</genome_strand>
        <mrna_strand>TAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555717" ref_strand="+" ref_description="SGN-E555717 [cTSD-1-D10]">
      <seq>cagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156163" stop="154668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155863" g_stop="155596" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154968" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="796" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155863" e_stop="155596"/>
          <exon e_start="155495" e_stop="154968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCT</genome_strand>
        <mrna_strand>CAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556865" ref_strand="+" ref_description="SGN-E556865 [cTSD-4-N2]">
      <seq>cagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156163" stop="154670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155863" g_stop="155596" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154970" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="794" r_length="526" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E556865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155863" e_stop="155596"/>
          <exon e_start="155495" e_stop="154970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTAC</genome_strand>
        <mrna_strand>CAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715479" ref_strand="+" ref_description="SGN-E715479 [FB14BF04]">
      <seq>gaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttangagcaaataatgtaacgaataaagctcctgcctttttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156198" stop="154671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155898" g_stop="155596" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154971" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="828" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E715479" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155898" e_stop="155596"/>
          <exon e_start="155495" e_stop="154971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTA</genome_strand>
        <mrna_strand>GAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTANGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554859" ref_strand="+" ref_description="SGN-E554859 [cTSC-5-K16]">
      <seq>ggaaggatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatggtacgaataaagctcctgcctttttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156160" stop="154671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155860" g_stop="155596" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154971" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="790" r_length="526" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554859" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155860" e_stop="155596"/>
          <exon e_start="155495" e_stop="154971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAG-AAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTA</genome_strand>
        <mrna_strand>GGAAGG-ATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGGTACGAATAAAGCTCCTGCCTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553478" ref_strand="-" ref_description="SGN-E553478 [cTSC-1-D7]">
      <seq>aagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagatgttagggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156300" stop="154672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156000" g_stop="155596" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154972" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="929" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553478" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>929</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553478" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="156000" e_stop="155596"/>
          <exon e_start="155495" e_stop="154972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTA-GGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGT</genome_strand>
        <mrna_strand>AAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGA-TGTTAGGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555758" ref_strand="+" ref_description="SGN-E555758 [cTSD-1-F11]">
      <seq>cagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156163" stop="154673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155863" g_stop="155596" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154973" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="791" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155863" e_stop="155596"/>
          <exon e_start="155495" e_stop="154973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTG</genome_strand>
        <mrna_strand>CAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556091" ref_strand="+" ref_description="SGN-E556091 [cTSD-2-G11]">
      <seq>cagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156163" stop="154673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155863" g_stop="155596" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154973" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="791" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E556091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155863" e_stop="155596"/>
          <exon e_start="155495" e_stop="154973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTG</genome_strand>
        <mrna_strand>CAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712229" ref_strand="+" ref_description="SGN-E712229 [FB04BB01]">
      <seq>acaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctttttgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156103" stop="154671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155803" g_stop="155596" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154974" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="730" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="751"/>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E712229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155803" e_stop="155596"/>
          <exon e_start="155495" e_stop="154974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTT</genome_strand>
        <mrna_strand>ACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555424" ref_strand="-" ref_description="SGN-E555424 [cTSC-3-D22]">
      <seq>ggtgggcagaagtaactggaaatggcttggaagaaaacatatgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctatgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactaagcctcaacagtgaaagcagggcaaaatggattagaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatattgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcgtagtagtacaagtttatagtctttgtttttaggcaacgcatgaagcaagaagcgacttgtatttaggagcaaataatgtagcgaataaagctacctgccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156086" stop="154676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155786" g_stop="155596" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154976" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="714" r_length="523" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555424" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555424" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="155786" e_stop="155596"/>
          <exon e_start="155495" e_stop="154976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAG-ATGAAGCAAG-AGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCT-CCTGCCTTT</genome_strand>
        <mrna_strand>GGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATATGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTATGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTAAGCCTCAACAGTGAAAGCAGGGCAAAATGGATTAGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATTGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCGTAGTAGTACAAGTTTATAGTCTTTGTTTTTAGGCAACGCATGAAGCAAGAAGCGACTTGTATTTAGGAGCAAATAATGTAGCGAATAAAGCTACCTGCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554963" ref_strand="+" ref_description="SGN-E554963 [cTSC-5-P22]">
      <seq>gcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaagcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagctcctgcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156044" stop="154677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155744" g_stop="155596" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154977" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="668" r_length="519" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554963" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155744" e_stop="155596"/>
          <exon e_start="155495" e_stop="154977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTT</genome_strand>
        <mrna_strand>GCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAAGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701004" ref_strand="+" ref_description="SGN-E701004 [FA14DA11]">
      <seq>cagaagttccagaacattttccgtgcttttacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttaggagcaaataatgtaacgaataaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156288" stop="154685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155988" g_stop="155596" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154985" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="903" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701004" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155988" e_stop="155596"/>
          <exon e_start="155495" e_stop="154985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCT</genome_strand>
        <mrna_strand>CAGAAGTTCCAGAACATTTTCCGTGCTTTT-ACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554676" ref_strand="+" ref_description="SGN-E554676 [cTSC-5-B10]">
      <seq>aagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagncagagcgacttgtatttaggagcaaaatatgtaacgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156300" stop="154691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156000" g_stop="155596" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="154991" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="910" r_length="505" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554676" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156000" e_stop="155596"/>
          <exon e_start="155495" e_stop="154991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAAT</genome_strand>
        <mrna_strand>AAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGNCAGAGCGACTTGTATTTAGGAGCAAAATATGTAACGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707452" ref_strand="+" ref_description="SGN-E707452 [FA33AB11]">
      <seq>cgtcctaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagttatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatctcaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaaagatgaagcaagagcgacttgtatttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156244" stop="154710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155945" g_stop="155596" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="155010" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="836" r_length="486" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E707452" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155945" e_stop="155596"/>
          <exon e_start="155495" e_stop="155010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGG</genome_strand>
        <mrna_strand>CGTCCTAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGTTATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCTCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555047" ref_strand="+" ref_description="SGN-E555047 [cTSC-6-E1]">
      <seq>gatggctcaaggcttcagcctccccgccagatctcgctatgaggatgcaagaataactgaacgagcgcgtactttttgataatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttgtttttaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156218" stop="154739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155947" g_stop="155596" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="155039" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="810" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555047" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155947" e_stop="155596"/>
          <exon e_start="155495" e_stop="155039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCAGAGGCCTTCAACATCCCCG-TAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAA</genome_strand>
        <mrna_strand>GATGGCTCAAGGCTTCAGCCTCCCCGCCAGATCTCGCTATGAGGATGCAAGAATAACTGAACGAGCGCGTACTTTTTGATAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705109" ref_strand="+" ref_description="SGN-E705109 [FA26AG07]">
      <seq>agaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagagggagagaaagcttcctgctatctccccagagaaggtcattctanaatggctttaatgtgtaataatcccacctggctatcgcctagtagtacaagtttctagtctttgttttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156366" stop="154742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156349" g_stop="156339" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="473" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155042" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="925" r_length="452" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E705109" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156349" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGG</genome_strand>
        <mrna_strand>AGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGGAGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTANAATGGCTTTAATGTGTAATAATCCCACC-TGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTG-TTTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707897" ref_strand="+" ref_description="SGN-E707897 [FA34BB03]">
      <seq>ctttagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156362" stop="154750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156345" g_stop="156339" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="469" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155050" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="915" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E707897" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156345" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTG</genome_strand>
        <mrna_strand>CTTTAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556240" ref_strand="+" ref_description="SGN-E556240 [cTSD-2-N21]">
      <seq>ccccgggctgcggattcggcacgagggtgcttttacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggagggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctatcgcctagtagtacaagtttctagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156266" stop="154754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155966" g_stop="155596" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="396" r_length="370" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="155054" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="839" r_length="443" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E556240" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155966" e_stop="155596"/>
          <exon e_start="155495" e_stop="155054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGA-GGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTC</genome_strand>
        <mrna_strand>GTGCTTTT-ACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708384" ref_strand="+" ref_description="SGN-E708384 [FA35CE02]">
      <seq>ctctaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156665" stop="154779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156366" g_stop="156339" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="490" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155079" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="907" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156366" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTAT</genome_strand>
        <mrna_strand>CTCTAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705133" ref_strand="+" ref_description="SGN-E705133 [FA26BA10]">
      <seq>cagtacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156366" stop="154779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156350" g_stop="156339" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="474" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155079" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="891" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E705133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156350" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTAT</genome_strand>
        <mrna_strand>CAGTACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710178" ref_strand="+" ref_description="SGN-E710178 [FA54CA08]">
      <seq>cgttttaggaaagcaaagcacacagaagttccagaacattttccgtgcttttacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatcccaccttggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156309" stop="154779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156010" g_stop="155596" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="155079" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="831" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E710178" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156010" e_stop="155596"/>
          <exon e_start="155495" e_stop="155079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTAT</genome_strand>
        <mrna_strand>CGTTTTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTT-ACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708958" ref_strand="+" ref_description="SGN-E708958 [FA42BA03]">
      <seq>cggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaatccgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccaaatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccccagagaaggtcattctaaaatggctttaatgtgtaataatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156343" stop="154790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156043" g_stop="155596" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="155090" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="854" r_length="406" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708958" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156043" e_stop="155596"/>
          <exon e_start="155495" e_stop="155090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCC</genome_strand>
        <mrna_strand>CGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATCCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAAATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703079" ref_strand="+" ref_description="SGN-E703079 [FA20CA05]">
      <seq>ggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgcccattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagagggagagaaagcttcctgctatctcccagagaaggtcattctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156708" stop="154815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156408" g_stop="156339" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="532" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155115" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="912" r_length="380" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E703079" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>913</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156408" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAA</genome_strand>
        <mrna_strand>GGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCCATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGGAGAGAAAGCTTCCTGCTATCT-CCCAGAGAAGGTCATTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710469" ref_strand="+" ref_description="SGN-E710469 [FA55CB03]">
      <seq>cgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156681" stop="154833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156381" g_stop="156339" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="505" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155133" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="868" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E710469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156381" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCC</genome_strand>
        <mrna_strand>CGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709572" ref_strand="+" ref_description="SGN-E709572 [FA52BH05]">
      <seq>cgcataacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgcccaatgaagcacaacgtttgaaaatgaacagaggaggagaaagcttcctgctatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156364" stop="154834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156352" g_stop="156339" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="476" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155134" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="838" r_length="362" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E709572" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156352" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCC</genome_strand>
        <mrna_strand>CGCATAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCCAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242370" ref_strand="+" ref_description="SGN-E242370 [cLEE-3-A16]">
      <seq>aactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgctaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacagaggaggagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156073" stop="154848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155773" g_stop="155596" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="155148" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="526" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E242370" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155773" e_stop="155596"/>
          <exon e_start="155495" e_stop="155148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGC</genome_strand>
        <mrna_strand>AACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCTAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555798" ref_strand="+" ref_description="SGN-E555798 [cTSD-1-H11]">
      <seq>gctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatgaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156743" stop="154860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156443" g_stop="156339" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="567" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155160" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="903" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156443" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGA</genome_strand>
        <mrna_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707177" ref_strand="+" ref_description="SGN-E707177 [FA32BB01]">
      <seq>caatgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156720" stop="154866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156420" g_stop="156339" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="544" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155166" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="874" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E707177" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156420" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATG</genome_strand>
        <mrna_strand>CAATGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710882" ref_strand="+" ref_description="SGN-E710882 [FA57BA01]">
      <seq>ccgatcttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcacaacgtttgaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156365" stop="154866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156350" g_stop="156339" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="474" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155166" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="804" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E710882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156350" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATG</genome_strand>
        <mrna_strand>CCGATCTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701451" ref_strand="+" ref_description="SGN-E701451 [FA16AA12]">
      <seq>ggagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccaaatatcgccaaatgaagcacaacgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156704" stop="154873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156405" g_stop="156339" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="529" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155173" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="852" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701451" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156405" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTT</genome_strand>
        <mrna_strand>GGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAAATATCGCCAAATGAAGCACAACGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555736" ref_strand="+" ref_description="SGN-E555736 [cTSD-1-E1]">
      <seq>gctggtgctgctcattggtgctacacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaattgaggtcctcacaaacgcgtaccagatatcgccaaatgaagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156743" stop="154879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156443" g_stop="156339" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="566" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155179" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="883" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555736" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156443" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACA</genome_strand>
        <mrna_strand>GCTGGTGCTGCTCATTGGTGCTAC-ACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701405" ref_strand="+" ref_description="SGN-E701405 [FA15DE07]">
      <seq>gccaatgcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcagggtacacatcagtgattagagcaatgccaattgaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156769" stop="154917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156469" g_stop="156339" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="593" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155217" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="872" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701405" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156469" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTC</genome_strand>
        <mrna_strand>GCCAATGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGGTACACATCAGTGATTAGAGCAATGCCAATTGAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555425" ref_strand="+" ref_description="SGN-E555425 [cTSC-3-D6]">
      <seq>ctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattagagcaatgccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156733" stop="154923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156433" g_stop="156339" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="557" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155223" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="830" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555425" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156433" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATT</genome_strand>
        <mrna_strand>CTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555580" ref_strand="+" ref_description="SGN-E555580 [cTSC-5-L15]">
      <seq>gctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagccaacttgcaggttacacatcagtgattaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156743" stop="154935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156443" g_stop="156339" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="567" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155235" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="828" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156443" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGA</genome_strand>
        <mrna_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706942" ref_strand="+" ref_description="SGN-E706942 [FA31CE02]">
      <seq>ggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtccaccaatgaacagccaacttgcaggttacacatcagtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156708" stop="154938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156408" g_stop="156339" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="532" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155238" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="790" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E706942" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156408" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATT</genome_strand>
        <mrna_strand>GGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCCACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704961" ref_strand="+" ref_description="SGN-E704961 [FA25DA12]">
      <seq>agctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttangacaagcagtcaaccaatgaacagccaacttgcaggttacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156744" stop="154946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156444" g_stop="156339" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="568" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155246" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="818" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E704961" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156444" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACAT</genome_strand>
        <mrna_strand>AGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTANGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703517" ref_strand="+" ref_description="SGN-E703517 [FA21CH08]">
      <seq>gaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaacagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156797" stop="154964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156497" g_stop="156339" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="621" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155264" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="853" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E703517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156497" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCC</genome_strand>
        <mrna_strand>GACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702000" ref_strand="+" ref_description="SGN-E702000 [FA17CB05]">
      <seq>ggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtcaaccaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156815" stop="154969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156515" g_stop="156339" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="639" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155269" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="866" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E702000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156515" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAA</genome_strand>
        <mrna_strand>GGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241765" ref_strand="+" ref_description="SGN-E241765 [cLEE-10-C1]">
      <seq>aaggcaaattggtgttggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatcaaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaatggatttgaattcgcggtgtttaggacaagcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156319" stop="154979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156019" g_stop="155596" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155495" g_stop="155279" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="641" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E241765" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156019" e_stop="155596"/>
          <exon e_start="155495" e_stop="155279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTC</genome_strand>
        <mrna_strand>AAGGCAAATTGGTGTTGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710113" ref_strand="+" ref_description="SGN-E710113 [FA54BA08]">
      <seq>ccgtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaatccaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaaagcagggcaaaatggatttgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156714" stop="155002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156414" g_stop="156339" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="538" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155302" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="733" r_length="195" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E710113" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156414" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTG-AAAGCAGGGCAAAATGGATTTGAATT</genome_strand>
        <mrna_strand>CCGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCCAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAAGCAGGGCAAAATGGATTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553539" ref_strand="+" ref_description="SGN-E553539 [cTSC-1-G8]">
      <seq>gattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtgatgaatgacagggtaaaatcaggagaaatgtttgtagtccctcagtactatgcctcaacagtgaaagcagggcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156901" stop="155013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156601" g_stop="156339" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="725" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155313" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="908" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553539" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156601" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAAT</genome_strand>
        <mrna_strand>GATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAAATCAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706886" ref_strand="+" ref_description="SGN-E706886 [FA31AH03]">
      <seq>ccgtttgaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggaccacagcgtgatctacgtgcaaagaggagatgcacaagtgccggtagtagaccacaccggggcaacagtgatgaatgacagggtaaatcaaggaaaaatgtttgtagtccctcagtactatgccctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156802" stop="155034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156507" g_stop="156339" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="632" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155334" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="796" r_length="164" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E706886" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156507" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCG-CGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGA-CACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATG-CCTCA</genome_strand>
        <mrna_strand>CCGTTTGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACCACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCCGGTAGTAGACCACACCGGGGCAACAGTGATGAATGACAGGGTAAATCAAGGAAAAATGTTTGTAGTCCCTCAGTACTATGCCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707808" ref_strand="+" ref_description="SGN-E707808 [FA34AB06]">
      <seq>ctctaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacacccgggcaacagtgatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156969" stop="155084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156670" g_stop="156339" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="794" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155384" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="906" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E707808" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156670" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACA-CCGGGCAACAAGTGATGAATG</genome_strand>
        <mrna_strand>CTCTAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCCGGGCAAC-AGTGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710135" ref_strand="+" ref_description="SGN-E710135 [FA54BD09]">
      <seq>ccgctttatcttgatcagaacttcagggcattctacttggccgccggagaacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccccgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttacagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagagaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaactagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156375" stop="155088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156365" g_stop="156339" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.741"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="489" r_length="462" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155388" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="597" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E710135" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156365" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATG</genome_strand>
        <mrna_strand>CCGCTTTATCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGCCGGAGAACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCCCGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTACAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGAGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACTAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708974" ref_strand="+" ref_description="SGN-E708974 [FA42BB11]">
      <seq>ccctttttaacggtccaaccagcttgatcagaacttcagggcatcctttttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccacaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcacaattaagcatgttaatagccaaaattttcccatccttacagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacaccgtcatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156670" stop="155090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156378" g_stop="156339" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.80"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="502" r_length="462" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155390" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="608" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708974" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156378" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGA</genome_strand>
        <mrna_strand>CCCTTTTTAACGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATCCTTTTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCACAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCACAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTACAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACACCGTCATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701707" ref_strand="+" ref_description="SGN-E701707 [FA16CH06]">
      <seq>agcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaggagatgcacaagtgcaggtagtagaccacaccgggcaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156913" stop="155094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156613" g_stop="156339" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="737" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155394" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="839" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156613" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAA</genome_strand>
        <mrna_strand>AGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709573" ref_strand="+" ref_description="SGN-E709573 [FA52BH06]">
      <seq>cgggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaaagaagagatgcacaagtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156924" stop="155118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156626" g_stop="156339" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="750" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155418" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="828" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E709573" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156626" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAG</genome_strand>
        <mrna_strand>CGGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAAGAGATGCACAAGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708148" ref_strand="+" ref_description="SGN-E708148 [FA34DH10]">
      <seq>ccaatattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattgctgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatctacgtgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156968" stop="155139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156669" g_stop="156339" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="793" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155439" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="850" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708148" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156669" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAA</genome_strand>
        <mrna_strand>CCAATATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGCTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705553" ref_strand="+" ref_description="SGN-E705553 [FA27BH08]">
      <seq>cttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156927" stop="155146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156627" g_stop="156339" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="751" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155446" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="801" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E705553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156627" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTA</genome_strand>
        <mrna_strand>CTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697733" ref_strand="+" ref_description="SGN-E697733 [FA03DH12]">
      <seq>gcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156928" stop="155148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156628" g_stop="156339" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="752" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155448" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="800" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E697733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156628" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATC</genome_strand>
        <mrna_strand>GCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553803" ref_strand="+" ref_description="SGN-E553803 [cTSC-2-E2]">
      <seq>atcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatggacacagcgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156917" stop="155150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156617" g_stop="156339" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="741" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155450" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="787" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156617" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGA</genome_strand>
        <mrna_strand>ATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704419" ref_strand="+" ref_description="SGN-E704419 [FA24BA03]">
      <seq>gttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtgaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156995" stop="155160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156695" g_stop="156339" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="819" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155460" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="855" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E704419" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156695" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGAATGGA</genome_strand>
        <mrna_strand>GTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699878" ref_strand="+" ref_description="SGN-E699878 [FA11BH04]">
      <seq>agaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatgagccctcactggtcagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156853" stop="155165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156553" g_stop="156339" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="677" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155465" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="708" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E699878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156553" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATGAGCCCTCACTGGTCAGTGA</genome_strand>
        <mrna_strand>AGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATGAGCCCTCACTGGTCAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554585" ref_strand="+" ref_description="SGN-E554585 [cTSC-4-M15]">
      <seq>tgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156985" stop="155296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156685" g_stop="156339" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="809" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155484" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="810" r_stop="821" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156685" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGATG</genome_strand>
        <mrna_strand>TGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701982" ref_strand="+" ref_description="SGN-E701982 [FA17BH10]">
      <seq>gccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttanagacatggacatgagtgcctctaaaagaaccctatatccgaacgcactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157074" stop="155296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156774" g_stop="156339" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="898" r_length="462" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155485" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="899" r_stop="909" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701982" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156774" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGAT</genome_strand>
        <mrna_strand>GCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTANAGACATGGACATGAGTGCCTCTAAAAGAACCCTATATCCG....................................................................................................AACGCACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554636" ref_strand="+" ref_description="SGN-E554636 [cTSC-4-O7]">
      <seq>gttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaatttaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156977" stop="155296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156677" g_stop="156339" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="802" r_length="463" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155485" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="813" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554636" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156677" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAA-TTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGAT</genome_strand>
        <mrna_strand>GTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703605" ref_strand="+" ref_description="SGN-E703605 [FA21DH04]">
      <seq>tgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctatatccgaacgcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157026" stop="155296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156726" g_stop="156339" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155596" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="850" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="155495" g_stop="155486" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="851" r_stop="860" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E703605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156726" e_stop="156339"/>
          <exon e_start="156057" e_stop="155596"/>
          <exon e_start="155495" e_stop="155486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCGGTAATTCAGTCAGTGTTATTTCTAAATTGATCAAAAATAAAAAAAAAATAATTCTTCTAGTACTATTGACTTGGAAATGATTAAAATTGGTGGATTGCAGAACGCACTGA</genome_strand>
        <mrna_strand>TGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG....................................................................................................AACGCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707706" ref_strand="+" ref_description="SGN-E707706 [FA33DA08]">
      <seq>cccattattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccctaaagacatggacatgagtgcctctaaaggaaccctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157061" stop="155300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156767" g_stop="156339" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155600" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="887" r_length="458" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E707706" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156767" e_stop="156339"/>
          <exon e_start="156057" e_stop="155600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATA</genome_strand>
        <mrna_strand>CCCATTATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCCTAAAGACATGGACATGAGTGCCTCTAAAGGAACCCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703737" ref_strand="+" ref_description="SGN-E703737 [FA22BC12]">
      <seq>gtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaatagccaaaattttcccatccttagagacatggacatgagtgcctctaaaggaaccctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157005" stop="155300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156705" g_stop="156339" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155600" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="825" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E703737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156705" e_stop="156339"/>
          <exon e_start="156057" e_stop="155600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATA</genome_strand>
        <mrna_strand>GTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554776" ref_strand="+" ref_description="SGN-E554776 [cTSC-5-G12]">
      <seq>gctggtgctgctcattggtgctacaacgacggacgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggtgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttgaaagaaaacatttgctcaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggctaaattaagcatgttaataagccaaaattttcccatccttagagacatggacatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156743" stop="155321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156443" g_stop="156339" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155621" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="544" r_length="438" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554776" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156443" e_stop="156339"/>
          <exon e_start="156057" e_stop="155621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGG-TGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAAT-AGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAG</genome_strand>
        <mrna_strand>GCTGGTGCTGCTCATTGGTGCTACAACGACGGACGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGTGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGAAAGAAAACATTTGCTCAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCTAAATTAAGCATGTTAATAAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701730" ref_strand="+" ref_description="SGN-E701730 [FA16DB06]">
      <seq>gcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaacatttgcacaatgaaaatccgcacccacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaagcatgttaataagccaaattttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157152" stop="155345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156852" g_stop="156339" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155645" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="926" r_length="412" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701730" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156852" e_stop="156339"/>
          <exon e_start="156057" e_stop="155645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCC</genome_strand>
        <mrna_strand>GCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAG-AAACATTTGCACAATGAAAATCCGCACCCACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAAGCCAAATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703664" ref_strand="+" ref_description="SGN-E703664 [FA22AE06]">
      <seq>gcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcacccacatggatactcaaagacgagctgatatctactcaaagcaagctggcaaaattaagcatgttaatagccaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157089" stop="155347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156789" g_stop="156339" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155647" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="862" r_length="411" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E703664" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156789" e_stop="156339"/>
          <exon e_start="156057" e_stop="155647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTT</genome_strand>
        <mrna_strand>GCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCCACATGGATACTCAAAGACGAGCTGATATCTACTCAAAGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698320" ref_strand="+" ref_description="SGN-E698320 [FA05DG08]">
      <seq>cgtgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagacaacatttgcacaatgaaaatccgcaccaacctggatactcaaagacgagctgatatctactcaaggcaagctggcaaaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156978" stop="155369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156680" g_stop="156339" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155669" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="731" r_length="389" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E698320" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156680" e_stop="156339"/>
          <exon e_start="156057" e_stop="155669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAA</genome_strand>
        <mrna_strand>CGTGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGACAACATTTGCACAATGAAAATCCGCACCAACCTGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703663" ref_strand="+" ref_description="SGN-E703663 [FA22AE05]">
      <seq>gcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatctactcaaggcaagctggcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157089" stop="155372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156789" g_stop="156339" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155672" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="837" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E703663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156789" e_stop="156339"/>
          <exon e_start="156057" e_stop="155672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAAT</genome_strand>
        <mrna_strand>GCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708610" ref_strand="+" ref_description="SGN-E708610 [FA36AH12]">
      <seq>cgcttacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatngaaatccgcacccacatggatactcaaagacgagctgatatctactcaaggcaagctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157107" stop="155377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156813" g_stop="156339" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155677" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="855" r_length="381" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708610" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156813" e_stop="156339"/>
          <exon e_start="156057" e_stop="155677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGC</genome_strand>
        <mrna_strand>CGCTTA-CAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATNGAAATCCGCACCCACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709722" ref_strand="+" ref_description="SGN-E709722 [FA52DG05]">
      <seq>gccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaatccgcaccaacatggatactcaaagacgaactgatatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157074" stop="155391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156774" g_stop="156339" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155691" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="802" r_length="366" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E709722" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156774" e_stop="156339"/>
          <exon e_start="156057" e_stop="155691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACT</genome_strand>
        <mrna_strand>GCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATG-AAATCCGCACCAACATGGATACTCAAAGACGAACTGATATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700749" ref_strand="+" ref_description="SGN-E700749 [FA14AC03]">
      <seq>cagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggaagaaaacatttgcacaatgaaaatccgcaccaacatggatactcaaagacgagctgatatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157151" stop="155393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156851" g_stop="156339" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155693" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="878" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E700749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156851" e_stop="156339"/>
          <exon e_start="156057" e_stop="155693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTA</genome_strand>
        <mrna_strand>CAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554013" ref_strand="+" ref_description="SGN-E554013 [cTSC-2-P10]">
      <seq>gcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttgaaagaaaacatttgcacaatgaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157143" stop="155431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156843" g_stop="156339" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155731" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="832" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554013" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156843" e_stop="156339"/>
          <exon e_start="156057" e_stop="155731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATC</genome_strand>
        <mrna_strand>GCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGAAAGAAAACATTTGCACAATGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705706" ref_strand="+" ref_description="SGN-E705706 [FA27DF09]">
      <seq>gtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgagcatgattagggctgatgaagaagaagaagaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggcttggagaaaacatttgcacaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157223" stop="155434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156923" g_stop="156339" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155734" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="908" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E705706" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156923" e_stop="156339"/>
          <exon e_start="156057" e_stop="155734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAA</genome_strand>
        <mrna_strand>GTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAAGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGG-AGAAAACATTTGCACAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555883" ref_strand="+" ref_description="SGN-E555883 [cTSD-1-L17]">
      <seq>acaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttncacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaatttcgagggcgatcacaacgaggacagcgatggtgggcagagtaactggaaatggcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157261" stop="155456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156961" g_stop="156339" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155756" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="924" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555883" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>925</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156961" e_stop="156339"/>
          <exon e_start="156057" e_stop="155756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGA</genome_strand>
        <mrna_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTNCACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTTCGAGGGCGATCACAACGAGGACAGCGATGGTGGGCAG-AGTAACTGGAAATGGCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367814" ref_strand="+" ref_description="SGN-E367814 [TUS-22-A11]">
      <seq>aaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattgttgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaatggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156967" stop="155459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156667" g_stop="156339" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155759" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="628" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E367814" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156667" e_stop="156339"/>
          <exon e_start="156057" e_stop="155759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTT</genome_strand>
        <mrna_strand>AAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGTTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554483" ref_strand="+" ref_description="SGN-E554483 [cTSC-4-H12]">
      <seq>cttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgatggtgggcagaagtaactggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157206" stop="155465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156906" g_stop="156339" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155765" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="861" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156906" e_stop="156339"/>
          <exon e_start="156057" e_stop="155765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAA</genome_strand>
        <mrna_strand>CTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555761" ref_strand="+" ref_description="SGN-E555761 [cTSD-1-F15]">
      <seq>acaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgatcacaacgaggacagcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157261" stop="155487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156961" g_stop="156339" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155787" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="894" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156961" e_stop="156339"/>
          <exon e_start="156057" e_stop="155787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGAT</genome_strand>
        <mrna_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703088" ref_strand="+" ref_description="SGN-E703088 [FA20CB03]">
      <seq>tatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttangaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgagcatgattanggctgatgaagaagaagaggaattcgaagggcgatcacaacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157282" stop="155496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156982" g_stop="156339" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155796" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="906" r_length="262" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E703088" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156982" e_stop="156339"/>
          <exon e_start="156057" e_stop="155796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAG</genome_strand>
        <mrna_strand>TATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTANGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAGCATGATTANGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708140" ref_strand="+" ref_description="SGN-E708140 [FA34DH01]">
      <seq>ctattaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaaaaagaggaattccaagggcgatcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157270" stop="155499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156971" g_stop="156339" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155799" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="892" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708140" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156971" e_stop="156339"/>
          <exon e_start="156057" e_stop="155799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAAC</genome_strand>
        <mrna_strand>CTATTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAAAAGAGGAATTCCAAGGGCGATCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555382" ref_strand="+" ref_description="SGN-E555382 [cTSC-2-I4]">
      <seq>ctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157193" stop="155505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156893" g_stop="156339" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155805" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="808" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156893" e_stop="156339"/>
          <exon e_start="156057" e_stop="155805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGAT</genome_strand>
        <mrna_strand>CTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698965" ref_strand="+" ref_description="SGN-E698965 [FA08AF04]">
      <seq>cgttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgtcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactacttgttaatgtcagggaaggaatgagcatgattagggctgatgaagaagaagaggaattcgaagggcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156995" stop="155505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156696" g_stop="156339" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155805" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="612" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E698965" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156696" e_stop="156339"/>
          <exon e_start="156057" e_stop="155805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCG-CTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGAT</genome_strand>
        <mrna_strand>CGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGTCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTACTTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702466" ref_strand="+" ref_description="SGN-E702466 [FA18DB11]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcaaaggccttcaacatccccgtagagattgttaggaggatgccagaagaacagaacgaacggggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156976" g_stop="156339" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155828" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="868" r_length="230" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E702466" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156976" e_stop="156339"/>
          <exon e_start="156057" e_stop="155828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGA</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAAAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCCAGAAGAACAGAACGAACGGGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553480" ref_strand="+" ref_description="SGN-E553480 [cTSC-1-E1]">
      <seq>ataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157279" stop="155530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156979" g_stop="156339" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155830" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="869" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156979" e_stop="156339"/>
          <exon e_start="156057" e_stop="155830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAA</genome_strand>
        <mrna_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707893" ref_strand="+" ref_description="SGN-E707893 [FA34BA11]">
      <seq>catttattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggaatgcagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156339" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155831" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="866" r_length="227" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E707893" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156339"/>
          <exon e_start="156057" e_stop="155831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</genome_strand>
        <mrna_strand>CATTTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGAATGCAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701815" ref_strand="+" ref_description="SGN-E701815 [FA17AB01]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttncacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156976" g_stop="156339" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155831" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="865" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701815" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156976" e_stop="156339"/>
          <exon e_start="156057" e_stop="155831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTNCACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709484" ref_strand="+" ref_description="SGN-E709484 [FA52AG04]">
      <seq>ggcggtctctactattgtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgaccatgattagggctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157239" stop="155531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156939" g_stop="156339" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155831" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="828" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E709484" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156939" e_stop="156339"/>
          <exon e_start="156057" e_stop="155831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</genome_strand>
        <mrna_strand>GGCGGTCTCTACTATTGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGACCATGATTAGGGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706323" ref_strand="+" ref_description="SGN-E706323 [FA29CF01]">
      <seq>gggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggagggaatgagcatgattagggctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157225" stop="155531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156925" g_stop="156339" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155831" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="814" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E706323" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156925" e_stop="156339"/>
          <exon e_start="156057" e_stop="155831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</genome_strand>
        <mrna_strand>GGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAGGGAATGAGCATGATTAGGGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552744" ref_strand="+" ref_description="SGN-E552744 [cTSB-4-O14]">
      <seq>ggcttgttagctttactcattctctgcttttctcttatctgctccacatgcatatacacaatgtccgtttctggacggtcagcgcggatcagagaagcattcctctgactcaagctcaactatgccgctgaccgaggcttactggaagccagacctctcaccgcattgagtcacagggcgggtaccctgaggtgtgggatgagaatgaagagcaattccagtgtgttggagttgctcctatgaagaatgttattcgtcaaaattctctctttttgcctgattttcatcccatgcctcggttggtttatatcaagcaggggatgggattgattagtgtgattaaccctggttgtgccgagactttccagatctctaccttccaaggtggccgaatggtccgtgaagagaggggtgaacgccgcgaatacgaccagcaccagaaggtccaccgcattcaccaaggccacgttgtggcaattccagcgggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagctgattagggctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157224" stop="155531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156923" g_stop="156339" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155831" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="813" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E552744" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156923" e_stop="156339"/>
          <exon e_start="156057" e_stop="155831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTGTTAGCTTTACTC-TTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGG-TCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAG-TCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGA</genome_strand>
        <mrna_strand>GGCTTGTTAGCTTTACTCATTCTCTGCTTTTCTCTTATCTGCTCCACATGCATATACACAATGTCCGTTTCTGGACGGTCAGCGCGGATCAGAGAAGCATTCCTCTGACTCAAGCTCAACTATGCCGCTGACCGAGGCTTACTGGAAGCCAGACCTCTCACCGCATTGAGTCACAGGGCGGGTACCCTGAGGTGTGGGATGAGAATGAAGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAAGAATGTTATTCGTCAAAATTCTCTCTTTTTGCCTGATTTTCATCCCATGCCTCGGTTGGTTTATATCAAGCAGGGGATGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGATCTC-TACCTTCCAAGGTGGCCGAATGGTCCGTGAAGAGAGGGGTGAACGCCGCGAATACGACCAGCACCAGAAGGTCCACCGCATTCACCAAGGCCACGTTGTGGCAATTCCAGCGGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGC-TGATTAGGGCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708163" ref_strand="+" ref_description="SGN-E708163 [FA35AB01]">
      <seq>tttttatattatatcatctattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttncacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157291" stop="155532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156991" g_stop="156339" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155832" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="879" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708163" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156991" e_stop="156339"/>
          <exon e_start="156057" e_stop="155832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATG</genome_strand>
        <mrna_strand>TTTTTATATTATATCATCTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTNCACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700322" ref_strand="+" ref_description="SGN-E700322 [FA12DB10]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcaggaaaggaatgagcatgattagggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156976" g_stop="156339" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155832" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="864" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E700322" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156976" e_stop="156339"/>
          <exon e_start="156057" e_stop="155832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATG</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGAAAGGAATGAGCATGATTAGGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709587" ref_strand="+" ref_description="SGN-E709587 [FA52CA08]">
      <seq>gtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcaggcaaggaatgaccatgattagggctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157268" stop="155532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156968" g_stop="156339" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155832" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="856" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E709587" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156968" e_stop="156339"/>
          <exon e_start="156057" e_stop="155832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATG</genome_strand>
        <mrna_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGCAAGGAATGACCATGATTAGGGCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702852" ref_strand="+" ref_description="SGN-E702852 [FA19DE05]">
      <seq>tttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaataagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157291" stop="155533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156991" g_stop="156339" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155833" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="878" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E702852" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156991" e_stop="156339"/>
          <exon e_start="156057" e_stop="155833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</genome_strand>
        <mrna_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAATAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708319" ref_strand="+" ref_description="SGN-E708319 [FA35BG07]">
      <seq>catctattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156339" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155833" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="864" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708319" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156339"/>
          <exon e_start="156057" e_stop="155833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</genome_strand>
        <mrna_strand>CATCTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700807" ref_strand="+" ref_description="SGN-E700807 [FA14AH07]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttangaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156976" g_stop="156339" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155833" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="863" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E700807" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156976" e_stop="156339"/>
          <exon e_start="156057" e_stop="155833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTANGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555695" ref_strand="+" ref_description="SGN-E555695 [cTSD-1-B8]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156976" g_stop="156339" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155833" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="863" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156976" e_stop="156339"/>
          <exon e_start="156057" e_stop="155833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553431" ref_strand="+" ref_description="SGN-E553431 [cTSC-1-B20]">
      <seq>ctccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcccatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagctttccacagactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtggcacgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcaggggaaggaatgagcatgattagggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157251" stop="155533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156951" g_stop="156339" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155833" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="839" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553431" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156951" e_stop="156339"/>
          <exon e_start="156057" e_stop="155833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCA-GGGAAGGAATGAGCATGATTAGGGCTGAT</genome_strand>
        <mrna_strand>CTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCCCATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCTTTCCACAGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGCACGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGGAAGGAATGAGCATGATTAGGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707793" ref_strand="+" ref_description="SGN-E707793 [FA34AA02]">
      <seq>cctttttgagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgagcatgattagggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157271" stop="155534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156339" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155834" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="863" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E707793" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156339"/>
          <exon e_start="156057" e_stop="155834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGA</genome_strand>
        <mrna_strand>CCTTTTTGAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAGCATGATTAGGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708229" ref_strand="+" ref_description="SGN-E708229 [FA35AG09]">
      <seq>tttttatattatatcatttattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157291" stop="155535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156991" g_stop="156339" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155835" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="876" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708229" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156991" e_stop="156339"/>
          <exon e_start="156057" e_stop="155835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</genome_strand>
        <mrna_strand>TTTTTATATTATATCATTTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704398" ref_strand="+" ref_description="SGN-E704398 [FA24AG03]">
      <seq>gtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggagggatgcagaagaacagaacgaacgtggactaatttgttatgtcagggaaggaatgagcatgattagggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157268" stop="155535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156968" g_stop="156339" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155835" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="853" r_length="223" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E704398" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156968" e_stop="156339"/>
          <exon e_start="156057" e_stop="155835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGA-GGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</genome_strand>
        <mrna_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGGATGC-AGAAGAACAGAACGAACGTGGACTAATTTGTTATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700640" ref_strand="+" ref_description="SGN-E700640 [FA13CH07]">
      <seq>gcccttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgattagggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157221" stop="155535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156924" g_stop="156339" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155835" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="810" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E700640" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156924" e_stop="156339"/>
          <exon e_start="156057" e_stop="155835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAG-AACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</genome_strand>
        <mrna_strand>GCCCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705984" ref_strand="+" ref_description="SGN-E705984 [FA28CG03]">
      <seq>tttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157291" stop="155541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156991" g_stop="156339" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155841" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="870" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E705984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156991" e_stop="156339"/>
          <exon e_start="156057" e_stop="155841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</genome_strand>
        <mrna_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705307" ref_strand="+" ref_description="SGN-E705307 [FA26DA07]">
      <seq>ataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157279" stop="155541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156979" g_stop="156339" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155841" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="858" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E705307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156979" e_stop="156339"/>
          <exon e_start="156057" e_stop="155841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</genome_strand>
        <mrna_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703107" ref_strand="+" ref_description="SGN-E703107 [FA20CC11]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156976" g_stop="156339" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155841" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="855" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E703107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156976" e_stop="156339"/>
          <exon e_start="156057" e_stop="155841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701186" ref_strand="+" ref_description="SGN-E701186 [FA15BA11]">
      <seq>aattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgagcatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157273" stop="155541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156973" g_stop="156339" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155841" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="852" r_length="217" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701186" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156973" e_stop="156339"/>
          <exon e_start="156057" e_stop="155841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTA</genome_strand>
        <mrna_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAGCATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553534" ref_strand="+" ref_description="SGN-E553534 [cTSC-1-G24]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaatttgttaatgtcagggaaggaatgagcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="155543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156339" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155843" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="855" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553534" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156339"/>
          <exon e_start="156057" e_stop="155843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAA-TTGTTAATGTCAGGGAAGGAATGAGCATGAT</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTTGTTAATGTCAGGGAAGGAATGAGCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708113" ref_strand="+" ref_description="SGN-E708113 [FA34DE10]">
      <seq>ccgatgagagagagagagaatcaattagtaataaacaataaaaactccatagccatggaggtctctactaaggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaagaatgaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157281" stop="155544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156409" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="587" r_length="569" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156408" i_stop="156040" i_length="369">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156039" g_stop="155844" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="783" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708113" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156409"/>
          <exon e_start="156039" e_stop="155844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGA</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCATAGCCATGGAGGTCTCTACTAAGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGA.................................................................................................................................................................................................................................................................................................................................................................................GGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAAGAATGAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709566" ref_strand="+" ref_description="SGN-E709566 [FA52BG10]">
      <seq>caattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaatgagcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157274" stop="155544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156974" g_stop="156339" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155844" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="850" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E709566" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156974" e_stop="156339"/>
          <exon e_start="156057" e_stop="155844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGA</genome_strand>
        <mrna_strand>CAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703321" ref_strand="+" ref_description="SGN-E703321 [FA21AG03]">
      <seq>aattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaaactgatggcagaggccttcaacatccccgtagagatttgttagaggatgcaagaagaacagaacgaacgtgggactaattgttaatgtcagggaaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157273" stop="155551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156973" g_stop="156339" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155851" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="844" r_length="209" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E703321" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156973" e_stop="156339"/>
          <exon e_start="156057" e_stop="155851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAG-AACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGT-GGACTAATTGTTAATGTCAGGGAAGGAATG</genome_strand>
        <mrna_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTTGTTAGAGGATGCAAGAAGAACAGAACGAACGTGGGACTAATTGTTAATGTCAGGGAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707812" ref_strand="+" ref_description="SGN-E707812 [FA34AB10]">
      <seq>ctctattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157275" stop="155552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156976" g_stop="156339" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155852" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="844" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E707812" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156976" e_stop="156339"/>
          <exon e_start="156057" e_stop="155852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAAT</genome_strand>
        <mrna_strand>CTCTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709659" ref_strand="+" ref_description="SGN-E709659 [FA52CH06]">
      <seq>ataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcaccagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgccagaagaacagaacgaacgtggactaattgttaatgtcagggaaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157258" stop="155552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156958" g_stop="156339" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155852" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="826" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E709659" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156958" e_stop="156339"/>
          <exon e_start="156057" e_stop="155852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAAT</genome_strand>
        <mrna_strand>ATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCACCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCCAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554512" ref_strand="+" ref_description="SGN-E554512 [cTSC-4-I22]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacatttttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaaaaagaacagaacgaacgtggactaattgttaatgtcagggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="155557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156339" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155857" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="841" r_length="202" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554512" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156339"/>
          <exon e_start="156057" e_stop="155857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACA-TTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAA</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAAAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707580" ref_strand="+" ref_description="SGN-E707580 [FA33BF07]">
      <seq>catttattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156339" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155862" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="835" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E707580" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156339"/>
          <exon e_start="156057" e_stop="155862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCA</genome_strand>
        <mrna_strand>CATTTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721987" ref_strand="+" ref_description="SGN-E721987 [FC15DE07]">
      <seq>gatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157306" stop="155564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157007" g_stop="156339" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155864" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="863" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E721987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157007" e_stop="156339"/>
          <exon e_start="156057" e_stop="155864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGT</genome_strand>
        <mrna_strand>GATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554263" ref_strand="+" ref_description="SGN-E554263 [cTSC-3-L5]">
      <seq>ataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagatttgttaggaggatgcaagaagaacagaacgaacgtggactaattgttaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157258" stop="155564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156958" g_stop="156339" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155864" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="815" r_length="195" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554263" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156958" e_stop="156339"/>
          <exon e_start="156057" e_stop="155864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGA-TTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGT</genome_strand>
        <mrna_strand>ATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701433" ref_strand="+" ref_description="SGN-E701433 [FA15DH03]">
      <seq>ggacgaggatcacttagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcnagaagaacagaacgaacgtggactaattgttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156984" g_stop="156339" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155866" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="838" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701433" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156984" e_stop="156339"/>
          <exon e_start="156057" e_stop="155866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAAT</genome_strand>
        <mrna_strand>GGACGAGGATCACTTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCNAGAAGAACAGAACGAACGTGGACTAATTGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701081" ref_strand="+" ref_description="SGN-E701081 [FA14DH09]">
      <seq>ataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggggtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaatttgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157279" stop="155568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156979" g_stop="156339" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155866" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="833" r_length="192" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701081" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156979" e_stop="156339"/>
          <exon e_start="156057" e_stop="155866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAAT</genome_strand>
        <mrna_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGGGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705932" ref_strand="+" ref_description="SGN-E705932 [FA28CB10]">
      <seq>cgaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatcccccgtagagattgttaggaggatgccagaagaccagaacgaccgtggactaattgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157259" stop="155568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156961" g_stop="156339" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155868" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="814" r_length="191" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E705932" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156961" e_stop="156339"/>
          <exon e_start="156057" e_stop="155868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACAT-CCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTA</genome_strand>
        <mrna_strand>CGAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCCGTAGAGATTGTTAGGAGGATGCCAGAAGACCAGAACGACCGTGGACTAATTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708482" ref_strand="+" ref_description="SGN-E708482 [FA35DE10]">
      <seq>cttttattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaagaggatgcaagaagaacagaacgaacgtggactaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157289" stop="155571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156989" g_stop="156339" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155871" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="838" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708482" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156989" e_stop="156339"/>
          <exon e_start="156057" e_stop="155871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</genome_strand>
        <mrna_strand>CTTTTATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAAGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706467" ref_strand="+" ref_description="SGN-E706467 [FA30AB08]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156976" g_stop="156339" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155871" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="825" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E706467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156976" e_stop="156339"/>
          <exon e_start="156057" e_stop="155871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704322" ref_strand="+" ref_description="SGN-E704322 [FA23DH06]">
      <seq>gtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtggggtgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaacgtggactaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157268" stop="155571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156968" g_stop="156339" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155871" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="817" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E704322" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156968" e_stop="156339"/>
          <exon e_start="156057" e_stop="155871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</genome_strand>
        <mrna_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGGTGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554655" ref_strand="+" ref_description="SGN-E554655 [cTSC-4-P8]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaatttggtgtaggaaaagcaaagcacacagaaattccagaacattttccgtgctttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggagggatgcaagaaagaacagaacgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="155582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156339" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155882" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="820" r_length="181" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554655" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156339"/>
          <exon e_start="156057" e_stop="155882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAA-TTGGTGTAGG-AAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTT-AACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGA-GGATGCAAG-AAGAACAGAACGAACG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTTGGTGTAGGAAAAGCAAAGCACACAGAAATTCCAGAACATTTTCCGTGCTTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGGATGCAAGAAAGAACAGAACGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704634" ref_strand="+" ref_description="SGN-E704634 [FA24DD01]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtangaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaacagaacgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156976" g_stop="156339" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155883" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="813" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E704634" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156976" e_stop="156339"/>
          <exon e_start="156057" e_stop="155883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAAC</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTANGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699623" ref_strand="+" ref_description="SGN-E699623 [FA10CH08]">
      <seq>cctttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgaaagaagaacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157291" stop="155588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156993" g_stop="156339" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155888" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="825" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E699623" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156993" e_stop="156339"/>
          <exon e_start="156057" e_stop="155888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAA</genome_strand>
        <mrna_strand>CCTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGAAAGAAGAACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706480" ref_strand="+" ref_description="SGN-E706480 [FA30AD01]">
      <seq>gtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtaaagattgttaggaggatgcaagaagaacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157268" stop="155588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156968" g_stop="156339" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155888" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="800" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E706480" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156968" e_stop="156339"/>
          <exon e_start="156057" e_stop="155888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAA</genome_strand>
        <mrna_strand>GTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAAAGATTGTTAGGAGGATGCAAGAAGAACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553864" ref_strand="+" ref_description="SGN-E553864 [cTSC-2-H21]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaagaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="155592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156339" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155892" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="805" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E553864" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156339"/>
          <exon e_start="156057" e_stop="155892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAAC</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554114" ref_strand="+" ref_description="SGN-E554114 [cTSC-3-E18]">
      <seq>atcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaaattccagaacattttccgtgctttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156976" g_stop="156339" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155897" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="800" r_length="162" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554114" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156976" e_stop="156339"/>
          <exon e_start="156057" e_stop="155897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGC-TTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGA</genome_strand>
        <mrna_strand>ATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAATTCCAGAACATTTTCCGTGCTTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721882" ref_strand="+" ref_description="SGN-E721882 [FC15CC12]">
      <seq>tgggcgattggcggccaatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggcctttcacatccccgtagagattgttaggaggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157315" stop="155600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157006" g_stop="156339" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="698" r_length="668" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155900" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="856" r_length="158" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E721882" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157006" e_stop="156339"/>
          <exon e_start="156057" e_stop="155900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCA</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTTCACATCCCCGTAGAGATTGTTAGGAGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554734" ref_strand="+" ref_description="SGN-E554734 [cTSC-5-E10]">
      <seq>caattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccatcaccagaaggtccaccgcattcgccaaggcgacgttgtggcataaccaactggtactgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctctaccatcggtccaaccagcttgatcagaacttcatggcattctacttggccggtggagtacaataaactagtggaaggcaaattggcgtaggaaagctaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccctgtagagattgttacgaggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157013" stop="155600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156713" g_stop="156339" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155900" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="533" r_length="158" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554734" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156713" e_stop="156339"/>
          <exon e_start="156057" e_stop="155900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCA</genome_strand>
        <mrna_strand>CAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCATCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCATAACCAACTGGTACTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCTACCATCGGTCCAACCAGCTTGATCAGAACTTCATG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAATAAACTAGTGGAAGGCAAATTGGCGTAGGAAAGCTAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCTGTAGAGATTGTTACGAGGATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720103" ref_strand="+" ref_description="SGN-E720103 [FC09DC11]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157308" stop="155601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157006" g_stop="156339" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="713" r_length="668" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155901" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="870" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E720103" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157006" e_stop="156339"/>
          <exon e_start="156057" e_stop="155901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGC</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722774" ref_strand="+" ref_description="SGN-E722774 [FC18BB09]">
      <seq>gatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgtagagattgttaggaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157306" stop="155602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157007" g_stop="156339" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155902" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="825" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E722774" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157007" e_stop="156339"/>
          <exon e_start="156057" e_stop="155902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATG</genome_strand>
        <mrna_strand>GATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698090" ref_strand="+" ref_description="SGN-E698090 [FA05AH08]">
      <seq>catcttttagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156339" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155921" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="776" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E698090" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156339"/>
          <exon e_start="156057" e_stop="155921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGT</genome_strand>
        <mrna_strand>CATCTTTTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556789" ref_strand="+" ref_description="SGN-E556789 [cTSD-4-J23]">
      <seq>acaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacatccccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157261" stop="155621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156961" g_stop="156339" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155921" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="760" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E556789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156961" e_stop="156339"/>
          <exon e_start="156057" e_stop="155921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGT</genome_strand>
        <mrna_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708675" ref_strand="+" ref_description="SGN-E708675 [FA36BH06]">
      <seq>catctattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcaaaggccttcaacatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157276" stop="155623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156339" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155923" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="774" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E708675" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156339"/>
          <exon e_start="156057" e_stop="155923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCC</genome_strand>
        <mrna_strand>CATCTATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAAAGGCCTTCAACATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710057" ref_strand="+" ref_description="SGN-E710057 [FA54AC12]">
      <seq>attttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcaaggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaagaaagccaagcacacagaagttccagaacattttccgtgctttttacacagaactgatggcagaggccttcaacatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157293" stop="155624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156993" g_stop="156339" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155924" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="789" r_length="134" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E710057" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156993" e_stop="156339"/>
          <exon e_start="156057" e_stop="155924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCC</genome_strand>
        <mrna_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAAG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAAGAAAGCCAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTTACACAGAACTGATGGCAGAGGCCTTCAACATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719071" ref_strand="+" ref_description="SGN-E719071 [FC06CF10]">
      <seq>aatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggccttcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157315" stop="155627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157020" g_stop="156339" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155927" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="813" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E719071" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157020" e_stop="156339"/>
          <exon e_start="156057" e_stop="155927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCAAATCTCATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACAT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238296" ref_strand="+" ref_description="SGN-E238296 [cLED-17-A13]">
      <seq>tggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgctttaacacagaactgatggcagaggacttcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156840" stop="155627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156540" g_stop="156339" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155927" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="332" r_length="130" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E238296" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156540" e_stop="156339"/>
          <exon e_start="156057" e_stop="155927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACAT</genome_strand>
        <mrna_strand>TGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGC-TTTAACACAGAACTGATGGCAGAGGACTTCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701661" ref_strand="+" ref_description="SGN-E701661 [FA16CD07]">
      <seq>attttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157293" stop="155635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156993" g_stop="156339" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155935" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="778" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E701661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156993" e_stop="156339"/>
          <exon e_start="156057" e_stop="155935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCC</genome_strand>
        <mrna_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706921" ref_strand="+" ref_description="SGN-E706921 [FA31CC04]">
      <seq>acaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggcagaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157261" stop="155635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156961" g_stop="156339" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155935" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="746" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E706921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156961" e_stop="156339"/>
          <exon e_start="156057" e_stop="155935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCC</genome_strand>
        <mrna_strand>ACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720546" ref_strand="+" ref_description="SGN-E720546 [FC11AE08]">
      <seq>aatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcaaaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157315" stop="155642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157020" g_stop="156339" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155942" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="798" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E720546" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157020" e_stop="156339"/>
          <exon e_start="156057" e_stop="155942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCAAATCTCATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAAACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719740" ref_strand="+" ref_description="SGN-E719740 [FC08DA06]">
      <seq>gggcgattggcggccaatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157315" stop="155642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157006" g_stop="156339" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="697" r_length="668" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155942" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="813" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E719740" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157006" e_stop="156339"/>
          <exon e_start="156057" e_stop="155942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722546" ref_strand="+" ref_description="SGN-E722546 [FC17CD04]">
      <seq>gggcgattggcggccaatcggccgaattgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttttaacacagaactgatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157315" stop="155642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157006" g_stop="156339" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="697" r_length="668" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155942" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="813" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E722546" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157006" e_stop="156339"/>
          <exon e_start="156057" e_stop="155942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705107" ref_strand="+" ref_description="SGN-E705107 [FA26AG05]">
      <seq>attttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaagcaaattggtgtaggaaagcaaagcacagaagttccagaacattttccgtgcttttaacacagaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157293" stop="155645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156993" g_stop="156339" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155945" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="766" r_length="111" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E705107" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156993" e_stop="156339"/>
          <exon e_start="156057" e_stop="155945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGAT</genome_strand>
        <mrna_strand>ATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAAGCAAATTGGTGTAGGAAAGCAAAG--CACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699663" ref_strand="+" ref_description="SGN-E699663 [FA10DD08]">
      <seq>cgcttagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattgctgtacgaaagcaaagcacacagaagttccagaacattttccgtgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157271" stop="155658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156974" g_stop="156339" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155958" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="736" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E699663" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156974" e_stop="156339"/>
          <exon e_start="156057" e_stop="155958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTA</genome_strand>
        <mrna_strand>CGCTTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGCTGTACGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704767" ref_strand="+" ref_description="SGN-E704767 [FA25AH02]">
      <seq>tttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtaccaaaaactagtggaaggcaaattggtgtacgaaagcaaagcacccagaagttccacaacattttccgtgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157291" stop="155659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156991" g_stop="156339" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155959" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="752" r_length="99" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E704767" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156991" e_stop="156339"/>
          <exon e_start="156057" e_stop="155959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTT</genome_strand>
        <mrna_strand>TTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACCAAAAACTAGTGGAAGGCAAATTGGTGTACGAAAGCAAAGCACCCAGAAGTTCCACAACATTTTCCGTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699917" ref_strand="+" ref_description="SGN-E699917 [FA11CD03]">
      <seq>cggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctggttggccggtggagtacaaaaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157237" stop="155659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156937" g_stop="156339" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155959" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="698" r_length="99" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E699917" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156937" e_stop="156339"/>
          <exon e_start="156057" e_stop="155959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTT</genome_strand>
        <mrna_strand>CGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTGGTTGGCCGGTGGAGTACAAAAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699592" ref_strand="+" ref_description="SGN-E699592 [FA10CE03]">
      <seq>ccaatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacagaagttccagaacattttccgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="155660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156979" g_stop="156339" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155960" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="739" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E699592" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156979" e_stop="156339"/>
          <exon e_start="156057" e_stop="155960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTT</genome_strand>
        <mrna_strand>CCAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722395" ref_strand="+" ref_description="SGN-E722395 [FC17AF02]">
      <seq>aatcggccgaattgatctcatctttgtattctttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtgaaaggcaaattggtgtaggaaaagcaaagcacacagaagttccagaacattttccgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157315" stop="155663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157020" g_stop="156339" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155963" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="778" r_length="96" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E722395" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157020" e_stop="156339"/>
          <exon e_start="156057" e_stop="155963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCAAATCTCATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGG-AAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGC</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATCTCATCTTTGTATTCTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGAAAGGCAAATTGGTGTAGGAAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368063" ref_strand="+" ref_description="SGN-E368063 [TUS-22-A18]">
      <seq>tggccgaatggcaggtgaagagaggggtgaacgtccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacatcgactgtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtgtaaggcaaattggtgtaggaaagcaaatcacacagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="156840" stop="155681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156540" g_stop="156339" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155980" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="281" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E368063" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156540" e_stop="156339"/>
          <exon e_start="156057" e_stop="155980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCGAATGGCAGGTGAAGAGAGGGGTGAACG-CCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTC</genome_strand>
        <mrna_strand>TGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGTCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACATCGACTGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGTAAGGCAAATTGGTGTAGGAAAGCAAATCACACAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724241" ref_strand="+" ref_description="SGN-E724241 [FC23CA08]">
      <seq>ggggatccgatgatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcacacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157308" stop="155685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157006" g_stop="156339" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="680" r_length="668" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155985" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="753" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E724241" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157006" e_stop="156339"/>
          <exon e_start="156057" e_stop="155985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGA</genome_strand>
        <mrna_strand>ATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723066" ref_strand="+" ref_description="SGN-E723066 [FC19BA10]">
      <seq>gatctcatctttgtattttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagcaaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157306" stop="155690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157007" g_stop="156339" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155990" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="737" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E723066" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157007" e_stop="156339"/>
          <exon e_start="156057" e_stop="155990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCAC</genome_strand>
        <mrna_strand>GATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725049" ref_strand="+" ref_description="SGN-E725049 [FC25DF11]">
      <seq>aatcggccgaattaatctcatctttgctcttttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcaaaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcaaaacttcagggcattctacttggccggtggagtacaagaaactagtggaaggcaaattggtgtaggaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157315" stop="155696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157020" g_stop="156339" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="155996" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="745" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E725049" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157020" e_stop="156339"/>
          <exon e_start="156057" e_stop="155996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCAAATCTCATCTCATCTTTG-TATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCA</genome_strand>
        <mrna_strand>AATCGGCCGAATTAATCTCATCTTTGCTCTTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAAACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAAAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710310" ref_strand="+" ref_description="SGN-E710310 [FA55AB07]">
      <seq>ctttataaggatcaattagtaataaacaataaaaactccttccccttggaggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtacccgtctccattaacgatctcaaccatcggtccaacccccttgatcagaactttagggcattctacttggccggtggagtacaagaaactaaaggaaggcaaattggtgtacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157283" stop="155700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156988" g_stop="156339" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="156000" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="706" r_length="58" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E710310" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156988" e_stop="156339"/>
          <exon e_start="156057" e_stop="156000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAA</genome_strand>
        <mrna_strand>CTTTAT-A-AGGATCAATTAGTAATAAACAATAAAAACTCCTTCCCCTTGGAGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTACCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCCCCTTGATCAGAACTTTAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAAAGGAAGGCAAATTGGTGTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706895" ref_strand="+" ref_description="SGN-E706895 [FA31AH12]">
      <seq>cgccttggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagagggttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctccacaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtcctccattaacgatctccaccatcggcccaacccagcttgatcagaaattcagggcattctacttggccggtggactacaacaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157244" stop="155725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156945" g_stop="156339" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="156025" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="643" r_length="33" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E706895" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156945" e_stop="156339"/>
          <exon e_start="156057" e_stop="156025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCT-CAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGT-CTCCATTAACGATCTCAACCATCGGTCCAA-CCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAACT</genome_strand>
        <mrna_strand>CGCCTTGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGGTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCCACACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCCTCCATTAACGATCTCCACCATCGGCCCAACCCAGCTTGATCAGAAATTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGACTACAACAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719688" ref_strand="+" ref_description="SGN-E719688 [FC08CD04]">
      <seq>taaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggagtacaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157264" stop="155727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156964" g_stop="156339" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="156027" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="657" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E719688" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156964" e_stop="156339"/>
          <exon e_start="156057" e_stop="156027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAGTACAAGAAA</genome_strand>
        <mrna_strand>TAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAGTACAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697611" ref_strand="+" ref_description="SGN-E697611 [FA03CC12]">
      <seq>cgaaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcagaacttcagggcattctacttggccggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157256" stop="155736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156958" g_stop="156339" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="156036" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="642" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E697611" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156958" e_stop="156339"/>
          <exon e_start="156057" e_stop="156036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAG</genome_strand>
        <mrna_strand>CGAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704728" ref_strand="+" ref_description="SGN-E704728 [FA25AD06]">
      <seq>agctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccacccagcttgatcagaacttcagggcattctacttggccggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157215" stop="155736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156915" g_stop="156339" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="156036" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="599" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E704728" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156915" e_stop="156339"/>
          <exon e_start="156057" e_stop="156036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGCCGGTGGAG</genome_strand>
        <mrna_strand>AGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCACCCAGCTTGATCAGAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGCCGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698708" ref_strand="+" ref_description="SGN-E698708 [FA07BD09]">
      <seq>ccgtttttatattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggctgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgaccgtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaaccagcttgatcacaacttcagggcattctacttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157291" stop="156036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156994" g_stop="156339" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="156057" g_stop="156044" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="670" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E698708" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156994" e_stop="156339"/>
          <exon e_start="156057" e_stop="156044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGGGTAAATTCTATTCCTATTAAAGATATATAGAATGTATACCAAATCCTACTTGATCTTTAAATACGTCAGATGAAAAAGTTAAATTACCACTTCTTTTGGTAATCTGATGAAATTTTTATGCATGCAATTTCATAACGATTATACTTAAAAAGAAATTACAGGCAATTGGTAACTAGATCTTGCTAGTTAACCTACACAAATCAATGTACTCATGTTAACTTCGTATTCTTTCATAACTCGATGTACTTATTGGTCGACTGTACTATTTGTGTGGATTTTAGGCATTCTACTTGGC</genome_strand>
        <mrna_strand>CCGTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGCTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACCGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCACAACTTCAGG.........................................................................................................................................................................................................................................................................................GCATTCTACTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721516" ref_strand="+" ref_description="SGN-E721516 [FC14AF08]">
      <seq>ctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcaaaccttccaggctggccgaatggcaggtgaaaagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaagccgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaaaagctagtacccgtctccattaacgatctcaaccatcggtccaaccagcttgatcaaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157231" stop="156043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156931" g_stop="156343" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E721516" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156931" e_stop="156343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTT</genome_strand>
        <mrna_strand>CTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAAACCTTCCAGGCTGGCCGAATGGCAGGTGAAAAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGCCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAAAGCTAGTACCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723199" ref_strand="+" ref_description="SGN-E723199 [FC19CH11]">
      <seq>aattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgaggaagagctagtagccgtctccattaacgatctcaaccatcggtccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157273" stop="156061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156973" g_stop="156361" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E723199" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156973" e_stop="156361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAA</genome_strand>
        <mrna_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709599" ref_strand="+" ref_description="SGN-E709599 [FA52CB08]">
      <seq>caattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgacccagcaccagaaggtccaccgcattcgccaaggcgacgccgtggcaattccagctggtgctgctcattggtgctacaccgacggtgaggaagagctagtacccgtctccattaacgatctcaacccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157274" stop="156069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156974" g_stop="156373" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E709599" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156974" e_stop="156373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGA-CCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAA</genome_strand>
        <mrna_strand>CAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGCCGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACACCGACGGTGAGGAAGAGCTAGTACCCGTCTCCATTAACGATCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724854" ref_strand="+" ref_description="SGN-E724854 [FC25BD08]">
      <seq>ctcatctttgtattttttatattatataatcaatcattaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcaaaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacgacggtgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157304" stop="156106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="157004" g_stop="156406" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E724854" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="157004" e_stop="156406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGA</genome_strand>
        <mrna_strand>CTCATCTTTGTATTTTTTATATTATATAATCAATCATTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAAACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271097" ref_strand="+" ref_description="SGN-E271097 [cLEM-22-M13]">
      <seq>tattatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgctgctcattggtgctacaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157285" stop="156116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156985" g_stop="156416" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E271097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156985" e_stop="156416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACG</genome_strand>
        <mrna_strand>TATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710971" ref_strand="+" ref_description="SGN-E710971 [FA57CC03]">
      <seq>taatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggcgctgctcattggtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157278" stop="156121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156978" g_stop="156421" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E710971" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156978" e_stop="156421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTA</genome_strand>
        <mrna_strand>TAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGCGCTGCTCATTGGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556030" ref_strand="+" ref_description="SGN-E556030 [cTSD-2-D10]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcgagttctactaagggcttgttagctttactcttcgctgcttttctcttaactgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156437" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E556030" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGAGTTCTACTAAGGGCTTGTTAGCTTTACTCTTCGCTGCTTTTCTCTTAACTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554767" ref_strand="+" ref_description="SGN-E554767 [cTSC-5-F24]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcataccttccaggctggccgaatggcatgtgaagagaggggtgaacaccgcggatacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtgacaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156437" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554767" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCATACCTTCCAGGCTGGCCGAATGGCATGTGAAGAGAGGGGTGAACACCGCGGATACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGACAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554911" ref_strand="+" ref_description="SGN-E554911 [cTSC-5-M7]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcacctgaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156437" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554911" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCTGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555827" ref_strand="+" ref_description="SGN-E555827 [cTSD-1-I21]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156437" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555863" ref_strand="+" ref_description="SGN-E555863 [cTSD-1-K17]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156437" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555968" ref_strand="+" ref_description="SGN-E555968 [cTSD-1-P3]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156437" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E555968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556713" ref_strand="+" ref_description="SGN-E556713 [cTSD-4-F6]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156437" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E556713" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556749" ref_strand="+" ref_description="SGN-E556749 [cTSD-4-H23]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156437" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E556749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556882" ref_strand="+" ref_description="SGN-E556882 [cTSD-4-O16]">
      <seq>aatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157277" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156977" g_stop="156437" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E556882" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156977" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>AATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554844" ref_strand="+" ref_description="SGN-E554844 [cTSC-5-J21]">
      <seq>ccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157249" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156949" g_stop="156437" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E554844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156949" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>CCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556236" ref_strand="+" ref_description="SGN-E556236 [cTSD-2-N17]">
      <seq>agtcttatccaaatttttctggagttagtcgctacccatgatgggtctctactaaggatcttgttaactttactctatctctgcttttctcttatctgcagcaaatgcatatagacaatatccggtgggcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157241" stop="156137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156943" g_stop="156437" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="547" r_length="512" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E556236" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156943" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATG-GCGGTCTCTACT-AGGGTCTTGTTAGCTTTACTCT-TCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCC-GT-TTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>CCATGATGGGTCTCTACTAAGGATCTTGTTAACTTTACTCTATCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGGTGGGCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723796" ref_strand="+" ref_description="SGN-E723796 [FC21DH06]">
      <seq>gcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgccgcggaaacgaccagcaccagaaggtccaccgcattcgccaaggcgacgttgtggcaattccagctggtgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157199" stop="156134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156899" g_stop="156437" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E723796" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156899" e_stop="156437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</genome_strand>
        <mrna_strand>GCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698378" ref_strand="+" ref_description="SGN-E698378 [FA06AE05]">
      <seq>aaactccttagccatggcggtctctactatggtcttgttagctttactcttctctgcttttctcttatctgcagcacatgcatatagacaatatccgtttccgcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacacaggcttactggaagccagccctctcaccgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagcgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatccagcacggcaggggattgattaatgtgattaaccctggctgtgccgagactttccagtctcagaccttccaggatggccgaatggcacgtgaatagaggggtgaacgccgcggaaacgaccagcaccagatggtccaccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157254" stop="156174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156954" g_stop="156474" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E698378" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156954" e_stop="156474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGC</genome_strand>
        <mrna_strand>AAACTCCTTAGCCATGGCGGTCTCTACTATGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCACATGCATATAGACAATATCCGTTTCCGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACACAGGCTTACTGGAAGCCAGCCCTCTCACCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGCGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCCAGCACGGCAGGGGATTGATTAATGTGATTAACCCTGGCTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGATGGCCGAATGGCACGTGAATAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGATGGTCCACCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706839" ref_strand="+" ref_description="SGN-E706839 [FA31AC12]">
      <seq>atattatataatcaattactaataaacaataaaaactccttagccatggcggtctctactagggccttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggccagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcacagggcgggtaccactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgacgaatgttattcgtcaaaattctctcctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcacgggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccacgctggccgaatggcaggtgaaaacaggggtgaacgccgcgcaaaccaccaccaccagaaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157286" stop="156180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156986" g_stop="156480" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E706839" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156986" e_stop="156480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTA-CACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCT-CTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTC</genome_strand>
        <mrna_strand>ATATTATATAATCAATTACTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGCCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGCCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCACAGGGCGGGTACCACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGACGAATGTTATTCGTCAAAATTCTCTCCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCACGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCACGCTGGCCGAATGGCAGGTGAAAACAGGGGTGAACGCCGCGCAAACCACCACCACCAGAAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699191" ref_strand="+" ref_description="SGN-E699191 [FA09AA10]">
      <seq>caccctttattagtaataaactataaaaactccttagccatggcggcctctactagggtcttgttaactttactcttctctgcttttctcttatcagcagcaaatgcatatagacaatatccgtttcatcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagacagagggcggttacactgaggtgtgggatgagaatgaggagcaattccagtgtgttgcagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagctaggcaggagattgattaatgtgattaaccctggttgcgcagagactttccagtctcataccttcccggctggtcgaatggcatgtgaagagaggggtgaacgccgcggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157272" stop="156200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156980" g_stop="156500" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E699191" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156980" e_stop="156500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAA</genome_strand>
        <mrna_strand>CACCCTTTATTAGTAATAAACTATAAAAACTCCTTAGCCATGGCGGCCTCTACTAGGGTCTTGTTAACTTTACTCTTCTCTGCTTTTCTCTTATCAGCAGCAAATGCATATAGACAATATCCGTTTCATCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGACAGAGGGCGGTTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGCAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCTAGGCAGGAGATTGATTAATGTGATTAACCCTGGTTGCGCAGAGACTTTCCAGTCTCATACCTTCCCGGCTGGTCGAATGGCATGTGAAGAGAGGGGTGAACGCCGCGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699669" ref_strand="+" ref_description="SGN-E699669 [FA10DE03]">
      <seq>ccttattaataaacaataaaaactccttagccatggcggtctctactaaggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctccacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggaccaattccagtgtgttggagttgctcctatgacgaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattactgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatggcaggtgaagagaggggtgaacgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157271" stop="156206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156973" g_stop="156506" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E699669" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156973" e_stop="156506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCC</genome_strand>
        <mrna_strand>CCTTATTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAAGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCCACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGACCAATTCCAGTGTGTTGGAGTTGCTCCTATGACGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTACTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724093" ref_strand="+" ref_description="SGN-E724093 [FC23AB06]">
      <seq>ataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgagtggtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgataaaccctggttgtgccgagactttccagtctcaaaccttccaggctggccaaatggcaggtgaaaagaggggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157265" stop="156210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156965" g_stop="156510" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E724093" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156965" e_stop="156510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAA</genome_strand>
        <mrna_strand>ATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGTGGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATAAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAAACCTTCCAGGCTGGCCAAATGGCAGGTGAAAAGAGGGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699312" ref_strand="+" ref_description="SGN-E699312 [FA09CC04]">
      <seq>ctttactcttctcctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgacaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcctcaaaattctctctctttgcctaattttcatcccatgcctcgcttgcgtttatatcgagcaaggcaggggatcgattagtgtgattaacccctggctgtgccgagactttccagtctcagaccttccacgttggccgaatggcaggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157213" stop="156223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156913" g_stop="156523" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E699312" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156913" e_stop="156523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACTCTTCT-CTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTG-GTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAA-CCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGA</genome_strand>
        <mrna_strand>CTTTACTCTTCTCCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGACAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCCTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGCGTTTATATCGAGCAAGGCAGGGGATCGATTAGTGTGATTAACCCCTGGCTGTGCCGAGACTTTCCAGTCTCAGACCTTCCACGTTGGCCGAATGGCAGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719908" ref_strand="+" ref_description="SGN-E719908 [FC09AH06]">
      <seq>agctttactcttctctgcttttctcttatctgcagcaaatgcatatagactatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgccaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttccaggctggccgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157215" stop="156231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156915" g_stop="156531" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E719908" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156915" e_stop="156531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATG</genome_strand>
        <mrna_strand>AGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACTATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGCCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719665" ref_strand="+" ref_description="SGN-E719665 [FC08CB03]">
      <seq>ttatataatcaattagtaataaacaataaaaactccttagccatggcggtctctactagggtcttgttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttctgcagggtcagcacggtcaaagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcaaagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagtgtgttggagttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattgattagtgtgattaaccctggttgtgccgagactttccagtctcagaccttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157283" stop="156244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156983" g_stop="156544" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E719665" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156983" e_stop="156544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCA</genome_strand>
        <mrna_strand>TTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCTGCAGGGTCAGCACGGTCAAAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAAAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698704" ref_strand="+" ref_description="SGN-E698704 [FA07BD02]">
      <seq>ttagctttactcttctctgcttttctcttatctgcagcaaatgcatatagacaatatccgtttcagcagggtcagcacggtcagagaagcattcctctgactcaagctcaacaatgccgcttacagaggcttactggaagccagccctctcagcgcattgagtcagagggcgggtacactgaggtgtgggatgagaatgaggagcaattccagcgtgttggacttgctcctatgaggaatgttattcgtcaaaattctctctctttgcctaattttcatcccatgcctcgcttggtttatatcgagcaaggcaggggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157217" stop="156297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156917" g_stop="156597" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E698704" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156917" e_stop="156597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTG</genome_strand>
        <mrna_strand>TTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGCGTGTTGGACTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698705" ref_strand="+" ref_description="SGN-E698705 [FA07BD04]">
      <seq>ccccttattttttatattatataatcaattagtaataaacaaccccaactccttagccatggcggtctctactagggtctctgttagctttactcttctctgcttttctcttatctgcaccaaatgcatatacacaatatccgcttcagcagggtcagcacggtcacacaagcattcctctgactcaagctcaacaatgccgcttacacaggcttactggaagccagccctctcagcgcattgactcagagggcgggtacactgaggtgtgggatgacaatgacgagcacttccagtgtgctggagttgctcctatgaggattgttattcgctaaaattctctctctttgcctaattttcttcccatgcctcgcttggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="-" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="157294" stop="156321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="156999" g_stop="156620" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="-" ref_id="SGN-E698705" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="156999" e_stop="156620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCT-TGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTT</genome_strand>
        <mrna_strand>CCCCTTATTTTTTATATTATATAATCAATTAGTAATAAACAACCCCAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTCTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCACCAAATGCATATACACAATATCCGCTTCAGCAGGGTCAGCACGGTCACACAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACACAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGACTCAGAGGGCGGGTACACTGAGGTGTGGGATGACAATGACGAGCACTTCCAGTGTGCTGGAGTTGCTCCTATGAGGATTGTTATTCGCTAAAATTCTCTCTCTTTGCCTAATTTTCTTCCCATGCCTCGCTTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705646" ref_strand="+" ref_description="SGN-E705646 [FA27DA03]">
      <seq>cggtttttaagaaatagaaaacaaaatggacataagtctgctgaaaagaaacgcattctttaaactacctaatttttgtcctctttttgcactaaactatagcgtaaaatttaagccagtgaatttatattattacaccaatgactataactactagtctactactactagtactatttatatatcttatatctcagccttttgttatatttctccccttattcataactgaatttgcattgtttcaaattcaatcaccatgtattgcttaaacttgcgtagagtactccttccaactcaaaaaatgtggaagtttttttccaccaaattacaaatcaatttccacaaagtactcaatagatccaaagtcattaagaaagccaagaatccaaatcctttatgcatcaagaaactagccccgtctcttgtctttcgagttcaattcaaaactaaacgttcaaacaataagttcaaatacaagtcgaaattcagacctactctgaaatttcacaagaaatcagcaccagtatatatagatcaacttttcattgagaatatatctgattctgtggtgaagaacaactttggccaaactagtatgattacgacaaagaagaaggagcataaacaagtttgcataacggaaaccgaacaaggtgagataatccatgaaggggaaagtagtagtagtagtagtagtgtaacgaatgatgagatgtgggaatcgttgacattggcatctccacaattgcattgtattaatgaaagagcagaagagttcatagctaaatttcgtgcagacatgctgcgtcaagagaatatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09SLm0140D21-QumWz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09SLm0140D21.1" temp_strand="+" temp_description="C09SLm0140D21.1  AC234360.1 htgs_phase:1 submitted_to_sgn_as:gnl|gbrgsp|C09SLm0140D21 upload_account_name:spain (1 - 163628)">
        <position start="159866" stop="161291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160166" g_stop="160991" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09SLm0140D21.1" gen_strand="+" ref_id="SGN-E705646" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09SLm0140D21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160166" e_stop="160991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</genome_strand>
        <mrna_strand>CGGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>209</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="157020" PGL_stop="154931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="157020" e_stop="156339"/>
            <exon e_start="156057" e_stop="155596"/>
            <exon e_start="155495" e_stop="154931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="157020" e_stop="156339" e_length="682"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="156057" e_stop="155596" e_length="462"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="155495" e_stop="154931" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157020" stop="156339"/>
              <exon start="156057" stop="155927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157020" stop="156339"/>
              <exon start="156057" stop="155942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157020" stop="156339"/>
              <exon start="156057" stop="155963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157020" stop="156339"/>
              <exon start="156057" stop="155996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157007" stop="156339"/>
              <exon start="156057" stop="155864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157007" stop="156339"/>
              <exon start="156057" stop="155902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157007" stop="156339"/>
              <exon start="156057" stop="155990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157004" stop="156406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156999" stop="156620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156994" stop="156339"/>
              <exon start="156057" stop="156044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156993" stop="156339"/>
              <exon start="156057" stop="155888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156993" stop="156339"/>
              <exon start="156057" stop="155924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156993" stop="156339"/>
              <exon start="156057" stop="155935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156993" stop="156339"/>
              <exon start="156057" stop="155945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156991" stop="156339"/>
              <exon start="156057" stop="155832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156991" stop="156339"/>
              <exon start="156057" stop="155833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156991" stop="156339"/>
              <exon start="156057" stop="155835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156991" stop="156339"/>
              <exon start="156057" stop="155841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156991" stop="156339"/>
              <exon start="156057" stop="155959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156989" stop="156339"/>
              <exon start="156057" stop="155871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156988" stop="156339"/>
              <exon start="156057" stop="156000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156986" stop="156480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156985" stop="156416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156984" stop="156339"/>
              <exon start="156057" stop="155866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156983" stop="156544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156982" stop="156339"/>
              <exon start="156057" stop="155796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156980" stop="156500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156979" stop="156339"/>
              <exon start="156057" stop="155830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156979" stop="156339"/>
              <exon start="156057" stop="155841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156979" stop="156339"/>
              <exon start="156057" stop="155866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156979" stop="156339"/>
              <exon start="156057" stop="155960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156978" stop="156421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156974" stop="156339"/>
              <exon start="156057" stop="155844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156974" stop="156339"/>
              <exon start="156057" stop="155958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156974" stop="156373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156973" stop="156339"/>
              <exon start="156057" stop="155841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156973" stop="156339"/>
              <exon start="156057" stop="155851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156973" stop="156361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156973" stop="156506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156971" stop="156339"/>
              <exon start="156057" stop="155799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156968" stop="156339"/>
              <exon start="156057" stop="155832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156968" stop="156339"/>
              <exon start="156057" stop="155835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156968" stop="156339"/>
              <exon start="156057" stop="155871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156968" stop="156339"/>
              <exon start="156057" stop="155888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156965" stop="156510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156964" stop="156339"/>
              <exon start="156057" stop="156027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156961" stop="156339"/>
              <exon start="156057" stop="155756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156961" stop="156339"/>
              <exon start="156057" stop="155787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156961" stop="156339"/>
              <exon start="156057" stop="155868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156961" stop="156339"/>
              <exon start="156057" stop="155921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156961" stop="156339"/>
              <exon start="156057" stop="155935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156958" stop="156339"/>
              <exon start="156057" stop="155852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156958" stop="156339"/>
              <exon start="156057" stop="155864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156958" stop="156339"/>
              <exon start="156057" stop="156036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156954" stop="156474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156951" stop="156339"/>
              <exon start="156057" stop="155833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156949" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156945" stop="156339"/>
              <exon start="156057" stop="156025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156943" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156939" stop="156339"/>
              <exon start="156057" stop="155831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156937" stop="156339"/>
              <exon start="156057" stop="155959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156931" stop="156343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156925" stop="156339"/>
              <exon start="156057" stop="155831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156924" stop="156339"/>
              <exon start="156057" stop="155835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156923" stop="156339"/>
              <exon start="156057" stop="155734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156923" stop="156339"/>
              <exon start="156057" stop="155831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156917" stop="156597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156915" stop="156339"/>
              <exon start="156057" stop="156036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156915" stop="156531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156913" stop="156523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156906" stop="156339"/>
              <exon start="156057" stop="155765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156899" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156893" stop="156339"/>
              <exon start="156057" stop="155805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156852" stop="156339"/>
              <exon start="156057" stop="155645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156851" stop="156339"/>
              <exon start="156057" stop="155693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156843" stop="156339"/>
              <exon start="156057" stop="155731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156813" stop="156339"/>
              <exon start="156057" stop="155677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156789" stop="156339"/>
              <exon start="156057" stop="155647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156789" stop="156339"/>
              <exon start="156057" stop="155672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156774" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156774" stop="156339"/>
              <exon start="156057" stop="155691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156767" stop="156339"/>
              <exon start="156057" stop="155600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156726" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156713" stop="156339"/>
              <exon start="156057" stop="155900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156705" stop="156339"/>
              <exon start="156057" stop="155600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156696" stop="156339"/>
              <exon start="156057" stop="155805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156695" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156685" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156680" stop="156339"/>
              <exon start="156057" stop="155669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156677" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156670" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156669" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156667" stop="156339"/>
              <exon start="156057" stop="155759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156628" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156627" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156626" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709573" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156617" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156613" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156601" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156553" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156540" stop="156339"/>
              <exon start="156057" stop="155927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156540" stop="156339"/>
              <exon start="156057" stop="155980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156515" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156507" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156497" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156469" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156444" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156443" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156443" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156443" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156443" stop="156339"/>
              <exon start="156057" stop="155621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156433" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156420" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156414" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156408" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156408" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156405" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156381" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156378" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156366" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156365" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156352" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156350" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156350" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156349" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156345" stop="156339"/>
              <exon start="156057" stop="155596"/>
              <exon start="155495" stop="155050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156043" stop="155596"/>
              <exon start="155495" stop="155090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156019" stop="155596"/>
              <exon start="155495" stop="155279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156010" stop="155596"/>
              <exon start="155495" stop="155079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156000" stop="155596"/>
              <exon start="155495" stop="154972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553478" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156000" stop="155596"/>
              <exon start="155495" stop="154991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155988" stop="155596"/>
              <exon start="155495" stop="154985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155966" stop="155596"/>
              <exon start="155495" stop="155054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155964" stop="155596"/>
              <exon start="155495" stop="154964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155947" stop="155596"/>
              <exon start="155495" stop="155039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155945" stop="155596"/>
              <exon start="155495" stop="155010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155943" stop="155596"/>
              <exon start="155495" stop="154960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555774" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155909" stop="155596"/>
              <exon start="155495" stop="154965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553515" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155898" stop="155596"/>
              <exon start="155495" stop="154971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155876" stop="155596"/>
              <exon start="155495" stop="154964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155863" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155863" stop="155596"/>
              <exon start="155495" stop="154968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155863" stop="155596"/>
              <exon start="155495" stop="154970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155863" stop="155596"/>
              <exon start="155495" stop="154973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155863" stop="155596"/>
              <exon start="155495" stop="154973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155860" stop="155596"/>
              <exon start="155495" stop="154971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155803" stop="155596"/>
              <exon start="155495" stop="154955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155803" stop="155596"/>
              <exon start="155495" stop="154974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155791" stop="155596"/>
              <exon start="155495" stop="154960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155786" stop="155596"/>
              <exon start="155495" stop="154962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553785" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155786" stop="155596"/>
              <exon start="155495" stop="154976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555424" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155776" stop="155596"/>
              <exon start="155495" stop="154948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155773" stop="155596"/>
              <exon start="155495" stop="155148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155771" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155744" stop="155596"/>
              <exon start="155495" stop="154961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155744" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155744" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155744" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155744" stop="155596"/>
              <exon start="155495" stop="154977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155722" stop="155596"/>
              <exon start="155495" stop="154934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155714" stop="155596"/>
              <exon start="155495" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155710" stop="155596"/>
              <exon start="155495" stop="154931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155697" stop="155596"/>
              <exon start="155495" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155645" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155630" stop="155596"/>
              <exon start="155495" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155456" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155429" stop="154955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155416" stop="154967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155412" stop="154962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155407" stop="154931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155384" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155370" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCCAAATCTCATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG : GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG : AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAAA</gDNA_template>
            <first_frame> F  L  Q  I  S  S  H  L  C  I  F  Y  I  I  *  S  I  S  N  K  Q  *  K  L  L  S  H  G  G  L  Y  *  G  L  V  S  F  T  L  L  C  F  S  L  I  C  S  K  C  I  *  T  I  S  V  S  A  G  S  A  R  S  E  K  H  S  S  D  S  S  S  T  M  P  L  T  E  A  Y  W  K  P  A  L  S  A  H  *  V  R  G  R  V  H  *  G  V  G  *  E  *  G  A  I  P  V  C  W  S  C  S  Y  E  E  C  Y  S  S  K  F  S  L  F  A  *  F  S  S  H  A  S  L  G  L  Y  R  A  R  Q  G  I  D  *  C  D  *  P  W  L  C  R  D  F  P  V  S  D  L  P  G  W  P  N  G  R  *  R  E  G  *  T  P  R  K  R  P  A  P  E  G  P  P  H  S  P  R  R  R  C  G  N  S  S  W  C  C  S  L  V  L  Q  R  R  *  G  R  A  S  S  R  L  H  *  R  S  Q  P  S  V  Q  P  A  *  S  E  L  Q   : G  I  L  L  G  R  W  S  T  R  N  *  W  K  A  N  W  C  R  K  A  K  H  T  E  V  P  E  H  F  P  C  F  *  H  R  T  D  G  R  G  L  Q  H  P  R  R  D  C  *  E  D  A  R  R  T  E  R  T  W  T  N  C  *  C  Q  G  R  N  E  H  D  *  G  *  *  R  R  R  G  I  R  R  A  I  T  T  R  T  A  M  V  G  R  S  N  W  K  W  L  G  R  K  H  L  H  N  E  N  P  H  Q  H  G  Y  S  K  T  S  *  Y  L  L  K  A  S  W  Q  N  *  A  C  *  *  P  K  F  S  H  P  *  R  H  G  H  E  C  L  *  R  N  P  I  S   : E  R  T  D  E  P  S  L  V  S  E  W  T  Q  R  D  L  R  A  K  R  R  C  T  S  A  G  S  R  P  H  R  A  T  S  D  E  *  Q  G  K  S  R  R  N  V  C  S  P  S  V  L  C  L  N  S  E  S  R  A  K  W  I  *  I  R  G  V  *  D  K  Q  S  T  N  E  Q  P  T  C  R  L  H  I  S  D  *  S  N  A  N  *  G  P  H  K  R  V  P  D  I  A  K  *  S  T  T  F  E  N  E  Q  R  R  R  K  L  P  A  I  S  P  E  K  V  I  L  K  W  L  *  C  V  I  I  P  P  W  L  S  P  S  S  T  S  F  *  S  L  F  L  G  K  D  E  A  R  A  T  C  I  *  E  Q  I  M  *  R  I  K  L  L  P  F  C  T  *  I  S  S  K  M  L  I  L  S  V  Q   </first_frame>
            <second_frame>  F  S  K  S  H  L  I  F  V  F  F  I  L  Y  N  Q  L  V  I  N  N  K  N  S  L  A  M  A  V  S  T  R  V  L  L  A  L  L  F  S  A  F  L  L  S  A  A  N  A  Y  R  Q  Y  P  F  Q  Q  G  Q  H  G  Q  R  S  I  P  L  T  Q  A  Q  Q  C  R  L  Q  R  L  T  G  S  Q  P  S  Q  R  I  E  S  E  G  G  Y  T  E  V  W  D  E  N  E  E  Q  F  Q  C  V  G  V  A  P  M  R  N  V  I  R  Q  N  S  L  S  L  P  N  F  H  P  M  P  R  L  V  Y  I  E  Q  G  R  G  L  I  S  V  I  N  P  G  C  A  E  T  F  Q  S  Q  T  F  Q  A  G  R  M  A  G  E  E  R  G  E  R  R  G  N  D  Q  H  Q  K  V  H  R  I  R  Q  G  D  V  V  A  I  P  A  G  A  A  H  W  C  Y  N  D  G  E  E  E  L  V  A  V  S  I  N  D  L  N  H  R  S  N  Q  L  D  Q  N  F  R  :  A  F  Y  L  A  G  G  V  Q  E  T  S  G  R  Q  I  G  V  G  K  Q  S  T  Q  K  F  Q  N  I  F  R  A  F  N  T  E  L  M  A  E  A  F  N  I  P  V  E  I  V  R  R  M  Q  E  E  Q  N  E  R  G  L  I  V  N  V  R  E  G  M  S  M  I  R  A  D  E  E  E  E  E  F  E  G  R  S  Q  R  G  Q  R  W  W  A  E  V  T  G  N  G  L  E  E  N  I  C  T  M  K  I  R  T  N  M  D  T  Q  R  R  A  D  I  Y  S  R  Q  A  G  K  I  K  H  V  N  S  Q  N  F  P  I  L  R  D  M  D  M  S  A  S  K  G  T  L  Y  P  :  N  A  L  M  S  P  H  W  S  V  N  G  H  S  V  I  Y  V  Q  R  G  D  A  Q  V  Q  V  V  D  H  T  G  Q  Q  V  M  N  D  R  V  N  Q  G  E  M  F  V  V  P  Q  Y  Y  A  S  T  V  K  A  G  Q  N  G  F  E  F  A  V  F  R  T  S  S  Q  P  M  N  S  Q  L  A  G  Y  T  S  V  I  R  A  M  P  I  E  V  L  T  N  A  Y  Q  I  S  P  N  E  A  Q  R  L  K  M  N  R  G  G  E  S  F  L  L  S  P  Q  R  R  S  F  *  N  G  F  N  V  *  *  S  H  L  G  Y  R  L  V  V  Q  V  S  S  L  C  F  *  A  K  M  K  Q  E  R  L  V  F  R  S  K  *  C  N  E  *  S  S  C  L  F  V  P  K  S  H  P  R  C  *  F  S  L  C  K  </second_frame>
            <third_frame>   S  P  N  L  I  S  S  L  Y  F  L  Y  Y  I  I  N  *  *  *  T  I  K  T  P  *  P  W  R  S  L  L  G  S  C  *  L  Y  S  S  L  L  F  S  Y  L  Q  Q  M  H  I  D  N  I  R  F  S  R  V  S  T  V  R  E  A  F  L  *  L  K  L  N  N  A  A  Y  R  G  L  L  E  A  S  P  L  S  A  L  S  Q  R  A  G  T  L  R  C  G  M  R  M  R  S  N  S  S  V  L  E  L  L  L  *  G  M  L  F  V  K  I  L  S  L  C  L  I  F  I  P  C  L  A  W  F  I  S  S  K  A  G  D  *  L  V  *  L  T  L  V  V  P  R  L  S  S  L  R  P  S  R  L  A  E  W  Q  V  K  R  G  V  N  A  A  E  T  T  S  T  R  R  S  T  A  F  A  K  A  T  L  W  Q  F  Q  L  V  L  L  I  G  A  T  T  T  V  R  K  S  *  *  P  S  P  L  T  I  S  T  I  G  P  T  S  L  I  R  T  S  G :   H  S  T  W  P  V  E  Y  K  K  L  V  E  G  K  L  V  *  E  S  K  A  H  R  S  S  R  T  F  S  V  L  L  T  Q  N  *  W  Q  R  P  S  T  S  P  *  R  L  L  G  G  C  K  K  N  R  T  N  V  D  *  L  L  M  S  G  K  E  *  A  *  L  G  L  M  K  K  K  R  N  S  K  G  D  H  N  E  D  S  D  G  G  Q  K  *  L  E  M  A  W  K  K  T  F  A  Q  *  K  S  A  P  T  W  I  L  K  D  E  L  I  S  T  Q  G  K  L  A  K  L  S  M  L  I  A  K  I  F  P  S  L  E  T  W  T  *  V  P  L  K  E  P  Y  I  R :   T  H  *  *  A  L  T  G  Q  *  M  D  T  A  *  S  T  C  K  E  E  M  H  K  C  R  *  *  T  T  P  G  N  K  *  *  M  T  G  *  I  K  E  K  C  L  *  S  L  S  T  M  P  Q  Q  *  K  Q  G  K  M  D  L  N  S  R  C  L  G  Q  A  V  N  Q  *  T  A  N  L  Q  V  T  H  Q  *  L  E  Q  C  Q  L  R  S  S  Q  T  R  T  R  Y  R  Q  M  K  H  N  V  *  K  *  T  E  E  E  K  A  S  C  Y  L  P  R  E  G  H  S  K  M  A  L  M  C  N  N  P  T  L  A  I  A  *  *  Y  K  F  L  V  F  V  F  R  Q  R  *  S  K  S  D  L  Y  L  G  A  N  N  V  T  N  K  A  P  A  F  L  Y  L  N  L  I  Q  D  V  N  S  L  C  A  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0140D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="157019" stop="156339"/>
                    <exon start="156057" stop="155596"/>
                    <exon start="155495" stop="155115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1521</number_coding_nucleotides>
                  <number_encoded_amino_acids>507</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKSHLIFVFFILYNQLVINNKNSLAMAVSTRVLLALLFSAFLLSAANAYRQYPFQQGQHGQRSIPLTQAQQCRLQRLTGSQPSQRIESEGGYTEVWDENEEQFQCVGVAPMRNVIRQNSLSLPNFHPMPRLVYIEQGRGLISVINPGCAETFQSQTFQAGRMAGEERGERRGNDQHQKVHRIRQGDVVAIPAGAAHWCYNDGEEELVAVSINDLNHRSNQLDQNFRAFYLAGGVQETSGRQIGVGKQSTQKFQNIFRAFNTELMAEAFNIPVEIVRRMQEEQNERGLIVNVREGMSMIRADEEEEEFEGRSQRGQRWWAEVTGNGLEENICTMKIRTNMDTQRRADIYSRQAGKIKHVNSQNFPILRDMDMSASKGTLYPNALMSPHWSVNGHSVIYVQRGDAQVQVVDHTGQQVMNDRVNQGEMFVVPQYYASTVKAGQNGFEFAVFRTSSQPMNSQLAGYTSVIRAMPIEVLTNAYQISPNEAQRLKMNRGGESFLLSPQRRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="157020" e_stop="156339"/>
            <exon e_start="156057" e_stop="155854"/>
            <exon e_start="155273" e_stop="154932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="157020" e_stop="156339" e_length="682"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="156338" i_stop="156058" i_length="281"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="156057" e_stop="155854" e_length="204"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="155853" i_stop="155274" i_length="580"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="155273" e_stop="154932" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157020" stop="156339"/>
              <exon start="156057" stop="155927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157020" stop="156339"/>
              <exon start="156057" stop="155942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157020" stop="156339"/>
              <exon start="156057" stop="155963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157020" stop="156339"/>
              <exon start="156057" stop="155996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157007" stop="156339"/>
              <exon start="156057" stop="155864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157007" stop="156339"/>
              <exon start="156057" stop="155902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157007" stop="156339"/>
              <exon start="156057" stop="155990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157006" stop="156339"/>
              <exon start="156057" stop="155985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="157004" stop="156406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156999" stop="156620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156994" stop="156339"/>
              <exon start="156057" stop="156044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156993" stop="156339"/>
              <exon start="156057" stop="155888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156993" stop="156339"/>
              <exon start="156057" stop="155924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156993" stop="156339"/>
              <exon start="156057" stop="155935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156993" stop="156339"/>
              <exon start="156057" stop="155945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156991" stop="156339"/>
              <exon start="156057" stop="155959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156989" stop="156339"/>
              <exon start="156057" stop="155871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156988" stop="156339"/>
              <exon start="156057" stop="156000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156986" stop="156480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156985" stop="156416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156984" stop="156339"/>
              <exon start="156057" stop="155866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156983" stop="156544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156980" stop="156500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156979" stop="156339"/>
              <exon start="156057" stop="155866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156979" stop="156339"/>
              <exon start="156057" stop="155960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156978" stop="156421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156339"/>
              <exon start="156057" stop="155923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156976" stop="156339"/>
              <exon start="156057" stop="155897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156974" stop="156339"/>
              <exon start="156057" stop="155958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156974" stop="156373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156973" stop="156361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156973" stop="156506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156968" stop="156339"/>
              <exon start="156057" stop="155871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156968" stop="156339"/>
              <exon start="156057" stop="155888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156965" stop="156510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156964" stop="156339"/>
              <exon start="156057" stop="156027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156961" stop="156339"/>
              <exon start="156057" stop="155868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156961" stop="156339"/>
              <exon start="156057" stop="155921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156961" stop="156339"/>
              <exon start="156057" stop="155935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156958" stop="156339"/>
              <exon start="156057" stop="155864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156958" stop="156339"/>
              <exon start="156057" stop="156036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156954" stop="156474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156949" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156945" stop="156339"/>
              <exon start="156057" stop="156025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156943" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156937" stop="156339"/>
              <exon start="156057" stop="155959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156931" stop="156343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156917" stop="156597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156915" stop="156339"/>
              <exon start="156057" stop="156036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156915" stop="156531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156913" stop="156523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156899" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156713" stop="156339"/>
              <exon start="156057" stop="155900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156659" stop="156339"/>
              <exon start="156057" stop="155854"/>
              <exon start="155273" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156540" stop="156339"/>
              <exon start="156057" stop="155927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156540" stop="156339"/>
              <exon start="156057" stop="155980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCCAAATCTCATCTCATCTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGAGGAAGAGCTAGTAGCCGTCTCCATTAACGATCTCAACCATCGGTCCAACCAGCTTGATCAGAACTTCAGG : GCATTCTACTTGGCCGGTGGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGA : ATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAA</gDNA_template>
            <first_frame> F  L  Q  I  S  S  H  L  C  I  F  Y  I  I  *  S  I  S  N  K  Q  *  K  L  L  S  H  G  G  L  Y  *  G  L  V  S  F  T  L  L  C  F  S  L  I  C  S  K  C  I  *  T  I  S  V  S  A  G  S  A  R  S  E  K  H  S  S  D  S  S  S  T  M  P  L  T  E  A  Y  W  K  P  A  L  S  A  H  *  V  R  G  R  V  H  *  G  V  G  *  E  *  G  A  I  P  V  C  W  S  C  S  Y  E  E  C  Y  S  S  K  F  S  L  F  A  *  F  S  S  H  A  S  L  G  L  Y  R  A  R  Q  G  I  D  *  C  D  *  P  W  L  C  R  D  F  P  V  S  D  L  P  G  W  P  N  G  R  *  R  E  G  *  T  P  R  K  R  P  A  P  E  G  P  P  H  S  P  R  R  R  C  G  N  S  S  W  C  C  S  L  V  L  Q  R  R  *  G  R  A  S  S  R  L  H  *  R  S  Q  P  S  V  Q  P  A  *  S  E  L  Q   : G  I  L  L  G  R  W  S  T  R  N  *  W  K  A  N  W  C  R  K  A  K  H  T  E  V  P  E  H  F  P  C  F  *  H  R  T  D  G  R  G  L  Q  H  P  R  R  D  C  *  E  D  A  R  R  T  E  R  T  W  T  N  C  *  C  Q  G  R   : N  E  Q  P  T  C  R  L  H  I  S  D  *  S  N  A  N  *  G  P  H  K  R  V  P  D  I  A  K  *  S  T  T  F  E  N  E  Q  R  R  R  K  L  P  A  I  S  P  E  K  V  I  L  K  W  L  *  C  V  I  I  P  P  W  L  S  P  S  S  T  S  F  *  S  L  F  L  G  K  D  E  A  R  A  T  C  I  *  E  Q  I  M  *  R  I  K  L  L  P  F  C  T  *  I  S  S  K  M  L  I  L  S  V  Q  </first_frame>
            <second_frame>  F  S  K  S  H  L  I  F  V  F  F  I  L  Y  N  Q  L  V  I  N  N  K  N  S  L  A  M  A  V  S  T  R  V  L  L  A  L  L  F  S  A  F  L  L  S  A  A  N  A  Y  R  Q  Y  P  F  Q  Q  G  Q  H  G  Q  R  S  I  P  L  T  Q  A  Q  Q  C  R  L  Q  R  L  T  G  S  Q  P  S  Q  R  I  E  S  E  G  G  Y  T  E  V  W  D  E  N  E  E  Q  F  Q  C  V  G  V  A  P  M  R  N  V  I  R  Q  N  S  L  S  L  P  N  F  H  P  M  P  R  L  V  Y  I  E  Q  G  R  G  L  I  S  V  I  N  P  G  C  A  E  T  F  Q  S  Q  T  F  Q  A  G  R  M  A  G  E  E  R  G  E  R  R  G  N  D  Q  H  Q  K  V  H  R  I  R  Q  G  D  V  V  A  I  P  A  G  A  A  H  W  C  Y  N  D  G  E  E  E  L  V  A  V  S  I  N  D  L  N  H  R  S  N  Q  L  D  Q  N  F  R  :  A  F  Y  L  A  G  G  V  Q  E  T  S  G  R  Q  I  G  V  G  K  Q  S  T  Q  K  F  Q  N  I  F  R  A  F  N  T  E  L  M  A  E  A  F  N  I  P  V  E  I  V  R  R  M  Q  E  E  Q  N  E  R  G  L  I  V  N  V  R  E  G  :  M  N  S  Q  L  A  G  Y  T  S  V  I  R  A  M  P  I  E  V  L  T  N  A  Y  Q  I  S  P  N  E  A  Q  R  L  K  M  N  R  G  G  E  S  F  L  L  S  P  Q  R  R  S  F  *  N  G  F  N  V  *  *  S  H  L  G  Y  R  L  V  V  Q  V  S  S  L  C  F  *  A  K  M  K  Q  E  R  L  V  F  R  S  K  *  C  N  E  *  S  S  C  L  F  V  P  K  S  H  P  R  C  *  F  S  L  C  K </second_frame>
            <third_frame>   S  P  N  L  I  S  S  L  Y  F  L  Y  Y  I  I  N  *  *  *  T  I  K  T  P  *  P  W  R  S  L  L  G  S  C  *  L  Y  S  S  L  L  F  S  Y  L  Q  Q  M  H  I  D  N  I  R  F  S  R  V  S  T  V  R  E  A  F  L  *  L  K  L  N  N  A  A  Y  R  G  L  L  E  A  S  P  L  S  A  L  S  Q  R  A  G  T  L  R  C  G  M  R  M  R  S  N  S  S  V  L  E  L  L  L  *  G  M  L  F  V  K  I  L  S  L  C  L  I  F  I  P  C  L  A  W  F  I  S  S  K  A  G  D  *  L  V  *  L  T  L  V  V  P  R  L  S  S  L  R  P  S  R  L  A  E  W  Q  V  K  R  G  V  N  A  A  E  T  T  S  T  R  R  S  T  A  F  A  K  A  T  L  W  Q  F  Q  L  V  L  L  I  G  A  T  T  T  V  R  K  S  *  *  P  S  P  L  T  I  S  T  I  G  P  T  S  L  I  R  T  S  G :   H  S  T  W  P  V  E  Y  K  K  L  V  E  G  K  L  V  *  E  S  K  A  H  R  S  S  R  T  F  S  V  L  L  T  Q  N  *  W  Q  R  P  S  T  S  P  *  R  L  L  G  G  C  K  K  N  R  T  N  V  D  *  L  L  M  S  G  K  E :   *  T  A  N  L  Q  V  T  H  Q  *  L  E  Q  C  Q  L  R  S  S  Q  T  R  T  R  Y  R  Q  M  K  H  N  V  *  K  *  T  E  E  E  K  A  S  C  Y  L  P  R  E  G  H  S  K  M  A  L  M  C  N  N  P  T  L  A  I  A  *  *  Y  K  F  L  V  F  V  F  R  Q  R  *  S  K  S  D  L  Y  L  G  A  N  N  V  T  N  K  A  P  A  F  L  Y  L  N  L  I  Q  D  V  N  S  L  C  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0140D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="157019" stop="156339"/>
                    <exon start="156057" stop="155854"/>
                    <exon start="155273" stop="155115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSKSHLIFVFFILYNQLVINNKNSLAMAVSTRVLLALLFSAFLLSAANAYRQYPFQQGQHGQRSIPLTQAQQCRLQRLTGSQPSQRIESEGGYTEVWDENEEQFQCVGVAPMRNVIRQNSLSLPNFHPMPRLVYIEQGRGLISVINPGCAETFQSQTFQAGRMAGEERGERRGNDQHQKVHRIRQGDVVAIPAGAAHWCYNDGEEELVAVSINDLNHRSNQLDQNFRAFYLAGGVQETSGRQIGVGKQSTQKFQNIFRAFNTELMAEAFNIPVEIVRRMQEEQNERGLIVNVREGMNSQLAGYTSVIRAMPIEVLTNAYQISPNEAQRLKMNRGGESFLLSPQRRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="156999" e_stop="156409"/>
            <exon e_start="156039" e_stop="155596"/>
            <exon e_start="155495" e_stop="154931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="156999" e_stop="156409" e_length="591"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="156408" i_stop="156040" i_length="369"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="156039" e_stop="155596" e_length="444"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="155595" i_stop="155496" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="155495" e_stop="154931" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156999" stop="156620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156986" stop="156480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156985" stop="156416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156983" stop="156544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156980" stop="156500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156978" stop="156421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156409"/>
              <exon start="156039" stop="155844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156977" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156973" stop="156506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156965" stop="156510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156954" stop="156474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156949" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156943" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156917" stop="156597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156915" stop="156531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156913" stop="156523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156899" stop="156437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156019" stop="155596"/>
              <exon start="155495" stop="155279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156010" stop="155596"/>
              <exon start="155495" stop="155079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156000" stop="155596"/>
              <exon start="155495" stop="154972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553478" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="156000" stop="155596"/>
              <exon start="155495" stop="154991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155988" stop="155596"/>
              <exon start="155495" stop="154985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155966" stop="155596"/>
              <exon start="155495" stop="155054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155964" stop="155596"/>
              <exon start="155495" stop="154964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155947" stop="155596"/>
              <exon start="155495" stop="155039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155945" stop="155596"/>
              <exon start="155495" stop="155010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155943" stop="155596"/>
              <exon start="155495" stop="154960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555774" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155909" stop="155596"/>
              <exon start="155495" stop="154965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553515" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155898" stop="155596"/>
              <exon start="155495" stop="154971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155876" stop="155596"/>
              <exon start="155495" stop="154964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155863" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155863" stop="155596"/>
              <exon start="155495" stop="154968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155863" stop="155596"/>
              <exon start="155495" stop="154970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155863" stop="155596"/>
              <exon start="155495" stop="154973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155863" stop="155596"/>
              <exon start="155495" stop="154973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155860" stop="155596"/>
              <exon start="155495" stop="154971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155803" stop="155596"/>
              <exon start="155495" stop="154955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155803" stop="155596"/>
              <exon start="155495" stop="154974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155791" stop="155596"/>
              <exon start="155495" stop="154960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155786" stop="155596"/>
              <exon start="155495" stop="154962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553785" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155786" stop="155596"/>
              <exon start="155495" stop="154976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555424" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155776" stop="155596"/>
              <exon start="155495" stop="154948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155773" stop="155596"/>
              <exon start="155495" stop="155148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155771" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155744" stop="155596"/>
              <exon start="155495" stop="154961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155744" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155744" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155744" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155744" stop="155596"/>
              <exon start="155495" stop="154977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155722" stop="155596"/>
              <exon start="155495" stop="154934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155714" stop="155596"/>
              <exon start="155495" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155710" stop="155596"/>
              <exon start="155495" stop="154931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155697" stop="155596"/>
              <exon start="155495" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155645" stop="155596"/>
              <exon start="155495" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155630" stop="155596"/>
              <exon start="155495" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155456" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155429" stop="154955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155416" stop="154967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155412" stop="154962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155407" stop="154931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155384" stop="154966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155370" stop="154932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715439" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGTATTTTTTATATTATATAATCAATTAGTAATAAACAATAAAAACTCCTTAGCCATGGCGGTCTCTACTAGGGTCTTGTTAGCTTTACTCTTCTCTGCTTTTCTCTTATCTGCAGCAAATGCATATAGACAATATCCGTTTCAGCAGGGTCAGCACGGTCAGAGAAGCATTCCTCTGACTCAAGCTCAACAATGCCGCTTACAGAGGCTTACTGGAAGCCAGCCCTCTCAGCGCATTGAGTCAGAGGGCGGGTACACTGAGGTGTGGGATGAGAATGAGGAGCAATTCCAGTGTGTTGGAGTTGCTCCTATGAGGAATGTTATTCGTCAAAATTCTCTCTCTTTGCCTAATTTTCATCCCATGCCTCGCTTGGTTTATATCGAGCAAGGCAGGGGATTGATTAGTGTGATTAACCCTGGTTGTGCCGAGACTTTCCAGTCTCAGACCTTCCAGGCTGGCCGAATGGCAGGTGAAGAGAGGGGTGAACGCCGCGGAAACGACCAGCACCAGAAGGTCCACCGCATTCGCCAAGGCGACGTTGTGGCAATTCCAGCTGGTGCTGCTCATTGGTGCTACAACGACGGTGA : GGAGTACAAGAAACTAGTGGAAGGCAAATTGGTGTAGGAAAGCAAAGCACACAGAAGTTCCAGAACATTTTCCGTGCTTTTAACACAGAACTGATGGCAGAGGCCTTCAACATCCCCGTAGAGATTGTTAGGAGGATGCAAGAAGAACAGAACGAACGTGGACTAATTGTTAATGTCAGGGAAGGAATGAGCATGATTAGGGCTGATGAAGAAGAAGAGGAATTCGAAGGGCGATCACAACGAGGACAGCGATGGTGGGCAGAAGTAACTGGAAATGGCTTGGAAGAAAACATTTGCACAATGAAAATCCGCACCAACATGGATACTCAAAGACGAGCTGATATCTACTCAAGGCAAGCTGGCAAAATTAAGCATGTTAATAGCCAAAATTTTCCCATCCTTAGAGACATGGACATGAGTGCCTCTAAAGGAACCCTATATCCG : AACGCACTGATGAGCCCTCACTGGTCAGTGAATGGACACAGCGTGATCTACGTGCAAAGAGGAGATGCACAAGTGCAGGTAGTAGACCACACCGGGCAACAAGTGATGAATGACAGGGTAAATCAAGGAGAAATGTTTGTAGTCCCTCAGTACTATGCCTCAACAGTGAAAGCAGGGCAAAATGGATTTGAATTCGCGGTGTTTAGGACAAGCAGTCAACCAATGAACAGCCAACTTGCAGGTTACACATCAGTGATTAGAGCAATGCCAATTGAGGTCCTCACAAACGCGTACCAGATATCGCCAAATGAAGCACAACGTTTGAAAATGAACAGAGGAGGAGAAAGCTTCCTGCTATCTCCCCAGAGAAGGTCATTCTAAAATGGCTTTAATGTGTAATAATCCCACCTTGGCTATCGCCTAGTAGTACAAGTTTCTAGTCTTTGTTTTTAGGCAAAGATGAAGCAAGAGCGACTTGTATTTAGGAGCAAATAATGTAACGAATAAAGCTCCTGCCTTTTTGTACCTAAATCTCATCCAAGATGTTAATTCTCTCTGTGCAAAA</gDNA_template>
            <first_frame> L  C  I  F  Y  I  I  *  S  I  S  N  K  Q  *  K  L  L  S  H  G  G  L  Y  *  G  L  V  S  F  T  L  L  C  F  S  L  I  C  S  K  C  I  *  T  I  S  V  S  A  G  S  A  R  S  E  K  H  S  S  D  S  S  S  T  M  P  L  T  E  A  Y  W  K  P  A  L  S  A  H  *  V  R  G  R  V  H  *  G  V  G  *  E  *  G  A  I  P  V  C  W  S  C  S  Y  E  E  C  Y  S  S  K  F  S  L  F  A  *  F  S  S  H  A  S  L  G  L  Y  R  A  R  Q  G  I  D  *  C  D  *  P  W  L  C  R  D  F  P  V  S  D  L  P  G  W  P  N  G  R  *  R  E  G  *  T  P  R  K  R  P  A  P  E  G  P  P  H  S  P  R  R  R  C  G  N  S  S  W  C  C  S  L  V  L  Q  R  R  *  :  G  V  Q  E  T  S  G  R  Q  I  G  V  G  K  Q  S  T  Q  K  F  Q  N  I  F  R  A  F  N  T  E  L  M  A  E  A  F  N  I  P  V  E  I  V  R  R  M  Q  E  E  Q  N  E  R  G  L  I  V  N  V  R  E  G  M  S  M  I  R  A  D  E  E  E  E  E  F  E  G  R  S  Q  R  G  Q  R  W  W  A  E  V  T  G  N  G  L  E  E  N  I  C  T  M  K  I  R  T  N  M  D  T  Q  R  R  A  D  I  Y  S  R  Q  A  G  K  I  K  H  V  N  S  Q  N  F  P  I  L  R  D  M  D  M  S  A  S  K  G  T  L  Y  P  :  N  A  L  M  S  P  H  W  S  V  N  G  H  S  V  I  Y  V  Q  R  G  D  A  Q  V  Q  V  V  D  H  T  G  Q  Q  V  M  N  D  R  V  N  Q  G  E  M  F  V  V  P  Q  Y  Y  A  S  T  V  K  A  G  Q  N  G  F  E  F  A  V  F  R  T  S  S  Q  P  M  N  S  Q  L  A  G  Y  T  S  V  I  R  A  M  P  I  E  V  L  T  N  A  Y  Q  I  S  P  N  E  A  Q  R  L  K  M  N  R  G  G  E  S  F  L  L  S  P  Q  R  R  S  F  *  N  G  F  N  V  *  *  S  H  L  G  Y  R  L  V  V  Q  V  S  S  L  C  F  *  A  K  M  K  Q  E  R  L  V  F  R  S  K  *  C  N  E  *  S  S  C  L  F  V  P  K  S  H  P  R  C  *  F  S  L  C  K  </first_frame>
            <second_frame>  F  V  F  F  I  L  Y  N  Q  L  V  I  N  N  K  N  S  L  A  M  A  V  S  T  R  V  L  L  A  L  L  F  S  A  F  L  L  S  A  A  N  A  Y  R  Q  Y  P  F  Q  Q  G  Q  H  G  Q  R  S  I  P  L  T  Q  A  Q  Q  C  R  L  Q  R  L  T  G  S  Q  P  S  Q  R  I  E  S  E  G  G  Y  T  E  V  W  D  E  N  E  E  Q  F  Q  C  V  G  V  A  P  M  R  N  V  I  R  Q  N  S  L  S  L  P  N  F  H  P  M  P  R  L  V  Y  I  E  Q  G  R  G  L  I  S  V  I  N  P  G  C  A  E  T  F  Q  S  Q  T  F  Q  A  G  R  M  A  G  E  E  R  G  E  R  R  G  N  D  Q  H  Q  K  V  H  R  I  R  Q  G  D  V  V  A  I  P  A  G  A  A  H  W  C  Y  N  D  G  E :   E  Y  K  K  L  V  E  G  K  L  V  *  E  S  K  A  H  R  S  S  R  T  F  S  V  L  L  T  Q  N  *  W  Q  R  P  S  T  S  P  *  R  L  L  G  G  C  K  K  N  R  T  N  V  D  *  L  L  M  S  G  K  E  *  A  *  L  G  L  M  K  K  K  R  N  S  K  G  D  H  N  E  D  S  D  G  G  Q  K  *  L  E  M  A  W  K  K  T  F  A  Q  *  K  S  A  P  T  W  I  L  K  D  E  L  I  S  T  Q  G  K  L  A  K  L  S  M  L  I  A  K  I  F  P  S  L  E  T  W  T  *  V  P  L  K  E  P  Y  I  R :   T  H  *  *  A  L  T  G  Q  *  M  D  T  A  *  S  T  C  K  E  E  M  H  K  C  R  *  *  T  T  P  G  N  K  *  *  M  T  G  *  I  K  E  K  C  L  *  S  L  S  T  M  P  Q  Q  *  K  Q  G  K  M  D  L  N  S  R  C  L  G  Q  A  V  N  Q  *  T  A  N  L  Q  V  T  H  Q  *  L  E  Q  C  Q  L  R  S  S  Q  T  R  T  R  Y  R  Q  M  K  H  N  V  *  K  *  T  E  E  E  K  A  S  C  Y  L  P  R  E  G  H  S  K  M  A  L  M  C  N  N  P  T  L  A  I  A  *  *  Y  K  F  L  V  F  V  F  R  Q  R  *  S  K  S  D  L  Y  L  G  A  N  N  V  T  N  K  A  P  A  F  L  Y  L  N  L  I  Q  D  V  N  S  L  C  A  K </second_frame>
            <third_frame>   L  Y  F  L  Y  Y  I  I  N  *  *  *  T  I  K  T  P  *  P  W  R  S  L  L  G  S  C  *  L  Y  S  S  L  L  F  S  Y  L  Q  Q  M  H  I  D  N  I  R  F  S  R  V  S  T  V  R  E  A  F  L  *  L  K  L  N  N  A  A  Y  R  G  L  L  E  A  S  P  L  S  A  L  S  Q  R  A  G  T  L  R  C  G  M  R  M  R  S  N  S  S  V  L  E  L  L  L  *  G  M  L  F  V  K  I  L  S  L  C  L  I  F  I  P  C  L  A  W  F  I  S  S  K  A  G  D  *  L  V  *  L  T  L  V  V  P  R  L  S  S  L  R  P  S  R  L  A  E  W  Q  V  K  R  G  V  N  A  A  E  T  T  S  T  R  R  S  T  A  F  A  K  A  T  L  W  Q  F  Q  L  V  L  L  I  G  A  T  T  T  V   : R  S  T  R  N  *  W  K  A  N  W  C  R  K  A  K  H  T  E  V  P  E  H  F  P  C  F  *  H  R  T  D  G  R  G  L  Q  H  P  R  R  D  C  *  E  D  A  R  R  T  E  R  T  W  T  N  C  *  C  Q  G  R  N  E  H  D  *  G  *  *  R  R  R  G  I  R  R  A  I  T  T  R  T  A  M  V  G  R  S  N  W  K  W  L  G  R  K  H  L  H  N  E  N  P  H  Q  H  G  Y  S  K  T  S  *  Y  L  L  K  A  S  W  Q  N  *  A  C  *  *  P  K  F  S  H  P  *  R  H  G  H  E  C  L  *  R  N  P  I  S   : E  R  T  D  E  P  S  L  V  S  E  W  T  Q  R  D  L  R  A  K  R  R  C  T  S  A  G  S  R  P  H  R  A  T  S  D  E  *  Q  G  K  S  R  R  N  V  C  S  P  S  V  L  C  L  N  S  E  S  R  A  K  W  I  *  I  R  G  V  *  D  K  Q  S  T  N  E  Q  P  T  C  R  L  H  I  S  D  *  S  N  A  N  *  G  P  H  K  R  V  P  D  I  A  K  *  S  T  T  F  E  N  E  Q  R  R  R  K  L  P  A  I  S  P  E  K  V  I  L  K  W  L  *  C  V  I  I  P  P  W  L  S  P  S  S  T  S  F  *  S  L  F  L  G  K  D  E  A  R  A  T  C  I  *  E  Q  I  M  *  R  I  K  L  L  P  F  C  T  *  I  S  S  K  M  L  I  L  S  V  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0140D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="156039" stop="155596"/>
                    <exon start="155495" stop="155115"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>822</number_coding_nucleotides>
                  <number_encoded_amino_acids>274</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVQETSGRQIGVGKQSTQKFQNIFRAFNTELMAEAFNIPVEIVRRMQEEQNERGLIVNVREGMSMIRADEEEEEFEGRSQRGQRWWAEVTGNGLEENICTMKIRTNMDTQRRADIYSRQAGKIKHVNSQNFPILRDMDMSASKGTLYPNALMSPHWSVNGHSVIYVQRGDAQVQVVDHTGQQVMNDRVNQGEMFVVPQYYASTVKAGQNGFEFAVFRTSSQPMNSQLAGYTSVIRAMPIEVLTNAYQISPNEAQRLKMNRGGESFLLSPQRRSF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0140D21.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="156586" stop="156409"/>
                    <exon start="156039" stop="156023"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLVVPRLSSLRPSRLAEWQVKRGVNAAETTSTRRSTAFAKATLWQFQLVLLIGATTTVRSTRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="160166" PGL_stop="160991"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160166" e_stop="160991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="160166" e_stop="160991" e_length="826"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160166" stop="160991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTTTTTAAGAAATAGAAAACAAAATGGACATAAGTCTGCTGAAAAGAAACGCATTCTTTAAACTACCTAATTTTTGTCCTCTTTTTGCACTAAACTATAGCGTAAAATTTAAGCCAGTGAATTTATATTATTACACCAATGACTATAACTACTAGTCTACTACTACTAGTACTATTTATATATCTTATATCTCAGCCTTTTGTTATATTTCTCCCCTTATTCATAACTGAATTTGCATTGTTTCAAATTCAATCACCATGTATTGCTTAAACTTGCGTAGAGTACTCCTTCCAACTCAAAAAATGTGGAAGTTTTTTTCCACCAAATTACAAATCAATTTCCACAAAGTACTCAATAGATCCAAAGTCATTAAGAAAGCCAAGAATCCAAATCCTTTATGCATCAAGAAACTAGCCCCGTCTCTTGTCTTTCGAGTTCAATTCAAAACTAAACGTTCAAACAATAAGTTCAAATACAAGTCGAAATTCAGACCTACTCTGAAATTTCACAAGAAATCAGCACCAGTATATATAGATCAACTTTTCATTGAGAATATATCTGATTCTGTGGTGAAGAACAACTTTGGCCAAACTAGTATGATTACGACAAAGAAGAAGGAGCATAAACAAGTTTGCATAACGGAAACCGAACAAGGTGAGATAATCCATGAAGGGGAAAGTAGTAGTAGTAGTAGTAGTGTAACGAATGATGAGATGTGGGAATCGTTGACATTGGCATCTCCACAATTGCATTGTATTAATGAAAGAGCAGAAGAGTTCATAGCTAAATTTCGTGCAGACATGCTGCGTCAAGAGAATATGTTG</gDNA_template>
            <first_frame> L  F  L  R  N  R  K  Q  N  G  H  K  S  A  E  K  K  R  I  L  *  T  T  *  F  L  S  S  F  C  T  K  L  *  R  K  I  *  A  S  E  F  I  L  L  H  Q  *  L  *  L  L  V  Y  Y  Y  *  Y  Y  L  Y  I  L  Y  L  S  L  L  L  Y  F  S  P  Y  S  *  L  N  L  H  C  F  K  F  N  H  H  V  L  L  K  L  A  *  S  T  P  S  N  S  K  N  V  E  V  F  F  H  Q  I  T  N  Q  F  P  Q  S  T  Q  *  I  Q  S  H  *  E  S  Q  E  S  K  S  F  M  H  Q  E  T  S  P  V  S  C  L  S  S  S  I  Q  N  *  T  F  K  Q  *  V  Q  I  Q  V  E  I  Q  T  Y  S  E  I  S  Q  E  I  S  T  S  I  Y  R  S  T  F  H  *  E  Y  I  *  F  C  G  E  E  Q  L  W  P  N  *  Y  D  Y  D  K  E  E  G  A  *  T  S  L  H  N  G  N  R  T  R  *  D  N  P  *  R  G  K  *  *  *  *  *  *  C  N  E  *  *  D  V  G  I  V  D  I  G  I  S  T  I  A  L  Y  *  *  K  S  R  R  V  H  S  *  I  S  C  R  H  A  A  S  R  E  Y  V  </first_frame>
            <second_frame>  C  F  *  E  I  E  N  K  M  D  I  S  L  L  K  R  N  A  F  F  K  L  P  N  F  C  P  L  F  A  L  N  Y  S  V  K  F  K  P  V  N  L  Y  Y  Y  T  N  D  Y  N  Y  *  S  T  T  T  S  T  I  Y  I  S  Y  I  S  A  F  C  Y  I  S  P  L  I  H  N  *  I  C  I  V  S  N  S  I  T  M  Y  C  L  N  L  R  R  V  L  L  P  T  Q  K  M  W  K  F  F  S  T  K  L  Q  I  N  F  H  K  V  L  N  R  S  K  V  I  K  K  A  K  N  P  N  P  L  C  I  K  K  L  A  P  S  L  V  F  R  V  Q  F  K  T  K  R  S  N  N  K  F  K  Y  K  S  K  F  R  P  T  L  K  F  H  K  K  S  A  P  V  Y  I  D  Q  L  F  I  E  N  I  S  D  S  V  V  K  N  N  F  G  Q  T  S  M  I  T  T  K  K  K  E  H  K  Q  V  C  I  T  E  T  E  Q  G  E  I  I  H  E  G  E  S  S  S  S  S  S  S  V  T  N  D  E  M  W  E  S  L  T  L  A  S  P  Q  L  H  C  I  N  E  R  A  E  E  F  I  A  K  F  R  A  D  M  L  R  Q  E  N  M  L </second_frame>
            <third_frame>   V  F  K  K  *  K  T  K  W  T  *  V  C  *  K  E  T  H  S  L  N  Y  L  I  F  V  L  F  L  H  *  T  I  A  *  N  L  S  Q  *  I  Y  I  I  T  P  M  T  I  T  T  S  L  L  L  L  V  L  F  I  Y  L  I  S  Q  P  F  V  I  F  L  P  L  F  I  T  E  F  A  L  F  Q  I  Q  S  P  C  I  A  *  T  C  V  E  Y  S  F  Q  L  K  K  C  G  S  F  F  P  P  N  Y  K  S  I  S  T  K  Y  S  I  D  P  K  S  L  R  K  P  R  I  Q  I  L  Y  A  S  R  N  *  P  R  L  L  S  F  E  F  N  S  K  L  N  V  Q  T  I  S  S  N  T  S  R  N  S  D  L  L  *  N  F  T  R  N  Q  H  Q  Y  I  *  I  N  F  S  L  R  I  Y  L  I  L  W  *  R  T  T  L  A  K  L  V  *  L  R  Q  R  R  R  S  I  N  K  F  A  *  R  K  P  N  K  V  R  *  S  M  K  G  K  V  V  V  V  V  V  V  *  R  M  M  R  C  G  N  R  *  H  W  H  L  H  N  C  I  V  L  M  K  E  Q  K  S  S  *  L  N  F  V  Q  T  C  C  V  K  R  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09SLm0140D21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="160398" stop="160991"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICIVSNSITMYCLNLRRVLLPTQKMWKFFSTKLQINFHKVLNRSKVIKKAKNPNPLCIKKLAPSLVFRVQFKTKRSNNKFKYKSKFRPTLKFHKKSAPVYIDQLFIENISDSVVKNNFGQTSMITTKKKEHKQVCITETEQGEIIHEGESSSSSSSVTNDEMWESLTLASPQLHCINERAEEFIAKFRADMLRQENML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 228 chains have been computed
$ 
$ memory statistics:
$ 452264 bytes spliced alignments in total
$ 209 spliced alignments have been stored
$ 2163 bytes was the average size of a spliced alignment
$ 11296 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 5648 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 240 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-29 14:47:03
-->
