<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-04-18 01:36:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E302795" ref_strand="+" ref_description="SGN-E302795 [cLEY-2-E7]">
      <seq>atttacacataacaatctgttcccacacacatttacaactcttaccttttggtccgcagttgatgtggttgctcctctactcgtactgttgtgaatcatgcagaaatcgttcgctcaaaatctcgtaaaactatcatcactaccactaattcttgttctcatcttctgttgtttggttatgatggtttcagctagaggtaactcttttgatactagtttagttgcaaagctatatttaaactccgtctatttcagtttgtttgtttgattttgacttggacgaggtttagagtagtaaaaagaatacttttaaatcttctgcatctttaactaaaagataagtaaaatgtatcaaatagagttgtcgtttagttttagatatcctttggtaattcatttgtaaagacattattcaggctctcatgtgactaatcctggtgttgagtctgatgacgatgctatgaagcaagacgaaacatcattgaggaaacgattagagccattgcatcgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="27977" stop="29089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28277" g_stop="28789" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-E302795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28277" e_stop="28789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACACATAACAATCTGTTCCCACACACATTTACAACTCTTACCTTTTGGTCCGCAGTTGATGTGGTTGCTCCTCTACTCGTACTGTTGTGAATCATGCAGAAATCGTTCGCTCAAAATCTCGTAAAACTATCATCACTACCACTAATTCTTGTTCTCATCTTCTGTTGTTTGGTTATGATGGTTTCAGCTAGAGGTAACTCTTTTGATACTAGTTTAGTTGCAAAGCTATATTTAAACTCCGTCTATTTCAGTTTGTTTGTTTGATTTTGACTTGGACGAGGTTTAGAGTAGTAAAAAGAATACTTTTAAATCTTCTGCATCTTTAACTAAAAGATAAGTAAAATGTATCAAATAGAGTTGTCGTTTAGTTTTAGATATCCTTTGGTAATTCATTTGTAAAGACATTATTCAGGCTCTCATGTGACTAATCCTGGTGTTGAGTCTGATGACGATGCTATGAAGCAAGACGAAACATCATTGAGGAAACGATTAGAGCCATTGCATCGCGA</genome_strand>
        <mrna_strand>ATTTACACATAACAATCTGTTCCCACACACATTTACAACTCTTACCTTTTGGTCCGCAGTTGATGTGGTTGCTCCTCTACTCGTACTGTTGTGAATCATGCAGAAATCGTTCGCTCAAAATCTCGTAAAACTATCATCACTACCACTAATTCTTGTTCTCATCTTCTGTTGTTTGGTTATGATGGTTTCAGCTAGAGGTAACTCTTTTGATACTAGTTTAGTTGCAAAGCTATATTTAAACTCCGTCTATTTCAGTTTGTTTGTTTGATTTTGACTTGGACGAGGTTTAGAGTAGTAAAAAGAATACTTTTAAATCTTCTGCATCTTTAACTAAAAGATAAGTAAAATGTATCAAATAGAGTTGTCGTTTAGTTTTAGATATCCTTTGGTAATTCATTTGTAAAGACATTATTCAGGCTCTCATGTGACTAATCCTGGTGTTGAGTCTGATGACGATGCTATGAAGCAAGACGAAACATCATTGAGGAAACGATTAGAGCCATTGCATCGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E346186" ref_strand="+" ref_description="SGN-E346186 [cTOF-23-C7]">
      <seq>taattattgatattataattatttgagtgaaaggtaaaataaccgggatacttcaggtgtgtttttgacctttcactctctcaattcttttgtttgatcattttacggatttctccttgtaacatttccggataacctaatattgatgacaggaggaagtctgggaagtagcagctgagctgctaggtctttctctcggcatactagctttggatacacctggtatctcaaagtcttatcctacattggcattaacatggttaagtgtgcggatcctacatctttggtttcgctatcagtctctttcagttctgcaattcaacacgataaatctcaaacgggctcgcatattagtgaactctcatgttttacactgtacagtcccaggaatcaatgaatgcaataggatggagagcatcttattgtgggaaagattcttaaggccacgaattatttttgagatatctttggaggagatgatcaatgcgggcaaatacagatccaagcaaatcaagaaactcattcatatgtacaaggaggaaaactattttcttgtagtaaatgaacagaaggcagcggattttcagggtctttgtatctttcaaggaaggagcctcaagcctatccgttttttcgagtatatggcaaacctattggctatatcaaaactgggggctggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="36834" stop="34752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36534" g_stop="36323" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36322" i_stop="36173" i_length="150">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36172" g_stop="36059" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="326" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36058" i_stop="35677" i_length="382">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35676" g_stop="35616" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="387" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35615" i_stop="35541" i_length="75">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.150" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35540" g_stop="35420" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="506" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35419" i_stop="35305" i_length="115">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35304" g_stop="35206" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="606" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35205" i_stop="35126" i_length="80">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35125" g_stop="35052" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="681" r_length="75" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E346186" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36534" e_stop="36323"/>
          <exon e_start="36172" e_stop="36059"/>
          <exon e_start="35676" e_stop="35616"/>
          <exon e_start="35540" e_stop="35420"/>
          <exon e_start="35304" e_stop="35206"/>
          <exon e_start="35125" e_stop="35052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTATTGATATTATAATTATTTGAGTGAAAGGTAAAATAACCGGGATACTTCAGGTGTGTTTTTGACCTTTCACTCTCTCAATTCTTTTGTTTGATCATTTTACGGATTTCTCCTTGTAACATTTCCGGATAACCTAATATTGATGACAGGAGGAAGTCTGGGAAGTAGCAGCTGAGCTGCTAGGTCTTTCTCTCGGCATACTAGCTTTGGTATGACATATATTTATTTATATGGTTTCAATCTACGTCTGTCACATCAAATGATAACTTTCTAAGGGTCCTCGACCAATATAATTAATCCTCATCTTTTCCATAATAACATATGTATATCTTACTTTTTCTTCTGAAAATATACCGCAGGATACACCTGGTATCTCAAAGTCTTATCCTACATTGGCATTAACATGGTTAAGTGTGCGGATCCTACATCTTTGGTTTCGCTATCAGTCTCTTTCAGTTCTGCAATTCAACACGGTGAGACTTTATTCTTAGTTATCAGTATATACCGAATAGCCATTTTGACTTGCCACAAAATGTTTTTGGCACTACTATCAAGTAATATTTAAAATTCTTGAACACTTTGCCTTCTCTTCATCATCTTTTTTTTTTCTCGACCCTGGTCCCTGAGCATAAGTTAATAGCAAGAGATAAATCATCTATCTAATAGACCAGAACAGGGGTCCCCATTGTCTGATATATTGGTTCTCTCAGATTTGTGAAAGTTTTTCCTTCTTCAGATATAGGAAACAGCTAAGCGAGGACAAAAAACGATAACGAAACAAGGATTTTGAATTAAGCAACAATCTTCTGAATTTTCCTTGGCTTGTTGAATTCTGGTTACTGTGCTTTTGTGCAGATAAATCTCAAACGGGCTCGCATATTAGTGAACTCTCATGTTTTACACTGTACAGTCCCAGGTAAAATCAGTCTTGCTTTCTCTGAAATCTTCAACTCTATAGGGTAAGTCAGGCCTGTTACTCCATGTGGACCAGGAATCAATGAATGCAATAGGATGGAGAGCATCTTATTGTGGGAAAGATTCTTAAGGCCACGAATTATTTTTGAGATATCTTTGGAGGAGATGATCAATGCGGGCAAATACAGATCCAAGGTGTAGCCTTCTTTGTCCCAAACGAAATCAGAGAACTTTTGGATTCGTACAACGATTTAAAGAAATCATAATTGTGACTGTATTCTTGAAAGGTGATGTTTGATTCATTCTTTGCAGCAAATCAAGAAACTCATTCATATGTACAAGGAGGAAAACTATTTTCTTGTAGTAAATGAACAGAAGGCAGCGGATTTTCA-GGTCTTTGTATCTTTCAAGGTATGCACTAATTATAATCTAGTTAAGACAGAACTCTCACTTCACTGGCAATGCTTACGTCTCTTCTCACTTCCCCGCAGGAAGGAGCCTCAAGCCTATCCGTTTTTCGAAGTATATGGCAAACCTATTGGCTATATCAAAACT-GGGGCTGGTC</genome_strand>
        <mrna_strand>TAATTATTGATATTATAATTATTTGAGTGAAAGGTAAAATAACCGGGATACTTCAGGTGTGTTTTTGACCTTTCACTCTCTCAATTCTTTTGTTTGATCATTTTACGGATTTCTCCTTGTAACATTTCCGGATAACCTAATATTGATGACAGGAGGAAGTCTGGGAAGTAGCAGCTGAGCTGCTAGGTCTTTCTCTCGGCATACTAGCTTTG......................................................................................................................................................GATACACCTGGTATCTCAAAGTCTTATCCTACATTGGCATTAACATGGTTAAGTGTGCGGATCCTACATCTTTGGTTTCGCTATCAGTCTCTTTCAGTTCTGCAATTCAACACG..............................................................................................................................................................................................................................................................................................................................................................................................ATAAATCTCAAACGGGCTCGCATATTAGTGAACTCTCATGTTTTACACTGTACAGTCCCAG...........................................................................GAATCAATGAATGCAATAGGATGGAGAGCATCTTATTGTGGGAAAGATTCTTAAGGCCACGAATTATTTTTGAGATATCTTTGGAGGAGATGATCAATGCGGGCAAATACAGATCCAA-G-...................................................................................................................CAAATCAAGAAACTCATTCATATGTACAAGGAGGAAAACTATTTTCTTGTAGTAAATGAACAGAAGGCAGCGGATTTTCAGGGTCTTTGTATCTTTCAAG................................................................................GAAGGAGCCTCAAGCCTATCCGTTTTTTCGAGTATATGGCAAACCTATTGGCTATATCAAAACTGGGGGCTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E560157" ref_strand="+" ref_description="SGN-E560157 [19766]">
      <seq>aaaaaactcanagaatggcaatggcgttttctctgcaattcaacaaccccatctcaactttttcatgttctaacctttataatgggactagaactcaaccctttaaattcttgtgtacttcttctccacaatctgattcttccaatagcaaagaagaagctattcaagactcatctggggaaaatgataaagggtatgtgattctggtggagaagtacaggaatggaactttgaaaagatacagtttcagatgattacttggactacatgttgcttcagttcccaaccaatgtaactggatggatctgtcacacgctggtgacttcaagtctcttaaaggcagttggagtgggctctttttccggaacttccgcagctgcttcagctgctgcttctgctgctgccatcagatgggtttcaaaggatggaattggtgcccttggacgctttttcattggtgggcggtttggcaatctttttgatgatgatcctaaacaatggcgcatgtatgcagatttcattggcagtgcaggaagtatatttgatctctgtacccctatctatccatcttatttcctacccttagcatctcttggaaatcttgccaaggctgtagcaagggggctaaaggacccttcgttccgggttatacaaaaccactttgctatcgctggaaatttgggagacgtagcagcaaaggaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="39977" stop="36815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39678" g_stop="39501" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39500" i_stop="39364" i_length="137">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39363" g_stop="39304" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="238" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39303" i_stop="38362" i_length="942">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38361" g_stop="38261" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="339" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38260" i_stop="37944" i_length="317">
            <donor d_prob="0.733" d_score="1.00"/>
            <acceptor a_prob="0.215" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37943" g_stop="37885" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="397" r_length="58" r_score="0.932"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37884" i_stop="37718" i_length="167">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="37717" g_stop="37656" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="457" r_length="60" r_score="0.887"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="37655" i_stop="37574" i_length="82">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="37573" g_stop="37495" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="536" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="37494" i_stop="37414" i_length="81">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.722" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="37413" g_stop="37341" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="609" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="37340" i_stop="37206" i_length="135">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37205" g_stop="37116" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="699" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E560157" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39678" e_stop="39501"/>
          <exon e_start="39363" e_stop="39304"/>
          <exon e_start="38361" e_stop="38261"/>
          <exon e_start="37943" e_stop="37885"/>
          <exon e_start="37717" e_stop="37656"/>
          <exon e_start="37573" e_stop="37495"/>
          <exon e_start="37413" e_stop="37341"/>
          <exon e_start="37205" e_stop="37116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTCAAAGAGTGGCAATGGCGTTTCCTCTGCAATTCAACAACCCCATCTCAACTTTTTCATGTTCCAACCTTTATAATGGTAATAGAACTCAACCCTTTAAATTCTTGTGTACTTCTTCTCCACAATCTGATTCTTCCAATAGCAAAGAAGAAGCTATTCAAGACTCATCTTGGTATATGTAAATTTTATTCTTTTGATTTTCTTTCAAACTCAGAATTGGTAATAAAGCTCCAAGCTTGAATGGGTTTGGGGGTTTGTTGATAATGGTGCATATTTGTAGACTAATCATCTCTATCTTCTTAATTAAAGGGAAAATGATAAAGGGTATGTGGTTCTGGTGGAGAAGTACAGGAATGGAACTTTGAAAAGGTATATCTTTTAACTCTTTTTTCGACATTTTGCTTCATTAGTTAAGATTACTGATTGAATGCTACCTATTAAACAAATGTGCTGATTGAATGATGGTCGAATGTGGAGATTACTTGGGACAGTTTAAAGTGAAATAGGATCTCGTGGAGTATTGGTGTGTAGTTAGGAATTGGTTGATAGGATATGGGGGCCATTTGGCTTTTTGCTCAAGATTATTTCCTGATGTTACTAGTGTTGATTCTACTGATAGCGGGTGTAGTTGTGGTTGCTTAAATAATTCCTTGCTGCTTTTGTTGTTTGAGTATGTAATCAAGAATGAATAGTCAGAGGTGGATCCACGATGTAAACATGATGAGTTCGACCTTAAGGTTTTTAGCTCTGAACTCACTGCACCATTAGAAATTATGATTATTGTCTCATAAAACTAATATCTATTAAAACTTTAGTAGTTTCACATATATGCCTACACTCTTGTGTCAAAAACAAAAAATTTCAGCCGGTAGTTGGAACACTACATCCGCCTATGTGAATAGCACTTCATCTTTGCAAAGTGACATGAATACTTATTGGTCTCTCAACTGTTTGACCATGTTAGTATTGATTTCTATGGATAGGTATGTTATAGACAATGACTCTGAAATGAAAATGTTTCTTGAGGAGCATGTACCCACAACTAGTAGATCCCAAGATCTTGATATCTCTGGCATGGAGTTATCTTGGCTCCCTAAGGTTATCAAGGATTTTGTGTTACCATCTGGTTTCCCAGGTAACAAACATCATATTGTTTGTTTCCATTTTCTTCTTCTCTTTCTTATTTCCTTTTTCACTATATTTCTAGTTTTTGTATTCCTACATGCTAAGCGCCTGTTTGACCATTTATATTTTTTGTTATGAAGGGGACATAGGTGTTCTTTAGATGTCTTATATGAACTATCGTTGCAGATACAGTTTCAGATGATTATTTGGACTACATGTTGCTTCAGTTCCCAACCAATGTAACTGGATGGATCTGTCACACGCTGGTGACTTCAAGTCTCTTAAAGGCATGTCAATCTTATTCAGGCCGTTAGTTCCACTTGGGTATGTTAAAGTGCTTGTAAAACCTGCAACTGCTTGCCAGGATTGTGACCTTCTAAATGGAAATCATTGACAAACTACTGAAACAGAGTCTTATATAGTTTTACTTAATTAACTTACAAATCGTTCGGTCTCATGTATATTTGTGAATCATGTTATTACACTCTGTCCAAGTTATATTGGGCTTAGGAGTTGCTAACATATTTTATGATAGTTGGATCCATGCCCACATGCTTTCAGTTTGATTCGGACTCATCCTGTACTGATTGATATTAACATCCAGGCGGTTGGAGTGGGCTCTTTTTCCGGAACTTCCGCAGCTGCTTCAGCTGCTGCCATCAGGTACTGTTCATTTTCATCAGCTTTTTATCTCACGCAGTGTGGCCTTGACTTTAAGGAATTCAATATTTGTCTCATATGTTATTATAATTCATGCTGATTGCTACTCGAAAACTTGGATAGCATTGTGCTTTTAAGTTCATAGCATGCACTATAGTTTAGTGGCTGTCCTATTGTTTTTGCAGATGGGTTTCAAAGGATGGAATTGGTGCCCTTGGACGCTTTTTCATTGGTCTGGTAGTTTAAAATAAGTATAAGAACAGAGTTAAGGACCTATCTGATTAAAATTGTTAGTAAAGGCTGATGTCTTCCAGGTGGACGGTTTGGCAATCTTTTTGATGATGATCCCAAACAATGGCGCATGTATGCAGATTTCATTGGTAGTGCAGGAAGGTATCACAAATATTTGTCTTTCTTGGGTACATCAAAGTTTATTGGTTTTAGTGAACTGATGACGTTGATTTCTTTTTGCAGTATATTTGATCTCTGTACCCCTCTCTATCCATCTTATTTCCTACCTTTAGCTTCTCTTGGAAATCTTGCCAAGGTATTTAGCTAATAAAATATATAGTTAGTCTTCATGCATCCCTAGGAAATGATTCCATAAGCAATACACTTTGTGTAGAAGTTCTCTATGAATCTGATGTATATCCTAAGTCAATTTTTGGTATTTTTTAAGTAGGCTGTAGCAAGGGGGCTAAAGGACCCTTCATTCCGGGTTATACAAAACCACTTTGCTATCGCTGGAAATTTGGGAGACGTAGCAGCAAAG</genome_strand>
        <mrna_strand>AAAAAACTCANAGAATGGCAATGGCGTTTTCTCTGCAATTCAACAACCCCATCTCAACTTTTTCATGTTCTAACCTTTATAATGGGACTAGAACTCAACCCTTTAAATTCTTGTGTACTTCTTCTCCACAATCTGATTCTTCCAATAGCAAAGAAGAAGCTATTCAAGACTCATCTGG.........................................................................................................................................GGAAAATGATAAAGGGTATGTGATTCTGGTGGAGAAGTACAGGAATGGAACTTTGAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTTTCAGATGATTACTTGGACTACATGTTGCTTCAGTTCCCAACCAATGTAACTGGATGGATCTGTCACACGCTGGTGACTTCAAGTCTCTTAAAG.............................................................................................................................................................................................................................................................................................................................GCAGTTGGAGTGGGCTCTTTTTCCGGAACTTCCGCAGCTGCTTCAGCTGCTG-CTTCTG.......................................................................................................................................................................CTGCTG-CCAT-CAGATGGGTTTCAAAGGATGGAATTGGTGCCCTTGGACGCTTTTTCATTG..................................................................................GTGGGCGGTTTGGCAATCTTTTTGATGATGATCCTAAACAATGGCGCATGTATGCAGATTTCATTGGCAGTGCAGGAAG.................................................................................TATATTTGATCTCTGTACCCCTATCTATCCATCTTATTTCCTACCCTTAGCATCTCTTGGAAATCTTGCCAAG.......................................................................................................................................GCTGTAGCAAGGGGGCTAAAGGACCCTTCGTTCCGGGTTATACAAAACCACTTTGCTATCGCTGGAAATTTGGGAGACGTAGCAGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E430745" ref_strand="+" ref_description="SGN-E430745 [STM-54-C2]">
      <seq>tacttttgtaacctacccactcgatgttctcaggttgagatttttagtacaccctgggtataaaacgatgagtgaggttgctttaaacatgctaaaagaggaaggctttgcatccttttataatggtctcgggccctcgctcattggaatagctccatatattgctgtgaatttttgtgtttttgacttggtgaaaaaagctttgccagaaaagtatcagaaacgaactgaagccactctggctacaggtttgatttcagcaactattgccactctattgtgctatccattggacacagtgagaagacaaatgcaaatgaagggtacaccttatatgacaatttttgatgccttcccaggtatagtggcacgtgatggtatagttggattgtacaggggttttgttcccaatgcactgaaaactctccctaatagcagcattaggcttactacttttgacactgtgaagcgtttgctagcaagaagtgaggaagagttccagaaaatcatggaggaaaaccgcaggcaaaaggcagaataattcctaactactgcaccaagtagatctgattcgatggagataattgatttcgtcattttgaagcattggttcgacgagcaagaaacttagctgccagtactatagtatattacctagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="45635" stop="42635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45401" g_stop="45395" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="45336" i_length="59">
            <donor d_prob="0.341" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45335" g_stop="45267" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="76" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45266" i_stop="45198" i_length="69">
            <donor d_prob="0.820" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45197" g_stop="45085" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="189" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45084" i_stop="44989" i_length="96">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44988" g_stop="44819" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="359" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44818" i_stop="43432" i_length="1387">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43431" g_stop="43353" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="438" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43352" i_stop="43129" i_length="224">
            <donor d_prob="0.846" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43128" g_stop="42942" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="637" r_length="199" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E430745" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45401" e_stop="45395"/>
          <exon e_start="45335" e_stop="45267"/>
          <exon e_start="45197" e_stop="45085"/>
          <exon e_start="44988" e_stop="44819"/>
          <exon e_start="43431" e_stop="43353"/>
          <exon e_start="43128" e_stop="42942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTGTTATTTACTCTCTTTTTCATCTGTCTTCAAGACGGTTAACTTGTTTATTTTATGTCAGGTAACCTACCCACTCGATGTTCTCAGGTTGAGATTAGCAGTAGACCCTGGATATAAAACAATGAGTGAGGTAAGAATCGGATAACTCAGAATTTGTGACGCCAGGACATATCTGAATCTTTATGTCAATTATTTACAGGTTGCTTTAAACATGCTGAAAGAGGAAGGCTTTGCATCCTTTTATAATGGTCTCGGGCCCTCGCTCATTGGAATAGCTCCATATATTGCTGTGAACTTTTGTGTTTTTGACTTGTGAGCCTATGGTCTTTTAAAGATCCTTTTTCTATATCATCTGAAGACAGAGTCCTGGTGTTACTGTAACCTAAATGATACTTCTCTGAATGTCAGGGTGAAAAAAGCTTTGCCAGAAGAGTATCAGAAACGAACTGAAGCCACTCTGGCTACAGGTTTGATTTCAGCAACTATTGCCACTCTATTGTGCTATCCATTGGACACAGTGAGAAGGCAAATGCAAATGAAGGGTACACCTTATATGACAATTTTTGATGCCTTCCCAGGTAAAGAATTCTAAAAGATCGTCAATATTTGTATATCTTTTTGTAACTAGATATGGAATTTGTCAAACTGTGTTTGTCTTCCTTTCACTGATGAGTCCACAGAAGCAGTGACAAATAATCAACTTAATCTGCAAATTTCATATTATCGACTGAAGAACTTCTTAGTTTAAGGTGTTTAAAACTATAGGAATTGCACTTTCTAAAGAAGAATCCAAAAAACTGAATGTAAATGTAATAAACAAATGCTAATATGTTAGACTCAGTAAACAGATTATCTAAAGGCAGGATTGTTTTTGTTCCATCTTTCTATACTTAGTTCTTTTAACCTAAACCATATTTTTGTCTTGCTTGGTTGGTTCACATGTCCGGTGATCAACGTTTTGCATGATCCTGATTCACAAGTCCTGCTGTCCAAGTTCTTCCTAGTTTACTATAGGGGGGAGGGGAGGGGGGGTCCTTGGCTTTCGGCCTAAAGTGTAGTGTCTACCTTTGGGTGCACTGTTGTAGCCATAGATACACTGTGGTACTAGCTTCACAATGCCCATACCCCAGCCTTGCTTTAAAGGGATGCATTAATATGCTCCTTAGCCCCCTTTTTTTGTTTGGATTGCTTCCTCATAGTTTGCCCCAAAATATGGTTCGTTTCTTAGATGGTAAGGTCCACCTATTTCAGAATCAAATTATATATTATTTGTTTTTAACTAACATCTTCACACCTATCACATCATCCAATAATGCTGACAAATATCTACCAAAGTTAGATATAACAGATCAGTTTTCTCTTAAGCTCTACTCAACATAGGTCATAATAAATGGGATGAGCGAGAAAAATGAAATAGCTTTATGTATGAGCAGCTTTAACAAAACAATTTTCCACTTTCTGATGTATCTGTGCTTCAAATCCTCAAGGGTAAAGTATCAAGGAGCATAAATTGTCAAAAATTTGATGACATTTTGATTTCAAGATGTAAATTCTTCAAACTTGTTAACTTTAAACTTCATTTTTTTGGGGAAAAACGAACATTTAACATTCAGTGACAGATTGATTGTATTGTGCTTTTTGAAGTCCATGTTTAACAAGCTTGAGAGGGGATTGCCTCCAGGGTTTGGTATACTGGTAAGAGTGTAACATGTTATGTGTGAATAGGCAGCTCGTCACAGGTTCGAATCCTGTGGCAAACAAAAACCTGGTATTTAAGTGGAGAATGGTGGAGGGGCGGACCCATTATCGGTCATGTTTGGAACCGTGTGCAACTGACCCTCAGGGATTAATTAGTTATCAAAATAGAAAAAATAACTTGAGAGGGGATCTGAGTTACTCTGAACTGAGAAAAATGTTCAACCTAATACACTTTCTAATTGATTATGTCACCCTTTTCTATTGCAGGTATAGTGGCCCGTGATGGTATAGTTGGACTCTACAGGGGTTTTGTTCCCAATGCACTGAAAACTCTCCCTAATAGCAGGTGCAGTTTTCTCATTGCTATTGCCTTTTTAGGGGTCTCTCTTCACTTGGACTATCATATCTGTGTTGCAAAATAAAAAACGATATGACTTTCTTTCTTCTCGTTGTTCTCCAAAGGGAACCATAAAAGGGATTACTATTGTTACCATGTACAGTGATCATTGCTAATATTTAACATTCTTGCCTAACATATGATTCTTTGTTTGTCTTCATTTTCTGGTACAGCATTAGGCTTACTACTTTTGACACCGTGAAGCGTTTGCTAGCAAGAAGTGAGGAAGAGTTCCAGAAAATTATAGAGGAAAACCGCAGGCAAAAGGCAG---AA----TAA-T--T-C-CCAAGTAGATCTGATTCCATGGAGATAATTGATCTCGTCATTTTGAAGCATTGGTTCGACGAGCAAGAAACTTAGCTTCCA</genome_strand>
        <mrna_strand>TACTTTT...........................................................GTAACCTACCCACTCGATGTTCTCAGGTTGAGATTTTTAGTACACCCTGGGTATAAAACGATGAGTGAG.....................................................................GTTGCTTTAAACATGCTAAAAGAGGAAGGCTTTGCATCCTTTTATAATGGTCTCGGGCCCTCGCTCATTGGAATAGCTCCATATATTGCTGTGAATTTTTGTGTTTTTGACTT................................................................................................GGTGAAAAAAGCTTTGCCAGAAAAGTATCAGAAACGAACTGAAGCCACTCTGGCTACAGGTTTGATTTCAGCAACTATTGCCACTCTATTGTGCTATCCATTGGACACAGTGAGAAGACAAATGCAAATGAAGGGTACACCTTATATGACAATTTTTGATGCCTTCCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATAGTGGCACGTGATGGTATAGTTGGATTGTACAGGGGTTTTGTTCCCAATGCACTGAAAACTCTCCCTAATAGCAG................................................................................................................................................................................................................................CATTAGGCTTACTACTTTTGACACTGTGAAGCGTTTGCTAGCAAGAAGTGAGGAAGAGTTCCAGAAAATCATGGAGGAAAACCGCAGGCAAAAGGCAGAATAATTCCTAACTACTGCACCAAGTAGATCTGATTCGATGGAGATAATTGATTTCGTCATTTTGAAGCATTGGTTCGACGAGCAAGAAACTTAGCTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E320267" ref_strand="+" ref_description="SGN-E320267 [cTOB-21-H21]">
      <seq>gaagaaccgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttcatcctacaacaactcagcttttaaagcaccctttggctatggttgctttgattcccagagaagctgcattgtttgctgcacgtgctattgctggtgccgctgcaaaatctgttactgcacctcttgaccgtatcaagctcctcatgcagacacatggactaagagctgggcaagaagctgncaagaaaggaatcggattcattgaggcatttgcattgattgngaaggaggaangtatcgaaggatattggaaaggaaaccttccgcaggtgatacggatcataccttatagtgcggtgcagttatttgcttatgaaacgtacaagaaactttttcaggaaaggatggcgagctttctgtcattggaagactagcagcacgtgcttgtgctggcatgacttctacttttgctacctacccactcgatgttctcagggtgagattagcagtagaccctggatataaacaatgagtgaggttgctttaacatgctgaaagagcaagctttgcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49044" stop="44965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48744" g_stop="48402" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46831" g_stop="46775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="400" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46044" g_stop="45982" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="463" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96">
            <donor d_prob="0.964" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45885" g_stop="45829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="520" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45828" i_stop="45745" i_length="84">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45744" g_stop="45661" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="603" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45660" i_stop="45336" i_length="325">
            <donor d_prob="0.966" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45335" g_stop="45267" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="671" r_length="68" r_score="0.942"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45266" i_stop="45198" i_length="69">
            <donor d_prob="0.820" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45197" g_stop="45159" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="708" r_length="37" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E320267" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48744" e_stop="48402"/>
          <exon e_start="46831" e_stop="46775"/>
          <exon e_start="46044" e_stop="45982"/>
          <exon e_start="45885" e_stop="45829"/>
          <exon e_start="45744" e_stop="45661"/>
          <exon e_start="45335" e_stop="45267"/>
          <exon e_start="45197" e_stop="45159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAGGTATGTATTGCTGTGTTGCTTGTTGTTACTTTCTGAGATATACAACATAGACAAGCTATGTTATTGAGTTCCCAGAAGTCTGGTGTTTCCTATTCTCTGTAGTTTATATTGTACAGAGTTTTAGCTATGATGATTGATCCGAAAGACTAAAGGAGTGATCTGCTGTATCATAGTTAGGAACTATTTTACTGGGAAAGACGAAGGCTCTCCCTTACAGTCTTCACTTGAGGGTAGAATTCCAGTCAACTTGTCAGTCAGCATTCATAACTGACTTCTACCACCGACTAAAAAAATGTAGAATTTGGTATATGCCTCATTTTCCGTCTGTAGAAAGTTTTTTTTTTTTGGATGATAGACAGTATGATGAATATAGAAATCTAATAGTAGAAGACTTTCTGCCTATTTATTTTATTTTATTACTTCTTTTTACTTGGTTATAAACCTTTGAATCTCTCTGTAATGTTATATGTTGTGAAGCAATTGAGTCCCTCAGCGGTTAAAAAGTTTAAAAGACTACATTGAGTTTCTAAGGGTCCTAGTAATGGGTTTATCAGCTAAATGGGCTCTCCTTTTGGGTTATCCTAGTTAGTATATAGCCATTATGGTATTTTTTCTTCTATATGTCTTTTGTGCAAACCTCCCATAGGGTGATAATTCCCACTCATAGACGCCATCATTGGGTCATATGATTCTCAAGTTTTTGATATATGCCTGAAATTGGATTGTGCAGGCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAGGTATTTGCACCATTTTCCCAGAGTCACATTTCTAGTGGATTCTTGGTGATTGCTTTTTTAAGACATCAAGTTGATTATTTTCTTTTAATGGTTTAGGTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAGGTAATGAAACATCTTTGGAGAAAACTTTAACACTGGTTTGATTGTTTGGCTAGAATGAAGTTGATTTGACACTTCTATTTACAGAAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAGGTGCTTGTGCTGGCATGACTTCTACTTTTGTAAGTTTGCATTATGGGAACACCATATAGTTTTTCTAAATTGTCCATTTGGCATATAATTTTTGCAATTATGTTTGCACAAGTGAAATAGACCTGGCAGAAACTTAGTGCTTATTGTCATCACAGTAATATTACTGATCTGAGCACTGTTGTTTGCTTTATAAGATTTATTCGAAACCTTCCATTTGATCTCCCTTCCCCTGCAGGGATGAGAATGAGGGGCCATCAGTATCTCAATTATTCATTTGCCTGCTCTTCTTTGTGTTGTTATTTACTCTCTTTTTCATCTGTCTTCAAGACGGTTAACTTGTTTATTTTATGTCAGGTAACCTACCCACTCGATGTTCTCAGGTTGAGATTAGCAGTAGACCCTGGATATAAAACAATGAGTGAGGTAAGAATCGGATAACTCAGAATTTGTGACGCCAGGACATATCTGAATCTTTATGTCAATTATTTACAGGTTGCTTTAAACATGCTGAAAGAGGAAGGCTTTGCATCC</genome_strand>
        <mrna_strand>GAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCACGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGGACTAAGAGCTGGGCAAGAAGCTGNCAAGAAAGGAATCGGATTCATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGCATTGATTGNGAAGGAGGAANGTATCGAAGGATATTGGAAAGGAAACCTTCCGCAG................................................................................................GTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAG....................................................................................AAACTTTTTC-AGGAAAGGATGGCGAGCTTTCTGTCATTGGAAGACTAGCAGCACGTGCTTGTGCTGGCATGACTTCTACTTTT.....................................................................................................................................................................................................................................................................................................................................GCTACCTACCCACTCGATGTTCTCAGGGTGAGATTAGCAGTAGACCCTGGATAT-AAACAATGAGTGAG.....................................................................GTTGCTTT-AACATGCTGAAAGAGCAA-GCTTTGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E342793" ref_strand="+" ref_description="SGN-E342793 [cTOF-7-D11]">
      <seq>aagaaccgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttcatcctacaacaactcagcttttaaagcaccctttggctatggttgctttgattcccagagaagctgcattgtttgctgcaggtgctattgctggtgccgctgcaaaatctgttactgcacctcttgaccgtatcaagctcctcatgcagacacatggactaagagctgggcaagaagctgcaaagaaaggaatcggattcattgaggcatttgcattgattgggaaggaggaaggtatcaaaggatattggaaaggaaaccttccacaggtgatacggatcataccttatagtgcggtgcagttatttgcttatgaaacgtacaagaaactttttcaaggaaaggatggggagctttctgtcattggaagactagcagcaggtgcttgtgctggcatgacttctacttttgtaacctacccactcgatgttctcaggttgagattagcagtagaccctggatataaacaatgagtgaggttgctttaacatgctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49043" stop="44965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48743" g_stop="48402" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46831" g_stop="46775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="399" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46044" g_stop="45982" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="462" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45885" g_stop="45829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="519" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45828" i_stop="45745" i_length="84">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45744" g_stop="45661" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="603" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45660" i_stop="45336" i_length="325">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45335" g_stop="45267" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="671" r_length="68" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45266" i_stop="45198" i_length="69">
            <donor d_prob="0.820" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45197" g_stop="45178" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="690" r_length="19" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E342793" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48743" e_stop="48402"/>
          <exon e_start="46831" e_stop="46775"/>
          <exon e_start="46044" e_stop="45982"/>
          <exon e_start="45885" e_stop="45829"/>
          <exon e_start="45744" e_stop="45661"/>
          <exon e_start="45335" e_stop="45267"/>
          <exon e_start="45197" e_stop="45178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAGGTATGTATTGCTGTGTTGCTTGTTGTTACTTTCTGAGATATACAACATAGACAAGCTATGTTATTGAGTTCCCAGAAGTCTGGTGTTTCCTATTCTCTGTAGTTTATATTGTACAGAGTTTTAGCTATGATGATTGATCCGAAAGACTAAAGGAGTGATCTGCTGTATCATAGTTAGGAACTATTTTACTGGGAAAGACGAAGGCTCTCCCTTACAGTCTTCACTTGAGGGTAGAATTCCAGTCAACTTGTCAGTCAGCATTCATAACTGACTTCTACCACCGACTAAAAAAATGTAGAATTTGGTATATGCCTCATTTTCCGTCTGTAGAAAGTTTTTTTTTTTTGGATGATAGACAGTATGATGAATATAGAAATCTAATAGTAGAAGACTTTCTGCCTATTTATTTTATTTTATTACTTCTTTTTACTTGGTTATAAACCTTTGAATCTCTCTGTAATGTTATATGTTGTGAAGCAATTGAGTCCCTCAGCGGTTAAAAAGTTTAAAAGACTACATTGAGTTTCTAAGGGTCCTAGTAATGGGTTTATCAGCTAAATGGGCTCTCCTTTTGGGTTATCCTAGTTAGTATATAGCCATTATGGTATTTTTTCTTCTATATGTCTTTTGTGCAAACCTCCCATAGGGTGATAATTCCCACTCATAGACGCCATCATTGGGTCATATGATTCTCAAGTTTTTGATATATGCCTGAAATTGGATTGTGCAGGCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAGGTATTTGCACCATTTTCCCAGAGTCACATTTCTAGTGGATTCTTGGTGATTGCTTTTTTAAGACATCAAGTTGATTATTTTCTTTTAATGGTTTAGGTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAGGTAATGAAACATCTTTGGAGAAAACTTTAACACTGGTTTGATTGTTTGGCTAGAATGAAGTTGATTTGACACTTCTATTTACAGAAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAGGTGCTTGTGCTGGCATGACTTCTACTTTTGTAAGTTTGCATTATGGGAACACCATATAGTTTTTCTAAATTGTCCATTTGGCATATAATTTTTGCAATTATGTTTGCACAAGTGAAATAGACCTGGCAGAAACTTAGTGCTTATTGTCATCACAGTAATATTACTGATCTGAGCACTGTTGTTTGCTTTATAAGATTTATTCGAAACCTTCCATTTGATCTCCCTTCCCCTGCAGGGATGAGAATGAGGGGCCATCAGTATCTCAATTATTCATTTGCCTGCTCTTCTTTGTGTTGTTATTTACTCTCTTTTTCATCTGTCTTCAAGACGGTTAACTTGTTTATTTTATGTCAGGTAACCTACCCACTCGATGTTCTCAGGTTGAGATTAGCAGTAGACCCTGGATATAAAACAATGAGTGAGGTAAGAATCGGATAACTCAGAATTTGTGACGCCAGGACATATCTGAATCTTTATGTCAATTATTTACAGGTTGCTTTAAACATGCTGAA</genome_strand>
        <mrna_strand>AAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAG................................................................................................GTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAG....................................................................................AAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAGGTGCTTGTGCTGGCATGACTTCTACTTTT.....................................................................................................................................................................................................................................................................................................................................GTAACCTACCCACTCGATGTTCTCAGGTTGAGATTAGCAGTAGACCCTGGATAT-AAACAATGAGTGAG.....................................................................GTTGCTTT-AACATGCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E477504" ref_strand="+" ref_description="SGN-E477504 [cSTB-48-K8]">
      <seq>cttcacaacagaggaagaaaaagcttcattcctctgtatccaccatgaggaagaaccgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgccagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttaatcctacaacaactcagctcttaaagcaccctttggctatggttgctttggttcctagagaagctgcattgtttgctgcaggtgctattgctggtgccgctgcaaagaaaggaatcggattcattgaggcatttgcattgattgggaaggaggaaggtatcaaaggatattggaaaggaaaccttccacaggtgatacggatcataccttatagtgcggtgcagttatttgcttatgaaacgtacaagaaactttttcaaggaaaggatggggagctttctgtcattggaagactagcagcangtgcttgtgctggcatgacttctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49092" stop="45362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48793" g_stop="48450" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48449" i_stop="46802" i_length="1648">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46801" g_stop="46775" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="371" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46044" g_stop="45982" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="434" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45885" g_stop="45829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="491" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45828" i_stop="45745" i_length="84">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45744" g_stop="45662" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="574" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E477504" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48793" e_stop="48450"/>
          <exon e_start="46801" e_stop="46775"/>
          <exon e_start="46044" e_stop="45982"/>
          <exon e_start="45885" e_stop="45829"/>
          <exon e_start="45744" e_stop="45662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACAACAGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAGGTATGTATTGCTGTGTTGCTTGTTGTTACTTTCTGAGATATACAACATAGACAAGCTATGTTATTGAGTTCCCAGAAGTCTGGTGTTTCCTATTCTCTGTAGTTTATATTGTACAGAGTTTTAGCTATGATGATTGATCCGAAAGACTAAAGGAGTGATCTGCTGTATCATAGTTAGGAACTATTTTACTGGGAAAGACGAAGGCTCTCCCTTACAGTCTTCACTTGAGGGTAGAATTCCAGTCAACTTGTCAGTCAGCATTCATAACTGACTTCTACCACCGACTAAAAAAATGTAGAATTTGGTATATGCCTCATTTTCCGTCTGTAGAAAGTTTTTTTTTTTTGGATGATAGACAGTATGATGAATATAGAAATCTAATAGTAGAAGACTTTCTGCCTATTTATTTTATTTTATTACTTCTTTTTACTTGGTTATAAACCTTTGAATCTCTCTGTAATGTTATATGTTGTGAAGCAATTGAGTCCCTCAGCGGTTAAAAAGTTTAAAAGACTACATTGAGTTTCTAAGGGTCCTAGTAATGGGTTTATCAGCTAAATGGGCTCTCCTTTTGGGTTATCCTAGTTAGTATATAGCCATTATGGTATTTTTTCTTCTATATGTCTTTTGTGCAAACCTCCCATAGGGTGATAATTCCCACTCATAGACGCCATCATTGGGTCATATGATTCTCAAGTTTTTGATATATGCCTGAAATTGGATTGTGCAGGCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAGGTATTTGCACCATTTTCCCAGAGTCACATTTCTAGTGGATTCTTGGTGATTGCTTTTTTAAGACATCAAGTTGATTATTTTCTTTTAATGGTTTAGGTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAGGTAATGAAACATCTTTGGAGAAAACTTTAACACTGGTTTGATTGTTTGGCTAGAATGAAGTTGATTTGACACTTCTATTTACAGAAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAGGTGCTTGTGCTGGCATGACTTCTACTTT</genome_strand>
        <mrna_strand>CTTCACAACAGAGGAAGAAAAAGCTTCATTCCTCTGTATCCACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCCAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTAATCCTACAACAACTCAGCTCTTAAAGCACCCTTTGGCTATGGTTGCTTTGGTTCCTAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGAAAGGAATCGGATTCATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAG................................................................................................GTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAG....................................................................................AAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCANGTGCTTGTGCTGGCATGACTTCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E269944" ref_strand="+" ref_description="SGN-E269944 [cLEM-7-O13]">
      <seq>ccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttcatcctacaacaactcagcttttaaagcaccctttggctatggttgctttgattcccagagaagctgcattgtttgctgcaggtgctattgctggtgccgctgcaaaatctgttactgcacctcttgaccgtatcaagctcctcatgcagacacatggactaagagctgggcaagaagctgcaaagaaaggaatcggattcattgaggcatttgcattgattgggaaggaggaaggtatcaaaggatattggaaaggaaaccttccacaggtgatacggatcataccttatagtgcggtgcagttatttgcttatgaaacgtacaagaaactttttcaaggaaaggatggggagctttctgtcattggaagactagcagcaagtgcttgtgctggcatgacttctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49033" stop="45362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48733" g_stop="48402" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46831" g_stop="46775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="389" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46044" g_stop="45982" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="452" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45885" g_stop="45829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="509" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45828" i_stop="45745" i_length="84">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45744" g_stop="45662" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="592" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E269944" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48733" e_stop="48402"/>
          <exon e_start="46831" e_stop="46775"/>
          <exon e_start="46044" e_stop="45982"/>
          <exon e_start="45885" e_stop="45829"/>
          <exon e_start="45744" e_stop="45662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAGGTATGTATTGCTGTGTTGCTTGTTGTTACTTTCTGAGATATACAACATAGACAAGCTATGTTATTGAGTTCCCAGAAGTCTGGTGTTTCCTATTCTCTGTAGTTTATATTGTACAGAGTTTTAGCTATGATGATTGATCCGAAAGACTAAAGGAGTGATCTGCTGTATCATAGTTAGGAACTATTTTACTGGGAAAGACGAAGGCTCTCCCTTACAGTCTTCACTTGAGGGTAGAATTCCAGTCAACTTGTCAGTCAGCATTCATAACTGACTTCTACCACCGACTAAAAAAATGTAGAATTTGGTATATGCCTCATTTTCCGTCTGTAGAAAGTTTTTTTTTTTTGGATGATAGACAGTATGATGAATATAGAAATCTAATAGTAGAAGACTTTCTGCCTATTTATTTTATTTTATTACTTCTTTTTACTTGGTTATAAACCTTTGAATCTCTCTGTAATGTTATATGTTGTGAAGCAATTGAGTCCCTCAGCGGTTAAAAAGTTTAAAAGACTACATTGAGTTTCTAAGGGTCCTAGTAATGGGTTTATCAGCTAAATGGGCTCTCCTTTTGGGTTATCCTAGTTAGTATATAGCCATTATGGTATTTTTTCTTCTATATGTCTTTTGTGCAAACCTCCCATAGGGTGATAATTCCCACTCATAGACGCCATCATTGGGTCATATGATTCTCAAGTTTTTGATATATGCCTGAAATTGGATTGTGCAGGCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAGGTATTTGCACCATTTTCCCAGAGTCACATTTCTAGTGGATTCTTGGTGATTGCTTTTTTAAGACATCAAGTTGATTATTTTCTTTTAATGGTTTAGGTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAGGTAATGAAACATCTTTGGAGAAAACTTTAACACTGGTTTGATTGTTTGGCTAGAATGAAGTTGATTTGACACTTCTATTTACAGAAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAGGTGCTTGTGCTGGCATGACTTCTACTTT</genome_strand>
        <mrna_strand>CCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAG................................................................................................GTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAG....................................................................................AAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAAGTGCTTGTGCTGGCATGACTTCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E292327" ref_strand="+" ref_description="SGN-E292327 [cLET-1-A2]">
      <seq>cgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttcatcctacaacaactcagcttttaaagcaccctttggctatggttgctttgattcccagagaagctgcattgtttgctgcaggtgctattgctggtgccgctgcaaaatctgttactgcacctcttgaccgtatcaagctcctcatgcagacacatggactaagagctgggcaagaagctgcaaagaaaggaatcggattcattgaggcatttgcattgattgggaaggaggaaggtatcaaaggatattggaaaggaaaccttccacaggtgatacggatcataccttatagtgcggcgcatttagttgcttatgaaacgtacaagaaactttttcaaggaaaggatggggagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49037" stop="45413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48737" g_stop="48402" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46831" g_stop="46775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="393" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46044" g_stop="45982" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="456" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45885" g_stop="45829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="513" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45828" i_stop="45745" i_length="84">
            <donor d_prob="0.823" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45744" g_stop="45713" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="545" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E292327" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48737" e_stop="48402"/>
          <exon e_start="46831" e_stop="46775"/>
          <exon e_start="46044" e_stop="45982"/>
          <exon e_start="45885" e_stop="45829"/>
          <exon e_start="45744" e_stop="45713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAGGTATGTATTGCTGTGTTGCTTGTTGTTACTTTCTGAGATATACAACATAGACAAGCTATGTTATTGAGTTCCCAGAAGTCTGGTGTTTCCTATTCTCTGTAGTTTATATTGTACAGAGTTTTAGCTATGATGATTGATCCGAAAGACTAAAGGAGTGATCTGCTGTATCATAGTTAGGAACTATTTTACTGGGAAAGACGAAGGCTCTCCCTTACAGTCTTCACTTGAGGGTAGAATTCCAGTCAACTTGTCAGTCAGCATTCATAACTGACTTCTACCACCGACTAAAAAAATGTAGAATTTGGTATATGCCTCATTTTCCGTCTGTAGAAAGTTTTTTTTTTTTGGATGATAGACAGTATGATGAATATAGAAATCTAATAGTAGAAGACTTTCTGCCTATTTATTTTATTTTATTACTTCTTTTTACTTGGTTATAAACCTTTGAATCTCTCTGTAATGTTATATGTTGTGAAGCAATTGAGTCCCTCAGCGGTTAAAAAGTTTAAAAGACTACATTGAGTTTCTAAGGGTCCTAGTAATGGGTTTATCAGCTAAATGGGCTCTCCTTTTGGGTTATCCTAGTTAGTATATAGCCATTATGGTATTTTTTCTTCTATATGTCTTTTGTGCAAACCTCCCATAGGGTGATAATTCCCACTCATAGACGCCATCATTGGGTCATATGATTCTCAAGTTTTTGATATATGCCTGAAATTGGATTGTGCAGGCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAGGTATTTGCACCATTTTCCCAGAGTCACATTTCTAGTGGATTCTTGGTGATTGCTTTTTTAAGACATCAAGTTGATTATTTTCTTTTAATGGTTTAGGTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAGGTAATGAAACATCTTTGGAGAAAACTTTAACACTGGTTTGATTGTTTGGCTAGAATGAAGTTGATTTGACACTTCTATTTACAGAAACTTTTTCAAGGAAAGGATGGGGAGCTTTC</genome_strand>
        <mrna_strand>CGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAG................................................................................................GTGATACGGATCATACCTTATAGTGCGGCGCATTTAGTTGCTTATGAAACGTACAAG....................................................................................AAACTTTTTCAAGGAAAGGATGGGGAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E292328" ref_strand="+" ref_description="SGN-E292328 [cLET-1-A4]">
      <seq>cgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttcatcctacaacaactcagcttttaaagcaccctttggctatggttgctttgattcccagagaagctgcattgtttgctgcaggtgctattgctggtgccgctgcaaaatctgttactgcacctcttgaccgtatcaagctcctcatgcagacacatggactaagagctgggcaagaagctgcaaagaaaggaatcggattcattgaggcatttgcattgattgggaaggaggaaggtatcaaaggatattggaaaggaaaccttccacaggtgatacggatcataccttatagtgcggcgcatttagttgcttatgaaacgtacaagaaactttttcaaggaaaggatggggagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49037" stop="45413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48737" g_stop="48402" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46831" g_stop="46775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="393" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46044" g_stop="45982" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="456" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45885" g_stop="45829" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="513" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45828" i_stop="45745" i_length="84">
            <donor d_prob="0.823" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45744" g_stop="45713" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="545" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E292328" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48737" e_stop="48402"/>
          <exon e_start="46831" e_stop="46775"/>
          <exon e_start="46044" e_stop="45982"/>
          <exon e_start="45885" e_stop="45829"/>
          <exon e_start="45744" e_stop="45713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAGGTATGTATTGCTGTGTTGCTTGTTGTTACTTTCTGAGATATACAACATAGACAAGCTATGTTATTGAGTTCCCAGAAGTCTGGTGTTTCCTATTCTCTGTAGTTTATATTGTACAGAGTTTTAGCTATGATGATTGATCCGAAAGACTAAAGGAGTGATCTGCTGTATCATAGTTAGGAACTATTTTACTGGGAAAGACGAAGGCTCTCCCTTACAGTCTTCACTTGAGGGTAGAATTCCAGTCAACTTGTCAGTCAGCATTCATAACTGACTTCTACCACCGACTAAAAAAATGTAGAATTTGGTATATGCCTCATTTTCCGTCTGTAGAAAGTTTTTTTTTTTTGGATGATAGACAGTATGATGAATATAGAAATCTAATAGTAGAAGACTTTCTGCCTATTTATTTTATTTTATTACTTCTTTTTACTTGGTTATAAACCTTTGAATCTCTCTGTAATGTTATATGTTGTGAAGCAATTGAGTCCCTCAGCGGTTAAAAAGTTTAAAAGACTACATTGAGTTTCTAAGGGTCCTAGTAATGGGTTTATCAGCTAAATGGGCTCTCCTTTTGGGTTATCCTAGTTAGTATATAGCCATTATGGTATTTTTTCTTCTATATGTCTTTTGTGCAAACCTCCCATAGGGTGATAATTCCCACTCATAGACGCCATCATTGGGTCATATGATTCTCAAGTTTTTGATATATGCCTGAAATTGGATTGTGCAGGCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAGGTATTTGCACCATTTTCCCAGAGTCACATTTCTAGTGGATTCTTGGTGATTGCTTTTTTAAGACATCAAGTTGATTATTTTCTTTTAATGGTTTAGGTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAGGTAATGAAACATCTTTGGAGAAAACTTTAACACTGGTTTGATTGTTTGGCTAGAATGAAGTTGATTTGACACTTCTATTTACAGAAACTTTTTCAAGGAAAGGATGGGGAGCTTTC</genome_strand>
        <mrna_strand>CGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAG................................................................................................GTGATACGGATCATACCTTATAGTGCGGCGCATTTAGTTGCTTATGAAACGTACAAG....................................................................................AAACTTTTTCAAGGAAAGGATGGGGAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E271996" ref_strand="+" ref_description="SGN-E271996 [cLEM-8-M8]">
      <seq>aaaccccttatcttgttgactacagaagaagaaaaagcttcagtcctctggatctaccatgaggaagaaccgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggtagtatttcgttatatgagaatttggatgaaaaagcctttaaagggtttcatcctacaacaactcagcttttaaagcaccctttggctatggttgctttgattcccagagaagctgcattgtttgctgcaagtgctattgctggtgccgctgcaaaatctgatactgtacctcttgaccgtatcaagctcctcatgcagacacatggactaagagctgggcaagaagctgcaaagaaaggaatcggattcattgaggcatctgcattgattgggaaggaagaaagtcttaaaggatattggaaaggaaaccttccacaggtgatacggatcataccttatagtgcggtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49107" stop="45553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48807" g_stop="48402" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46831" g_stop="46775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="463" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46044" g_stop="45982" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="526" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96">
            <donor d_prob="0.964" d_score="0.92"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45885" g_stop="45853" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="559" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E271996" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48807" e_stop="48402"/>
          <exon e_start="46831" e_stop="46775"/>
          <exon e_start="46044" e_stop="45982"/>
          <exon e_start="45885" e_stop="45853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCTTATCTTGTTGACAACAGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAGGTATGTATTGCTGTGTTGCTTGTTGTTACTTTCTGAGATATACAACATAGACAAGCTATGTTATTGAGTTCCCAGAAGTCTGGTGTTTCCTATTCTCTGTAGTTTATATTGTACAGAGTTTTAGCTATGATGATTGATCCGAAAGACTAAAGGAGTGATCTGCTGTATCATAGTTAGGAACTATTTTACTGGGAAAGACGAAGGCTCTCCCTTACAGTCTTCACTTGAGGGTAGAATTCCAGTCAACTTGTCAGTCAGCATTCATAACTGACTTCTACCACCGACTAAAAAAATGTAGAATTTGGTATATGCCTCATTTTCCGTCTGTAGAAAGTTTTTTTTTTTTGGATGATAGACAGTATGATGAATATAGAAATCTAATAGTAGAAGACTTTCTGCCTATTTATTTTATTTTATTACTTCTTTTTACTTGGTTATAAACCTTTGAATCTCTCTGTAATGTTATATGTTGTGAAGCAATTGAGTCCCTCAGCGGTTAAAAAGTTTAAAAGACTACATTGAGTTTCTAAGGGTCCTAGTAATGGGTTTATCAGCTAAATGGGCTCTCCTTTTGGGTTATCCTAGTTAGTATATAGCCATTATGGTATTTTTTCTTCTATATGTCTTTTGTGCAAACCTCCCATAGGGTGATAATTCCCACTCATAGACGCCATCATTGGGTCATATGATTCTCAAGTTTTTGATATATGCCTGAAATTGGATTGTGCAGGCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAGGTATTTGCACCATTTTCCCAGAGTCACATTTCTAGTGGATTCTTGGTGATTGCTTTTTTAAGACATCAAGTTGATTATTTTCTTTTAATGGTTTAGGTGATACGGATCATACCTTATAGTGCGGTGCAG</genome_strand>
        <mrna_strand>AAACCCCTTATCTTGTTGACTACAGAAGAAGAAAAAGCTTCAGTCCTCTGGATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTAGTATTTCGTTATATGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAAGTGCTATTGCTGGTGCCGCTGCAAAATCTGATACTGTACCTCTTGACCGTATCAAGCTCCTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTGCATTGATTGGGAAGGAAGAAAGTCTTAAAGGATATTGGAAAGGAAACCTTCCACAG................................................................................................GTGATACGGATCATACCTTATAGTGCGGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E272871" ref_strand="+" ref_description="SGN-E272871 [cLEM-25-B23]">
      <seq>aaaccccttatcttgttgacaacagaggaagaaaaagcttcattcctctgtatctaccatgaggaagaaccgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttcatcctacaacaactcagcttttaaagcaccctttggctatggttgctttgattcccagagaagctgcattgtttgctgcatgtgctattgctggtgccgctgcaaaatctgttactgcacctcttgaccgtatcaagctcctcatgcagacacatggactaagagctgggcaagaagctgcaaagaaaggaatcggattcattgaggcatttgcattgattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49107" stop="45727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48807" g_stop="48402" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46831" g_stop="46775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="463" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46044" g_stop="46027" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="481" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E272871" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48807" e_stop="48402"/>
          <exon e_start="46831" e_stop="46775"/>
          <exon e_start="46044" e_stop="46027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCTTATCTTGTTGACAACAGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAGGTATGTATTGCTGTGTTGCTTGTTGTTACTTTCTGAGATATACAACATAGACAAGCTATGTTATTGAGTTCCCAGAAGTCTGGTGTTTCCTATTCTCTGTAGTTTATATTGTACAGAGTTTTAGCTATGATGATTGATCCGAAAGACTAAAGGAGTGATCTGCTGTATCATAGTTAGGAACTATTTTACTGGGAAAGACGAAGGCTCTCCCTTACAGTCTTCACTTGAGGGTAGAATTCCAGTCAACTTGTCAGTCAGCATTCATAACTGACTTCTACCACCGACTAAAAAAATGTAGAATTTGGTATATGCCTCATTTTCCGTCTGTAGAAAGTTTTTTTTTTTTGGATGATAGACAGTATGATGAATATAGAAATCTAATAGTAGAAGACTTTCTGCCTATTTATTTTATTTTATTACTTCTTTTTACTTGGTTATAAACCTTTGAATCTCTCTGTAATGTTATATGTTGTGAAGCAATTGAGTCCCTCAGCGGTTAAAAAGTTTAAAAGACTACATTGAGTTTCTAAGGGTCCTAGTAATGGGTTTATCAGCTAAATGGGCTCTCCTTTTGGGTTATCCTAGTTAGTATATAGCCATTATGGTATTTTTTCTTCTATATGTCTTTTGTGCAAACCTCCCATAGGGTGATAATTCCCACTCATAGACGCCATCATTGGGTCATATGATTCTCAAGTTTTTGATATATGCCTGAAATTGGATTGTGCAGGCATTTGCATTGATTGGG</genome_strand>
        <mrna_strand>AAACCCCTTATCTTGTTGACAACAGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCATGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGCATTGATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E435585" ref_strand="+" ref_description="SGN-E435585 [STM-61-F2]">
      <seq>gcttcattcctctgtatccaccatgaggaagaaccgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgccagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttaatcctacaacaactcagctcttaaagcaccctttggctatggttgctttggttcctagagaagctgcattgtttgctgcaggtgctattgctggtgccgctgcaaaatctgttactgcacctcttgaccgtatcaagctcctcatgcagacacatggactaagagctgggcaagaagctgcaaagaaaggaatcggattcattgaagcatttgcattgattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49071" stop="45727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48771" g_stop="48402" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46831" g_stop="46775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="427" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46044" g_stop="46027" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="445" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E435585" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48771" e_stop="48402"/>
          <exon e_start="46831" e_stop="46775"/>
          <exon e_start="46044" e_stop="46027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAGGTATGTATTGCTGTGTTGCTTGTTGTTACTTTCTGAGATATACAACATAGACAAGCTATGTTATTGAGTTCCCAGAAGTCTGGTGTTTCCTATTCTCTGTAGTTTATATTGTACAGAGTTTTAGCTATGATGATTGATCCGAAAGACTAAAGGAGTGATCTGCTGTATCATAGTTAGGAACTATTTTACTGGGAAAGACGAAGGCTCTCCCTTACAGTCTTCACTTGAGGGTAGAATTCCAGTCAACTTGTCAGTCAGCATTCATAACTGACTTCTACCACCGACTAAAAAAATGTAGAATTTGGTATATGCCTCATTTTCCGTCTGTAGAAAGTTTTTTTTTTTTGGATGATAGACAGTATGATGAATATAGAAATCTAATAGTAGAAGACTTTCTGCCTATTTATTTTATTTTATTACTTCTTTTTACTTGGTTATAAACCTTTGAATCTCTCTGTAATGTTATATGTTGTGAAGCAATTGAGTCCCTCAGCGGTTAAAAAGTTTAAAAGACTACATTGAGTTTCTAAGGGTCCTAGTAATGGGTTTATCAGCTAAATGGGCTCTCCTTTTGGGTTATCCTAGTTAGTATATAGCCATTATGGTATTTTTTCTTCTATATGTCTTTTGTGCAAACCTCCCATAGGGTGATAATTCCCACTCATAGACGCCATCATTGGGTCATATGATTCTCAAGTTTTTGATATATGCCTGAAATTGGATTGTGCAGGCATTTGCATTGATTGGG</genome_strand>
        <mrna_strand>GCTTCATTCCTCTGTATCCACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCCAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTAATCCTACAACAACTCAGCTCTTAAAGCACCCTTTGGCTATGGTTGCTTTGGTTCCTAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGCATTGATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E466576" ref_strand="+" ref_description="SGN-E466576 [cPRO-24-N6]">
      <seq>gcttcattcctctgtatccaccatgaggaagaaccgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgccagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttaatcctacaacaactcagctcttaaagcaccctttggctatggttgctttggttcctagagaagctgcattgtttgctgcaggtgctattgctggtgccgctgcaaaatctgttactgcacctcttgaccgtatcaagctcctcatgcagacacatggactaagagctgggcaagaagctgcnaagaaaggaatcggattcattgaggcatttgcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49071" stop="46469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48771" g_stop="48402" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46831" g_stop="46775" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="427" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E466576" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E466576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48771" e_stop="48402"/>
          <exon e_start="46831" e_stop="46775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTGAAATTAAAGAGTTTTGTTGAAATTAGAAAAGAATTTCAGACAATTTAAATGAAATGGGAGGGAGTAATGTTTTTCGGTGTTTTTATGTATCATATTGCTGCTGTTTCCTTGGATGATTGAATTTTCTTAGTTGAACTTCAGGCTTAATTTGTTGATAAGGTTTGTTTACTTCGGGATTGGAATTTTAGTCTTTTGTTTGTTCAACTGAAGAAAATATTTTCCATACAGAATCATTTTATACACTTTTTGAAGTAAATAAATGGGTCCCGATAAATCGGAGAGAATATCCCCGAGGGCTTTGATTCAAAAATAAAGAGAGTATAGCATGGGTTGTGTGGCAAGAACAAGTTTGAATCTTGGCAAGTGAAACAAGAAAAAATAGACTGGATGAAGTGACAATAGATATAGAGGATTCTTATGGATTTAATGATACTTTCTAAGTAGTAGACTGTAACAAAATGTACAAATTGAACTACAGTAACTAAGAGTGGAATGCAAAATGACATTGGAGCATATTTGGTTAGTCGACTGGATAAAATGTATGAGTTATGGCCAGATAAGTCATCCACTGATAAGAATAATGACTTAGTTGCGGCCAAGTGCGATGGTACTTCAATTCACATGAATTCTGTTTGGTATTACTGGCGTTTGCAAATGTTTGCGTTATTTTTTCATAGTTTTGAAGGATGGCTAGTTTGCTGAATTACTCTTTCAAGGCTTTATAACCTTTAAACTTCTATGATTTCTGAAATGGTAGCCAAAAAGGCCACATCCTTTGTTGGAGTACTTTCAGTCAACTTCTACACTTGCCATCTTATGCTATATTCCTGAATGTGTAGCTTAAAATCCCAAAATAGCTTATTTGTCCAGTCTTTCACGTCTCTGGAAGAGGTAGAGAATGGGCTTGCATTCAGCTGCAATGTGGTTATGCTATTGACCTGTTAACATTAAAAGGAACAATGTGCATATTACTGCAGATTTTGCTGTACTATGAGGAGGAGAAAGAATGACTTGCCTGATAAGTATCGGTGCAAGAATGATTTTTGGGGTTACACCTCTTCGTCTCACCACTCTTCTGGTGTGAGCTCTGTTTGAGAATAACAAAAGTTTCTGTGTTGGAACTTGACATATTGCAAGCATCCTTTCTCACTATGCAGTTGTATAGCCGATATGGAAATCTTAAGCTCATACTTATATTCATATACATTGCCTCAATTTTGTACTTTGCACTTGCTATTATCTTCAGATGATGACACCTTTTCTTGTTAAAATCCTTCATACGCCCATCGATTCAGGTTACTCATATGGTGACTCTATGGCATTCTGAGTTTGAAATGCATTTTGTCTTTAACCACAACCACTTTCATATTTTCTATTTTGCGCTTATTTCTTCCTTATTTTCGTGTTGGTTGCAAGACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAG</genome_strand>
        <mrna_strand>GCTTCATTCCTCTGTATCCACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCCAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTAATCCTACAACAACTCAGCTCTTAAAGCACCCTTTGGCTATGGTTGCTTTGGTTCCTAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATGGACTAAGAGCTGGGCAAGAAGCTGCNAAGAAAGGAATCGGATTCATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E312110" ref_strand="+" ref_description="SGN-E312110 [cTOA-11-N19]">
      <seq>agaggaagaaaaagcttcattcctctgtatctaccatgaggaagaaccgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttcatcctacaacaactcagcttttaaagcaccctttggctatggttgctttgattcccagagaagctgcattgtttgctgcaggtgctattgctggtgccgctgcaaaatctgttactgcacctcttgaccgtatcaagctcctcatgcaggttcttttatgaaacccctttatgtaattgtacattcatttcattttgtttgccttgttttgactttgacgtggtgtttagaagtatcaaaattccgttttaatcttgaatcttgtggtgttaaacacaattggtgtaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49084" stop="48014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48784" g_stop="48248" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E312110" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48784" e_stop="48248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTG</genome_strand>
        <mrna_strand>AGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCA-TTTCATTTTGTTTG-CC-TTGTTTTGACTTTGACGT--GGTGTTTAGAAGTATCAAAA-TTCCG-TTTTAATCTTGAA-TCTTGTGGT-GTTAAACACAATT-GGTGTAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E266874" ref_strand="+" ref_description="SGN-E266874 [cLEI-7-A3]">
      <seq>gaggaagaaaaagcttcattcctctgtatctaccatgaggaagaaccgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttgatcctacaacaactcagcttttaaagcaccctttggctatggttgctttgattcccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49083" stop="48193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48783" g_stop="48493" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E266874" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48783" e_stop="48493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAG</genome_strand>
        <mrna_strand>GAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTGATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E293365" ref_strand="+" ref_description="SGN-E293365 [cLET-18-D7]">
      <seq>cgacccgttttggtatccatggacattccggctcttgaattgtccaacaccagtattcaatcttacccatcacaacaatggaagaacaaatttgtcggttctgctagtttttctaaagaaattgggtgtaattttggttgtatttcgttatcggagaatttggatgaaaaagcctttaaagggtttcatcctacaacaactcagcttttaaagcaccctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="49037" stop="48216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48737" g_stop="48516" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E293365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48737" e_stop="48516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTG</genome_strand>
        <mrna_strand>CGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E286796" ref_strand="+" ref_description="SGN-E286796 [cLES-14-E7]">
      <seq>tttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttgtggtggtattgcaaatatatcaaaggaacaaaaatatgataggaaacaagcagatgtgaactctctacttttattattgggattattatgtcacgtgttgcctttgatgtttcgttatgctggagttggagaatcagcagcaataacagcacaagcaacattgaatctatcaagagttagctgcattggtatgcttcttgcttattttggttatcttgtgttccaattgtggactcaccgacaacttttcgacgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="52523" stop="50991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52350" g_stop="52342" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="38" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="235" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51505" g_stop="51291" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="449" r_length="214" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E286796" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52350" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
          <exon e_start="51505" e_stop="51291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGGGTAAGTAATTTAGTTATTTATTTTATAACATAGTGATATTTCAACTGTGTCACGTAGATTGAGATGTTAATTTTTTGTGTGATTAAAACAGAAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATCAAGAGTTAGCTGCATTGTTATGCTTCTTGCTAAGTTTGGTTATCTTGTGTTCCAATTGTGGACTCACCGACAACTTTTTCGACGCAC</genome_strand>
        <mrna_strand>TTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG...........................................................................................AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATCAAGAGTTAGCTGCATTGGTATGCTTCTTGCTTATTTTGGTTATCTTGTGTTCCAATTGTGGACTCACCGACAAC-TTTTCGACGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E445095" ref_strand="+" ref_description="SGN-E445095 [cSTA-44-L9]">
      <seq>ctccattggctgaacgtgtcagcttcttgacagaacaaatagctttctttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccacagaacttataatagcaatatttgctctaatccaacataaagtggatgttgtcaaatattcactcttgggatctattctttcaaatcttcttttggttcttggcacttcattattttgtggtggcattgcaaatatatccaaggaacaaaaatatgatagaaaacaagcagatgtgaactctctacttttgctgttgggattattatgtcatgtgttgcctttgatgttccgttatgctggagttggagaatcagcagcaataacagcacaagcaacattgaatctatcaagagtcagctgcattgttatgctacttgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="52675" stop="51047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52375" g_stop="52342" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="63" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="260" r_length="197" r_score="0.949"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91">
            <donor d_prob="0.979" d_score="0.92"/>
            <acceptor a_prob="0.795" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51505" g_stop="51345" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="421" r_length="161" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E445095" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52375" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
          <exon e_start="51505" e_stop="51345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGGGTAAGTAATTTAGTTATTTATTTTATAACATAGTGATATTTCAACTGTGTCACGTAGATTGAGATGTTAATTTTTTGTGTGATTAAAACAGAAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATCAAGAGTTAGCTGCATTGTTATGCTTCTTGCTAA</genome_strand>
        <mrna_strand>CTCCATTGGCTGAACGTGTCAGCTTCTTGACAGA........................................................................................................................ACAAATAGCTTTCTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACAGAACTTATAATAGCAATATTTGCTCTAATCCAACATAAAGTGGATGTTGTCAAATATTCACTCTTGGGATCTATTCTTTCAAATCTTCTTTTGGTTCTTGGCACTTCATTATTTTGTGGTGGCATTGCAAATATATCCAAGGAACAAAAATATGATAGA...........................................................................................AAACAAGCAGATGTGAACTCTCTACTTTTGCTGTTGGGATTATTATGTCATGTGTTGCCTTTGATGTTCCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATCAAGAGTCAGCTGCATTGTTATGCTACTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E346291" ref_strand="+" ref_description="SGN-E346291 [cTOF-23-N19]">
      <seq>tcaatataaaaccaaaataagttattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttgtggtggtattgcaaatatatcaaaggaacaaaaatatgataggaaacaagcagatgtgaactctctacttttattattgggattattatgtcacgtgttgcctttgatggttcgttatgctggagtggnagaatcagcagcaataacagcacaagcaacattgaatctatcagagttagctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53535" stop="51064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53235" g_stop="52889" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="415" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="444" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="641" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51505" g_stop="51364" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="782" r_length="141" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E346291" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53235" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
          <exon e_start="51505" e_stop="51364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGGGTAAGTAATTTAGTTATTTATTTTATAACATAGTGATATTTCAACTGTGTCACGTAGATTGAGATGTTAATTTTTTGTGTGATTAAAACAGAAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATCAAGAGTTAGCTGCA</genome_strand>
        <mrna_strand>TCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG...........................................................................................AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGGTTCGTTATGCTGGAGTGGNAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATC-AGAGTTAGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E348859" ref_strand="+" ref_description="SGN-E348859 [cTOF-29-H24]">
      <seq>tcaatataaaaccaaaataagttattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttgtgggtggtattgcaaatatatcaaaggaacaaaaatatgataggaaacaagcagatgtgaactctctacttttattattgggattattatgtncacgtgttgccttttgatggtttcgttatgcctggagtttggagaatcagcagncataacagcacaagcaacattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53535" stop="51084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53235" g_stop="52889" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="415" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="444" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="642" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.795" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51505" g_stop="51384" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="769" r_length="127" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E348859" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53235" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
          <exon e_start="51505" e_stop="51384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGT-GGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGGGTAAGTAATTTAGTTATTTATTTTATAACATAGTGATATTTCAACTGTGTCACGTAGATTGAGATGTTAATTTTTTGTGTGATTAAAACAGAAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGT-CACGTGTTGCC-TTTGAT-GTTTCGTTATG-CTGGAG-TTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAA</genome_strand>
        <mrna_strand>TCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG...........................................................................................AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTNCACGTGTTGCCTTTTGATGGTTTCGTTATGCCTGGAGTTTGGAGAATCAGCAGNCATAACAGCACAAGCAACATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E722318" ref_strand="+" ref_description="SGN-E722318 [FC16DF08]">
      <seq>cggccgaattgaagatgagagttatctcaatataaaaccaaaataagttattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttgtggtggtattgcaaatatatcaaaggaacaaaaatatgataggaaacaagcagatgtgaactctctacttttattattgggattattatgtcatgtgttgcctttgatgtttcgttatgctggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53554" stop="51121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53261" g_stop="52889" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="441" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="470" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="667" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51505" g_stop="51421" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="752" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E722318" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53261" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
          <exon e_start="51505" e_stop="51421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACTCATACAAGATGAGAGTTATCTCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGGGTAAGTAATTTAGTTATTTATTTTATAACATAGTGATATTTCAACTGTGTCACGTAGATTGAGATGTTAATTTTTTGTGTGATTAAAACAGAAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTG</genome_strand>
        <mrna_strand>CGGCCGAATTGAAGATGAGAGTTATCTCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG...........................................................................................AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCATGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E444076" ref_strand="+" ref_description="SGN-E444076 [cSTA-41-E6]">
      <seq>cacaatataaaaccaaaatacacacaataagttattttccaaaaaaacaaaaacaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggacatattaagccattaagcaaagagatgcgccatggccatggtcgtagccatggacgaacagctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatcttacccttgtacggaaagtaccttgtgccattgttagagatgttcttgctaatgttcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattgttgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagcttcttgacagaacaaatagctttctttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccacagaacttataatagcaatatttgctctaatccaacataaagtggatgttgtcaaatattcactcttgggatctattctttcaaatcttcttttggttcttggcacttcattattttgtggtggcattgcaaatatatccaaggaacaaaaatatgatagaaaacaagcagatgtgaactctctacttttgctgttgggattattatgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53536" stop="51156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53188" g_stop="52889" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="349" r_length="300" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="417" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="446" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="643" r_length="197" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91">
            <donor d_prob="0.979" d_score="0.92"/>
            <acceptor a_prob="0.795" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51505" g_stop="51455" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="694" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E444076" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53188" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
          <exon e_start="51505" e_stop="51455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGGGTAAGTAATTTAGTTATTTATTTTATAACATAGTGATATTTCAACTGTGTCACGTAGATTGAGATGTTAATTTTTTGTGTGATTAAAACAGAAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCAC</genome_strand>
        <mrna_strand>AAAACAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCGCCATGGCCATGGTCGTAGCCATGGACGAACAGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCTTGTACGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTCTTGACAGA........................................................................................................................ACAAATAGCTTTCTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACAGAACTTATAATAGCAATATTTGCTCTAATCCAACATAAAGTGGATGTTGTCAAATATTCACTCTTGGGATCTATTCTTTCAAATCTTCTTTTGGTTCTTGGCACTTCATTATTTTGTGGTGGCATTGCAAATATATCCAAGGAACAAAAATATGATAGA...........................................................................................AAACAAGCAGATGTGAACTCTCTACTTTTGCTGTTGGGATTATTATGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E340730" ref_strand="+" ref_description="SGN-E340730 [cTOF-5-C11]">
      <seq>caatataaaaccaaaataagttattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttgtggtgggattgcaaatatatcaaaggaacaaaaatatgataggaaacaagcagatgtgaactctctacttttattattgggattattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53534" stop="51160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53234" g_stop="52889" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="414" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="443" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="640" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51505" g_stop="51460" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="686" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E340730" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53234" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
          <exon e_start="51505" e_stop="51460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGGGTAAGTAATTTAGTTATTTATTTTATAACATAGTGATATTTCAACTGTGTCACGTAGATTGAGATGTTAATTTTTTGTGTGATTAAAACAGAAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTAT</genome_strand>
        <mrna_strand>CAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGGATTGCAAATATATCAAAGGAACAAAAATATGATAGG...........................................................................................AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E456405" ref_strand="+" ref_description="SGN-E456405 [cSTS-29-M18]">
      <seq>caaaatacacacaataagttattttccaaaaaaacaaaaacaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggacatattaagccattaagcaaagagatgcgccatggccatggtcgtagccatggacgaacagctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatcttacccttgtacggaaagtaccttgtgccattgttagagatgttcttgctaatgttcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattgttgcccattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagcttcttgacagaacaaatagctttctttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccacagaacttataatagcaatatttgctctaatccaacataaagtggatgttgtcaaatattcactcttgggatctattctttcaaatcttcttttggttcttggcacttncattatttgtggtggcattgcaaatatatccaaggaaccaaaatatgatagaaaacaagcagatgtgaactctctacttttgctgttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53528" stop="51166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53188" g_stop="52889" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="336" r_length="300" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="404" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="433" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="630" r_length="197" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91">
            <donor d_prob="0.979" d_score="0.88"/>
            <acceptor a_prob="0.795" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51505" g_stop="51466" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="670" r_length="40" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E456405" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53188" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
          <exon e_start="51505" e_stop="51466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGGGTAAGTAATTTAGTTATTTATTTTATAACATAGTGATATTTCAACTGTGTCACGTAGATTGAGATGTTAATTTTTTGTGTGATTAAAACAGAAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGAT</genome_strand>
        <mrna_strand>AAAACAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCGCCATGGCCATGGTCGTAGCCATGGACGAACAGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCTTGTACGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCCCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTCTTGACAGA........................................................................................................................ACAAATAGCTTTCTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACAGAACTTATAATAGCAATATTTGCTCTAATCCAACATAAAGTGGATGTTGTCAAATATTCACTCTTGGGATCTATTCTTTCAAATCTTCTTTTGGTTCTTGGCACTTNCATTATTTGTGGTGGCATTGCAAATATATCCAAGGAACCAAAATATGATAGA...........................................................................................AAACAAGCAGATGTGAACTCTCTACTTTTGCTGTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E343834" ref_strand="+" ref_description="SGN-E343834 [cTOF-12-I10]">
      <seq>tattttccaaagataaagaaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaagaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactctttttgtggtggtattgcaaatatatcaaaggaacaaaaatatgataggaaacaagcagatgtgaactctctacttttattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53513" stop="51269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53213" g_stop="52889" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="392" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="421" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="619" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.795" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51505" g_stop="51470" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="655" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E343834" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53213" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
          <exon e_start="51505" e_stop="51470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTC-TTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGGGTAAGTAATTTAGTTATTTATTTTATAACATAGTGATATTTCAACTGTGTCACGTAGATTGAGATGTTAATTTTTTGTGTGATTAAAACAGAAACAAGCAGATGTGAACTCTCTACTTTTATTATTG</genome_strand>
        <mrna_strand>TATTTTCCAAAGATAAAGA-AAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAAGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG...........................................................................................AAACAAGCAGATGTGAACTCTCTACTTTTATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E312780" ref_strand="+" ref_description="SGN-E312780 [cTOA-8-F4]">
      <seq>aaaaccaatttaagttattttccaaagaaaaagacaaagcgaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttgtggtggtattgcaaatatatcaaaggaacaaaaatatgataggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53528" stop="51297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53228" g_stop="52889" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="408" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="437" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51597" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="634" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E312780" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53228" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG</genome_strand>
        <mrna_strand>AAAACCAATTTAAGTTATTTTCCAAAGAAAAAGACAAAGCGAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E329406" ref_strand="+" ref_description="SGN-E329406 [cTOD-2-H8]">
      <seq>aaaccaaaataagttattttccaaagaaaaagacaaaagagaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaagaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttgtggtggtattgcaaatatatcaaaggaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53527" stop="51306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53227" g_stop="52889" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="407" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="436" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51606" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="624" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E329406" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53227" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAA</genome_strand>
        <mrna_strand>AAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAAGAGAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAAGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E333816" ref_strand="+" ref_description="SGN-E333816 [cTOD-22-J20]">
      <seq>ttatctcaatataaaaccaaaataagttattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttgtggtggtatttgcaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53540" stop="51323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53240" g_stop="52889" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="420" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="449" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51621" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="622" r_length="173" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E333816" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53240" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATA</genome_strand>
        <mrna_strand>TTATCTCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTTGCAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E329713" ref_strand="+" ref_description="SGN-E329713 [cTOD-3-L2]">
      <seq>acaaatagtggagcaaaaaatattatacaaaaaaaattaaagggattcaactcaacgtttactttctatgcatataaattaattttaatcttctattatatactacgtgatggaaatttgaatgaatcccgccatgcattaattgaatacataatataatttaaaagtgttattttatttaacaacacaatttgttttctttttcttttttttgaataactaaaagatccgttgaaagatgtgaatctgagaatatttttttgtgatttcttgattaatttattttataatactgacattttatttttctgtattatatcagtcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttggttcttggcacttcactcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53031" stop="51340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52731" g_stop="52342" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="419" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51793" g_stop="51640" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="573" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E329713" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52731" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTG</genome_strand>
        <mrna_strand>ACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTGTATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E441326" ref_strand="+" ref_description="SGN-E441326 [cSTA-30-C19]">
      <seq>atacacacaataagttattttccaaaaaaacaaaaacaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggacatattaagccattaagcaaagagatgcgccatggccatggtcgtagccatggacgaacagctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatcttacccttgtacggaaagtaccttgtgccattgttagagatgttcttgctaatgttcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattgttgcccattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagcttcttgacagaacaaatagctttctttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccacagaacttataatagcaatatttgctctaatccaacataaagtggatgttgtcaaatattcactcttgggatctattctttcaaatcttcttttggttcttggcacttcattatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53527" stop="51341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53188" g_stop="52889" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="332" r_length="300" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="400" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="429" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51641" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="582" r_length="153" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E441326" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53188" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTT</genome_strand>
        <mrna_strand>AAAACAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCGCCATGGCCATGGTCGTAGCCATGGACGAACAGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCTTGTACGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCCCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTCTTGACAGA........................................................................................................................ACAAATAGCTTTCTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACAGAACTTATAATAGCAATATTTGCTCTAATCCAACATAAAGTGGATGTTGTCAAATATTCACTCTTGGGATCTATTCTTTCAAATCTTCTTTTGGTTCTTGGCACTTCATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E342512" ref_strand="+" ref_description="SGN-E342512 [cTOF-8-B6]">
      <seq>tcaatataaaaccaaaataagttattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagaacaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgctgnaaaatattcactcttgggatctatccctacgaatcttcttttggttcttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53535" stop="51353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53235" g_stop="52889" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="415" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="444" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51653" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="585" r_length="141" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E342512" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53235" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCA</genome_strand>
        <mrna_strand>TCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................ACAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGCTGNAAAATATTCACTCTTGGGATCTATCCCTACGAATCTTCTTTTGGTTCTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E325813" ref_strand="+" ref_description="SGN-E325813 [cTOC-12-M6]">
      <seq>ataaaaccaaaataagttattttccaaagaaaaagacagaacgaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatctattctttcgaatcttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53530" stop="51363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53230" g_stop="52889" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="410" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="439" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51663" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="570" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E325813" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53230" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTG</genome_strand>
        <mrna_strand>ATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAGAACGAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E446435" ref_strand="+" ref_description="SGN-E446435 [cSTA-21-K14]">
      <seq>ataaaaccaaaatacacaaaataagttattttccaaaaatacaaaacaaaacaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggacatattaagccattaagcaaagagatgcgccatggccatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatcttacccttgtacggaaagtaccttgtgccattgttagagatgttcttgctaatgttcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattgttgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagcttcttgacagaacaaatagctttctttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccacagaacttataatagcaatatttgctctaatccaacataaagtggatgttgtcaaatattcactcttgggatctattctttcaaatcttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53501" stop="51363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53223" g_stop="52889" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="347" r_length="331" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="415" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="444" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51663" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="575" r_length="131" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E446435" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53223" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTG</genome_strand>
        <mrna_strand>CAAAATAAGTTATTTTCC-AA--AAA-TACAAAACAAAACAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCGCCATGGCCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCTTGTACGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTCTTGACAGA........................................................................................................................ACAAATAGCTTTCTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACAGAACTTATAATAGCAATATTTGCTCTAATCCAACATAAAGTGGATGTTGTCAAATATTCACTCTTGGGATCTATTCTTTCAAATCTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E426970" ref_strand="+" ref_description="SGN-E426970 [STM-47-F3]">
      <seq>ataaaaccaaaatacacaaaataagttattttccaaaaatacaaaacaaaacaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggacatattaagccattaagcaaagagatgcgccatggccatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatcttacccttgtacggaaagtaccttgtgccattgttagagatgttcttgctaatgttcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattgttgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagcttcttgacagagtaagttaaattattttttctatggtataatttgattattaaaattgtttacgagtcaatttgaattgattaataatcacctattattaatatttttgatcgttttgaattgcagacaaatagctttctttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccacagaacttataatagcaatatttgctctaatccacattaagtggatgttgtcaaatattcactcttgggatctattctttcaatcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53501" stop="51365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53223" g_stop="52889" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="347" r_length="331" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52193" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="559" r_length="212" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51793" g_stop="51665" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="686" r_length="127" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E426970" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53223" e_stop="52889"/>
          <exon e_start="52409" e_stop="52193"/>
          <exon e_start="51793" e_stop="51665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTT</genome_strand>
        <mrna_strand>CAAAATAAGTTATTTTCC-AA--AAA-TACAAAACAAAACAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCGCCATGGCCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCTTGTACGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTCTTGACAGAGTAAGTTAAATTATTT-TTTCTATGGTATAATTTGATTATTAAAATTGTTTACGAGTCAATTTGAATTGATTA--A-T-AATCACCTATTATTAATATTTTTGATCGTTTTGAATTGCAGACAAATAGCTTTCTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACAGAACTTATAATAGCAATATTTGCTCTAATC-CACATTAAGTGGATGTTGTCAAATATTCACTCTTGGGATCTATTCTTTC-AATCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E474661" ref_strand="+" ref_description="SGN-E474661 [cSTB-37-E18]">
      <seq>tataaaaccaaaatacacacaataagttattttccaaaaaaacaaaaacaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggacatattaagccattaagcaaagagatgcgccatggccatggtcgtagccatggacgaacagctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatcttacccttgtacggaaagtaccttgtgccattgttagagatgttcttgctaatgttcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattgttgcccattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagcttcttgacagaacaaatagctttctttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccacagaacttataatagcaatatttgctctaatccaacataaagtggatgttgtcaaatattcactcttgggatctattctttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53528" stop="51373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53188" g_stop="52889" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="344" r_length="300" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="412" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="441" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51673" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="562" r_length="121" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E474661" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53188" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAA</genome_strand>
        <mrna_strand>AAAACAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCGCCATGGCCATGGTCGTAGCCATGGACGAACAGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCTTGTACGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCCCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTCTTGACAGA........................................................................................................................ACAAATAGCTTTCTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACAGAACTTATAATAGCAATATTTGCTCTAATCCAACATAAAGTGGATGTTGTCAAATATTCACTCTTGGGATCTATTCTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E228291" ref_strand="+" ref_description="SGN-E228291 [cLED-2-L24]">
      <seq>tatctcaatataaaaccaaaataagttattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttgctttaatcgaacataaagtggatgttgtaaaatattcactcttgggatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53539" stop="51383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53239" g_stop="52889" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="419" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="448" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51683" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="559" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E228291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53239" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTA</genome_strand>
        <mrna_strand>TATCTCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E475837" ref_strand="+" ref_description="SGN-E475837 [cSTB-41-P2]">
      <seq>cttcatcatcaccagcagcagaaacatggctcttagaaaatggacatattaagccattaagcaaagagatgcgccatggccatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatcttacccttgtacggaaagtaccttgtgccattgttagagatgttcttgctaatgttcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattgttgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagcttcttgacagaacaaatagctttctttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccacagaacttataatagcaatatttgctctaatccaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53478" stop="51418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53178" g_stop="52889" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="358" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="387" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51718" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="463" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E475837" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53178" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAA</genome_strand>
        <mrna_strand>CTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCGCCATGGCCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCTTGTACGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTCTTGACAGA........................................................................................................................ACAAATAGCTTTCTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACAGAACTTATAATAGCAATATTTGCTCTAATCCAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E484628" ref_strand="+" ref_description="SGN-E484628 [cSTE-14-G19]">
      <seq>ataaaaccaaatacacaaaataagttattttccaaaaataccaaaacaaaacaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggacatattaagccattaagcaaagagatgcgccatggccatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatcttacccttgtacggaaagtaccttgtgccattgttagagatgttcttgctaatgttcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattgttgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagcttcttgacagagtaagttaaattattttttctatggtataatttgattattaaaattgtttacgagtcaatttgaattgattaataatcacctattattaatattttttgatcgttttgaattgcagacaaatagctttctttactggtccaacagttggagggcttctaatgcaacatgtggaaatgccacagaacttataaatagcatatttgctctaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53528" stop="51426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53223" g_stop="52889" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="347" r_length="332" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52193" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="560" r_length="213" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51793" g_stop="51726" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="627" r_length="67" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E484628" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53223" e_stop="52889"/>
          <exon e_start="52409" e_stop="52193"/>
          <exon e_start="51793" e_stop="51726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACA-TTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTAT-AATAGCAATATTTGCTTTAATC</genome_strand>
        <mrna_strand>CAAAATAAGTTATTTTCC-AA-AAATA-CCAAAACAAAACAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCGCCATGGCCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCTTGTACGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTCTTGACAGAGTAAGTTAAATTATTT-TTTCTATGGTATAATTTGATTATTAAAATTGTTTACGAGTCAATTTGAATTGATTA--A-T-AATCACCTATTATTAATATTTTTTGATCGTTTTGAATTGCAGACAAATAGCTTTCTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCT-AATGCAACATGTGGAAATGCCACAGAACTTATAAATAGC-ATATTTGCTCTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E443995" ref_strand="+" ref_description="SGN-E443995 [cSTA-41-C1]">
      <seq>tataaaaccaaaatacacaaaataagttattttccaaaaataccaaaacaaaaccaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggacatattaagccattaagcaaagagatgccgccctggccatggtcgtagccatggaccaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatcttacccttgtaccggaaagtaccttgtgccattgttagagatgttcttgctaatgttcaagaggtcattttgggaacctaagctttttgtgctcttcattgccatacctattgccattgttgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagcttcttgacagaacaaatagctttctttactgatccaacagttggagggcttctaaatgcaacatgtggaaatgccacagaacttataatagcaatatttgctctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53528" stop="51428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53223" g_stop="52889" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="353" r_length="336" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="421" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="450" r_length="29" r_score="0.897"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51728" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="516" r_length="66" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E443995" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53223" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATG-AGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTA-AGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAA-CTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAA</genome_strand>
        <mrna_strand>CAAAATAAGTTATTTTCCAAA-AATACCA-AAACAAAACCAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCCGCCCTGGCCATGGTCGTAGCCATGGACCAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCTTGTACCGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACCTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTCTTGACAGA........................................................................................................................ACAAATAGCTTTCTTTACTGATCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACAGAACTTATAATAGCAATATTTGCTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E323817" ref_strand="+" ref_description="SGN-E323817 [cTOC-5-P6]">
      <seq>ataaaacctaaataagttattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaatgccactgaacttataatagcaatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53530" stop="51434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53230" g_stop="52889" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="410" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="439" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51734" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="499" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E323817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53230" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTG</genome_strand>
        <mrna_strand>ATAAAACCTAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E439433" ref_strand="+" ref_description="SGN-E439433 [cSTA-12-I21]">
      <seq>ccaaaatacaccaaaataagttattttccaaaaatacaaaacaaaacaatggcttcatcatcaccagcagcagaaaccatggctcttagaaaatggacatattaagccattaagcaaagagatgcgcccatggccatggtcgtagccatggaccaacggctcacaaccgtatcgtcttcgtctcttaggaaaaagtctgatcttaccccttgtaccggaaagtacccttgtgcccattgttagagatgttcttgctaatgttcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattgttgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggaccttactccattggctgaaccgtgtcagcttcttgacagaacaaatagctttctttactggtcccacagttggagggcttctaaatgcaacatgtggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53534" stop="51462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53235" g_stop="52889" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="419" r_length="70" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="448" r_length="29" r_score="0.897"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51762" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="480" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E439433" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53235" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAA-CATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAG-ACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAA-CGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATC-TAACCCTTGTA-AGGAAAGTA-CCTTGTG-CCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGA-CTTACTCCATTGGCTGAA-CGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAAT</genome_strand>
        <mrna_strand>CCAAAAT-ACACCAAAATAAGTTATTTTCCA---A-AAATACAAAACAAAACAATGGCTTCATCATCACCAGCAGCAGAAACCATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCGCCCATGGCCATGGTCGTAGCCATGGACCAACGGCTCACAACCGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCCTTGTACCGGAAAGTACCCTTGTGCCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACCTTACTCCATTGGCTGAACCGTGTCAGCTTCTTGACAGA........................................................................................................................ACAAATAGCTTTCTTTACTGGTCCCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E285452" ref_strand="+" ref_description="SGN-E285452 [cLES-10-M17]">
      <seq>tattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggagggcttctaaatgcaacatgtggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53513" stop="51462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53213" g_stop="52889" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="393" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="422" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51793" g_stop="51762" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="454" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E285452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53213" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
          <exon e_start="51793" e_stop="51762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAGGTACTTCCCCATTTATTTAGTTTTTAATCTTTTGTTGGCTTTTTTTTAATCCACAAAACACAGAGATTTTTAATCCTTTGTTTATATAATATAGTGAAGGACCACGACTAACGTTATGAAATAAATCAATATCAGTATAAAAATTATGAATTTCCATCAAAGATATTTAATATGATATTATAATTTTTCGACGAAAAATATTGGATAGACCAGGTCTAGGTAGTTTCACTATTAAATTGAACAAACATAAAATTGGAAATTCCTTTGTTTTTTTCGAATCAATAAACAATTTAACAACAACCTCTAGCTAGTTTAATGTTACTTGACATATAAATTAGATTATTTTTTTTTTAAAAAAAAATTCTAATTATTGTTTGTTTAATTTGTTGCATTAATCAGTTGGAGGGCTTCTAAATGCAACATGTGGAAAT</genome_strand>
        <mrna_strand>TATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGGGCTTCTAAATGCAACATGTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E322628" ref_strand="+" ref_description="SGN-E322628 [cTOB-26-M5]">
      <seq>tcaatataaaaccaaaataagttattttccaaagaaaaagacaaaacaaaagaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggaaatattaagcctttaagcaaagagatgagacatgggcatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattggctgaacgtgtcagctttttgacagagcaaatagctttttttactggtccaacagttggaaggcttttctaatgcacatgtggaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53535" stop="51891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53235" g_stop="52889" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52342" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="415" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52221" g_stop="52193" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="444" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E322628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53235" e_stop="52889"/>
          <exon e_start="52409" e_stop="52342"/>
          <exon e_start="52221" e_stop="52193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAG</genome_strand>
        <mrna_strand>TCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA........................................................................................................................GCAAATAGCTTTTTTTACTGGTCCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E442284" ref_strand="+" ref_description="SGN-E442284 [cSTA-32-J3]">
      <seq>ataaaaccaaaatacacaaaataagttattttccaaaaatacaaaacaaaacaatggcttcatcatcaccagcagcagaaacatggctcttagaaaatggacatattaagccattaagcaaagagatgcgccatggccatggtcgtagccatggacgaacggctcacaacgtatcgtcttcgtctcttaggaaaaagtctgatcttacccttgtacggaaagtaccttgtgccattgttagagatgttcttgctaatgttcaagaggtcattttgggaactaagctttttgtgctcttcattgccatacctattgccattgttgctcattacaaaaactttggaagatcatgggtttttggattgagtttacttggacttactccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53501" stop="52068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53223" g_stop="52889" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="347" r_length="331" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52409" g_stop="52368" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="389" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E442284" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53223" e_stop="52889"/>
          <exon e_start="52409" e_stop="52368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGAGTAAGTTCTCTTTAATTTACATTCAATTGTGTGATTATTTCGATGGTTGCACAATTTAATATGGTATTAGAGTGGACGGGAGGTTGTTTTGAATAAAATGAAATGAATATTCATGCGTTTAGGTTAATTTTAAAACGAATCAGGTACACACGTGAGGACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTG</genome_strand>
        <mrna_strand>CAAAATAAGTTATTTTCC-AA--AAA-TACAAAACAAAACAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGACATATTAAGCCATTAAGCAAAGAGATGCGCCATGGCCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTTACCCTTGTACGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATGTTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTGTTGCTCATTACAAAAACTTTGGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E312695" ref_strand="+" ref_description="SGN-E312695 [cTOA-8-C23]">
      <seq>aaacatatctcttataaaatggaaatattaatcctttaagcaaatatattagacatgggcatggtcctatccatggactaacggctcacaacgtatcgtcttcgtatcttaagaaaaagtctgatctaacccttgtaaggaaagtaccttgtgccattgttagagatgttcttgctaatattcaagaggtcattttgtgaactaagctttttgtgctcttcattgccatacctattgccattattgctcattacaaaaactttggaagatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="53457" stop="52589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53157" g_stop="52889" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E312695" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53157" e_stop="52889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA</genome_strand>
        <mrna_strand>AAACATATCTCTTATAAAATGGAAATATTAATCCTTTAAGCAAATATATTAGACATGGGCATGGTCCTATCCATGGACTAACGGCTCACAACGTATCGTCTTCGTATCTTAAGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGTGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E371114" ref_strand="-" ref_description="SGN-E371114 [TUS-28-D13]">
      <seq>agttttttacagaggaagggattatgtgcaacccgaaattatgtttcctatttatacactgtcaaaaaaaaaggcattggaaaaatccaaatatgaacagtcgctaaagtttgtgaaacgtttcattgcgattgctgaaaaagaacttgaactttactaccgacatgtcgctttatatggtgacccaagtaaccgaagtgcttactccatccttgatgattcaaaaagcccaaaaggaaaaagaaatgcttaaataggtgaggagaactattcagcaaacaaatttaatatgttggattttgaattggaaattgacgatagttgttttgatgacaaccagtttttataatttgaatttgaaaaaacctgaataggagttttcaattcccccttagtttggaattaactacacctatgtttttatttgggtaaaatatgaagttgttaattaacaagtaggggggtatatgaccgggttgattcaggtttttcaaaaatcaaaccaaaccatttatgttgaatttttgaatttataaaccaaatcaaactcatgtttttcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="60017" stop="58203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59717" g_stop="59645" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59644" i_stop="58989" i_length="656">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58988" g_stop="58503" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="559" r_length="486" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="599"/>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E371114" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371114" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59717" e_stop="59645"/>
          <exon e_start="58988" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAGGTAAGTTTGTTAGAGCTAAATTTCTTTAATTACCAAGTAATTGCTTCTCATCATGCATTTATGCGCAAGTTCGCTCTTTCAAGTCTTACTGTGCATAGTCCTTCTACCATCAACCTCTAGTCATTCCCACCAGCTTTCACTGTAATTCTCTTTCGATTGATGCGTGAATCCTTCATTTTCTCGATCTTCTTATGCGAAACAGGTATGCAATAGGTGTGGGTACTTTTGTGGATGATTTAAAATATTTCTAAAAATCATCAAAGATTTCACGTACCCGTAACATATGTATATCCTATACATACCTGTAGCTGAATCCATGTTAAACAGCTTATTGTTGACCTGGCTTATAGATGCAGCTGGGTTAATATATCAGGGTAGATCATCTGAAATCCACCTCAACAGCCAAACTCCAACCCTTTTGTGACTTGTATTATTCACTGTACATCACAAAAGAACCATACCCTTCATTGCACCACAGATACCCCTTACTGTTTGTAATTTCATCCTCACATGTTTACTGCTCCTTTGGAATCAGTTCACTATATTTATGGCATAAAGATTTTACTTTTAATATTTTGACTCTGTCTCATTTACCTGTATCTTTGTTTTATCAAATTTGTTTCAATCATGATAAGAATTACTGGTCAATTCTCCAGGCATTGGAAAAATCCAAATATGAGCAGTCGCTAGAGTCTGTGAGACGTTTCATTGCGATTGCTGAAAAGGAACTTGAACTCTACTACCGACATGTCGCTCTATATGGTGACCCAAGTAACCGAAGTGCTTACTCCATCCTTGATGATTCAAGAAGCACAAGAGGAAAACGAAATGCTGAGATAGGTGAGGAGAACTATTCAGCAAGCAAATCTAATATGTTGGATCTTGAATTGGAAATTGACGATAGTTGTTCTGATGACAACCAGTCTTTATAATTTGAATTTGAAAATACCTGAATAGGAGTTTTCAATTCCACCTTAGTTTGGAATTAACTACACCTATGTTTTTATCTGCGTAATATATGAAGTTGTTAATTAGCAAGTAGGGGTGTATATGACCGGGTTGATTCAGGTTTTTCAAATATCAAACCAAACCATTTATGTCGAATTTTTGAATTTATAAACCAAATCAAACTCATGTTTTTC</genome_strand>
        <mrna_strand>AGTTTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTTTCCTATTTATACACTGTCAAAAAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGAAAAATCCAAATATGAACAGTCGCTAAAGTTTGTGAAACGTTTCATTGCGATTGCTGAAAAAGAACTTGAACTTTACTACCGACATGTCGCTTTATATGGTGACCCAAGTAACCGAAGTGCTTACTCCATCCTTGATGATTCAAAAAGCCCAAAAGGAAAAAGAAATGCTTAAATAGGTGAGGAGAACTATTCAGCAAACAAATTTAATATGTTGGATTTTGAATTGGAAATTGACGATAGTTGTTTTGATGACAACCAGTTTTTATAATTTGAATTTGAAAAAACCTGAATAGGAGTTTTCAATTCCCCCTTAGTTTGGAATTAACTACACCTATGTTTTTATTTGGGTAAAATATGAAGTTGTTAATTAACAAGTAGGGGGGTATATGACCGGGTTGATTCAGGTTTTTCAAAAATCAAACCAAACCATTTATGTTGAATTTTTGAATTTATAAACCAAATCAAACTCATGTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E371193" ref_strand="-" ref_description="SGN-E371193 [TUS-28-F13]">
      <seq>tttttacaaaggaaaggattatgtgcaacccgaaattatgtttcctattgataccctgtcaaaaaaaaaggcattggaaaaatccaaatatgagcagtcgctaaagtttgttaaacgtttcattgcgattgctgaaaaggaacttgaactttactaccgacatgtcgctttatatggtgacccaagtaaccgaagtgcttactccatccttgatgattcaaaaagcccaaaaggaaaacgaaatgctgaaataggtgaggaaaactattcagcaagcaaatttaatatgttggattttgaattggaaattgacgatagttgttttgatgacaaccagtttttataatttgaatttgaaaaaacctgaataggagttttcaattcccccttagtttggaattaactacacctatgtttttatttgggtaaaatatgaagttgttaattaacaagtaggggggtatatgaccgggttgattcaggtttttcaaatatcaaaccaaaccatttatgttgaatttttgaatttataaaccaaatcaaactcatgtttttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="60014" stop="58201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59714" g_stop="59645" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59644" i_stop="58989" i_length="656">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58988" g_stop="58503" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="556" r_length="486" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="596"/>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E371193" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371193" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59714" e_stop="59645"/>
          <exon e_start="58988" e_stop="58503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAGGTAAGTTTGTTAGAGCTAAATTTCTTTAATTACCAAGTAATTGCTTCTCATCATGCATTTATGCGCAAGTTCGCTCTTTCAAGTCTTACTGTGCATAGTCCTTCTACCATCAACCTCTAGTCATTCCCACCAGCTTTCACTGTAATTCTCTTTCGATTGATGCGTGAATCCTTCATTTTCTCGATCTTCTTATGCGAAACAGGTATGCAATAGGTGTGGGTACTTTTGTGGATGATTTAAAATATTTCTAAAAATCATCAAAGATTTCACGTACCCGTAACATATGTATATCCTATACATACCTGTAGCTGAATCCATGTTAAACAGCTTATTGTTGACCTGGCTTATAGATGCAGCTGGGTTAATATATCAGGGTAGATCATCTGAAATCCACCTCAACAGCCAAACTCCAACCCTTTTGTGACTTGTATTATTCACTGTACATCACAAAAGAACCATACCCTTCATTGCACCACAGATACCCCTTACTGTTTGTAATTTCATCCTCACATGTTTACTGCTCCTTTGGAATCAGTTCACTATATTTATGGCATAAAGATTTTACTTTTAATATTTTGACTCTGTCTCATTTACCTGTATCTTTGTTTTATCAAATTTGTTTCAATCATGATAAGAATTACTGGTCAATTCTCCAGGCATTGGAAAAATCCAAATATGAGCAGTCGCTAGAGTCTGTGAGACGTTTCATTGCGATTGCTGAAAAGGAACTTGAACTCTACTACCGACATGTCGCTCTATATGGTGACCCAAGTAACCGAAGTGCTTACTCCATCCTTGATGATTCAAGAAGCACAAGAGGAAAACGAAATGCTGAGATAGGTGAGGAGAACTATTCAGCAAGCAAATCTAATATGTTGGATCTTGAATTGGAAATTGACGATAGTTGTTCTGATGACAACCAGTCTTTATAATTTGAATTTGAAAATACCTGAATAGGAGTTTTCAATTCCACCTTAGTTTGGAATTAACTACACCTATGTTTTTATCTGCGTAATATATGAAGTTGTTAATTAGCAAGTAGGGGTGTATATGACCGGGTTGATTCAGGTTTTTCAAATATCAAACCAAACCATTTATGTCGAATTTTTGAATTTATAAACCAAATCAAACTCATGTTTTTC</genome_strand>
        <mrna_strand>TTTTTACAAAGGAAAGGATTATGTGCAACCCGAAATTATGTTTCCTATTGATACCCTGTCAAAAAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGAAAAATCCAAATATGAGCAGTCGCTAAAGTTTGTTAAACGTTTCATTGCGATTGCTGAAAAGGAACTTGAACTTTACTACCGACATGTCGCTTTATATGGTGACCCAAGTAACCGAAGTGCTTACTCCATCCTTGATGATTCAAAAAGCCCAAAAGGAAAACGAAATGCTGAAATAGGTGAGGAAAACTATTCAGCAAGCAAATTTAATATGTTGGATTTTGAATTGGAAATTGACGATAGTTGTTTTGATGACAACCAGTTTTTATAATTTGAATTTGAAAAAACCTGAATAGGAGTTTTCAATTCCCCCTTAGTTTGGAATTAACTACACCTATGTTTTTATTTGGGTAAAATATGAAGTTGTTAATTAACAAGTAGGGGGGTATATGACCGGGTTGATTCAGGTTTTTCAAATATCAAACCAAACCATTTATGTTGAATTTTTGAATTTATAAACCAAATCAAACTCATGTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E328522" ref_strand="+" ref_description="SGN-E328522 [cTOC-23-C8]">
      <seq>tttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaggctgaagctgcaaaggaagagagagaagaagaagagaaatgctgcaaataagagggatccaagaaggcttggtctaaaggggaagaagaagaagcagaagtttgacactgctgaagaaagaattaagcagaagatagaaaatgcaaaagtcaaagaagcgctgttgattgagagactaaagcgatatgaggttaccaaagttcaaggtcctgaggttaagccacacttcctcactggcgaagaacgattctatataaaaaagatggggcaaaaaaggtctaattatgtgccaattggcagaaggggagtctttggtggtgttattcttaatatgcatttacattggaaaaaacatgaaacagtcaaagtcatatgcaaacctggtcaagtccaagaatatgccgatgaaattgcaagactgagtggcggcatcccaattcagataattgcagatgatacaatagttttttacagaggaagggattatgtgcaacccgaaattatgtctcctattgatacactgtcaaagaagaaggcattggaaaaatccaaatatgagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="61488" stop="58661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61188" g_stop="60991" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60990" i_stop="60038" i_length="953">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60037" g_stop="59645" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="591" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59644" i_stop="58989" i_length="656">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58988" g_stop="58961" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="619" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E328522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61188" e_stop="60991"/>
          <exon e_start="60037" e_stop="59645"/>
          <exon e_start="58988" e_stop="58961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAATGTGAGCTAATGATTTTCCTTTTTTACTTAAAAGCCAATGATTGATTTTGCCATTAGTTCTCCTGCTGAGGATTTATATCACCCACCCCAACTTGTTTGGAATTGAGATGTAATTCTTGTCTGTTTAGCTATTACCACTACTACTATGGCTCAATGCCGAACTATTTGGTCTCGACTGTATGTCTTCTCGAATCCATCCCATTCCATTTGGACCAGTATGATAGTTAATCTTTATATTAGCTTAATAATCTGTAATAGCATAAAGAATGAACTGAATTGTAGAACTTGGGCAGGGTAATGATTTATAAGAATTTTGGAAATGAGCTTCAACCTATTTTCTTCAATTTGGTTGACAAAAAAATAAATTAGAAGGGGAAGTTGGAAGGAAGATATAGAGGAAAATGACAAGTAGATCTATACATGTGTTCTTTGTTGGTATTGTTAAACTTCTTGAGTAATCTTTTATATTACTTATTCTCATTTGATACTCATATTAGAGCGAGGTTGTAGAAGCATTATTGAACCTGGATTTGTCTCTTTCCCTTATCTTCTTGGCTATGTTTTTTAATAGTAATTGCAAAGATCTATTTTCTCTATGATTTCAGCGTGGAAATACTTAGTGAGTACAGTTATTTTCTTGAAACTGGAGAAAGAAAAGAATCTCTTTACTTTTCAGTTACTTTTAACTTTTGTGTCATCTACTGAAAACCAAGTTACAGCAAGTGTGCCTGTTTCGTGGTTGCTACCTCACTGAAGCATGGAAGACATTTCGTAGTTAAGTTTTATATCTATCTTACCTTTTTCCTGGTTTAGTATGTGAAGAATTGTGTGGTCACCTTATGTTTGTGTTTATTGAAGCTAAGATTTGTTTTATTCCCATTTCCATATGACTTATATACGAAATAATGGAGTTTTTTATTTTAACAAAAGCTGACATGTTTTGGCTTGGGTCAGGCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATGGGGCAAAAAAGGTCTAATTATGTGCCAATTGGCAGAAGGGGAGTCTTTGGTGGTGTTATTCTTAATATGCATTTACATTGGAAAAAACATGAAACAGTCAAAGTCATATGCAAACCTGGTCAAGTCCAAGAATATGCCGATGAAATTGCAAGACTGAGTGGCGGCATCCCAATTCAGATAATTGCAGATGATACAATAGTTTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAGGTAAGTTTGTTAGAGCTAAATTTCTTTAATTACCAAGTAATTGCTTCTCATCATGCATTTATGCGCAAGTTCGCTCTTTCAAGTCTTACTGTGCATAGTCCTTCTACCATCAACCTCTAGTCATTCCCACCAGCTTTCACTGTAATTCTCTTTCGATTGATGCGTGAATCCTTCATTTTCTCGATCTTCTTATGCGAAACAGGTATGCAATAGGTGTGGGTACTTTTGTGGATGATTTAAAATATTTCTAAAAATCATCAAAGATTTCACGTACCCGTAACATATGTATATCCTATACATACCTGTAGCTGAATCCATGTTAAACAGCTTATTGTTGACCTGGCTTATAGATGCAGCTGGGTTAATATATCAGGGTAGATCATCTGAAATCCACCTCAACAGCCAAACTCCAACCCTTTTGTGACTTGTATTATTCACTGTACATCACAAAAGAACCATACCCTTCATTGCACCACAGATACCCCTTACTGTTTGTAATTTCATCCTCACATGTTTACTGCTCCTTTGGAATCAGTTCACTATATTTATGGCATAAAGATTTTACTTTTAATATTTTGACTCTGTCTCATTTACCTGTATCTTTGTTTTATCAAATTTGTTTCAATCATGATAAGAATTACTGGTCAATTCTCCAGGCATTGGAAAAATCCAAATATGAGCAGT</genome_strand>
        <mrna_strand>TTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATGGGGCAAAAAAGGTCTAATTATGTGCCAATTGGCAGAAGGGGAGTCTTTGGTGGTGTTATTCTTAATATGCATTTACATTGGAAAAAACATGAAACAGTCAAAGTCATATGCAAACCTGGTCAAGTCCAAGAATATGCCGATGAAATTGCAAGACTGAGTGGCGGCATCCCAATTCAGATAATTGCAGATGATACAATAGTTTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGAAAAATCCAAATATGAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E333099" ref_strand="+" ref_description="SGN-E333099 [cTOD-19-B17]">
      <seq>ataactccggtgagttttctctttctctctccatcaatcaccaccataactccgaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaaatttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaagctgaagctgcaaaggaagagagagaagaagaagagaaatgctgcaaataagagggatccaagaaggcttggtctaaaggggaagaagaagaagcagaagtttgacactgctgaagaaagaattaagcagaagatagaaaatgcaaaagtcaaagaagcgctgttgattgagagactaaagcgatatgaggttaccaaagttcaaggtcctgagggtaagccacacttcctcactggcgaaagacgattctatataaaaaagatggggcaaaaaaggtctaattatgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="63236" stop="59589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62936" g_stop="62883" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62882" i_stop="61813" i_length="1070">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61812" g_stop="61723" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="144" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="307" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61336" g_stop="60991" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="653" r_length="346" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60990" i_stop="60038" i_length="953">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60037" g_stop="59889" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="802" r_length="149" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E333099" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62936" e_stop="62883"/>
          <exon e_start="61812" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="60991"/>
          <exon e_start="60037" e_stop="59889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAATGTTTCTATTAGGAACTATAAAATTTGGACTAAAGTTATTTTAAGTTAAAAATTCTAGAGGAGAAAAACATAGAAAGAACAAAGGGGATTTCTTTTTTAACTCACTTGACAACTTTAATACGGTAGGCTTGGTTCCTACGGGTACTAACCGAACATGGAAATGTTAATATTTCTTCCTATGGGTACTAACCGAACATGGAAATGTTAATATTTCTGCAGAAGTACCTTACAAACATTCGGAGTAACCATTAACTTTCCTCCAATATTGTTATCCTATAAGAACTCAACTTCTAAACCGTCAGAAGAAGCTTGGAGTGCTCTTATGGACGAATGTACCTCATGATGGTTCTTTGAACTTTCATACTTGAACTTACCAAAATATAGTGTGAATGACCTTTTCCCCATAATTTGTGTTAAATATAACGAACATAGATTGTTAAGCATTTTACGGAGAGGAGAAGTGTTTAACTTTTGGCAAACTTATAGCACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAATGTGAGCTAATGATTTTCCTTTTTTACTTAAAAGCCAATGATTGATTTTGCCATTAGTTCTCCTGCTGAGGATTTATATCACCCACCCCAACTTGTTTGGAATTGAGATGTAATTCTTGTCTGTTTAGCTATTACCACTACTACTATGGCTCAATGCCGAACTATTTGGTCTCGACTGTATGTCTTCTCGAATCCATCCCATTCCATTTGGACCAGTATGATAGTTAATCTTTATATTAGCTTAATAATCTGTAATAGCATAAAGAATGAACTGAATTGTAGAACTTGGGCAGGGTAATGATTTATAAGAATTTTGGAAATGAGCTTCAACCTATTTTCTTCAATTTGGTTGACAAAAAAATAAATTAGAAGGGGAAGTTGGAAGGAAGATATAGAGGAAAATGACAAGTAGATCTATACATGTGTTCTTTGTTGGTATTGTTAAACTTCTTGAGTAATCTTTTATATTACTTATTCTCATTTGATACTCATATTAGAGCGAGGTTGTAGAAGCATTATTGAACCTGGATTTGTCTCTTTCCCTTATCTTCTTGGCTATGTTTTTTAATAGTAATTGCAAAGATCTATTTTCTCTATGATTTCAGCGTGGAAATACTTAGTGAGTACAGTTATTTTCTTGAAACTGGAGAAAGAAAAGAATCTCTTTACTTTTCAGTTACTTTTAACTTTTGTGTCATCTACTGAAAACCAAGTTACAGCAAGTGTGCCTGTTTCGTGGTTGCTACCTCACTGAAGCATGGAAGACATTTCGTAGTTAAGTTTTATATCTATCTTACCTTTTTCCTGGTTTAGTATGTGAAGAATTGTGTGGTCACCTTATGTTTGTGTTTATTGAAGCTAAGATTTGTTTTATTCCCATTTCCATATGACTTATATACGAAATAATGGAGTTTTTTATTTTAACAAAAGCTGACATGTTTTGGCTTGGGTCAGGCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATGGGGCAAAAAAGGTCTAATTATGTGCC</genome_strand>
        <mrna_strand>ATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAAATTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAAGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGGTAAGCCACACTTCCTCACTGGCGAAAGACGATTCTATATAAAAAAGATGGGGCAAAAAAGGTCTAATTATGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E252512" ref_strand="+" ref_description="SGN-E252512 [cLEG-20-O10]">
      <seq>caccaccataactccgtgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaggctgaagctgcaaaggaagagagagaagaagaagagaaatgctgcaaataagagggatccaagaaggcttggtctaaaggggaagaagaagaagcagaagtttgacactgctgaagaaagaattaagcagaagatagaaaatgcaaaagtcaaagaagcgctgttgattgagagactaaagcgatatgaggttaccaaagttcaaagtcctgaggttaagccacacttcctcactggcgaagaacgattctatataaaaaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="61918" stop="59615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="179" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61336" g_stop="60991" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="525" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60990" i_stop="60038" i_length="953">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60037" g_stop="59915" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="648" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E252512" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="60991"/>
          <exon e_start="60037" e_stop="59915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAATGTGAGCTAATGATTTTCCTTTTTTACTTAAAAGCCAATGATTGATTTTGCCATTAGTTCTCCTGCTGAGGATTTATATCACCCACCCCAACTTGTTTGGAATTGAGATGTAATTCTTGTCTGTTTAGCTATTACCACTACTACTATGGCTCAATGCCGAACTATTTGGTCTCGACTGTATGTCTTCTCGAATCCATCCCATTCCATTTGGACCAGTATGATAGTTAATCTTTATATTAGCTTAATAATCTGTAATAGCATAAAGAATGAACTGAATTGTAGAACTTGGGCAGGGTAATGATTTATAAGAATTTTGGAAATGAGCTTCAACCTATTTTCTTCAATTTGGTTGACAAAAAAATAAATTAGAAGGGGAAGTTGGAAGGAAGATATAGAGGAAAATGACAAGTAGATCTATACATGTGTTCTTTGTTGGTATTGTTAAACTTCTTGAGTAATCTTTTATATTACTTATTCTCATTTGATACTCATATTAGAGCGAGGTTGTAGAAGCATTATTGAACCTGGATTTGTCTCTTTCCCTTATCTTCTTGGCTATGTTTTTTAATAGTAATTGCAAAGATCTATTTTCTCTATGATTTCAGCGTGGAAATACTTAGTGAGTACAGTTATTTTCTTGAAACTGGAGAAAGAAAAGAATCTCTTTACTTTTCAGTTACTTTTAACTTTTGTGTCATCTACTGAAAACCAAGTTACAGCAAGTGTGCCTGTTTCGTGGTTGCTACCTCACTGAAGCATGGAAGACATTTCGTAGTTAAGTTTTATATCTATCTTACCTTTTTCCTGGTTTAGTATGTGAAGAATTGTGTGGTCACCTTATGTTTGTGTTTATTGAAGCTAAGATTTGTTTTATTCCCATTTCCATATGACTTATATACGAAATAATGGAGTTTTTTATTTTAACAAAAGCTGACATGTTTTGGCTTGGGTCAGGCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATG</genome_strand>
        <mrna_strand>TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAAGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E332863" ref_strand="+" ref_description="SGN-E332863 [cTOD-19-E17]">
      <seq>ataactccggtgagttttctctttctctctccatcaatcaccaccataactccgaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaggctgaagctgcaaaggaagagagagaagaagaagagaaatgctgcaaataagagggatccaagaaggcttggtctaaaggggaagaagaagaagcagaagtttgacactgctgaaagaagaattaagcagaagatagaaaatgcaaaagtcaaagaagcgctgttgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="63236" stop="59710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62936" g_stop="62883" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62882" i_stop="61813" i_length="1070">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61812" g_stop="61723" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="144" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="307" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61336" g_stop="60991" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="653" r_length="346" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60990" i_stop="60038" i_length="953">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60037" g_stop="60010" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="681" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E332863" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62936" e_stop="62883"/>
          <exon e_start="61812" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="60991"/>
          <exon e_start="60037" e_stop="60010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAATGTTTCTATTAGGAACTATAAAATTTGGACTAAAGTTATTTTAAGTTAAAAATTCTAGAGGAGAAAAACATAGAAAGAACAAAGGGGATTTCTTTTTTAACTCACTTGACAACTTTAATACGGTAGGCTTGGTTCCTACGGGTACTAACCGAACATGGAAATGTTAATATTTCTTCCTATGGGTACTAACCGAACATGGAAATGTTAATATTTCTGCAGAAGTACCTTACAAACATTCGGAGTAACCATTAACTTTCCTCCAATATTGTTATCCTATAAGAACTCAACTTCTAAACCGTCAGAAGAAGCTTGGAGTGCTCTTATGGACGAATGTACCTCATGATGGTTCTTTGAACTTTCATACTTGAACTTACCAAAATATAGTGTGAATGACCTTTTCCCCATAATTTGTGTTAAATATAACGAACATAGATTGTTAAGCATTTTACGGAGAGGAGAAGTGTTTAACTTTTGGCAAACTTATAGCACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAATGTGAGCTAATGATTTTCCTTTTTTACTTAAAAGCCAATGATTGATTTTGCCATTAGTTCTCCTGCTGAGGATTTATATCACCCACCCCAACTTGTTTGGAATTGAGATGTAATTCTTGTCTGTTTAGCTATTACCACTACTACTATGGCTCAATGCCGAACTATTTGGTCTCGACTGTATGTCTTCTCGAATCCATCCCATTCCATTTGGACCAGTATGATAGTTAATCTTTATATTAGCTTAATAATCTGTAATAGCATAAAGAATGAACTGAATTGTAGAACTTGGGCAGGGTAATGATTTATAAGAATTTTGGAAATGAGCTTCAACCTATTTTCTTCAATTTGGTTGACAAAAAAATAAATTAGAAGGGGAAGTTGGAAGGAAGATATAGAGGAAAATGACAAGTAGATCTATACATGTGTTCTTTGTTGGTATTGTTAAACTTCTTGAGTAATCTTTTATATTACTTATTCTCATTTGATACTCATATTAGAGCGAGGTTGTAGAAGCATTATTGAACCTGGATTTGTCTCTTTCCCTTATCTTCTTGGCTATGTTTTTTAATAGTAATTGCAAAGATCTATTTTCTCTATGATTTCAGCGTGGAAATACTTAGTGAGTACAGTTATTTTCTTGAAACTGGAGAAAGAAAAGAATCTCTTTACTTTTCAGTTACTTTTAACTTTTGTGTCATCTACTGAAAACCAAGTTACAGCAAGTGTGCCTGTTTCGTGGTTGCTACCTCACTGAAGCATGGAAGACATTTCGTAGTTAAGTTTTATATCTATCTTACCTTTTTCCTGGTTTAGTATGTGAAGAATTGTGTGGTCACCTTATGTTTGTGTTTATTGAAGCTAAGATTTGTTTTATTCCCATTTCCATATGACTTATATACGAAATAATGGAGTTTTTTATTTTAACAAAAGCTGACATGTTTTGGCTTGGGTCAGGCAAAAGTCAAAGAAGCGCTGTTGATTG</genome_strand>
        <mrna_strand>ATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAAGAAGAATTAAGCAGAAGATAGAAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTCAAAGAAGCGCTGTTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E328457" ref_strand="+" ref_description="SGN-E328457 [cTOC-21-J4]">
      <seq>cctgagactccatcgatcaccaccataactccgaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaggctgaagctgcnaaggaagagagagaagaagaagagaaatgctgcaaataagagggatccaagaaggcttggtctaaaggggaagaagaagaagcagaagtttgacactgctgaaagaagaattaagcagaagatagaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="63260" stop="60690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62960" g_stop="62928" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62927" i_stop="61813" i_length="1115">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61812" g_stop="61723" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="123" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="286" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61336" g_stop="60991" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="632" r_length="346" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E328457" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62960" e_stop="62928"/>
          <exon e_start="61812" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="60991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGACTCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAATGTTTCTATTAGGAACTATAAAATTTGGACTAAAGTTATTTTAAGTTAAAAATTCTAGAGGAGAAAAACATAGAAAGAACAAAGGGGATTTCTTTTTTAACTCACTTGACAACTTTAATACGGTAGGCTTGGTTCCTACGGGTACTAACCGAACATGGAAATGTTAATATTTCTTCCTATGGGTACTAACCGAACATGGAAATGTTAATATTTCTGCAGAAGTACCTTACAAACATTCGGAGTAACCATTAACTTTCCTCCAATATTGTTATCCTATAAGAACTCAACTTCTAAACCGTCAGAAGAAGCTTGGAGTGCTCTTATGGACGAATGTACCTCATGATGGTTCTTTGAACTTTCATACTTGAACTTACCAAAATATAGTGTGAATGACCTTTTCCCCATAATTTGTGTTAAATATAACGAACATAGATTGTTAAGCATTTTACGGAGAGGAGAAGTGTTTAACTTTTGGCAAACTTATAGCACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT</genome_strand>
        <mrna_strand>CCTGAGACTCCATCGATCACCACCATAACTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCNAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAAGAAGAATTAAGCAGAAGATAGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E253817" ref_strand="+" ref_description="SGN-E253817 [cLEG-28-K14]">
      <seq>caccaccataactccgtgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaggctgaagctgcaaaggaagagagagaagaagaagagaaatgctgcaaataagagggatccaagaaggcttggtctaaaggggaagaagaagaagcagaagtttgacactgctgaagaaagaattaagcagaagatagaaaatgcaaaagtcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="61918" stop="60690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="179" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61336" g_stop="60991" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="525" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E253817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="60991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT</genome_strand>
        <mrna_strand>TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E266010" ref_strand="+" ref_description="SGN-E266010 [cLEI-6-F20]">
      <seq>gctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttctgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaggctgaagctgcaaatgaagagagagaataataagagaaatgctgcaaataagagggatccaagaaggcttggtctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="61873" stop="60755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61573" g_stop="61451" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61336" g_stop="61055" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="406" r_length="282" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E266010" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61573" e_stop="61451"/>
          <exon e_start="61336" e_stop="61055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTC-GAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAA</genome_strand>
        <mrna_strand>GCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCTGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAATGAAGAGAGAGAATAATAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E297107" ref_strand="+" ref_description="SGN-E297107 [cLEW-2-M9]">
      <seq>acaactgccaccaccatcgcgcctgagactccatcgatcaccaccataactccggtgagttttctctttctctctccatcaatcaccaccataactccgaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaggctgaagctgcnaaggaagagagagaagaagaagagaaatgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="63281" stop="60787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62981" g_stop="62883" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62882" i_stop="61813" i_length="1070">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61812" g_stop="61723" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="189" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="352" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61336" g_stop="61087" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="602" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E297107" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62981" e_stop="62883"/>
          <exon e_start="61812" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="61087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTGCCACCACCATCGCGCCTGAGACTCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAATGTTTCTATTAGGAACTATAAAATTTGGACTAAAGTTATTTTAAGTTAAAAATTCTAGAGGAGAAAAACATAGAAAGAACAAAGGGGATTTCTTTTTTAACTCACTTGACAACTTTAATACGGTAGGCTTGGTTCCTACGGGTACTAACCGAACATGGAAATGTTAATATTTCTTCCTATGGGTACTAACCGAACATGGAAATGTTAATATTTCTGCAGAAGTACCTTACAAACATTCGGAGTAACCATTAACTTTCCTCCAATATTGTTATCCTATAAGAACTCAACTTCTAAACCGTCAGAAGAAGCTTGGAGTGCTCTTATGGACGAATGTACCTCATGATGGTTCTTTGAACTTTCATACTTGAACTTACCAAAATATAGTGTGAATGACCTTTTCCCCATAATTTGTGTTAAATATAACGAACATAGATTGTTAAGCATTTTACGGAGAGGAGAAGTGTTTAACTTTTGGCAAACTTATAGCACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCA</genome_strand>
        <mrna_strand>ACAACTGCCACCACCATCGCGCCTGAGACTCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCNAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E259694" ref_strand="+" ref_description="SGN-E259694 [cLEG-42-B9]">
      <seq>accaccataactccggtgagttttctctttctctctccatcaatcaccaccataactccgaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaggctgaagctgcaaaggaagagagagaagaagaagagaaatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="63242" stop="60788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62942" g_stop="62883" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62882" i_stop="61813" i_length="1070">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61812" g_stop="61723" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="150" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="313" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61336" g_stop="61088" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="562" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E259694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62942" e_stop="62883"/>
          <exon e_start="61812" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="61088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAATGTTTCTATTAGGAACTATAAAATTTGGACTAAAGTTATTTTAAGTTAAAAATTCTAGAGGAGAAAAACATAGAAAGAACAAAGGGGATTTCTTTTTTAACTCACTTGACAACTTTAATACGGTAGGCTTGGTTCCTACGGGTACTAACCGAACATGGAAATGTTAATATTTCTTCCTATGGGTACTAACCGAACATGGAAATGTTAATATTTCTGCAGAAGTACCTTACAAACATTCGGAGTAACCATTAACTTTCCTCCAATATTGTTATCCTATAAGAACTCAACTTCTAAACCGTCAGAAGAAGCTTGGAGTGCTCTTATGGACGAATGTACCTCATGATGGTTCTTTGAACTTTCATACTTGAACTTACCAAAATATAGTGTGAATGACCTTTTCCCCATAATTTGTGTTAAATATAACGAACATAGATTGTTAAGCATTTTACGGAGAGGAGAAGTGTTTAACTTTTGGCAAACTTATAGCACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGC</genome_strand>
        <mrna_strand>ACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E371194" ref_strand="+" ref_description="SGN-E371194 [TUS-28-F13]">
      <seq>accaaaattgttcagtgcataggtactattttgcacctaccctcgagcataagaaatttttttttattttcattttctcaagaactgcagatgctaaatttggcctgtttgaacatctttttaacaatctttccttaggttatacttatttctcttcaacggattagtagttttttcttctatatgctagaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaagaagaggctgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="62302" stop="60823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62002" g_stop="61723" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="443" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61336" g_stop="61123" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="657" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E371194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62002" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="61123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTG</genome_strand>
        <mrna_strand>ACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E371115" ref_strand="+" ref_description="SGN-E371115 [TUS-28-D13]">
      <seq>accaaaattgttcagtgcataggtactattttgcacctaccctcgagcataagaaatttttttttattttcattttctcaagaactgcagatgctaaatttggcctgtttgaacatctttttaacaatctttccttaggttatacttatttctcttcaacggattagtagttttttcttctatatgctagaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagcaccaaagaaagaaaaatggaagacaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="62302" stop="60837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62002" g_stop="61723" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="443" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61336" g_stop="61137" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="643" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E371115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62002" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="61137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGA</genome_strand>
        <mrna_strand>ACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E220413" ref_strand="-" ref_description="SGN-E220413 [cLEL-12-P21]">
      <seq>ggcaccagtcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagcttcagacacatgaagtggaagcaccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="61896" stop="60850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61604" g_stop="61451" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61336" g_stop="61146" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="345" r_length="191" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E220413" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220413" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61604" e_stop="61451"/>
          <exon e_start="61336" e_stop="61146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGA</genome_strand>
        <mrna_strand>GGCACCAGTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGCTTCAGACACATGAAGTGGAAGCACCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E220222" ref_strand="-" ref_description="SGN-E220222 [cLEL-12-P21]">
      <seq>gtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaccaaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaacccaagtttgagacacatgaagtggaagccccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="61890" stop="60850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61590" g_stop="61451" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61336" g_stop="61146" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="332" r_length="191" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E220222" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220222" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61590" e_stop="61451"/>
          <exon e_start="61336" e_stop="61146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAAC-AACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGA</genome_strand>
        <mrna_strand>GTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACACCAAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCCCCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E254344" ref_strand="+" ref_description="SGN-E254344 [cLEG-27-A23]">
      <seq>ccccgggctgcagggatcaccaccataactccggtgagttttctctttctctctccatcaatcaccaccataactccgaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttgttataacaaaagatgggaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="63260" stop="60892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62960" g_stop="62883" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62882" i_stop="61813" i_length="1070">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61812" g_stop="61723" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="168" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="331" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61336" g_stop="61192" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="476" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E254344" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62960" e_stop="62883"/>
          <exon e_start="61812" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="61192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGACTCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAATGTTTCTATTAGGAACTATAAAATTTGGACTAAAGTTATTTTAAGTTAAAAATTCTAGAGGAGAAAAACATAGAAAGAACAAAGGGGATTTCTTTTTTAACTCACTTGACAACTTTAATACGGTAGGCTTGGTTCCTACGGGTACTAACCGAACATGGAAATGTTAATATTTCTTCCTATGGGTACTAACCGAACATGGAAATGTTAATATTTCTGCAGAAGTACCTTACAAACATTCGGAGTAACCATTAACTTTCCTCCAATATTGTTATCCTATAAGAACTCAACTTCTAAACCGTCAGAAGAAGCTTGGAGTGCTCTTATGGACGAATGTACCTCATGATGGTTCTTTGAACTTTCATACTTGAACTTACCAAAATATAGTGTGAATGACCTTTTCCCCATAATTTGTGTTAAATATAACGAACATAGATTGTTAAGCATTTTACGGAGAGGAGAAGTGTTTAACTTTTGGCAAACTTATAGCACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCC</genome_strand>
        <mrna_strand>CCCCGGGCTGCAGGGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E305225" ref_strand="+" ref_description="SGN-E305225 [cLEX-15-K13]">
      <seq>tgagactccatcgatcaccaccataactccgaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcactcgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtgaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="63258" stop="60915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62958" g_stop="62928" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62927" i_stop="61813" i_length="1115">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61812" g_stop="61723" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="121" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="284" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61336" g_stop="61215" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="406" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E305225" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62958" e_stop="62928"/>
          <exon e_start="61812" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="61215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACTCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAATGTTTCTATTAGGAACTATAAAATTTGGACTAAAGTTATTTTAAGTTAAAAATTCTAGAGGAGAAAAACATAGAAAGAACAAAGGGGATTTCTTTTTTAACTCACTTGACAACTTTAATACGGTAGGCTTGGTTCCTACGGGTACTAACCGAACATGGAAATGTTAATATTTCTTCCTATGGGTACTAACCGAACATGGAAATGTTAATATTTCTGCAGAAGTACCTTACAAACATTCGGAGTAACCATTAACTTTCCTCCAATATTGTTATCCTATAAGAACTCAACTTCTAAACCGTCAGAAGAAGCTTGGAGTGCTCTTATGGACGAATGTACCTCATGATGGTTCTTTGAACTTTCATACTTGAACTTACCAAAATATAGTGTGAATGACCTTTTCCCCATAATTTGTGTTAAATATAACGAACATAGATTGTTAAGCATTTTACGGAGAGGAGAAGTGTTTAACTTTTGGCAAACTTATAGCACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTG</genome_strand>
        <mrna_strand>TGAGACTCCATCGATCACCACCATAACTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTCGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E299758" ref_strand="+" ref_description="SGN-E299758 [cLEW-1-L24]">
      <seq>acaactgccaccaccatcgcgcctgagactccatcgatcaccaccataactccggtgagttttctctttctctctccatcaatcaccaccataactccgaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggacttgaggaactttagtcatggaagtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="63281" stop="60921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62981" g_stop="62883" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62882" i_stop="61813" i_length="1070">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61812" g_stop="61723" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="189" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="352" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61336" g_stop="61221" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="468" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E299758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62981" e_stop="62883"/>
          <exon e_start="61812" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="61221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTGCCACCACCATCGCGCCTGAGACTCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAATGTTTCTATTAGGAACTATAAAATTTGGACTAAAGTTATTTTAAGTTAAAAATTCTAGAGGAGAAAAACATAGAAAGAACAAAGGGGATTTCTTTTTTAACTCACTTGACAACTTTAATACGGTAGGCTTGGTTCCTACGGGTACTAACCGAACATGGAAATGTTAATATTTCTTCCTATGGGTACTAACCGAACATGGAAATGTTAATATTTCTGCAGAAGTACCTTACAAACATTCGGAGTAACCATTAACTTTCCTCCAATATTGTTATCCTATAAGAACTCAACTTCTAAACCGTCAGAAGAAGCTTGGAGTGCTCTTATGGACGAATGTACCTCATGATGGTTCTTTGAACTTTCATACTTGAACTTACCAAAATATAGTGTGAATGACCTTTTCCCCATAATTTGTGTTAAATATAACGAACATAGATTGTTAAGCATTTTACGGAGAGGAGAAGTGTTTAACTTTTGGCAAACTTATAGCACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGA</genome_strand>
        <mrna_strand>ACAACTGCCACCACCATCGCGCCTGAGACTCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E270748" ref_strand="+" ref_description="SGN-E270748 [cLEM-6-F8]">
      <seq>accaaaattgttcagtgcataggtactattttgcacctaccctcgagcataagaaatttttttttattttcattttctcaagaactgcagatgctaaatttggcctgtttgaacatctttttaacaatctttccttaggttatacttatttctcttcaacggattagtagttttttcttctatatgctagaaatggattaagtttgctgaaactggtgccggataagatggatacacatattattcatcactcaacccattatttatccataaaaatatatgataaatagcctaatttcgagagtcttcacggtgaagtagctcgccagccccgttgaaggcaaacaacaacattatatggctattcctctatttagaagttttcgaagacttctgttactttcacatcgcaggcctctatcctcttcctctacctcgtacacgccaattcttggaaaccgagaaagctttttgcacttgtcaaggtttgtgcctcaaaatagcttaacccgacaaggctcatgttgggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="62302" stop="60949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62002" g_stop="61723" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109">
            <donor d_prob="0.155" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61613" g_stop="61451" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="443" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61336" g_stop="61249" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="531" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E270748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62002" e_stop="61723"/>
          <exon e_start="61613" e_stop="61451"/>
          <exon e_start="61336" e_stop="61249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATAGTAAGTTGGATATTCATCCATTTTTGTTTAACTTGTCCATATTCAATTCGACCCGCTCATTTGTCAGCTCCAGTCTACATGGTGAATTTCCCTTTTATTTTGTATCCAGTGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACACGTAAAGCTAATGTCTTTTTAAAAATTTCTTCACTTGTTTCTCTAGTTAATTTTGATTAAATGGAGTATGTCTGATTTAGTTTTGATTATCTCCCTCTATTGTCTCTATATTCAGGCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGAC</genome_strand>
        <mrna_strand>ACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA.............................................................................................................TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC..................................................................................................................GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E325386" ref_strand="+" ref_description="SGN-E325386 [cTOC-1-K23]">
      <seq>tccatcgatcaccaccataactccggtgagttttctctttctctctccatcaatcaccaccataactccggtgagttttctctttctctctcttccttcttcttcttcatatatcgactctttccctgcatctagatgccctccatccatgttcccctaagtccatggtaattcgaaaataggatgtgtgaatcggtgaaaatgttgagctcctcttttgatttgcttccttatgttaggattctcaatgattaactgctacccaactatgaatcccgaaacttggaatggtgcatgatcactgaatatgttgtgcacatgaagtgctcgacgaattgtcacactaaaattctcacaatgtggatcctatctgtcaggttaatcaagttgctgattcatttccttatttataaagtaatccagtttgggtttttaagtataccctgngaactatgagtcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="63252" stop="62189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62952" g_stop="62489" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E325386" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62952" e_stop="62489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAAT</genome_strand>
        <mrna_strand>TCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGACTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAAGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGNGAACTATGAGTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E429515" ref_strand="-" ref_description="SGN-E429515 [STM-52-O5]">
      <seq>tcaagaaattgaagaggggaccaatgtgaccttattgntaatgctgcatttatgcaaactatgagagaaaaagcagggtatgttcgtggtcaaggatcgggagttaagccagcgagtaggagatccagagatgaaattcaagagcaactggaagcacaacaaaaggagatagaagaagaacggcgtaaacgagagagtttagaaagcaagctaatggaagtaaaaaatcagcttgaggaggagcagagaagtcgagaagtcatggaaactcgtttagtgcatgagcaaatattgttaaaagagggcgtaatggcattagtatcccatatgcaaagttccatgaatggacttcctgctgcaattttcaacatcattaataattcaactggttcagacgaggcaagtcctacaagtcttatggataaaaactaggatgaacattcataaatcaacattgctgacaatatggttcatgtaatgcacaagctattgcaagaagattcttttagactactcttgtaattagaatgtaatgccttgcttatatcttttgttctttatgtaagtaaaagtatatatttaggagtatttagtttttggaagtaactaaatttctggtgcatgcatcagttttatggattgcatctttgcaaatatatattcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="65262" stop="63036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64962" g_stop="64620" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64619" i_stop="64479" i_length="141">
            <donor d_prob="0.861" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64478" g_stop="64389" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64388" i_stop="63844" i_length="545">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.212" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63843" g_stop="63835" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="439" r_length="7" r_score="0.667"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63834" i_stop="63722" i_length="113">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63721" g_stop="63662" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="498" r_length="59" r_score="0.817"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63661" i_stop="63531" i_length="131">
            <donor d_prob="0.900" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63530" g_stop="63519" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="509" r_length="11" r_score="0.583"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63518" i_stop="63447" i_length="72">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.58"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63446" g_stop="63349" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="611" r_length="102" r_score="0.735"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="677"/>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E429515" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429515" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64962" e_stop="64620"/>
          <exon e_start="64478" e_stop="64389"/>
          <exon e_start="63843" e_stop="63835"/>
          <exon e_start="63721" e_stop="63662"/>
          <exon e_start="63530" e_stop="63519"/>
          <exon e_start="63446" e_stop="63349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAAATTGAAGAGGGTGCCGATGTGGACCTTATTGCTAATGCTGCATTTATGCATATTATGAGAGAAAAAGCAGGGTATGTTCGTGGTCAAGGATCGGGAGTTAAGCCAGCGAGTAGGAGATCCAGAGATGAAATTCAAGAGCAACTGGAAGCACAACAAAAGGAGATAGAAGAAGAACGACGTAAACGAGAAAGTTTAGAAAGCAAGCTAATGGAAGTAAAATATCAGCTTGAAGAGGAGCGGAGAAGTCGAGAAGTCATGGAAACTCGTATAGTGCGTGAGCAAAAATTGTTAAAAGAGGGTGTAATGGCATTAGTATCCCATATGCAAAGTTCCATGGTATTTATTTAGTATAAACTGCTAAACTAATAAATGCTACATTACTACTATAGTCACTCTCACTATCTCTGCTTCTTCCTCATTCTCATATCCTTCCTTTATACGACAAACTAAATTCTTTAGTTGTGCCATGTTTAACAGAATGGACTTCCTGCTGCAATTTTCAACATCATTAATAACTCAACTGGTTCAGACGAGGCACGTCCTACAAGTCTTATGGATAAAAACTAGGTAAGTAAACTTTATCTAACTCATGTAAAATTATCTTCCTTGGTTGTATGCAAAAATGAGTCTTTAATTGCTTGATTAAGTCTTGGTACATTCTGTAGCAAAGTTTCAAGTCATTGTTATTTTGTAGTCGTATGTCTGGAAGTCATTCTTATCTTGATTTATGCATAAATGTTCGTCCAACAAGTTAAGCCTGCCCTCAAAGATACGGGACAATTTTGGCTGAAAACTCGTAGTTGGACAGCCCAAACATACCCTAAACTGTAAACTAGATACTATTATTTAGAGTACTTAATTAGATTTAAGACAAACGGAGAATTGATACATTCTCCACTGGGAGTTTTTTTTTTCTTTTCTATCGAGTAAAGTTCTCTACTAGGAGTATCTCGTGTGGTATTTGGTACAGCTTTGTATGAGCAAATACTTAGTTTGTGAGGAAGTTTTTAATGTTTTTCACCTTCACCTTATCCATTTCAGTTTCGAAATACTTCTCTTGTTTTTTGCAATTTTATTGTTAGCTGAATGTTTCTACCCCAACCATTCTATAGAATGTGAACTTCTAGTGATGCCATTAGTTGCAAAAACCAGTAAGATTATGTGGTTCCACCCTCCTTTTGCTCTTTAAATATGTACTTTATAACTTATAATTTTATTTATCTTTTATTTGTAGGATGATCAAACATTGTTGCTGACAATATGGTTCATGTAATGCACAACCCATTGCAAGAAAATATTCTTCAGTTGATGCGCTGGGATGAAAGAAAGTTCTTTGGTGCTCCTCCGGGACGAACAGTAAAGGCACATGAAGGAATTGGCTCTTACTATCGATCGGATGGAGAGATTCGCGGCGCTTTACCTTACGAATATCTAAAGGCGAAGATCTCTTTTCGACTAGCAAGTTTACGTACCTAGGTCCTAAGTTTCTCATTACTCGGTGAAGTCGAGACTACTCTTGAAATTAGAATGT--TTATATCCTT-T-TGTTCT-TTCTGTAAGTAAAAATAAAAGTATATATTTAGGAGTA-TTAGTTTTTGGAAGTTACTAAA</genome_strand>
        <mrna_strand>TCAAGAAATTGAAGAGGGGACCAATGT-GACCTTATTGNTAATGCTGCATTTATGCAAACTATGAGAGAAAAAGCAGGGTATGTTCGTGGTCAAGGATCGGGAGTTAAGCCAGCGAGTAGGAGATCCAGAGATGAAATTCAAGAGCAACTGGAAGCACAACAAAAGGAGATAGAAGAAGAACGGCGTAAACGAGAGAGTTTAGAAAGCAAGCTAATGGAAGTAAAAAATCAGCTTGAGGAGGAGCAGAGAAGTCGAGAAGTCATGGAAACTCGTTTAGTGCATGAGCAAATATTGTTAAAAGAGGGCGTAATGGCATTAGTATCCCATATGCAAAGTTCCATG.............................................................................................................................................AATGGACTTCCTGCTGCAATTTTCAACATCATTAATAATTCAACTGGTTCAGACGAGGCAAGTCCTACAAGTCTTATGGATAAAAACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--TGAAC.................................................................................................................ATTCATAAATCAACATTGCTGACAATATGGTTCATGTAATGCACAAGCTATTGCAAG-AA...................................................................................................................................GATTCT-TTTAG........................................................................ACTACTCTTGTAATTAGAATGTAATGCCTTGCTTATATCTTTTGTTCTTTATGT--AAGTAAAAGTATATATTTAGGAGTATTTAGTTTTTGGAAGTAACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E478349" ref_strand="+" ref_description="SGN-E478349 [cSTD-4-A12]">
      <seq>gggacacaaacaccggaaaagagccaaactctcagaaattttgggaaatgactcacgtgaactcaaacgggcattgggttaatgatgcttctgctgaagtgaatgataaggtgaaagaagttgttgctgaaaaaattcaagaaattgaagagggcaccgatgtggaccttattgctaatgctgcatttatgcaaattatgagagaaaaagaagggtatgttcgtggtcaaggatcgggagttaagccagcgagtaggagatccagagatgaaattcaagaacaactggaagcacaacaaaaggagatagaagaggaacggcgtaaacgagagagtttagaaagcaagctaatggaagtaaaaaatcagcttgaggaggagcggagaagtcgagaagtcatggaaactcgtttagtgcgtgagcaaaaattgttaaaagagggcgtaatggcattagtatcccatatgcaaagttccatgaatggacttcctgctgcaattttcaacatcattaataattcaactggttcagacgaggcaagtcctacaagtcttatggataaaaactaggatgaacattcataaatcaacattgctgacaatatggttcatgtaatgcacaagctattgcaagaagattcgtttagactactcttgntattagaatgtaatgccttgcttatatcttttgttctttatgtaagtaaaagtatatatttaggagtacttagtttttggaaagtaactaatttctggtgcatgcatcagttttatggattgcatctttgcaatatatattctttttactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="65484" stop="63045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65184" g_stop="65081" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65080" i_stop="64995" i_length="86">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64994" g_stop="64620" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="479" r_length="375" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64619" i_stop="64479" i_length="141">
            <donor d_prob="0.861" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64478" g_stop="64389" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="569" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64388" i_stop="63844" i_length="545">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.212" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63843" g_stop="63835" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="576" r_length="7" r_score="0.667"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63834" i_stop="63722" i_length="113">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63721" g_stop="63662" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="636" r_length="60" r_score="0.817"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63661" i_stop="63457" i_length="205">
            <donor d_prob="0.900" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63456" g_stop="63358" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="739" r_length="103" r_score="0.677"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E478349" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65184" e_stop="65081"/>
          <exon e_start="64994" e_stop="64620"/>
          <exon e_start="64478" e_stop="64389"/>
          <exon e_start="63843" e_stop="63835"/>
          <exon e_start="63721" e_stop="63662"/>
          <exon e_start="63456" e_stop="63358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACAAACACCGGAAAAGAGCCAAACTCTCAGAAATTTTGGGAAATGACTCACGTGAACTCAAATGGGCATTGGGTTAATGATGCTTCTGCTGAAGTGAATGTACATAGAAAAATCTTATCTTTATTCTTAGATGAGTCTTGTCTAATTAAATCTTGAAAGTTAAAGCTGGTATACCTTGCTTGTAGGATAAGGTGAAAGAAGTTGTTGCTGAACAAATTCAAGAAATTGAAGAGGGTGCCGATGTGGACCTTATTGCTAATGCTGCATTTATGCATATTATGAGAGAAAAAGCAGGGTATGTTCGTGGTCAAGGATCGGGAGTTAAGCCAGCGAGTAGGAGATCCAGAGATGAAATTCAAGAGCAACTGGAAGCACAACAAAAGGAGATAGAAGAAGAACGACGTAAACGAGAAAGTTTAGAAAGCAAGCTAATGGAAGTAAAATATCAGCTTGAAGAGGAGCGGAGAAGTCGAGAAGTCATGGAAACTCGTATAGTGCGTGAGCAAAAATTGTTAAAAGAGGGTGTAATGGCATTAGTATCCCATATGCAAAGTTCCATGGTATTTATTTAGTATAAACTGCTAAACTAATAAATGCTACATTACTACTATAGTCACTCTCACTATCTCTGCTTCTTCCTCATTCTCATATCCTTCCTTTATACGACAAACTAAATTCTTTAGTTGTGCCATGTTTAACAGAATGGACTTCCTGCTGCAATTTTCAACATCATTAATAACTCAACTGGTTCAGACGAGGCACGTCCTACAAGTCTTATGGATAAAAACTAGGTAAGTAAACTTTATCTAACTCATGTAAAATTATCTTCCTTGGTTGTATGCAAAAATGAGTCTTTAATTGCTTGATTAAGTCTTGGTACATTCTGTAGCAAAGTTTCAAGTCATTGTTATTTTGTAGTCGTATGTCTGGAAGTCATTCTTATCTTGATTTATGCATAAATGTTCGTCCAACAAGTTAAGCCTGCCCTCAAAGATACGGGACAATTTTGGCTGAAAACTCGTAGTTGGACAGCCCAAACATACCCTAAACTGTAAACTAGATACTATTATTTAGAGTACTTAATTAGATTTAAGACAAACGGAGAATTGATACATTCTCCACTGGGAGTTTTTTTTTTCTTTTCTATCGAGTAAAGTTCTCTACTAGGAGTATCTCGTGTGGTATTTGGTACAGCTTTGTATGAGCAAATACTTAGTTTGTGAGGAAGTTTTTAATGTTTTTCACCTTCACCTTATCCATTTCAGTTTCGAAATACTTCTCTTGTTTTTTGCAATTTTATTGTTAGCTGAATGTTTCTACCCCAACCATTCTATAGAATGTGAACTTCTAGTGATGCCATTAGTTGCAAAAACCAGTAAGATTATGTGGTTCCACCCTCCTTTTGCTCTTTAAATATGTACTTTATAACTTATAATTTTATTTATCTTTTATTTGTAGGATGATCAAACATTGTTGCTGACAATATGGTTCATGTAATGCACAACCCATTGCAAGAAAATATTCTTCAGTTGATGCGCTGGGATGAAAGAAAGTTCTTTGGTGCTCCTCCGGGACGAACAGTAAAGGCACATGAAGGAATTGGCTCTTACTATCGATCGGATGGAGAGATTCGCGGCGCTTTACCTTACGAATATCTAAAGGCGAAGATCTCTTTTCGACTAGCAAGTTTACGTACCTAGGTCCTAAGTTTCTCATTACTCGGTGAAGTCGAGACTACTCTTGAAATTAGAATGT--TTATATCCTT-T-TGTTCT-TTCTGTAAGTAAAAATAAAAGTATATATTTAGGAGTA-TTAGTTTTTGGAA</genome_strand>
        <mrna_strand>GGGACACAAACACCGGAAAAGAGCCAAACTCTCAGAAATTTTGGGAAATGACTCACGTGAACTCAAACGGGCATTGGGTTAATGATGCTTCTGCTGAAGTGAAT......................................................................................GATAAGGTGAAAGAAGTTGTTGCTGAAAAAATTCAAGAAATTGAAGAGGGCACCGATGTGGACCTTATTGCTAATGCTGCATTTATGCAAATTATGAGAGAAAAAGAAGGGTATGTTCGTGGTCAAGGATCGGGAGTTAAGCCAGCGAGTAGGAGATCCAGAGATGAAATTCAAGAACAACTGGAAGCACAACAAAAGGAGATAGAAGAGGAACGGCGTAAACGAGAGAGTTTAGAAAGCAAGCTAATGGAAGTAAAAAATCAGCTTGAGGAGGAGCGGAGAAGTCGAGAAGTCATGGAAACTCGTTTAGTGCGTGAGCAAAAATTGTTAAAAGAGGGCGTAATGGCATTAGTATCCCATATGCAAAGTTCCATG.............................................................................................................................................AATGGACTTCCTGCTGCAATTTTCAACATCATTAATAATTCAACTGGTTCAGACGAGGCAAGTCCTACAAGTCTTATGGATAAAAACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--TGAAC.................................................................................................................ATTCATAAATCAACATTGCTGACAATATGGTTCATGTAATGCACAAGCTATTGCAAGAAG.............................................................................................................................................................................................................ATTCGTTTAGACTACTCTTGNTATTAGAATGTAATGCCTTGCTTATATCTTTTGTTCTTTATGT--AAGTAAAAGTATATATTTAGGAGTACTTAGTTTTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E224841" ref_strand="-" ref_description="SGN-E224841 [cLEL-27-L21]">
      <seq>taaaaactaggatgatcaaacattgttgctgacaatatggttcatgtaatgcacaacccattgcaagaaaatattcttcagttgatgcgctgggatgaaagaaagttctttggtgctcctccgggacgaacagtaaaggcacatgaaggaattggctcttactatcgatcggatggagagattcgcggcgctttaccttacgaatatctaaaggcgaagatctcttttcgactagcaagtttacgtacctaggtcctaagtttctcattactcggtgaagtcgagactactcttgaaattagaatgtttatatccttttgttctttctgtaagtaaaaataaaagtatatatttaggagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="64024" stop="63071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63721" g_stop="63372" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="360" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="377"/>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E224841" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224841" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63721" e_stop="63372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATCAAACATTGTTGCTGACAATATGGTTCATGTAATGCACAACCCATTGCAAGAAAATATTCTTCAGTTGATGCGCTGGGATGAAAGAAAGTTCTTTGGTGCTCCTCCGGGACGAACAGTAAAGGCACATGAAGGAATTGGCTCTTACTATCGATCGGATGGAGAGATTCGCGGCGCTTTACCTTACGAATATCTAAAGGCGAAGATCTCTTTTCGACTAGCAAGTTTACGTACCTAGGTCCTAAGTTTCTCATTACTCGGTGAAGTCGAGACTACTCTTGAAATTAGAATGTTTATATCCTTTTGTTCTTTCTGTAAGTAAAAATAAAAGTATATATTTAGGAGT</genome_strand>
        <mrna_strand>GATGATCAAACATTGTTGCTGACAATATGGTTCATGTAATGCACAACCCATTGCAAGAAAATATTCTTCAGTTGATGCGCTGGGATGAAAGAAAGTTCTTTGGTGCTCCTCCGGGACGAACAGTAAAGGCACATGAAGGAATTGGCTCTTACTATCGATCGGATGGAGAGATTCGCGGCGCTTTACCTTACGAATATCTAAAGGCGAAGATCTCTTTTCGACTAGCAAGTTTACGTACCTAGGTCCTAAGTTTCTCATTACTCGGTGAAGTCGAGACTACTCTTGAAATTAGAATGTTTATATCCTTTTGTTCTTTCTGTAAGTAAAAATAAAAGTATATATTTAGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E224485" ref_strand="-" ref_description="SGN-E224485 [cLEL-27-L21]">
      <seq>ataaaaactaggatgatcaaacattgttgctgacaatatggttcatgtaatgcacaacccattgcaagaaaatattcttcagttgatgcgctgggatgaaagaaagttctttggtgctcctccgggacgaacagtaaaggcacatgaaggaattggctcttactatcgatcggatggagagattcgcggcgctttaccttacgaatatctaaaggcgaagatctcttttcgactagcaagtttacgtacctaggtcctaagtttctcattactcggtgaagtcgagactactcttgaaattagaatgtttaaatccttttgttctttctgtaagtaaaaataaaagtatatatttcccagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="64024" stop="63078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63721" g_stop="63378" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="355" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="378"/>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E224485" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224485" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="63721" e_stop="63378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATCAAACATTGTTGCTGACAATATGGTTCATGTAATGCACAACCCATTGCAAGAAAATATTCTTCAGTTGATGCGCTGGGATGAAAGAAAGTTCTTTGGTGCTCCTCCGGGACGAACAGTAAAGGCACATGAAGGAATTGGCTCTTACTATCGATCGGATGGAGAGATTCGCGGCGCTTTACCTTACGAATATCTAAAGGCGAAGATCTCTTTTCGACTAGCAAGTTTACGTACCTAGGTCCTAAGTTTCTCATTACTCGGTGAAGTCGAGACTACTCTTGAAATTAGAATGTTTATATCCTTTTGTTCTTTCTGTAAGTAAAAATAAAAGTATATATTT</genome_strand>
        <mrna_strand>GATGATCAAACATTGTTGCTGACAATATGGTTCATGTAATGCACAACCCATTGCAAGAAAATATTCTTCAGTTGATGCGCTGGGATGAAAGAAAGTTCTTTGGTGCTCCTCCGGGACGAACAGTAAAGGCACATGAAGGAATTGGCTCTTACTATCGATCGGATGGAGAGATTCGCGGCGCTTTACCTTACGAATATCTAAAGGCGAAGATCTCTTTTCGACTAGCAAGTTTACGTACCTAGGTCCTAAGTTTCTCATTACTCGGTGAAGTCGAGACTACTCTTGAAATTAGAATGTTTAAATCCTTTTGTTCTTTCTGTAAGTAAAAATAAAAGTATATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E457405" ref_strand="+" ref_description="SGN-E457405 [cPRO-2-J19]">
      <seq>aagaaagggaagggggaagacaacgggactttcaatccaaaagaaactcaaggaaagtgtcaatggaaagttgaaggtaattatcccaccagatcgaatggtagcagtaggtcctggagctaaagattttgttactgagctctcagtgacagttctccataatgctaggcatgatgtcaagaattggaagggagttgctgatcttgcaaaagataggattgttgctcatatgctggataccttccagcttccggacatacaacataatcgggatactatccttcaaacagctaaaaacttatatcgatatcgccgtagtaggctacatgatcatttcaagaaatttgctacaaaagaggtaaggttgcaaaacatgccatcacaggttagtgaagctgaatggaaattcttggtggaatatttcaactctgacgattttaagaaaatgagtgaaagaaataaaagtaataaggcaaaacaagaggtgaatcatatttgcggcagaaaatccttccaagcagtatcatttgaagcgagggacacaaacaccggaaaagagccaaactctcagaaattttgggaaatgactcacgtgaactcaaacgggcattgggttaatgatgcttctgctgaagtgaatgataaggtgnaagaagttgttgctgaaaaaatcaagaaattgaagaggggaccatgtggacctatttgctatgctgcatttatgcaactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="66703" stop="64599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66403" g_stop="66169" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66168" i_stop="65672" i_length="497">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65671" g_stop="65465" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="442" r_length="207" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65464" i_stop="65363" i_length="102">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65362" g_stop="65270" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="535" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65269" i_stop="65186" i_length="84">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65185" g_stop="65081" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="640" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65080" i_stop="64995" i_length="86">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64994" g_stop="64899" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="732" r_length="92" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E457405" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66403" e_stop="66169"/>
          <exon e_start="65671" e_stop="65465"/>
          <exon e_start="65362" e_stop="65270"/>
          <exon e_start="65185" e_stop="65081"/>
          <exon e_start="64994" e_stop="64899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGGGAAGGGGGAAGACAACTGGACTTTCAATCCAAAAGAAACTCAAGGAAAGTGTCAATGGAAAGTTGAAGGTAATTATCCCACCGGATCGAACAGTAGCAGTAGGTCCTGGAGCTAAAGATTTTGTTACTGAGCTCTCAGTGACAGTTCTCCATAATGCTAGGCATGATGTCAAGAATTGGAAGGGAGTTTCTGATCTTGCAAAAGATAGGATTGTTGCTCATATGCTGGTAACTCTCTTTCTTTCGATTAAGTTTTAAAAACTCTTTGTTCCTTGAATGCAAAAAAATATAAAATTCAATCAAAATACTTGGAAAACCAAAATAGAGAACGCCTCCCTTGAAACAAGAGAATGAAAATGAGACTAAAAAAACCATAGGCTACTCAGATCATCAAAGCAACATACATTTCAGAATCTTGAATTCCCGCTGCAGATTTCAACTTCTTGATTTGGATTTAGTTGGTTAATTTTCTTGTTTCTTTGCTTTTACTGTAGCGCGCATGAAGTCGATTTTGTTCGAAACGTTTTTGTTTCAATACACAGTCAGTTCAGAATTATGGTTTTAGATAGGGAACTAAATAATACATCAGAACAAGGATAAGTATACAAAAATGTATACTGATAAACTAACTTTAGAGCATTAGACTCTCAAGCATCCCTCAGTTTATGACAGACAATCAAAGTTCTATTTTAATTAAGCTCACTTAAATTTTATTTTGAGTGCAGGATACCTTCCAGCTTCCAGACATACAACATAATCGGGATACTATCCTTCAAACAGCTAAAAATTTATATCGATATCGCCGTAGTAGGCTACATGATCATTTCAAGAAATTTGCTACAAAAGAGTTAAGGTTGCAAAACATGCCATCACAGGTTAATGAAGCTGAATGGAAATTCTTGGTGGAATATTTCATCTCTGACGATTTTAAGGTAATTAAATAGTACAATGGATTTAACTTTATGATATTGTTTTGTTTTCTTTTTCTACTTCGTATATTTAAAATTGATTTCATGGACTCAAAATCAATGCAGAAAATGAGTGAAAGAAATAAAAGTAATAAGGCAAAACAAGAAGTGAATCATATTTGCGGCAGAAAATCCTTCCAAGCAGTATCATTTGAAGCAGTGAGATATGTCTTTCTTTTATTTTATTTTGTGGATTTTGATTTTTCCTTTTATCAGTAACGTAATTTGATTTGTTTTTGGTAGAGAGACACAAACACCGGAAAAGAGCCAAACTCTCAGAAATTTTGGGAAATGACTCACGTGAACTCAAATGGGCATTGGGTTAATGATGCTTCTGCTGAAGTGAATGTACATAGAAAAATCTTATCTTTATTCTTAGATGAGTCTTGTCTAATTAAATCTTGAAAGTTAAAGCTGGTATACCTTGCTTGTAGGATAAGGTGAAAGAAGTTGTTGCTGAACAAATTCAAGAAATTGAAGAGGGTGCCGATGTGGACCTTATTGCTAATGCTGCATTTATGCATATTATG</genome_strand>
        <mrna_strand>AAGAAAGGGAAGGGGGAAGACAACGGGACTTTCAATCCAAAAGAAACTCAAGGAAAGTGTCAATGGAAAGTTGAAGGTAATTATCCCACCAGATCGAATGGTAGCAGTAGGTCCTGGAGCTAAAGATTTTGTTACTGAGCTCTCAGTGACAGTTCTCCATAATGCTAGGCATGATGTCAAGAATTGGAAGGGAGTTGCTGATCTTGCAAAAGATAGGATTGTTGCTCATATGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACCTTCCAGCTTCCGGACATACAACATAATCGGGATACTATCCTTCAAACAGCTAAAAACTTATATCGATATCGCCGTAGTAGGCTACATGATCATTTCAAGAAATTTGCTACAAAAGAGGTAAGGTTGCAAAACATGCCATCACAGGTTAGTGAAGCTGAATGGAAATTCTTGGTGGAATATTTCAACTCTGACGATTTTAAG......................................................................................................AAAATGAGTGAAAGAAATAAAAGTAATAAGGCAAAACAAGAGGTGAATCATATTTGCGGCAGAAAATCCTTCCAAGCAGTATCATTTGAAGCG....................................................................................AGGGACACAAACACCGGAAAAGAGCCAAACTCTCAGAAATTTTGGGAAATGACTCACGTGAACTCAAACGGGCATTGGGTTAATGATGCTTCTGCTGAAGTGAAT......................................................................................GATAAGGTGNAAGAAGTTGTTGCTGAA-AAAATCAAGAAATTGAAGAGGG-GACCATGTGGACCTATTTGCT-ATGCTGCATTTATGCA-ACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E429514" ref_strand="+" ref_description="SGN-E429514 [STM-52-O5]">
      <seq>aagaaagggaagggggaagacaacgggactttcaatccaaaagaaactcaaggaaagtgtcaatggaaagttgaaggtaattatcccaccagatcgaatggtagcagtaggtcctggagctaaagattttgttactgagctctcagtgacagttctccataatgctaggcatgatgtcaagaattggaagggagttgctgatcttgcaaaagataggattgttgctcatatgctggataccttccagcttccggacatacaacataatcgggatactatccttcaaacagctaaaaacttatatcgatatcgccgtagtaggctacatgatcatttcaagaaatttgctacaaaagaggtaaggttgcaaaacatgccatcacaggttagtgaagctgaatggaaattcttggtggaatatttcaactctgacgattttaagaaaatgagtgaaagaaataaaagtaataaggcaaaacaagaggtgaatcatatttgcggcagaaaatccttccaagcagtatcatttgaagcgagggacacaaacaccggaaaagagccaaactctcagaaattttgggaaatgactcacgtgaaactcaacgggcattgggttaatgatgcttctgctgaagtgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="66703" stop="64780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66403" g_stop="66169" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66168" i_stop="65672" i_length="497">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65671" g_stop="65465" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="442" r_length="207" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65464" i_stop="65363" i_length="102">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65362" g_stop="65270" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="535" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65269" i_stop="65186" i_length="84">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65185" g_stop="65081" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="640" r_length="105" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E429514" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66403" e_stop="66169"/>
          <exon e_start="65671" e_stop="65465"/>
          <exon e_start="65362" e_stop="65270"/>
          <exon e_start="65185" e_stop="65081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGGGAAGGGGGAAGACAACTGGACTTTCAATCCAAAAGAAACTCAAGGAAAGTGTCAATGGAAAGTTGAAGGTAATTATCCCACCGGATCGAACAGTAGCAGTAGGTCCTGGAGCTAAAGATTTTGTTACTGAGCTCTCAGTGACAGTTCTCCATAATGCTAGGCATGATGTCAAGAATTGGAAGGGAGTTTCTGATCTTGCAAAAGATAGGATTGTTGCTCATATGCTGGTAACTCTCTTTCTTTCGATTAAGTTTTAAAAACTCTTTGTTCCTTGAATGCAAAAAAATATAAAATTCAATCAAAATACTTGGAAAACCAAAATAGAGAACGCCTCCCTTGAAACAAGAGAATGAAAATGAGACTAAAAAAACCATAGGCTACTCAGATCATCAAAGCAACATACATTTCAGAATCTTGAATTCCCGCTGCAGATTTCAACTTCTTGATTTGGATTTAGTTGGTTAATTTTCTTGTTTCTTTGCTTTTACTGTAGCGCGCATGAAGTCGATTTTGTTCGAAACGTTTTTGTTTCAATACACAGTCAGTTCAGAATTATGGTTTTAGATAGGGAACTAAATAATACATCAGAACAAGGATAAGTATACAAAAATGTATACTGATAAACTAACTTTAGAGCATTAGACTCTCAAGCATCCCTCAGTTTATGACAGACAATCAAAGTTCTATTTTAATTAAGCTCACTTAAATTTTATTTTGAGTGCAGGATACCTTCCAGCTTCCAGACATACAACATAATCGGGATACTATCCTTCAAACAGCTAAAAATTTATATCGATATCGCCGTAGTAGGCTACATGATCATTTCAAGAAATTTGCTACAAAAGAGTTAAGGTTGCAAAACATGCCATCACAGGTTAATGAAGCTGAATGGAAATTCTTGGTGGAATATTTCATCTCTGACGATTTTAAGGTAATTAAATAGTACAATGGATTTAACTTTATGATATTGTTTTGTTTTCTTTTTCTACTTCGTATATTTAAAATTGATTTCATGGACTCAAAATCAATGCAGAAAATGAGTGAAAGAAATAAAAGTAATAAGGCAAAACAAGAAGTGAATCATATTTGCGGCAGAAAATCCTTCCAAGCAGTATCATTTGAAGCAGTGAGATATGTCTTTCTTTTATTTTATTTTGTGGATTTTGATTTTTCCTTTTATCAGTAACGTAATTTGATTTGTTTTTGGTAGAGAGACACAAACACCGGAAAAGAGCCAAACTCTCAGAAATTTTGGGAAATGACTCACGTGAACTCAAATGGGCATTGGGTTAATGATGCTTCTGCTGAAGTGAAT</genome_strand>
        <mrna_strand>AAGAAAGGGAAGGGGGAAGACAACGGGACTTTCAATCCAAAAGAAACTCAAGGAAAGTGTCAATGGAAAGTTGAAGGTAATTATCCCACCAGATCGAATGGTAGCAGTAGGTCCTGGAGCTAAAGATTTTGTTACTGAGCTCTCAGTGACAGTTCTCCATAATGCTAGGCATGATGTCAAGAATTGGAAGGGAGTTGCTGATCTTGCAAAAGATAGGATTGTTGCTCATATGCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACCTTCCAGCTTCCGGACATACAACATAATCGGGATACTATCCTTCAAACAGCTAAAAACTTATATCGATATCGCCGTAGTAGGCTACATGATCATTTCAAGAAATTTGCTACAAAAGAGGTAAGGTTGCAAAACATGCCATCACAGGTTAGTGAAGCTGAATGGAAATTCTTGGTGGAATATTTCAACTCTGACGATTTTAAG......................................................................................................AAAATGAGTGAAAGAAATAAAAGTAATAAGGCAAAACAAGAGGTGAATCATATTTGCGGCAGAAAATCCTTCCAAGCAGTATCATTTGAAGCG....................................................................................AGGGACACAAACACCGGAAAAGAGCCAAACTCTCAGAAATTTTGGGAAATGACTCACGTGAAACTCAACGGGCATTGGGTTAATGATGCTTCTGCTGAAGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E479151" ref_strand="+" ref_description="SGN-E479151 [cSTD-8-H4]">
      <seq>agctaaaaatttatatcgatatcgccgtagtagggctacatgatcatttcaagaaatttgctacaaaagaggtaaggttgcaaaacatgccatcacaggttagtgaagctgaatggaaattcttggtggcatatttcaactctgatgaattttaagaaaatgagtgaaagaaataaaagtaataaggcaaaacaagaggtgaatcatatttgcggcagaaaatccttccaagcagtatcatttgaagcgagggacacaaacaccggaaaagagccaaactctcagaaattttgggaaatgactcacgtgaactcaacgggcattgggttaatgatgcttctgctgaagtgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="65918" stop="64780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65618" g_stop="65465" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65464" i_stop="65363" i_length="102">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65362" g_stop="65270" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="249" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65269" i_stop="65186" i_length="84">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65185" g_stop="65081" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="353" r_length="104" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E479151" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65618" e_stop="65465"/>
          <exon e_start="65362" e_stop="65270"/>
          <exon e_start="65185" e_stop="65081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTAAAAATTTATATCGATATCGCCGTAGTAGG-CTACATGATCATTTCAAGAAATTTGCTACAAAAGAGTTAAGGTTGCAAAACATGCCATCACAGGTTAATGAAGCTGAATGGAAATTCTTGGTGGAATATTTCATCTCTGACG-ATTTTAAGGTAATTAAATAGTACAATGGATTTAACTTTATGATATTGTTTTGTTTTCTTTTTCTACTTCGTATATTTAAAATTGATTTCATGGACTCAAAATCAATGCAGAAAATGAGTGAAAGAAATAAAAGTAATAAGGCAAAACAAGAAGTGAATCATATTTGCGGCAGAAAATCCTTCCAAGCAGTATCATTTGAAGCAGTGAGATATGTCTTTCTTTTATTTTATTTTGTGGATTTTGATTTTTCCTTTTATCAGTAACGTAATTTGATTTGTTTTTGGTAGAGAGACACAAACACCGGAAAAGAGCCAAACTCTCAGAAATTTTGGGAAATGACTCACGTGAACTCAAATGGGCATTGGGTTAATGATGCTTCTGCTGAAGTGAAT</genome_strand>
        <mrna_strand>AGCTAAAAATTTATATCGATATCGCCGTAGTAGGGCTACATGATCATTTCAAGAAATTTGCTACAAAAGAGGTAAGGTTGCAAAACATGCCATCACAGGTTAGTGAAGCTGAATGGAAATTCTTGGTGGCATATTTCAACTCTGATGAATTTTAAG......................................................................................................AAAATGAGTGAAAGAAATAAAAGTAATAAGGCAAAACAAGAGGTGAATCATATTTGCGGCAGAAAATCCTTCCAAGCAGTATCATTTGAAGCG....................................................................................AGGGACACAAACACCGGAAAAGAGCCAAACTCTCAGAAATTTTGGGAAATGACTCACGTGAACTC-AACGGGCATTGGGTTAATGATGCTTCTGCTGAAGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E302619" ref_strand="-" ref_description="SGN-E302619 [cLEX-1-I11]">
      <seq>tgaatacatgaagaaacccgagtttattgagctaatgaggaggcttggtgcattaggtgatgggaaccaagaccaaagtactttatcaccggacgaatgggaggtagcctacctttatttggcatttgttctaaggaagcgagggcaaccggatcaaacacgaagaaaccctagacgagacaaaggcaagatgcaactgacaaaagacgatattgagaatgttaacggtgcagtgtagtgccgaaacgactgttatgggacatgaggaagtatctgaaatgaagaggaacaataaacacagtcccctcttcaactcgataaatccagctgctaatcaattttgcagaacaaagactaattttcgcctttatcatttgttacatcatcaactcactgttgtactacaacataaaaaagttgatgtgggcaaaggtggctggttctaatgatactagtcaccagtgctatgttcgtttgtccacttgcaactttccatgtaactctctgtatcattacatatttatagtgagaatgagaaaatagccaaaaatatcaatctgggatattaagataaaaatgttttagagatctaagacaattgaacactgagtgactgatgtcaagatcaaatatatgttgtttgtttacttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="76127" stop="74504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75827" g_stop="75751" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75750" i_stop="75623" i_length="128">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75622" g_stop="75561" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="139" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75560" i_stop="75316" i_length="245">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75315" g_stop="74805" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="650" r_length="511" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E302619" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302619" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75827" e_stop="75751"/>
          <exon e_start="75622" e_stop="75561"/>
          <exon e_start="75315" e_stop="74805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATACATGAAGAAACCCGAGTTTATTGAGCTAATGAGGAGGCTTGGTGCATTAGGTGATGGGAACCAAGACCAAAGTAAGTTTTGGTCATCTTAGATGCTGAATATTAGTGCTGTGCTCTTTCATCCAAGTATTTTTGATATTTGATGCTTGTTACATATGCCTACCCAAAACTTGTGTTATGACATATTTTGCTAATTACAGGTACTTTATCACCGGACGAATGGGAGGTAGCCTACCTTTATTTGGCATTTGTTCTAAGGAAGGTATGAACGTACCTAATTCATGTTTTAATATTACCTGTTATTGTTAAACAGTAATCCACGACCCAAACTTTGGGGGTGGGGGGTGGGGTGGGGGGGCATGACTAGCATCCGACAGCATATTCTTTGTTGATAGAATGCTTCCCTTAACCTTGTTCAAAAATTACTTATGCAAAGCAGGCCTTTGCATGGATGATGGCATTGATTCTTGTGATTGTGATCTTGGTGAAATCTTGTTTATTTTGCAGCGAGGGCAACCGGATCAAACACGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAACTGACAAAAGACGATATTGAGAATGTTAACGGTGCAGTGTAGTGCCGAAACGACTGTTATGGGACATGAGGAAGTATCTGAAATGAAGAGGAACAATAAACACAGTCCCCTCTTCAACTCGATAAATCCAGCTGCTAATCAATTTTGCAGAACAAAGACTAATTTTCGCCTTTATCATTTGTTACATCATCAACTCACTGTTGTACTACAACATAAAAAAGTTGATGTGGGCAAAGGTGGCTGGTTCTAATGATACTAGTCACCAGTGCTATGTTCGTTTGTCCACTTGCAACTTTCCATGTAACTCTCTGTATCATTACATATTTATAGTGAGAATGAGAAAATAGCCAAAAATATCAATCTGGGATATTAAGATAAAAATGTTTTAGAGATCTAAGACAATTGAACACTGAGTGACTGATGTCAAGATCAAATATATGTTGTTTGTTTACTT</genome_strand>
        <mrna_strand>TGAATACATGAAGAAACCCGAGTTTATTGAGCTAATGAGGAGGCTTGGTGCATTAGGTGATGGGAACCAAGACCAAA................................................................................................................................GTACTTTATCACCGGACGAATGGGAGGTAGCCTACCTTTATTTGGCATTTGTTCTAAGGAAG.....................................................................................................................................................................................................................................................CGAGGGCAACCGGATCAAACACGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAACTGACAAAAGACGATATTGAGAATGTTAACGGTGCAGTGTAGTGCCGAAACGACTGTTATGGGACATGAGGAAGTATCTGAAATGAAGAGGAACAATAAACACAGTCCCCTCTTCAACTCGATAAATCCAGCTGCTAATCAATTTTGCAGAACAAAGACTAATTTTCGCCTTTATCATTTGTTACATCATCAACTCACTGTTGTACTACAACATAAAAAAGTTGATGTGGGCAAAGGTGGCTGGTTCTAATGATACTAGTCACCAGTGCTATGTTCGTTTGTCCACTTGCAACTTTCCATGTAACTCTCTGTATCATTACATATTTATAGTGAGAATGAGAAAATAGCCAAAAATATCAATCTGGGATATTAAGATAAAAATGTTTTAGAGATCTAAGACAATTGAACACTGAGTGACTGATGTCAAGATCAAATATATGTTGTTTGTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E543045" ref_strand="-" ref_description="SGN-E543045 [TUS-64-K14]">
      <seq>atgaatacatgaagaaacccgagtttattgagcttatgaggaggcttggtgcattaggtgatgggaaccaagaccaaagtattttatcaccggacgaatgggaggtagcctacctttatgtggcatttgttctaaggaagcgagggcaaccggatcaaactcgaagaaaccctagacgagacaaaggcaagatgcaactgacaaaagatgatattgagaatgttaacggtgcagtgtagtgccgaaacgactgttatgggacatgaggaagtatctgaaatgaagaggaacaataaacacagtcccctcttcaactcgataaatccagctgttaatcaattttgcagaacaaagactaattttcgcctttatcatttgttacatcatcaactcactgttgtactacaacataaaaaagttgatgtgggcaaaggtggctggttctaatgatactagtcaccagtgctatgttcgtttgtccacttgcaactttccatgtaactctctgtatcattacatatttatagtgagaatgagaaaatagccaaaaatatcaatctgggatattaagataaaaatgttttagagatctaagacaattgaaacactgagtgactgatgtcaagatcaaatatatgtgtttgtttcttaaaaaagaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="76128" stop="74504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75828" g_stop="75751" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75750" i_stop="75623" i_length="128">
            <donor d_prob="0.917" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75622" g_stop="75561" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="140" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75560" i_stop="75316" i_length="245">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75315" g_stop="74809" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="647" r_length="507" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="667"/>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E543045" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543045" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75828" e_stop="75751"/>
          <exon e_start="75622" e_stop="75561"/>
          <exon e_start="75315" e_stop="74809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATACATGAAGAAACCCGAGTTTATTGAGCTAATGAGGAGGCTTGGTGCATTAGGTGATGGGAACCAAGACCAAAGTAAGTTTTGGTCATCTTAGATGCTGAATATTAGTGCTGTGCTCTTTCATCCAAGTATTTTTGATATTTGATGCTTGTTACATATGCCTACCCAAAACTTGTGTTATGACATATTTTGCTAATTACAGGTACTTTATCACCGGACGAATGGGAGGTAGCCTACCTTTATTTGGCATTTGTTCTAAGGAAGGTATGAACGTACCTAATTCATGTTTTAATATTACCTGTTATTGTTAAACAGTAATCCACGACCCAAACTTTGGGGGTGGGGGGTGGGGTGGGGGGGCATGACTAGCATCCGACAGCATATTCTTTGTTGATAGAATGCTTCCCTTAACCTTGTTCAAAAATTACTTATGCAAAGCAGGCCTTTGCATGGATGATGGCATTGATTCTTGTGATTGTGATCTTGGTGAAATCTTGTTTATTTTGCAGCGAGGGCAACCGGATCAAACACGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAACTGACAAAAGACGATATTGAGAATGTTAACGGTGCAGTGTAGTGCCGAAACGACTGTTATGGGACATGAGGAAGTATCTGAAATGAAGAGGAACAATAAACACAGTCCCCTCTTCAACTCGATAAATCCAGCTGCTAATCAATTTTGCAGAACAAAGACTAATTTTCGCCTTTATCATTTGTTACATCATCAACTCACTGTTGTACTACAACATAAAAAAGTTGATGTGGGCAAAGGTGGCTGGTTCTAATGATACTAGTCACCAGTGCTATGTTCGTTTGTCCACTTGCAACTTTCCATGTAACTCTCTGTATCATTACATATTTATAGTGAGAATGAGAAAATAGCCAAAAATATCAATCTGGGATATTAAGATAAAAATGTTTTAGAGATCTAAGACAATTG-AACACTGAGTGACTGATGTCAAGATCAAATATATGTTGTTTGTTT</genome_strand>
        <mrna_strand>ATGAATACATGAAGAAACCCGAGTTTATTGAGCTTATGAGGAGGCTTGGTGCATTAGGTGATGGGAACCAAGACCAAA................................................................................................................................GTATTTTATCACCGGACGAATGGGAGGTAGCCTACCTTTATGTGGCATTTGTTCTAAGGAAG.....................................................................................................................................................................................................................................................CGAGGGCAACCGGATCAAACTCGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAACTGACAAAAGATGATATTGAGAATGTTAACGGTGCAGTGTAGTGCCGAAACGACTGTTATGGGACATGAGGAAGTATCTGAAATGAAGAGGAACAATAAACACAGTCCCCTCTTCAACTCGATAAATCCAGCTGTTAATCAATTTTGCAGAACAAAGACTAATTTTCGCCTTTATCATTTGTTACATCATCAACTCACTGTTGTACTACAACATAAAAAAGTTGATGTGGGCAAAGGTGGCTGGTTCTAATGATACTAGTCACCAGTGCTATGTTCGTTTGTCCACTTGCAACTTTCCATGTAACTCTCTGTATCATTACATATTTATAGTGAGAATGAGAAAATAGCCAAAAATATCAATCTGGGATATTAAGATAAAAATGTTTTAGAGATCTAAGACAATTGAAACACTGAGTGACTGATGTCAAGATCAAATATATG-TGTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E542470" ref_strand="+" ref_description="SGN-E542470 [TUS-63-M17]">
      <seq>ggataaccctatgttgattttcaggatttaataagaggataacctatgttgattttcaggatttaataagaggacaaccctatgttgatttacaggatttaataggaggaggataacattccaagcatataatacacagataatcttttgtaagtcgtgttaagatgggaattctccacctgttgatatatgtacataaactatgtctgatcaaaacttaataaatgagttttgagccccaaagtagtgtttggtttcattcacagcacatgcaaaatccataaataatagagtaagaacagttgttcagtctgctagaacttgcaaatcatggaggctaaaagacaaataaaaatccttcaatgtgcatgattctaaacaagtaaagcaaaaactgaaaaccatacatgcctactagctataaaacaaataaattattcaaatggaagcgctgagatttgtactttgaaactaaaatcgacaaaggagcgcatacacactttaatcaataacaataatactgaaggacacagctaagatatataggaaggcataaatctgtacacacctccagatggaacttgtatttgatgccaaaaggatttgaagatttgaatttctgcaacaatggaaaatcttaatatacaactacttatagtagtaacaacagaaatcagaaaattgctagaaaatgataacacaagttaccttctctgaaaattcttcatcaaaacgtatccaatagacactattaccaaaggctagcccctcagctgcacttccaaagacaaacaggaaccatatatncacaaatctttaatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="76632" stop="78056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76932" g_stop="77756" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-E542470" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76932" e_stop="77756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAACCCTATGTTGATTTTCAGGATTTAATAAGAGGATAACCTATGTTGATTTTCAGGATTTAATAAGAGGACAACCCTATGTTGATTTACAGGATTTAATAGGAGGAGGATAACATTCCAAGCATATAATACACAGATAATCTTTTGTAAGTCGTGTTAAGATGGGAATTCTCCACCTGTTGATATATGTACATAAACTATGTCTGATCAAAACTTAATAAATGAGTTTTGAGCCCCAAAGTAGTGTTTGGTTTCATTCACAGCACATGCAAAATCCATAAATAATAGAGTAAGAACAGTTGTTCAGTCTGCTAGAACTTGCAAATCATGGAGGCTAAAAGACAAATAAAAATCCTTCAATGTGCATGATTCTAAACAAGTAAAGCAAAAACTGAAAACCATACATGCCTACTAGCTATAAAACAAATAAATTATTCAAATGGAAGCGCTGAGATTTGTACTTTGAAACTAAAATCGACAAAGGAGCGCATACACACTTTAATCAATAACAATAATACTGAAGGACACAGCTAAGATATATAGGAAGGCATAAATCTGTACACACCTCCAGATGGAACTTGTATTTGATGCCAAAAGGATTTGAAGATTTGAATTTCTGCAACAATGGAAAATCTTAATATACAACTACTTATAGTAGTAACAACAGAAATCAGAAAATTGCTAGAAAATGATAACACAAGTTACCTTCTCTGAAAATTCTTCATCAAAACGTATCCAATAGACACTATTACCAAAGGCTAGCCCCTCAGCTGCACTTCCAAAGACAAACAGGAACCATATATCAACAAATCTTTAATCTGG</genome_strand>
        <mrna_strand>GGATAACCCTATGTTGATTTTCAGGATTTAATAAGAGGATAACCTATGTTGATTTTCAGGATTTAATAAGAGGACAACCCTATGTTGATTTACAGGATTTAATAGGAGGAGGATAACATTCCAAGCATATAATACACAGATAATCTTTTGTAAGTCGTGTTAAGATGGGAATTCTCCACCTGTTGATATATGTACATAAACTATGTCTGATCAAAACTTAATAAATGAGTTTTGAGCCCCAAAGTAGTGTTTGGTTTCATTCACAGCACATGCAAAATCCATAAATAATAGAGTAAGAACAGTTGTTCAGTCTGCTAGAACTTGCAAATCATGGAGGCTAAAAGACAAATAAAAATCCTTCAATGTGCATGATTCTAAACAAGTAAAGCAAAAACTGAAAACCATACATGCCTACTAGCTATAAAACAAATAAATTATTCAAATGGAAGCGCTGAGATTTGTACTTTGAAACTAAAATCGACAAAGGAGCGCATACACACTTTAATCAATAACAATAATACTGAAGGACACAGCTAAGATATATAGGAAGGCATAAATCTGTACACACCTCCAGATGGAACTTGTATTTGATGCCAAAAGGATTTGAAGATTTGAATTTCTGCAACAATGGAAAATCTTAATATACAACTACTTATAGTAGTAACAACAGAAATCAGAAAATTGCTAGAAAATGATAACACAAGTTACCTTCTCTGAAAATTCTTCATCAAAACGTATCCAATAGACACTATTACCAAAGGCTAGCCCCTCAGCTGCACTTCCAAAGACAAACAGGAACCATATATNCACAAATCTTTAATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E302177" ref_strand="+" ref_description="SGN-E302177 [cLEW-19-N10]">
      <seq>gataaccctatgttgattttcaggatttaataagaggataacctatgttgattttcaggatttaataagaggacaaccctatgttgatttacaggatttaataggaggaggataacattccaagcatataatacacagataatcttttgtaagtcgtgttaagatgggaattctccacctgttgatatatgtacataaactatgtctgatcaaaacttaataaatgagttttgagccccaaagtagtgtttggtttcattcacagcacatgcaaaatccataaataatagagtaagaacagttgttcagtctgctagaacttgcaaatcatggaggctaaaagacaaataaaaatccttcaatgtgcatgattctaaacaagtaaagcaaaaactgaaaaccatacatgcctactagctataaaacaaataaattattcaaatggaagcgctgagatttgtactttgaaactaaaatcgacaaaggagcgcatacacactttaatcaataacaataatactgaaggacacagctaagatatataggaaggcataaatctgtacacacctccagatggaacttgtatttgatgccaaaaggatttgaagatttgaatttctgcaacaatggaaaatcttaatatacaactacttatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="76633" stop="77889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76933" g_stop="77589" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-E302177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76933" e_stop="77589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACCCTATGTTGATTTTCAGGATTTAATAAGAGGATAACCTATGTTGATTTTCAGGATTTAATAAGAGGACAACCCTATGTTGATTTACAGGATTTAATAGGAGGAGGATAACATTCCAAGCATATAATACACAGATAATCTTTTGTAAGTCGTGTTAAGATGGGAATTCTCCACCTGTTGATATATGTACATAAACTATGTCTGATCAAAACTTAATAAATGAGTTTTGAGCCCCAAAGTAGTGTTTGGTTTCATTCACAGCACATGCAAAATCCATAAATAATAGAGTAAGAACAGTTGTTCAGTCTGCTAGAACTTGCAAATCATGGAGGCTAAAAGACAAATAAAAATCCTTCAATGTGCATGATTCTAAACAAGTAAAGCAAAAACTGAAAACCATACATGCCTACTAGCTATAAAACAAATAAATTATTCAAATGGAAGCGCTGAGATTTGTACTTTGAAACTAAAATCGACAAAGGAGCGCATACACACTTTAATCAATAACAATAATACTGAAGGACACAGCTAAGATATATAGGAAGGCATAAATCTGTACACACCTCCAGATGGAACTTGTATTTGATGCCAAAAGGATTTGAAGATTTGAATTTCTGCAACAATGGAAAATCTTAATATACAACTACTTATAG</genome_strand>
        <mrna_strand>GATAACCCTATGTTGATTTTCAGGATTTAATAAGAGGATAACCTATGTTGATTTTCAGGATTTAATAAGAGGACAACCCTATGTTGATTTACAGGATTTAATAGGAGGAGGATAACATTCCAAGCATATAATACACAGATAATCTTTTGTAAGTCGTGTTAAGATGGGAATTCTCCACCTGTTGATATATGTACATAAACTATGTCTGATCAAAACTTAATAAATGAGTTTTGAGCCCCAAAGTAGTGTTTGGTTTCATTCACAGCACATGCAAAATCCATAAATAATAGAGTAAGAACAGTTGTTCAGTCTGCTAGAACTTGCAAATCATGGAGGCTAAAAGACAAATAAAAATCCTTCAATGTGCATGATTCTAAACAAGTAAAGCAAAAACTGAAAACCATACATGCCTACTAGCTATAAAACAAATAAATTATTCAAATGGAAGCGCTGAGATTTGTACTTTGAAACTAAAATCGACAAAGGAGCGCATACACACTTTAATCAATAACAATAATACTGAAGGACACAGCTAAGATATATAGGAAGGCATAAATCTGTACACACCTCCAGATGGAACTTGTATTTGATGCCAAAAGGATTTGAAGATTTGAATTTCTGCAACAATGGAAAATCTTAATATACAACTACTTATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E542467" ref_strand="+" ref_description="SGN-E542467 [TUS-63-M17]">
      <seq>ggcccccctcgagactagttctctcctatagaggtacatgcttatatgaattgaatcacttttatataactgcatctctttctatgagcattatgaggtgttttggatatgttgatgccctcgtaaaatatctcatctcaagctttcgtgtttttggttcctggctatgttaaatgtgtctagcctatagaggtacatgcttatatgaattgaatcacttttatataactgcatctctttctatgagcattatgaggtgttttggatatgttgatgccctcgtaaaatatctcatctcaagctttcgtgtttttggttcctggctatgttaaatgtgtcatttgtcctattttagtttttgtccagcttttactttctattttgccaatgaaaacttgaaaattcattagtgtgttcagaagcttctccaaactagctcactgaaaaaggtgtataatccacatctttcttaaattttgaaaaaaactgtaaaaactgaagtagaggtttatgaaagatgtttgtacagtgtcctcctaattggatgcctctgcctagtatctggagaagcgacagccctttatccagaatttatgtttgtcctgggtggcctcttacagattctaagctatgaaaaattgaaatttgcagtttgctatgcattattcgtggtctactgaggcacgtgcacgacgtgcactggccaacatctcagttttactccgacccggaggaatatttattggaacaatgccagatgccaatgtcatcgtcaagaagtatagagaaagttcaactttactcaattctgccctgtttgtccctgttgaatctataaatgttatgactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="79722" stop="78284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79411" g_stop="78584" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="852" r_length="828" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E542467" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79411" e_stop="78584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCTAGCCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCATTTGTCCTATTTTAGTTTTTGTCCAGCTTTTACTTTCTATTTTGCCAATGAAAACTTGAAAATTCATTAGTGTGTTCAGAAGCTTCTCCAAACTAGCTCACTGAAAAAGGTGTATAATCCACATCTTTCTTAAATTTTGAAAAAAACTGTAAAAACTGAAGTAGAGGTTTATGAAAGATGTTTGTACAGTGTCCTCCTAATTGGATGCCTCTGCCTAGTATCTGGAGAAGCGACAGCCCTTTATCCAGAATTTATGTTTGTCCTGGGTGGCCTCTTACAGATTCTAAGCTATGAAAAATTGAAATTTGCAGTTTGCTATGCATTATTCGTGGTCTACTGAGGCACGTGCACGACGTGCACTGGCCAACATCTCAGTTTTACTCCGACCCGGAGGAATATTTATTGGAACAATGCCAGATGCCAATGTCATCGTCAAGAAGTATAGAGAAGGTTCAACTTTACTCAATTCTGCCCTGTTTGTCCCTGTTGAATCTATAAATGTTATGACTCTG</genome_strand>
        <mrna_strand>CCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCTAGCCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCATTTGTCCTATTTTAGTTTTTGTCCAGCTTTTACTTTCTATTTTGCCAATGAAAACTTGAAAATTCATTAGTGTGTTCAGAAGCTTCTCCAAACTAGCTCACTGAAAAAGGTGTATAATCCACATCTTTCTTAAATTTTGAAAAAAACTGTAAAAACTGAAGTAGAGGTTTATGAAAGATGTTTGTACAGTGTCCTCCTAATTGGATGCCTCTGCCTAGTATCTGGAGAAGCGACAGCCCTTTATCCAGAATTTATGTTTGTCCTGGGTGGCCTCTTACAGATTCTAAGCTATGAAAAATTGAAATTTGCAGTTTGCTATGCATTATTCGTGGTCTACTGAGGCACGTGCACGACGTGCACTGGCCAACATCTCAGTTTTACTCCGACCCGGAGGAATATTTATTGGAACAATGCCAGATGCCAATGTCATCGTCAAGAAGTATAGAGAAAGTTCAACTTTACTCAATTCTGCCCTGTTTGTCCCTGTTGAATCTATAAATGTTATGACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E460923" ref_strand="+" ref_description="SGN-E460923 [cPRO-33-D22]">
      <seq>ctaattccttgttcttctctcactgttttatagcttactgttccagatttgttcataatccatactgttgtacttgctggctcttaaattatgaaaataagctactctgaatctccatcttctagttcttttggacctccacaatccaaatttaagcataacccagaaggcgacactcattttctggaatatgagagtacaaaaatctttgccaggaaagtggctgatcattacagtgcgaggaccaatctaactcttgaagagcgcgaagcaagtcctatcatccgtttagagaaacttaataattggatcaagagtgtcttgattcagctttatacgaaaagaggggatgcagttcttgatcttgcttgtgggaagggtggtgatctcatcaaatgggataaagcaaagattggatattacgttggtattgatattgccgatggttcaatagaagactgccggacccgttacaatggtgaggcagatcaccatcatcgacgcaaaaagttctcatttcctgccacactcctgtgtggagattgttatgaggttcgtttggatagggtattatcagatgatgcaccttttgatgtttgtagctgacagattgctatgcattattcgtggcctactgaggcacgtgcacggcgtgcgctggccaatatctcagctttactccgacctggaggaatatttattggaacgatgccatatgccaatgtcattgtcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="82821" stop="78358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82521" g_stop="82361" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82360" i_stop="81380" i_length="981">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.521" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81379" g_stop="81240" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="309" r_length="140" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81239" i_stop="81168" i_length="72">
            <donor d_prob="0.802" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81167" g_stop="81099" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="378" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81098" i_stop="80984" i_length="115">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80983" g_stop="80912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="450" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80911" i_stop="80080" i_length="832">
            <donor d_prob="0.841" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80079" g_stop="79978" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="552" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79977" i_stop="79697" i_length="281">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79696" g_stop="79640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="609" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79639" i_stop="78785" i_length="855">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78784" g_stop="78658" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="736" r_length="127" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E460923" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82521" e_stop="82361"/>
          <exon e_start="81379" e_stop="81240"/>
          <exon e_start="81167" e_stop="81099"/>
          <exon e_start="80983" e_stop="80912"/>
          <exon e_start="80079" e_stop="79978"/>
          <exon e_start="79696" e_stop="79640"/>
          <exon e_start="78784" e_stop="78658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCCTTCTTCTTCTCTCACTGTTTTATAGCTTAGTGTTGCAGATTTGTTCATAATCTATAC---TG-A-TTG-T-GCT-TCAAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAGGTATATTGTCATCTTCTTTGTTTTTATTATCTTTTCTTGGAATTATATGGATAGAGCATGCTGAAGTTAGAGACTTTACTTGTATTTTAGCTAAATCCAGATGGTAATTTTTTGTTTTCAAAAGACCCCATTTGGGATTTACCTAATTTGGTGTAGATGGATATATGCATATTCGTTTTGTTTATTGAATGAGTACATGTAAAATTAGAAACTTTACTTGTGCATAAGCACAACCCAGAAGGGAATTTTGTAATATTTACTTGTAAGACAAATTCACGCATTTCTTTGTATAGATAGATATGAATACAACATATTTGTTCATTGCTGTGTTTGTTCTTGTTTTATTAACTGTGGTGTCGGGGTTAGCTTGGGCGTAAATTGACGTGATACTAGTCACTGGCTACCAGCACGTGTAATAGGTATCGGGAAATTCCATGTGATACTAGCCACCGGCTACCAGTAACGTGTAACAGGTATCAGGTGACTCCGTTGCTAGGACAGATGGAAAGAAATCACCTAGTGTTTTTTTTTATCTGTAATGAGATTGAGACCTTTCAGTTTCACTTCATTGACAACTAGGCCACACTGTCGGATGCCCGTGAAGTTAGAGAACTACTGCTTTTTTTAAAGCATAACCTAGAAGAGATTTTTCTCATGTTTTTATTTAATAGTAACTGCTTTTGATTTTCATTATCTGTCACCGGTATAGAAATAGATATAACATATTTGTTCATTGTTGCATTAGTTAGTAATAAGAAGGATACTGTTATTTTCGCTGCTTAAGTGTTCTGCTACAATTATTGTAATGTCTGAATTTTATTTACGATGCAGGGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGGGTATGTCTTTTTTATTCATAGGCGGGGTTATTCTGCGTAGTCCATTGCTAATGAGGCTTTCTGGCTTGTTAGATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAGGTACTTTTTCCTTATTTTACACCCCAATTATCTGGCAGCAGCGAGCTGTTAGAATTTCTAGGTGGTAATTAACCAAGTAGCCATGCATCTTATTCTCACTTTCTGTTTGAACCAGGGTGGCGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATCGCCGATGGTTCAGTAAGTTCCTGCTGGATGAATACATTTTTTGGTGTTTTTGTGCTTGCCACTGCAAGTCAGATCTCCCTTTCAGCAAGATATTTACATGCTTAGCAATTTGTATGGCTTTCTAGAAGATGCTTTTTATCAGTACTTAGATATTTTGCAGTTAAACATTATTAAATGTTATTAACCGAACATCTGAAGGTTTACTATGCGATTCAGCTGTTAGAGTGGTGCTTGCAGTGAAGTATACTATAACAAGTATTCTAGGGGGCCGTTTGGCCATGTGAGATGAAATCATATGTGATGAAGTTGAAGTTTTGTTTGGACATGCAACTTGGTTGTGGTTAAAACATAAAAAACTTTCAAAACTACCCCAATTTTTTTTATAGTATCTTACTGGATAAGTTGAAGTTTATAACAAAAGTTTAATACACTATAACAAAGTTATTGAGTTGCTATTTAACTTCAGGGGAATGTTGATCAAATTTTTGTCTGTCTTTTAATTGGAGGTTAATCTGGATATTAACTCAAAGAGAAGGCCACAAAAGCTTTCTTGAATTCTAACTTGTTGACATCAATACTAAATGATTCAGGCATAGGAGATGCTGGCATTTCTTAATTGAGTCCTCCATTCTGTAGATTTACATGCTAGGTTTCTTCCTTTATTTGCGGGAATGAATATCCATCTCATAGAATGTTATATTACTCTATTTTTCTTTTGACCAAGTAAAATAATTATATTCCTCTCTATATTTATGTTAAATTCTAGTTTTTGAGGTCTATTTTTATTTTCTATTGTATTTGAGTGCTACCCTGACTTTTGATATTATTCTTAAATTATGTAAAGATAGAAGACTGCCGGACTCGTTACAATGGTGAGGCAGATCATCATCAGCGGCGCAAAAAGTTCTCATTTCCTGCCAGACTCCTGTGTGGAGATTGTTATGAGGTAAATCAGTCACATGATTGATCAAGTTTTCTCATTCTTTCAGATGGAACTGAAATTTTTTTATCTTTTTGTTGCTTTTTTTTTTTCGTGTTGTAAAGATTATTATGGATGTATGATGAATCATTTACTAGACGTACAATGACCTTAGATATCATGTCATTAGCTGGATGTGTAGTGATGATCAATATATGGTTAAATCCACTGATAATCCAAACAGCTGCATGCTTTTATTGAAACATCAAGGCGGATGATTCTACTGATATCTTGTGTGGGAATTTCAGGTTCGCTTGGATAGGGTTTTAGCAGATGATGCACCTTTTGATGTTTGTAGCTGTCAGGTATGTCAGTCTCCTACAGTTCCTATGGTGTAGCTAGCATTGTTCTTTTGGGAGTTAGGTGAAAAAATAGTCCAAGACTTTGTTCTCAAGGAGCCATATATCATTCTCCTTCAAAAATATTTCGTGTCTATCAGAAAAGTAGTTCAATTAAGCCATAAAGTAACTACTCCATTATCAAAAGGAGTAGTTATTTATGGCTTAATTGAACTATTTTCTGCTATTTCTTGGCCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCTAGCCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCATTTGTCCTATTTTAGTTTTTGTCCAGCTTTTACTTTCTATTTTGCCAATGAAAACTTGAAAATTCATTAGTGTGTTCAGAAGCTTCTCCAAACTAGCTCACTGAAAAAGGTGTATAATCCACATCTTTCTTAAATTTTGAAAAAAACTGTAAAAACTGAAGTAGAGGTTTATGAAAGATGTTTGTACAGTGTCCTCCTAATTGGATGCCTCTGCCTAGTATCTGGAGAAGCGACAGCCCTTTATCCAGAATTTATGTTTGTCCTGGGTGGCCTCTTACAGATTCTAAGCTATGAAAAATTGAAATTTGCAGTTTGCTATGCATTATTCGTGGTCTACTGAGGCACGTGCACGACGTGCACTGGCCAACATCTCAGTTTTACTCCGACCCGGAGGAATATTTATTGGAACAATGCCAGATGCCAATGTCATCGTCAAGA</genome_strand>
        <mrna_strand>CTAATTCCTTGTTCTTCTCTCACTGTTTTATAGCTTACTGTTCCAGATTTGTTCATAATCCATACTGTTGTACTTGCTGGCTCTTAAATTATGAAAATAAGCTACTCTGAATCTCCATCTTCTAGTTCTTTTGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACACTCATTTTCTGGAATATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCTAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCGTTTAGAGAAACTTAATAATTGG........................................................................ATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAG...................................................................................................................GGTGGTGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATTGCCGATGGTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAGACTGCCGGACCCGTTACAATGGTGAGGCAGATCACCATCATCGACGCAAAAAGTTCTCATTTCCTGCCACACTCCTGTGTGGAGATTGTTATGAG.........................................................................................................................................................................................................................................................................................GTTCGTTTGGATAGGGTATTATCAGATGATGCACCTTTTGATGTTTGTAGCTGACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTATGCATTATTCGTGGCCTACTGAGGCACGTGCACGGCGTGCGCTGGCCAATATCTCAGCTTTACTCCGACCTGGAGGAATATTTATTGGAACGATGCCATATGCCAATGTCATTGTCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E302618" ref_strand="+" ref_description="SGN-E302618 [cLEX-1-I11]">
      <seq>tgcagatttgttcataatctatactgattgtgcttcaaattatgaagagaagttactcaggatctccatcttcgagttcttatggacctccacaatccaaatttaagcataacccagaagggtagttttttaactgctaggggcgatgtattatcccataaataattgaacttctgatgctaaactttaggaagttgtaacctttttggataaagaagccagaagttggttttctattgcggtttgattaaaagtttgaactggtgtcaggcgacactcattttctggaagatgagagtacaaaaatctttgccaggaaagtggctgatcattacagtgcgaggaccaatcaaactcttgaagagcgcgaagcaagtcctatcatccatttaaagaaacttaataattggatcaagagtgtcttgattcagctttatacgaaaagaggggatgcagttcttgatcttgcttgtgggaagggtggcgatctcatcaaatgggataaagcaaagattggatattacgttggtattgatatcgccgatggttcaatagaagactgccggactcgttacaatggtgaggcagatcatcatcagcggcgcaaaaagttctcatttcctgccagactcctgtgtggagattgttatgaggttcgcttggatagggttttagcagatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="82780" stop="79366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82480" g_stop="82361" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82360" i_stop="81530" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81529" g_stop="81240" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="410" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81239" i_stop="81168" i_length="72">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81167" g_stop="81099" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="479" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81098" i_stop="80984" i_length="115">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80983" g_stop="80912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="551" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80911" i_stop="80080" i_length="832">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80079" g_stop="79978" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="653" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79977" i_stop="79697" i_length="281">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79696" g_stop="79666" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="684" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E302618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82480" e_stop="82361"/>
          <exon e_start="81529" e_stop="81240"/>
          <exon e_start="81167" e_stop="81099"/>
          <exon e_start="80983" e_stop="80912"/>
          <exon e_start="80079" e_stop="79978"/>
          <exon e_start="79696" e_stop="79666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGATTTGTTCATAATCTATACTGATTGTGCTTCAAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAGGTATATTGTCATCTTCTTTGTTTTTATTATCTTTTCTTGGAATTATATGGATAGAGCATGCTGAAGTTAGAGACTTTACTTGTATTTTAGCTAAATCCAGATGGTAATTTTTTGTTTTCAAAAGACCCCATTTGGGATTTACCTAATTTGGTGTAGATGGATATATGCATATTCGTTTTGTTTATTGAATGAGTACATGTAAAATTAGAAACTTTACTTGTGCATAAGCACAACCCAGAAGGGAATTTTGTAATATTTACTTGTAAGACAAATTCACGCATTTCTTTGTATAGATAGATATGAATACAACATATTTGTTCATTGCTGTGTTTGTTCTTGTTTTATTAACTGTGGTGTCGGGGTTAGCTTGGGCGTAAATTGACGTGATACTAGTCACTGGCTACCAGCACGTGTAATAGGTATCGGGAAATTCCATGTGATACTAGCCACCGGCTACCAGTAACGTGTAACAGGTATCAGGTGACTCCGTTGCTAGGACAGATGGAAAGAAATCACCTAGTGTTTTTTTTTATCTGTAATGAGATTGAGACCTTTCAGTTTCACTTCATTGACAACTAGGCCACACTGTCGGATGCCCGTGAAGTTAGAGAACTACTGCTTTTTTTAAAGCATAACCTAGAAGAGATTTTTCTCATGTTTTTATTTAATAGTAACTGCTTTTGATTTTCATTATCTGTCACCGGTATAGAAATAGATATAACATATTTGTTCATTGTTGCATTAGTTAGTAATAAGAAGGATACTGTTATTTTCGCTGCTTAAGTGTTCTGCTACAATTATTGTAATGTCTGAATTTTATTTACGATGCAGGGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGGGTATGTCTTTTTTATTCATAGGCGGGGTTATTCTGCGTAGTCCATTGCTAATGAGGCTTTCTGGCTTGTTAGATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAGGTACTTTTTCCTTATTTTACACCCCAATTATCTGGCAGCAGCGAGCTGTTAGAATTTCTAGGTGGTAATTAACCAAGTAGCCATGCATCTTATTCTCACTTTCTGTTTGAACCAGGGTGGCGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATCGCCGATGGTTCAGTAAGTTCCTGCTGGATGAATACATTTTTTGGTGTTTTTGTGCTTGCCACTGCAAGTCAGATCTCCCTTTCAGCAAGATATTTACATGCTTAGCAATTTGTATGGCTTTCTAGAAGATGCTTTTTATCAGTACTTAGATATTTTGCAGTTAAACATTATTAAATGTTATTAACCGAACATCTGAAGGTTTACTATGCGATTCAGCTGTTAGAGTGGTGCTTGCAGTGAAGTATACTATAACAAGTATTCTAGGGGGCCGTTTGGCCATGTGAGATGAAATCATATGTGATGAAGTTGAAGTTTTGTTTGGACATGCAACTTGGTTGTGGTTAAAACATAAAAAACTTTCAAAACTACCCCAATTTTTTTTATAGTATCTTACTGGATAAGTTGAAGTTTATAACAAAAGTTTAATACACTATAACAAAGTTATTGAGTTGCTATTTAACTTCAGGGGAATGTTGATCAAATTTTTGTCTGTCTTTTAATTGGAGGTTAATCTGGATATTAACTCAAAGAGAAGGCCACAAAAGCTTTCTTGAATTCTAACTTGTTGACATCAATACTAAATGATTCAGGCATAGGAGATGCTGGCATTTCTTAATTGAGTCCTCCATTCTGTAGATTTACATGCTAGGTTTCTTCCTTTATTTGCGGGAATGAATATCCATCTCATAGAATGTTATATTACTCTATTTTTCTTTTGACCAAGTAAAATAATTATATTCCTCTCTATATTTATGTTAAATTCTAGTTTTTGAGGTCTATTTTTATTTTCTATTGTATTTGAGTGCTACCCTGACTTTTGATATTATTCTTAAATTATGTAAAGATAGAAGACTGCCGGACTCGTTACAATGGTGAGGCAGATCATCATCAGCGGCGCAAAAAGTTCTCATTTCCTGCCAGACTCCTGTGTGGAGATTGTTATGAGGTAAATCAGTCACATGATTGATCAAGTTTTCTCATTCTTTCAGATGGAACTGAAATTTTTTTATCTTTTTGTTGCTTTTTTTTTTTCGTGTTGTAAAGATTATTATGGATGTATGATGAATCATTTACTAGACGTACAATGACCTTAGATATCATGTCATTAGCTGGATGTGTAGTGATGATCAATATATGGTTAAATCCACTGATAATCCAAACAGCTGCATGCTTTTATTGAAACATCAAGGCGGATGATTCTACTGATATCTTGTGTGGGAATTTCAGGTTCGCTTGGATAGGGTTTTAGCAGATGATG</genome_strand>
        <mrna_strand>TGCAGATTTGTTCATAATCTATACTGATTGTGCTTCAAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGG........................................................................ATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAG...................................................................................................................GGTGGCGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATCGCCGATGGTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAGACTGCCGGACTCGTTACAATGGTGAGGCAGATCATCATCAGCGGCGCAAAAAGTTCTCATTTCCTGCCAGACTCCTGTGTGGAGATTGTTATGAG.........................................................................................................................................................................................................................................................................................GTTCGCTTGGATAGGGTTTTAGCAGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E560178" ref_strand="+" ref_description="SGN-E560178 [19791]">
      <seq>cttataaggtggatgaacaaaagtgtctttgacaaatcaaatactttcccttcactaattccttgttcttctctcactgttttatagcttagtgttccagatttgttcataatccatactgttgtacttgttggttcttaaattatgaagagaagttactctgaatctccatcttcgagttcttatggacctccacaatccaaatttaagcataacccagaagggtagttgtttaactgctaggggcgatgtattatgccataaataattgaacttctgatgctaaactttaggaagttgtaacctttttggataaagaagccagaagttggttttctattgcggtttgattaaaagtttgaactggtgtcaggcgacactcattttctggaagatgagagtacaaaaatctttgccaggaaggtggctgatcattacagtgcgaggaccaatcaaactcttgaagagcgcgaagcaagtcctatcatccatttaaagaaacttaataattggatcaagagtgtcttgattcagctttatacgaaaagaggggatgcagttcttgatcttgcttgtgggaagggtggtgatctcatcaaatgggataaagcaaagattggatattacgttggtattgatattgccgatggttcaatagaagactgccggacccgttaccaatggtgaggcagatcaccatcaagcgacgcaaaaagttctcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="82870" stop="79711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82574" g_stop="82361" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82360" i_stop="81530" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81529" g_stop="81240" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="513" r_length="290" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81239" i_stop="81168" i_length="72">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81167" g_stop="81099" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="582" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81098" i_stop="80984" i_length="115">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80983" g_stop="80912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="654" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80911" i_stop="80080" i_length="832">
            <donor d_prob="0.841" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80079" g_stop="80011" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="725" r_length="71" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E560178" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82574" e_stop="82361"/>
          <exon e_start="81529" e_stop="81240"/>
          <exon e_start="81167" e_stop="81099"/>
          <exon e_start="80983" e_stop="80912"/>
          <exon e_start="80079" e_stop="80011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTAAGGTCGA-GAAGAAAGGTGTCTTTGACAAATCAAATACTTTCCCTTCACTAATTCCTTCTTCTTCTCTCACTGTTTTATAGCTTAGTGTTGCAGATTTGTTCATAATCTATAC---TG-A-TTG-TGCTTC--AAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAGGTATATTGTCATCTTCTTTGTTTTTATTATCTTTTCTTGGAATTATATGGATAGAGCATGCTGAAGTTAGAGACTTTACTTGTATTTTAGCTAAATCCAGATGGTAATTTTTTGTTTTCAAAAGACCCCATTTGGGATTTACCTAATTTGGTGTAGATGGATATATGCATATTCGTTTTGTTTATTGAATGAGTACATGTAAAATTAGAAACTTTACTTGTGCATAAGCACAACCCAGAAGGGAATTTTGTAATATTTACTTGTAAGACAAATTCACGCATTTCTTTGTATAGATAGATATGAATACAACATATTTGTTCATTGCTGTGTTTGTTCTTGTTTTATTAACTGTGGTGTCGGGGTTAGCTTGGGCGTAAATTGACGTGATACTAGTCACTGGCTACCAGCACGTGTAATAGGTATCGGGAAATTCCATGTGATACTAGCCACCGGCTACCAGTAACGTGTAACAGGTATCAGGTGACTCCGTTGCTAGGACAGATGGAAAGAAATCACCTAGTGTTTTTTTTTATCTGTAATGAGATTGAGACCTTTCAGTTTCACTTCATTGACAACTAGGCCACACTGTCGGATGCCCGTGAAGTTAGAGAACTACTGCTTTTTTTAAAGCATAACCTAGAAGAGATTTTTCTCATGTTTTTATTTAATAGTAACTGCTTTTGATTTTCATTATCTGTCACCGGTATAGAAATAGATATAACATATTTGTTCATTGTTGCATTAGTTAGTAATAAGAAGGATACTGTTATTTTCGCTGCTTAAGTGTTCTGCTACAATTATTGTAATGTCTGAATTTTATTTACGATGCAGGGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGGGTATGTCTTTTTTATTCATAGGCGGGGTTATTCTGCGTAGTCCATTGCTAATGAGGCTTTCTGGCTTGTTAGATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAGGTACTTTTTCCTTATTTTACACCCCAATTATCTGGCAGCAGCGAGCTGTTAGAATTTCTAGGTGGTAATTAACCAAGTAGCCATGCATCTTATTCTCACTTTCTGTTTGAACCAGGGTGGCGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATCGCCGATGGTTCAGTAAGTTCCTGCTGGATGAATACATTTTTTGGTGTTTTTGTGCTTGCCACTGCAAGTCAGATCTCCCTTTCAGCAAGATATTTACATGCTTAGCAATTTGTATGGCTTTCTAGAAGATGCTTTTTATCAGTACTTAGATATTTTGCAGTTAAACATTATTAAATGTTATTAACCGAACATCTGAAGGTTTACTATGCGATTCAGCTGTTAGAGTGGTGCTTGCAGTGAAGTATACTATAACAAGTATTCTAGGGGGCCGTTTGGCCATGTGAGATGAAATCATATGTGATGAAGTTGAAGTTTTGTTTGGACATGCAACTTGGTTGTGGTTAAAACATAAAAAACTTTCAAAACTACCCCAATTTTTTTTATAGTATCTTACTGGATAAGTTGAAGTTTATAACAAAAGTTTAATACACTATAACAAAGTTATTGAGTTGCTATTTAACTTCAGGGGAATGTTGATCAAATTTTTGTCTGTCTTTTAATTGGAGGTTAATCTGGATATTAACTCAAAGAGAAGGCCACAAAAGCTTTCTTGAATTCTAACTTGTTGACATCAATACTAAATGATTCAGGCATAGGAGATGCTGGCATTTCTTAATTGAGTCCTCCATTCTGTAGATTTACATGCTAGGTTTCTTCCTTTATTTGCGGGAATGAATATCCATCTCATAGAATGTTATATTACTCTATTTTTCTTTTGACCAAGTAAAATAATTATATTCCTCTCTATATTTATGTTAAATTCTAGTTTTTGAGGTCTATTTTTATTTTCTATTGTATTTGAGTGCTACCCTGACTTTTGATATTATTCTTAAATTATGTAAAGATAGAAGACTGCCGGACTCGTTA-CAATGGTGAGGCAGATCATCATC-AGCGGCGCAAAAAGTTCTCATTT</genome_strand>
        <mrna_strand>CTTATAAGGTGGATGAACAAAAGTGTCTTTGACAAATCAAATACTTTCCCTTCACTAATTCCTTGTTCTTCTCTCACTGTTTTATAGCTTAGTGTTCCAGATTTGTTCATAATCCATACTGTTGTACTTGTTGGTTCTTAAATTATGAAGAGAAGTTACTCTGAATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGTTGTTTAACTGCTAGGGGCGATGTATTATGCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAGGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGG........................................................................ATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAG...................................................................................................................GGTGGTGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATTGCCGATGGTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAGACTGCCGGACCCGTTACCAATGGTGAGGCAGATCACCATCAAGCGACGCAAAAAGTTCTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E412460" ref_strand="+" ref_description="SGN-E412460 [STM-16-G4]">
      <seq>cgaatccgaaagggcttataaggccgatgaacaaaagtgtctttgacaaatcaaatactttcccttcactaattccttgttcttctctcactgttttatagcttagtgttccagatttgttcataatccatactgttgtacttgttggttcttaaattatgaagagaagttactcagaatctccatcttcgagttcttatggacctccacaatccaaatttaagcataacccagaaggcgacactcattttctggaagatgagagtacaaaaatctttgccaggaaggtggctgatcattacagtgcgaggaccaatcaaactcttgaagagcgcgaagcaagtcctatcatccatttaaagaaacttaataattggatcaagagtgtcttgattcagctttatacgaaaagaggggatgcaggtcttgatcttgcttgtgggaagggtggtgatctcatcaaatgggataaagcaaagattggatattacgttggtattgatattgccgatggttcaatagaagactgccggacccgttacaatggtgaggcagatcaccatcagcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="82870" stop="79728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82573" g_stop="82361" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="237" r_length="222" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82360" i_stop="81380" i_length="981">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.521" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81379" g_stop="81240" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="377" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81239" i_stop="81168" i_length="72">
            <donor d_prob="0.802" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81167" g_stop="81099" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="446" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81098" i_stop="80984" i_length="115">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80983" g_stop="80912" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="518" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80911" i_stop="80080" i_length="832">
            <donor d_prob="0.841" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80079" g_stop="80028" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="570" r_length="52" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E412460" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82573" e_stop="82361"/>
          <exon e_start="81379" e_stop="81240"/>
          <exon e_start="81167" e_stop="81099"/>
          <exon e_start="80983" e_stop="80912"/>
          <exon e_start="80079" e_stop="80028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAAGGTCGA-GAAGAAAGGTGTCTTTGACAAATCAAATACTTTCCCTTCACTAATTCCTTCTTCTTCTCTCACTGTTTTATAGCTTAGTGTTGCAGATTTGTTCATAATCTATAC---TG-A-TTG-TGCTTC--AAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAGGTATATTGTCATCTTCTTTGTTTTTATTATCTTTTCTTGGAATTATATGGATAGAGCATGCTGAAGTTAGAGACTTTACTTGTATTTTAGCTAAATCCAGATGGTAATTTTTTGTTTTCAAAAGACCCCATTTGGGATTTACCTAATTTGGTGTAGATGGATATATGCATATTCGTTTTGTTTATTGAATGAGTACATGTAAAATTAGAAACTTTACTTGTGCATAAGCACAACCCAGAAGGGAATTTTGTAATATTTACTTGTAAGACAAATTCACGCATTTCTTTGTATAGATAGATATGAATACAACATATTTGTTCATTGCTGTGTTTGTTCTTGTTTTATTAACTGTGGTGTCGGGGTTAGCTTGGGCGTAAATTGACGTGATACTAGTCACTGGCTACCAGCACGTGTAATAGGTATCGGGAAATTCCATGTGATACTAGCCACCGGCTACCAGTAACGTGTAACAGGTATCAGGTGACTCCGTTGCTAGGACAGATGGAAAGAAATCACCTAGTGTTTTTTTTTATCTGTAATGAGATTGAGACCTTTCAGTTTCACTTCATTGACAACTAGGCCACACTGTCGGATGCCCGTGAAGTTAGAGAACTACTGCTTTTTTTAAAGCATAACCTAGAAGAGATTTTTCTCATGTTTTTATTTAATAGTAACTGCTTTTGATTTTCATTATCTGTCACCGGTATAGAAATAGATATAACATATTTGTTCATTGTTGCATTAGTTAGTAATAAGAAGGATACTGTTATTTTCGCTGCTTAAGTGTTCTGCTACAATTATTGTAATGTCTGAATTTTATTTACGATGCAGGGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGGGTATGTCTTTTTTATTCATAGGCGGGGTTATTCTGCGTAGTCCATTGCTAATGAGGCTTTCTGGCTTGTTAGATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAGGTACTTTTTCCTTATTTTACACCCCAATTATCTGGCAGCAGCGAGCTGTTAGAATTTCTAGGTGGTAATTAACCAAGTAGCCATGCATCTTATTCTCACTTTCTGTTTGAACCAGGGTGGCGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATCGCCGATGGTTCAGTAAGTTCCTGCTGGATGAATACATTTTTTGGTGTTTTTGTGCTTGCCACTGCAAGTCAGATCTCCCTTTCAGCAAGATATTTACATGCTTAGCAATTTGTATGGCTTTCTAGAAGATGCTTTTTATCAGTACTTAGATATTTTGCAGTTAAACATTATTAAATGTTATTAACCGAACATCTGAAGGTTTACTATGCGATTCAGCTGTTAGAGTGGTGCTTGCAGTGAAGTATACTATAACAAGTATTCTAGGGGGCCGTTTGGCCATGTGAGATGAAATCATATGTGATGAAGTTGAAGTTTTGTTTGGACATGCAACTTGGTTGTGGTTAAAACATAAAAAACTTTCAAAACTACCCCAATTTTTTTTATAGTATCTTACTGGATAAGTTGAAGTTTATAACAAAAGTTTAATACACTATAACAAAGTTATTGAGTTGCTATTTAACTTCAGGGGAATGTTGATCAAATTTTTGTCTGTCTTTTAATTGGAGGTTAATCTGGATATTAACTCAAAGAGAAGGCCACAAAAGCTTTCTTGAATTCTAACTTGTTGACATCAATACTAAATGATTCAGGCATAGGAGATGCTGGCATTTCTTAATTGAGTCCTCCATTCTGTAGATTTACATGCTAGGTTTCTTCCTTTATTTGCGGGAATGAATATCCATCTCATAGAATGTTATATTACTCTATTTTTCTTTTGACCAAGTAAAATAATTATATTCCTCTCTATATTTATGTTAAATTCTAGTTTTTGAGGTCTATTTTTATTTTCTATTGTATTTGAGTGCTACCCTGACTTTTGATATTATTCTTAAATTATGTAAAGATAGAAGACTGCCGGACTCGTTACAATGGTGAGGCAGATCATCATCAGCGGC</genome_strand>
        <mrna_strand>TTATAAGGCCGATGAACAAAAGTGTCTTTGACAAATCAAATACTTTCCCTTCACTAATTCCTTGTTCTTCTCTCACTGTTTTATAGCTTAGTGTTCCAGATTTGTTCATAATCCATACTGTTGTACTTGTTGGTTCTTAAATTATGAAGAGAAGTTACTCAGAATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAGGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGG........................................................................ATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGGTCTTGATCTTGCTTGTGGGAAG...................................................................................................................GGTGGTGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATTGCCGATGGTTCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAGACTGCCGGACCCGTTACAATGGTGAGGCAGATCACCATCAGCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E245294" ref_strand="+" ref_description="SGN-E245294 [cLEF-44-N14]">
      <seq>tttcccttcactaattccttcttcttctctcactgttttatagcttagtgttgcagatttgttcataatctatactgattgtgcttcaaattatgaagagaagttactcaggatctccatcttcgagttcttatggacctccacaatccaaatttaagcataacccagaagggtagttttttaactgctaggggcgatgtattatcccataaataattgaacttctgatgctaaactttaggaagttgtaacctttttggataaagaagccagaagttggttttctattgcggtttgattaaaagtttgaactggtgtcaggcgacactcattttctggaagatgagagtacaaaaatctttgccaggaaagtggctgatcattacagtgcgaggaccaatcaaactcttgaagagcgcgaagcaagtcctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="82831" stop="80967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82531" g_stop="82361" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82360" i_stop="81530" i_length="831">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81529" g_stop="81267" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="434" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E245294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82531" e_stop="82361"/>
          <exon e_start="81529" e_stop="81267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCTTCACTAATTCCTTCTTCTTCTCTCACTGTTTTATAGCTTAGTGTTGCAGATTTGTTCATAATCTATACTGATTGTGCTTCAAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAGGTATATTGTCATCTTCTTTGTTTTTATTATCTTTTCTTGGAATTATATGGATAGAGCATGCTGAAGTTAGAGACTTTACTTGTATTTTAGCTAAATCCAGATGGTAATTTTTTGTTTTCAAAAGACCCCATTTGGGATTTACCTAATTTGGTGTAGATGGATATATGCATATTCGTTTTGTTTATTGAATGAGTACATGTAAAATTAGAAACTTTACTTGTGCATAAGCACAACCCAGAAGGGAATTTTGTAATATTTACTTGTAAGACAAATTCACGCATTTCTTTGTATAGATAGATATGAATACAACATATTTGTTCATTGCTGTGTTTGTTCTTGTTTTATTAACTGTGGTGTCGGGGTTAGCTTGGGCGTAAATTGACGTGATACTAGTCACTGGCTACCAGCACGTGTAATAGGTATCGGGAAATTCCATGTGATACTAGCCACCGGCTACCAGTAACGTGTAACAGGTATCAGGTGACTCCGTTGCTAGGACAGATGGAAAGAAATCACCTAGTGTTTTTTTTTATCTGTAATGAGATTGAGACCTTTCAGTTTCACTTCATTGACAACTAGGCCACACTGTCGGATGCCCGTGAAGTTAGAGAACTACTGCTTTTTTTAAAGCATAACCTAGAAGAGATTTTTCTCATGTTTTTATTTAATAGTAACTGCTTTTGATTTTCATTATCTGTCACCGGTATAGAAATAGATATAACATATTTGTTCATTGTTGCATTAGTTAGTAATAAGAAGGATACTGTTATTTTCGCTGCTTAAGTGTTCTGCTACAATTATTGTAATGTCTGAATTTTATTTACGATGCAGGGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATC</genome_strand>
        <mrna_strand>TTTCCCTTCACTAATTCCTTCTTCTTCTCTCACTGTTTTATAGCTTAGTGTTGCAGATTTGTTCATAATCTATACTGATTGTGCTTCAAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E334202" ref_strand="-" ref_description="SGN-E334202 [cTOD-21-N11]">
      <seq>attaagtatctatacaagtacaacgtgtttcaaattggattcattgttttagctggtctgacatttgtttactatgctgcctttgggtggagaaggaaaaagcctagtgggaggttccagctctccagttaaaggttttgattggatagcagtgcacgtatctgaccgtatttgagacttactctggtctatcactaatgttgaggctttgaactgtggtgtatgttgcctagttttgtttcatattattggaggaggcaacaccactaaatttgatttttacagtggaagttggatgttggcgactctgtactactgctgctgctgcttgccactgttcctgctgctgttaatttagttttttccttaattccaccttctgtatgtatcatttgtttggtaatgtttaatcatttgtttgggcatgtcgtcatttaaatgcttggtttgagatttgtccttgatgtatcatatagtcattatataccaaaatttcttggatgcttgtatatttactgtgaactcttttatatacgtttcgagcctaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="85402" stop="84081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85102" g_stop="85086" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85085" i_stop="84997" i_length="89">
            <donor d_prob="0.855" d_score="0.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84996" g_stop="84930" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="84" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84929" i_stop="84849" i_length="81">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84848" g_stop="84382" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="551" r_length="467" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="582"/>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E334202" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334202" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="85102" e_stop="85086"/>
          <exon e_start="84996" e_stop="84930"/>
          <exon e_start="84848" e_stop="84382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGTATCTATACAAGTAAGTTCCTGTTGTTTGTAGATATTCACCAAGAACTGATTTTCTGGCTGCAAGAATCATGTTATGAACGGGGAAAGATGTCTTTGCAGGTACAACGTGTTTCAAATTGGATTCATTGTTTTAGCTGGTCTGACATTTGTTTACTATGCTGCCTTTGTAAGTCTCTGTTACTGTCTTGACATCTTAAATCCTTGCCTTTAAGATGGAGGAGAAATTAAACAATTTTCAACTTTGCAGGGGTGGAGAAGGAAAAAGCCTAGTGGGAGGTTCCAGCTCTCCAGTTAAAGGTTTTGATTGGATAGCAGTGCACGTATCTGACCGTATTTGAGACTTACTCTGGTCTATCACTAATGTTGAGGCTTTGAACTGTGGTGTATGTTGCCTAGTTTTGTTTCATATTATTGGAGGAGGCAACACCACTAAATTTGATTTCTACAGTGGAAGTTGGATGTTGGCGACTCTGTACTACTGCTGCTGCTGCTTGCCACTGTTCCTGCTGCTGTTAATTTAGTTTTTTCCTTAATTCCACCTTCTGTATGTATCATTTGTTTGGTAATGTTTAATCATTTGTTTGGGCATGTCGTCATCTAAATGCTTGGTTTGAGATTTGTCCTTGATGTATCATATAGTCATTATATACCAAAATTTCTTGGATGCTTGTATATTTACTGTGAACTCTTTTATATACGTTTCGAGCCTAGGAG</genome_strand>
        <mrna_strand>ATTAAGTATCTATACAA.........................................................................................GTACAACGTGTTTCAAATTGGATTCATTGTTTTAGCTGGTCTGACATTTGTTTACTATGCTGCCTTT.................................................................................GGGTGGAGAAGGAAAAAGCCTAGTGGGAGGTTCCAGCTCTCCAGTTAAAGGTTTTGATTGGATAGCAGTGCACGTATCTGACCGTATTTGAGACTTACTCTGGTCTATCACTAATGTTGAGGCTTTGAACTGTGGTGTATGTTGCCTAGTTTTGTTTCATATTATTGGAGGAGGCAACACCACTAAATTTGATTTTTACAGTGGAAGTTGGATGTTGGCGACTCTGTACTACTGCTGCTGCTGCTTGCCACTGTTCCTGCTGCTGTTAATTTAGTTTTTTCCTTAATTCCACCTTCTGTATGTATCATTTGTTTGGTAATGTTTAATCATTTGTTTGGGCATGTCGTCATTTAAATGCTTGGTTTGAGATTTGTCCTTGATGTATCATATAGTCATTATATACCAAAATTTCTTGGATGCTTGTATATTTACTGTGAACTCTTTTATATACGTTTCGAGCCTAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E577670" ref_strand="-" ref_description="SGN-E577670 [LE15BF04]">
      <seq>cggagctatgatgattggcttgagattagtttttgttacgattcacccaatgaagtggggagctacgctcatgaactcctttcttttcaatgtgggccttattcttctttgctccatcagtgtcattcagttctgcgccacggcctttgcatactatgctcaagccactgcagctcaagaaatatttggtcacaatctgcaatctcttcgtggaattaagtatctatacaagtacaacgtgtttcaaattggattcattgttttagctggtctgacatttgtttactatgctgcctttgggtggagaaggaaaaagcctagtgggaggttccagctctccagttaaaggttttgattggatagcagtgcacgtatctgaccgtatttgagacttactctggtctatcactaatgttgaggctttgaactgtggtgtatgttgcctagttttgtttcatattattggaggaggcaacaccactaaatttgatttctacagtggaagttggatgttggcgactctgtactactgctgctgctgcttgccactgttcctgctgctgttaatttagttttttccttaattccaccttctgtatgtatcatttgtttggtaatgtttaatcatttgtttgggcatgtcgtcatctaaatgcttggtttgagatttgtccttgatgtatcatatagtcattatataccaaaatttcttggatgcttgtataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="86385" stop="84122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86085" g_stop="86032" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86031" i_stop="85925" i_length="107">
            <donor d_prob="0.695" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85924" g_stop="85859" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="120" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85858" i_stop="85197" i_length="662">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.851" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85196" g_stop="85086" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="231" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85085" i_stop="84997" i_length="89">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84996" g_stop="84930" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="298" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84929" i_stop="84849" i_length="81">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84848" g_stop="84416" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="731" r_length="433" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E577670" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577670" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86085" e_stop="86032"/>
          <exon e_start="85924" e_stop="85859"/>
          <exon e_start="85196" e_stop="85086"/>
          <exon e_start="84996" e_stop="84930"/>
          <exon e_start="84848" e_stop="84416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGCTATGATGATTGGCTTGAGATTAGTTTTTGTTACGATTCACCCAATGAAGTAAATTTCTTCTGCTGTTTGAAATTATACTTTATTGAATTTGTTTGCCACCTGCTTTGCTCCTCTGTCTCCCCTGACTCACTGCTGTGCTACACCACTATTTACAGGTGGGGAGCTACGCTCATGAACTCCTTTCTTTTCAATGTGGGCCTTATTCTTCTTTGCTCCATCAGGTAGGATTAACTCTACACTGTTCTATTTTTCTTAATGATGAATATCTGAAGGACAAATGCTTAGACCACTGATATTGGGACACTTTGGGTTGTCCATGCAAATAGTGAAGTATTTAATGTACCAGCTAGGATTCAATTTATTGGGTAGTTGAGTGGTGATGTTTGGCTGAAGTGAGGCATGAAGCAACATGCTAAATCAGTTCCTCCAGGTTATGGCCTGATACTACAAAAGAAGCAGCCTGCTTCTTATACGGTCTTGATCTCACTGGGCAATTATTGTTGTAGCTTTGATCTTACTTGGGGGTATTGTGGTTCTAGACCATTTACTAGTTAAACCATATGTAGGCAACTACGGAAAGGAAAGCAAGGATTCCACTGACAGCCGACAGGATATCCTGAACTTCCTTGCTGAATTTATGAGGCATTTGTTATAAGGACGTGCTTGCCCCCTTATTATTTCTAAATAAAAAACAGATAGCTTCATCTACTTTGTTGGATAATGGTTCCATGTATTAAATACTTTGCTGAGGTGATAGGTGGTATATAGAACATGAAATTCGAGGATGACCAATCTGCAGTATTTGGGTTGATAACCACCTTTCTTCTGCTTCCACCTGGTGTAAAAGTTCGGTAGTATGAGCTTTTGTTTTCTGCGCTTGCAGTGTCATTCAGTTCTGCGCCACGGCCTTTGCATACTATGCTCAAGCCACTGCAGCTCAAGAAATATTTGGTCACAATCTGCAATCTCTTCGTGGAATTAAGTATCTATACAAGTAAGTTCCTGTTGTTTGTAGATATTCACCAAGAACTGATTTTCTGGCTGCAAGAATCATGTTATGAACGGGGAAAGATGTCTTTGCAGGTACAACGTGTTTCAAATTGGATTCATTGTTTTAGCTGGTCTGACATTTGTTTACTATGCTGCCTTTGTAAGTCTCTGTTACTGTCTTGACATCTTAAATCCTTGCCTTTAAGATGGAGGAGAAATTAAACAATTTTCAACTTTGCAGGGGTGGAGAAGGAAAAAGCCTAGTGGGAGGTTCCAGCTCTCCAGTTAAAGGTTTTGATTGGATAGCAGTGCACGTATCTGACCGTATTTGAGACTTACTCTGGTCTATCACTAATGTTGAGGCTTTGAACTGTGGTGTATGTTGCCTAGTTTTGTTTCATATTATTGGAGGAGGCAACACCACTAAATTTGATTTCTACAGTGGAAGTTGGATGTTGGCGACTCTGTACTACTGCTGCTGCTGCTTGCCACTGTTCCTGCTGCTGTTAATTTAGTTTTTTCCTTAATTCCACCTTCTGTATGTATCATTTGTTTGGTAATGTTTAATCATTTGTTTGGGCATGTCGTCATCTAAATGCTTGGTTTGAGATTTGTCCTTGATGTATCATATAGTCATTATATACCAAAATTTCTTGGATGCTTGTATATTTACT</genome_strand>
        <mrna_strand>CGGAGCTATGATGATTGGCTTGAGATTAGTTTTTGTTACGATTCACCCAATGAA...........................................................................................................GTGGGGAGCTACGCTCATGAACTCCTTTCTTTTCAATGTGGGCCTTATTCTTCTTTGCTCCATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTCAGTTCTGCGCCACGGCCTTTGCATACTATGCTCAAGCCACTGCAGCTCAAGAAATATTTGGTCACAATCTGCAATCTCTTCGTGGAATTAAGTATCTATACAA.........................................................................................GTACAACGTGTTTCAAATTGGATTCATTGTTTTAGCTGGTCTGACATTTGTTTACTATGCTGCCTTT.................................................................................GGGTGGAGAAGGAAAAAGCCTAGTGGGAGGTTCCAGCTCTCCAGTTAAAGGTTTTGATTGGATAGCAGTGCACGTATCTGACCGTATTTGAGACTTACTCTGGTCTATCACTAATGTTGAGGCTTTGAACTGTGGTGTATGTTGCCTAGTTTTGTTTCATATTATTGGAGGAGGCAACACCACTAAATTTGATTTCTACAGTGGAAGTTGGATGTTGGCGACTCTGTACTACTGCTGCTGCTGCTTGCCACTGTTCCTGCTGCTGTTAATTTAGTTTTTTCCTTAATTCCACCTTCTGTATGTATCATTTGTTTGGTAATGTTTAATCATTTGTTTGGGCATGTCGTCATCTAAATGCTTGGTTTGAGATTTGTCCTTGATGTATCATATAGTCATTATATACCAAAATTTCTTGGATGCTTGTATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E545992" ref_strand="+" ref_description="SGN-E545992 [TUS-69-C1]">
      <seq>tgttggcattgcttgtctccctttgggacttatattttcgttcatcaggcgtccaaaggctgttattacacggtcacagtatatcaaggaagctaccgagcttggtaaaaaagcgaaagatgaagaaagcaactgatgcacttcatcaagaagaaaggagcgggagtaagggaagaaaatggcggaagaatgtaaaggcagtcgaaaaggaggtgcttcttcttgaagatgatgtcaaggcgctagaggaaatgtatcctcaaggtgaaaaggctgagactgcttgggcaatgacagttctaggttatttggcaaaactcatcctaggtgttttagggctgattgtctctgtagcttgggttgcccatatcgtgatatatcttctgattgatcctccactttcttctttcctcaatgaggttttcatcaaactagatgatatttggggtctcttgggcactgcagcttttgcatttttttgcttctaccttctgcttgcagtgattgctggagctatgatgattggcttgagattagtttttgttacgattcacccaatgaagtgnggagctacgctcatgaactcttttcttttcaatgtgggccttattcttctttgctccatcagtgtcattcagttctgcgccacagcctttgcatactatgctcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="88418" stop="84852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88118" g_stop="88031" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88030" i_stop="87916" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87915" g_stop="87793" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="209" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87792" i_stop="86688" i_length="1105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86687" g_stop="86625" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="272" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86624" i_stop="86521" i_length="104">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86520" g_stop="86456" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="337" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86455" i_stop="86349" i_length="107">
            <donor d_prob="0.801" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86348" g_stop="86239" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="447" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86238" i_stop="86147" i_length="92">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86146" g_stop="86032" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="562" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86031" i_stop="85925" i_length="107">
            <donor d_prob="0.695" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85924" g_stop="85859" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="628" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="85858" i_stop="85197" i_length="662">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.851" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="85196" g_stop="85152" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="673" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E545992" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88118" e_stop="88031"/>
          <exon e_start="87915" e_stop="87793"/>
          <exon e_start="86687" e_stop="86625"/>
          <exon e_start="86520" e_stop="86456"/>
          <exon e_start="86348" e_stop="86239"/>
          <exon e_start="86146" e_stop="86032"/>
          <exon e_start="85924" e_stop="85859"/>
          <exon e_start="85196" e_stop="85152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGCATTGCTTGTCTCCCGTTGGGACTTATATTTTCGTTCATCAGGCGTCCAAAGGCTGTTATTACACGGTCACAGTATATCAAGGTATTTTCTTCTGTTAGAAGCTCTTTGCATATGATCCTGATCAGATGTTTAAAATAAAATAAAGGTATATACGCTGGTGTCATGGCTCATGATGCTTAACTTTGATTTTGTATAGGAAGCTACCGAGCTTGGTAAAAGAGCGAAAGAATTGAAGAAAGCAACTGATGCACTTCATCAAGAAGAAAGGAGCGGGAGTAAGGGAAGAAAATGGCGGAAGAATGTGAAGGCAGTCGAAAAGGTATATCTTGTTTCTCATCATGGTTTCTTTGAATGTTTTTTTCATTTTAGCACTATGTTACATATAAGGTGAACTTAAAAATGGAATGTTTTAGAGCCACTCGAGGGTGTGGTTAGTGGTCAATGAAGTGGAGGAGAACCTAAGGTCTTAGGTCTAAATTCTTGGCAAAAGAATAGGCAATTGTCTCTTATGCGTAAGCCTTGGTGGATAGAATTACCAAGGCTGGTGGGAGGTAAAAGGTACCTGGTGGAATAGTCAACATGCAAGCAAGTTGGCTGGGATATCTTCATCCCAACAGAAGGAATGTTTTAGACAATAAACAAAAATATATAAGCAAATCGCACTGTCATGTTGATCATTGCATTTCATTGCATAATTATTATTGTAGAATATCTAGAAGTAAAGGTACATTTGTCTTTGCACCCAACAATGTGGCCTAGTGGTCAATGAAGTTGGTTAGAATCATGAGGTCTGAGTTCAATGTTCAAATCCCAACGGAGGCAAAATCACTAGGCAATTTTTTCTATTTGTCCAAGTCCTCTTGATGGATAGAGGTACCTGCTACCCCGTAGAATTAGTCGAGGTGTGCACATGTTGCCCAGACCACCATGGTCGTCCAAAAAAGATACTTGTGTCTTTTTTAGTAAATGAAACATGCTATAAATATCATCTGTTATGTTAAGTAGGAAAAAGAGGTGGGATGTAAGGTGATAATCATTGTTCAAGTGGCCATTATACATTTTATGAAATTTGAAAATAAAAACAAATAAATAGAACTTTTTATAAGTTCAGCTTGATGCTTCTCCTGCAAAGGCATGAATAAACCATGCTATGCTATTTTAATATGATCAATTGATGTTCATAACCTGTGTATGCAAGTGAAACTCCTCTTGATATGCATGATCCATTGTCCTCGAAATTCTACATTGAAGTTATTGATGATTTTATCTCAGACCTCATGTCAATTTTATCTCTCTTATCTTAGGATGTTGGATGAAGATTCTGTTTTCTTGTCAGATTAATATATCAAGAAATGAATAAACTGAAAAGTACTGGTTTGTTTTTATGTTAGTGTGATAAAATAATTTTTTGTTTTACCTTGCAGGAGGTGCTTCTTCTTGAAGACGATGTCAAGGCGCTAGAGGAAATGTATCCTCAAGGTGAAAAGGTAATGAGATGTGCTTTTATACTTGGCCGCCTAAAATCTTATTTTTCACACCTTGCCAAAGTAATTTTGTTGAGCAAACTTGTTTGATGGCCTCTTTTTGGCAGGCTGAGACTGCTTGGGCAATGACAGTTCTAGGTTATTTGGCAAAACTCATCCTAGGTGTTTTAGGGTATGTGGGAATGTGAAGATATTTTAATTTCCACTAGTTTTTTGGAATAATTTGACATAAATAGATGGCAAATAGTGAATCTGTATTTTTTTGGTTCATGTAAACAGGCTGATTGTCTCTGTAGCTTGGGTTGCCCATATCGTGATATATCTTCTGATTGATCCTCCACTTTCTTCTTTCCTTAATGAGGTTTTCATCAAACTAGATGATATTTGGGGTACCTTCAACCTCTCTCTCTCCTGCCTTATTTGCGATGTATGGTGACTGATACATGAAATGTGATGGTATTTTTTCCCTTTTTTTCTCCAGGTCTCTTGGGCACTGCAGCTTTTGCATTTTTTTGCTTCTACCTTCTGCTTGCTGTGATTGCCGGAGCTATGATGATTGGCTTGAGATTAGTTTTTGTTACGATTCACCCAATGAAGTAAATTTCTTCTGCTGTTTGAAATTATACTTTATTGAATTTGTTTGCCACCTGCTTTGCTCCTCTGTCTCCCCTGACTCACTGCTGTGCTACACCACTATTTACAGGTGGGGAGCTACGCTCATGAACTCCTTTCTTTTCAATGTGGGCCTTATTCTTCTTTGCTCCATCAGGTAGGATTAACTCTACACTGTTCTATTTTTCTTAATGATGAATATCTGAAGGACAAATGCTTAGACCACTGATATTGGGACACTTTGGGTTGTCCATGCAAATAGTGAAGTATTTAATGTACCAGCTAGGATTCAATTTATTGGGTAGTTGAGTGGTGATGTTTGGCTGAAGTGAGGCATGAAGCAACATGCTAAATCAGTTCCTCCAGGTTATGGCCTGATACTACAAAAGAAGCAGCCTGCTTCTTATACGGTCTTGATCTCACTGGGCAATTATTGTTGTAGCTTTGATCTTACTTGGGGGTATTGTGGTTCTAGACCATTTACTAGTTAAACCATATGTAGGCAACTACGGAAAGGAAAGCAAGGATTCCACTGACAGCCGACAGGATATCCTGAACTTCCTTGCTGAATTTATGAGGCATTTGTTATAAGGACGTGCTTGCCCCCTTATTATTTCTAAATAAAAAACAGATAGCTTCATCTACTTTGTTGGATAATGGTTCCATGTATTAAATACTTTGCTGAGGTGATAGGTGGTATATAGAACATGAAATTCGAGGATGACCAATCTGCAGTATTTGGGTTGATAACCACCTTTCTTCTGCTTCCACCTGGTGTAAAAGTTCGGTAGTATGAGCTTTTGTTTTCTGCGCTTGCAGTGTCATTCAGTTCTGCGCCACGGCCTTTGCATACTATGCTCAAGC</genome_strand>
        <mrna_strand>TGTTGGCATTGCTTGTCTCCCTTTGGGACTTATATTTTCGTTCATCAGGCGTCCAAAGGCTGTTATTACACGGTCACAGTATATCAAG...................................................................................................................GAAGCTACCGAGCTTGGTAAAAAAGCGAAAG-A-TGAAGAAAGCAACTGATGCACTTCATCAAGAAGAAAGGAGCGGGAGTAAGGGAAGAAAATGGCGGAAGAATGTAAAGGCAGTCGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGCTTCTTCTTGAAGATGATGTCAAGGCGCTAGAGGAAATGTATCCTCAAGGTGAAAAG........................................................................................................GCTGAGACTGCTTGGGCAATGACAGTTCTAGGTTATTTGGCAAAACTCATCCTAGGTGTTTTAGG...........................................................................................................GCTGATTGTCTCTGTAGCTTGGGTTGCCCATATCGTGATATATCTTCTGATTGATCCTCCACTTTCTTCTTTCCTCAATGAGGTTTTCATCAAACTAGATGATATTTGGG............................................................................................GTCTCTTGGGCACTGCAGCTTTTGCATTTTTTTGCTTCTACCTTCTGCTTGCAGTGATTGCTGGAGCTATGATGATTGGCTTGAGATTAGTTTTTGTTACGATTCACCCAATGAA...........................................................................................................GTGNGGAGCTACGCTCATGAACTCTTTTCTTTTCAATGTGGGCCTTATTCTTCTTTGCTCCATCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCATTCAGTTCTGCGCCACAGCCTTTGCATACTATGCTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E549291" ref_strand="+" ref_description="SGN-E549291 [TUS-69-B1]">
      <seq>tgttggcattgcttgtctccctttgggacttatattttcgttcatcaggcgtccaaaggctgttattacacggtcacagtatatcaaggaagctaccgagcttggtaaaaaagcgaaagatgaagaaagcaactgatgcacttcatcaagaagaaaggagcgggagtaagggaagaaaatggcggaagaatgtaaaggcagtcgaaaaggaggtgcttcttcttgaagatgatgtcaaggcgctagaggaaatgtatcctcaaggtgaaaaggctgagactgcttgggcaatgacagttctaggttatttggcaaaactcatcctaggtgttttagggctgattgtctctgtagcttgggttgcccatatcgtgatatatcttctgattgatcctccactttcttctttcctcaatgaggttttcatcaaactagatgatatttggggtctcttgggcactgcagcttttgcatttttttgcttctaccttctgcttgcagtgattgctggagctatgatgattggcttgagattagtttttgttacgattcacccaatgaagtggggagctacgctcatgaactcctttcttttcaatgtgggccttattcttctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="88418" stop="85568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88118" g_stop="88031" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88030" i_stop="87916" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87915" g_stop="87793" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="209" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87792" i_stop="86688" i_length="1105">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86687" g_stop="86625" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="272" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86624" i_stop="86521" i_length="104">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86520" g_stop="86456" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="337" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86455" i_stop="86349" i_length="107">
            <donor d_prob="0.801" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86348" g_stop="86239" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="447" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86238" i_stop="86147" i_length="92">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="86146" g_stop="86032" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="562" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="86031" i_stop="85925" i_length="107">
            <donor d_prob="0.695" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85924" g_stop="85868" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="619" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E549291" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88118" e_stop="88031"/>
          <exon e_start="87915" e_stop="87793"/>
          <exon e_start="86687" e_stop="86625"/>
          <exon e_start="86520" e_stop="86456"/>
          <exon e_start="86348" e_stop="86239"/>
          <exon e_start="86146" e_stop="86032"/>
          <exon e_start="85924" e_stop="85868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGCATTGCTTGTCTCCCGTTGGGACTTATATTTTCGTTCATCAGGCGTCCAAAGGCTGTTATTACACGGTCACAGTATATCAAGGTATTTTCTTCTGTTAGAAGCTCTTTGCATATGATCCTGATCAGATGTTTAAAATAAAATAAAGGTATATACGCTGGTGTCATGGCTCATGATGCTTAACTTTGATTTTGTATAGGAAGCTACCGAGCTTGGTAAAAGAGCGAAAGAATTGAAGAAAGCAACTGATGCACTTCATCAAGAAGAAAGGAGCGGGAGTAAGGGAAGAAAATGGCGGAAGAATGTGAAGGCAGTCGAAAAGGTATATCTTGTTTCTCATCATGGTTTCTTTGAATGTTTTTTTCATTTTAGCACTATGTTACATATAAGGTGAACTTAAAAATGGAATGTTTTAGAGCCACTCGAGGGTGTGGTTAGTGGTCAATGAAGTGGAGGAGAACCTAAGGTCTTAGGTCTAAATTCTTGGCAAAAGAATAGGCAATTGTCTCTTATGCGTAAGCCTTGGTGGATAGAATTACCAAGGCTGGTGGGAGGTAAAAGGTACCTGGTGGAATAGTCAACATGCAAGCAAGTTGGCTGGGATATCTTCATCCCAACAGAAGGAATGTTTTAGACAATAAACAAAAATATATAAGCAAATCGCACTGTCATGTTGATCATTGCATTTCATTGCATAATTATTATTGTAGAATATCTAGAAGTAAAGGTACATTTGTCTTTGCACCCAACAATGTGGCCTAGTGGTCAATGAAGTTGGTTAGAATCATGAGGTCTGAGTTCAATGTTCAAATCCCAACGGAGGCAAAATCACTAGGCAATTTTTTCTATTTGTCCAAGTCCTCTTGATGGATAGAGGTACCTGCTACCCCGTAGAATTAGTCGAGGTGTGCACATGTTGCCCAGACCACCATGGTCGTCCAAAAAAGATACTTGTGTCTTTTTTAGTAAATGAAACATGCTATAAATATCATCTGTTATGTTAAGTAGGAAAAAGAGGTGGGATGTAAGGTGATAATCATTGTTCAAGTGGCCATTATACATTTTATGAAATTTGAAAATAAAAACAAATAAATAGAACTTTTTATAAGTTCAGCTTGATGCTTCTCCTGCAAAGGCATGAATAAACCATGCTATGCTATTTTAATATGATCAATTGATGTTCATAACCTGTGTATGCAAGTGAAACTCCTCTTGATATGCATGATCCATTGTCCTCGAAATTCTACATTGAAGTTATTGATGATTTTATCTCAGACCTCATGTCAATTTTATCTCTCTTATCTTAGGATGTTGGATGAAGATTCTGTTTTCTTGTCAGATTAATATATCAAGAAATGAATAAACTGAAAAGTACTGGTTTGTTTTTATGTTAGTGTGATAAAATAATTTTTTGTTTTACCTTGCAGGAGGTGCTTCTTCTTGAAGACGATGTCAAGGCGCTAGAGGAAATGTATCCTCAAGGTGAAAAGGTAATGAGATGTGCTTTTATACTTGGCCGCCTAAAATCTTATTTTTCACACCTTGCCAAAGTAATTTTGTTGAGCAAACTTGTTTGATGGCCTCTTTTTGGCAGGCTGAGACTGCTTGGGCAATGACAGTTCTAGGTTATTTGGCAAAACTCATCCTAGGTGTTTTAGGGTATGTGGGAATGTGAAGATATTTTAATTTCCACTAGTTTTTTGGAATAATTTGACATAAATAGATGGCAAATAGTGAATCTGTATTTTTTTGGTTCATGTAAACAGGCTGATTGTCTCTGTAGCTTGGGTTGCCCATATCGTGATATATCTTCTGATTGATCCTCCACTTTCTTCTTTCCTTAATGAGGTTTTCATCAAACTAGATGATATTTGGGGTACCTTCAACCTCTCTCTCTCCTGCCTTATTTGCGATGTATGGTGACTGATACATGAAATGTGATGGTATTTTTTCCCTTTTTTTCTCCAGGTCTCTTGGGCACTGCAGCTTTTGCATTTTTTTGCTTCTACCTTCTGCTTGCTGTGATTGCCGGAGCTATGATGATTGGCTTGAGATTAGTTTTTGTTACGATTCACCCAATGAAGTAAATTTCTTCTGCTGTTTGAAATTATACTTTATTGAATTTGTTTGCCACCTGCTTTGCTCCTCTGTCTCCCCTGACTCACTGCTGTGCTACACCACTATTTACAGGTGGGGAGCTACGCTCATGAACTCCTTTCTTTTCAATGTGGGCCTTATTCTTCTTTG</genome_strand>
        <mrna_strand>TGTTGGCATTGCTTGTCTCCCTTTGGGACTTATATTTTCGTTCATCAGGCGTCCAAAGGCTGTTATTACACGGTCACAGTATATCAAG...................................................................................................................GAAGCTACCGAGCTTGGTAAAAAAGCGAAAG-A-TGAAGAAAGCAACTGATGCACTTCATCAAGAAGAAAGGAGCGGGAGTAAGGGAAGAAAATGGCGGAAGAATGTAAAGGCAGTCGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGCTTCTTCTTGAAGATGATGTCAAGGCGCTAGAGGAAATGTATCCTCAAGGTGAAAAG........................................................................................................GCTGAGACTGCTTGGGCAATGACAGTTCTAGGTTATTTGGCAAAACTCATCCTAGGTGTTTTAGG...........................................................................................................GCTGATTGTCTCTGTAGCTTGGGTTGCCCATATCGTGATATATCTTCTGATTGATCCTCCACTTTCTTCTTTCCTCAATGAGGTTTTCATCAAACTAGATGATATTTGGG............................................................................................GTCTCTTGGGCACTGCAGCTTTTGCATTTTTTTGCTTCTACCTTCTGCTTGCAGTGATTGCTGGAGCTATGATGATTGGCTTGAGATTAGTTTTTGTTACGATTCACCCAATGAA...........................................................................................................GTGGGGAGCTACGCTCATGAACTCCTTTCTTTTCAATGTGGGCCTTATTCTTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E704272" ref_strand="+" ref_description="SGN-E704272 [FA23DC12]">
      <seq>cgcgatttataatggagcgtgtaatctcacgctcccaatgaagcaactatggcttgctatctacattgttgatgctattctcgttttcttcgtcattccttttgctatgttttattacgaaggcgaccaggataagactattgccaaaaggcttaaaagtgcaatgtgttgggtgttggtcacagcaatcgtgtgtgctttgttgcttggaattttatatgggctcgccggaaaggcagacttcactgtaagacacctgtcatcagccaccacttcatttccaaattcatttgattttaacaatggtcaacaatgtattggaaacggtgcccgtcagtgttctgcatactctgctagtgcttcctctgagacaacctggactatgcgtgctacttttcctgaatatgtcgttgctctggctactattgttggatctgtacttttcacgatttttggtggtgttggcattgcttgtctcccgttgggacttatattttcgttcatcaggcgtccaaaggctgttattacacggtcacagtatatcaaggaagctaccgagcttggtaaaagagcgaaagaattgaagaaagcaactgatgcacttcatcaagaagaaaggagcgggagtaagggaagaaaatggcggaagaatgtgaaggcagtcgaaaaggaggtgcttcttcttgaagacgatgtcaaggcgctagaggaaatgtatcctcaaggtgaaaaggctgagactgcttgggcaatgacagttctaggttatttgggcaaactcatcctaagtgttttagggctgattgtctctgtagcttgggttgcccatatcctgatatatcttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="90846" stop="86000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90546" g_stop="90412" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83">
            <donor d_prob="0.553" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90328" g_stop="90243" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="221" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90242" i_stop="88867" i_length="1376">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88866" g_stop="88751" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="337" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88750" i_stop="88631" i_length="120">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88630" g_stop="88520" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="448" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88519" i_stop="88130" i_length="390">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88129" g_stop="88031" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="547" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="88030" i_stop="87916" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87915" g_stop="87793" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="670" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87792" i_stop="86688" i_length="1105">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="86687" g_stop="86625" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="733" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="86624" i_stop="86521" i_length="104">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="86520" g_stop="86456" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="798" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="86455" i_stop="86349" i_length="107">
            <donor d_prob="0.801" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="86348" g_stop="86300" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="847" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E704272" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90546" e_stop="90412"/>
          <exon e_start="90328" e_stop="90243"/>
          <exon e_start="88866" e_stop="88751"/>
          <exon e_start="88630" e_stop="88520"/>
          <exon e_start="88129" e_stop="88031"/>
          <exon e_start="87915" e_stop="87793"/>
          <exon e_start="86687" e_stop="86625"/>
          <exon e_start="86520" e_stop="86456"/>
          <exon e_start="86348" e_stop="86300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAAGTACGTGAATTTGAACAATTTTGGATGTGATGTGTATGGTATGGTATTGCTGTTCTGATGTTTTTATTTTCTGTTTTCTGTAGGACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATGGTAAGCTTCGAGTAACTTTGTGTGTTGATGAGACTTGTTGACATGTATAATATGCTGTGCATTTCTAGCTTTGGATGCTAATGTGATGTAGGGTGAGCTTCGGGACTAGTTAGTTTCGATCAGGAAATGTCAGAATCTGGGTACGGAGTTGGGTAATTTAGATGACAGCCAACTATGCCATAACCAAAATTAGTTGGGTTGATTCAATGAATTATCTGTATCCATTAAATGCAAGAGTTAAGAGTATCTTTTGGCTACTGTAAGCAGTTTACCTACATTCTCTACCTTTATTGTGGTCTGAACTGAGGATTGCATTGAGATGTTTTCATAGGCAGAGTTAAAAGCCTGAGTCTTGGATATGGAGTGAATTGGTATAAAGATCACATACTTAATGGTTCAAATTACGAGCTTATTGAGGGAGTTGTCGTGTCTCTCTTATTTGAGATTCTCTATCATGTGTGGTTGTTGTGTTTCTTATTTGGACTTCACTATCATGTGTAGTTGCTGTGTTTCTTATTTGGACTTCACTATTATGTGTCTAGCTTTGGAAGTTATTACAGTTTCTTCGGTTGGTAGTTTTTTCTCATGAATTCCCCCCCCCCCCCCCCCATAGATGATGGGACAATTACGAAAAGAAGAATATCTGGATATTGGCACCCAAAGGGTAGCGGCTGGGGGTTACCCTTGTCATAAGAAAAAAGAATATCTGGATGCTGTTTATGGGAAAATTATGCCTAGTGTTAGGAGTTGTATTTTGCCCTTCTAGATTTCTTATTATAAGTTGAATACTCTTGATTATACCCAAGATGGTGTCAAGAATGTCTCATCTGGTTTGTGGCTCAATTACAAGCTTCCCACAGATTTTCCCATCTTTGCCACTCTAGTTGTTGTAGTGCTACCTGGGTCTAGTTTTGACCAGATACGAATGTGTGATTATTGGGACATATTTCAAAACATTATGCATTTTTTACGTGTGGATACTGAAGAACCAAAAGAGAAGGGGAGGTGATCTTGTCCGCCGCATGTTATCAAGAATTTTACTGCAATGGCAAGTAGTTATGAACTTTTGGGACCCCAAAACTGTTGCTAACTGCACCTTGCTCTTCGATTAATTATGCAATGGGGAACATACTTATGTACATAGTTACATTCATCCCTTTCCTCAGGGTTTATGTAGTTTTCAATTGCAATTTGTTACCTTCATTGCTTTTAACTTTGTGGATCTCCTTTGCACATTTTACCACTTTTTTTCCCTGATAAGTATACTGAAGTGTCTAGTTATATTGAATTGCTTAAGTTCGGGTAAGTTGTTTTGGTTTTGTTGTTCATCACACTTCTTTTTTGATCTTTATCTACCCCTCTTTTGGGTATTTCAGGGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCGTCAGGTTGGTGCAAATTTAAACTTTCTTGTTTCTTAGTTAGTTGAGCTTATATAAGCATCAATAAGTAGTTTAATGTCTTATTCCAAAGTCGCCATTCTAATCCTTGCCTTCAATTGTTACCAGTGTTCTGCATACTCTGCTAGTGCTTCCTCTGAGACAACCTGGACTATGCGTGCTACTTTTCCTGAATATGTCGTTGCTCTGGCTACTATTGTTGGATCTGTACTTTTCACGGTATGACAATTCCTAATTCTAGACACTTGAATATTGTTATTGTTGTGATGAAGAGACTTAATGTTCAATTCTTCAGTCATTTCTGTCTTGGCAAAATGCCTCTTAATATGGAGAACTTCTTAGATATCACTTTTCTGGTTTTTGAGTGTAGAACTTTAGAAATCAATGTGAGTAATTTTTCTGTGGTTTGCAGTTGAAAATAAAATAAATTTGTGTAAGGGTGGCCACTTGACTATGAATGTTTTGTTGTGTCTTCTGATTATAGTTGAGGGGGTTAGGGTGATCGGTTCTTTTAAGGTTGGGGAGCAGCATTGGAGGCCAAAAGAGAGAACCCGTCACCCTAATATGCATGTTTGGTACTGACTTATCTGCTTCACATATTATCTCCAGATTTTTGGTGGTGTTGGCATTGCTTGTCTCCCGTTGGGACTTATATTTTCGTTCATCAGGCGTCCAAAGGCTGTTATTACACGGTCACAGTATATCAAGGTATTTTCTTCTGTTAGAAGCTCTTTGCATATGATCCTGATCAGATGTTTAAAATAAAATAAAGGTATATACGCTGGTGTCATGGCTCATGATGCTTAACTTTGATTTTGTATAGGAAGCTACCGAGCTTGGTAAAAGAGCGAAAGAATTGAAGAAAGCAACTGATGCACTTCATCAAGAAGAAAGGAGCGGGAGTAAGGGAAGAAAATGGCGGAAGAATGTGAAGGCAGTCGAAAAGGTATATCTTGTTTCTCATCATGGTTTCTTTGAATGTTTTTTTCATTTTAGCACTATGTTACATATAAGGTGAACTTAAAAATGGAATGTTTTAGAGCCACTCGAGGGTGTGGTTAGTGGTCAATGAAGTGGAGGAGAACCTAAGGTCTTAGGTCTAAATTCTTGGCAAAAGAATAGGCAATTGTCTCTTATGCGTAAGCCTTGGTGGATAGAATTACCAAGGCTGGTGGGAGGTAAAAGGTACCTGGTGGAATAGTCAACATGCAAGCAAGTTGGCTGGGATATCTTCATCCCAACAGAAGGAATGTTTTAGACAATAAACAAAAATATATAAGCAAATCGCACTGTCATGTTGATCATTGCATTTCATTGCATAATTATTATTGTAGAATATCTAGAAGTAAAGGTACATTTGTCTTTGCACCCAACAATGTGGCCTAGTGGTCAATGAAGTTGGTTAGAATCATGAGGTCTGAGTTCAATGTTCAAATCCCAACGGAGGCAAAATCACTAGGCAATTTTTTCTATTTGTCCAAGTCCTCTTGATGGATAGAGGTACCTGCTACCCCGTAGAATTAGTCGAGGTGTGCACATGTTGCCCAGACCACCATGGTCGTCCAAAAAAGATACTTGTGTCTTTTTTAGTAAATGAAACATGCTATAAATATCATCTGTTATGTTAAGTAGGAAAAAGAGGTGGGATGTAAGGTGATAATCATTGTTCAAGTGGCCATTATACATTTTATGAAATTTGAAAATAAAAACAAATAAATAGAACTTTTTATAAGTTCAGCTTGATGCTTCTCCTGCAAAGGCATGAATAAACCATGCTATGCTATTTTAATATGATCAATTGATGTTCATAACCTGTGTATGCAAGTGAAACTCCTCTTGATATGCATGATCCATTGTCCTCGAAATTCTACATTGAAGTTATTGATGATTTTATCTCAGACCTCATGTCAATTTTATCTCTCTTATCTTAGGATGTTGGATGAAGATTCTGTTTTCTTGTCAGATTAATATATCAAGAAATGAATAAACTGAAAAGTACTGGTTTGTTTTTATGTTAGTGTGATAAAATAATTTTTTGTTTTACCTTGCAGGAGGTGCTTCTTCTTGAAGACGATGTCAAGGCGCTAGAGGAAATGTATCCTCAAGGTGAAAAGGTAATGAGATGTGCTTTTATACTTGGCCGCCTAAAATCTTATTTTTCACACCTTGCCAAAGTAATTTTGTTGAGCAAACTTGTTTGATGGCCTCTTTTTGGCAGGCTGAGACTGCTTGGGCAATGACAGTTCTAGGTTATTTGGCAAAACTCATCCTAGGTGTTTTAGGGTATGTGGGAATGTGAAGATATTTTAATTTCCACTAGTTTTTTGGAATAATTTGACATAAATAGATGGCAAATAGTGAATCTGTATTTTTTTGGTTCATGTAAACAGGCTGATTGTCTCTGTAGCTTGGGTTGCCCATATCGTGATATATCTTCTG</genome_strand>
        <mrna_strand>CGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAA...................................................................................GACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCGTCAG........................................................................................................................TGTTCTGCATACTCTGCTAGTGCTTCCTCTGAGACAACCTGGACTATGCGTGCTACTTTTCCTGAATATGTCGTTGCTCTGGCTACTATTGTTGGATCTGTACTTTTCACG......................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGGTGGTGTTGGCATTGCTTGTCTCCCGTTGGGACTTATATTTTCGTTCATCAGGCGTCCAAAGGCTGTTATTACACGGTCACAGTATATCAAG...................................................................................................................GAAGCTACCGAGCTTGGTAAAAGAGCGAAAGAATTGAAGAAAGCAACTGATGCACTTCATCAAGAAGAAAGGAGCGGGAGTAAGGGAAGAAAATGGCGGAAGAATGTGAAGGCAGTCGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGCTTCTTCTTGAAGACGATGTCAAGGCGCTAGAGGAAATGTATCCTCAAGGTGAAAAG........................................................................................................GCTGAGACTGCTTGGGCAATGACAGTTCTAGGTTATTTGGGCAAACTCATCCTAAGTGTTTTAGG...........................................................................................................GCTGATTGTCTCTGTAGCTTGGGTTGCCCATATCCTGATATATCTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E330249" ref_strand="+" ref_description="SGN-E330249 [cTOD-4-M2]">
      <seq>tattctcgttttcgtagtcaatgtctatcttctcatcaattatcagcaccctgatgatgcaaatcaagcctatttccccaaatttgttgtcgtttttggcttatcagtcgctgccatttctattctcatgttaccggccgatgttgctaatcggcaggcatgtcaacacgcgatttataatggagcgtgtaatctcacgctcccaatgaagcaactatggcttgctatctacattgttgatgctattctcgttttcttcgtcattccttttgctatgttttattacgaaggcgaccaggataagactattgccaaaaggcttaaaagtgcaatgtgttgggtgttggtcacagcaatcgtgtgtgctttgttgcttggaattttatatgggctcgccggaaaggcagacttcactgtaagacacctgtcatcagccaccacttcatttccaaattcatttgattttaacaatggtcaacaatgtattggaaacggtgcccgtcagtgttctgcatactctgctagtgcttcctctgagacaacctgnactatgcgtgctacttttcctgaatatgtcgttgctctggctactattgttggatctgtacttttcacgatttttggtggtgttggcattgcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="91014" stop="87803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90714" g_stop="90412" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83">
            <donor d_prob="0.553" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90328" g_stop="90243" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="389" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90242" i_stop="88867" i_length="1376">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88866" g_stop="88751" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="505" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88750" i_stop="88631" i_length="120">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.606" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88630" g_stop="88520" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="616" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88519" i_stop="88130" i_length="390">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88129" g_stop="88103" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="643" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E330249" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90714" e_stop="90412"/>
          <exon e_start="90328" e_stop="90243"/>
          <exon e_start="88866" e_stop="88751"/>
          <exon e_start="88630" e_stop="88520"/>
          <exon e_start="88129" e_stop="88103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAAGTACGTGAATTTGAACAATTTTGGATGTGATGTGTATGGTATGGTATTGCTGTTCTGATGTTTTTATTTTCTGTTTTCTGTAGGACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATGGTAAGCTTCGAGTAACTTTGTGTGTTGATGAGACTTGTTGACATGTATAATATGCTGTGCATTTCTAGCTTTGGATGCTAATGTGATGTAGGGTGAGCTTCGGGACTAGTTAGTTTCGATCAGGAAATGTCAGAATCTGGGTACGGAGTTGGGTAATTTAGATGACAGCCAACTATGCCATAACCAAAATTAGTTGGGTTGATTCAATGAATTATCTGTATCCATTAAATGCAAGAGTTAAGAGTATCTTTTGGCTACTGTAAGCAGTTTACCTACATTCTCTACCTTTATTGTGGTCTGAACTGAGGATTGCATTGAGATGTTTTCATAGGCAGAGTTAAAAGCCTGAGTCTTGGATATGGAGTGAATTGGTATAAAGATCACATACTTAATGGTTCAAATTACGAGCTTATTGAGGGAGTTGTCGTGTCTCTCTTATTTGAGATTCTCTATCATGTGTGGTTGTTGTGTTTCTTATTTGGACTTCACTATCATGTGTAGTTGCTGTGTTTCTTATTTGGACTTCACTATTATGTGTCTAGCTTTGGAAGTTATTACAGTTTCTTCGGTTGGTAGTTTTTTCTCATGAATTCCCCCCCCCCCCCCCCCATAGATGATGGGACAATTACGAAAAGAAGAATATCTGGATATTGGCACCCAAAGGGTAGCGGCTGGGGGTTACCCTTGTCATAAGAAAAAAGAATATCTGGATGCTGTTTATGGGAAAATTATGCCTAGTGTTAGGAGTTGTATTTTGCCCTTCTAGATTTCTTATTATAAGTTGAATACTCTTGATTATACCCAAGATGGTGTCAAGAATGTCTCATCTGGTTTGTGGCTCAATTACAAGCTTCCCACAGATTTTCCCATCTTTGCCACTCTAGTTGTTGTAGTGCTACCTGGGTCTAGTTTTGACCAGATACGAATGTGTGATTATTGGGACATATTTCAAAACATTATGCATTTTTTACGTGTGGATACTGAAGAACCAAAAGAGAAGGGGAGGTGATCTTGTCCGCCGCATGTTATCAAGAATTTTACTGCAATGGCAAGTAGTTATGAACTTTTGGGACCCCAAAACTGTTGCTAACTGCACCTTGCTCTTCGATTAATTATGCAATGGGGAACATACTTATGTACATAGTTACATTCATCCCTTTCCTCAGGGTTTATGTAGTTTTCAATTGCAATTTGTTACCTTCATTGCTTTTAACTTTGTGGATCTCCTTTGCACATTTTACCACTTTTTTTCCCTGATAAGTATACTGAAGTGTCTAGTTATATTGAATTGCTTAAGTTCGGGTAAGTTGTTTTGGTTTTGTTGTTCATCACACTTCTTTTTTGATCTTTATCTACCCCTCTTTTGGGTATTTCAGGGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCGTCAGGTTGGTGCAAATTTAAACTTTCTTGTTTCTTAGTTAGTTGAGCTTATATAAGCATCAATAAGTAGTTTAATGTCTTATTCCAAAGTCGCCATTCTAATCCTTGCCTTCAATTGTTACCAGTGTTCTGCATACTCTGCTAGTGCTTCCTCTGAGACAACCTGGACTATGCGTGCTACTTTTCCTGAATATGTCGTTGCTCTGGCTACTATTGTTGGATCTGTACTTTTCACGGTATGACAATTCCTAATTCTAGACACTTGAATATTGTTATTGTTGTGATGAAGAGACTTAATGTTCAATTCTTCAGTCATTTCTGTCTTGGCAAAATGCCTCTTAATATGGAGAACTTCTTAGATATCACTTTTCTGGTTTTTGAGTGTAGAACTTTAGAAATCAATGTGAGTAATTTTTCTGTGGTTTGCAGTTGAAAATAAAATAAATTTGTGTAAGGGTGGCCACTTGACTATGAATGTTTTGTTGTGTCTTCTGATTATAGTTGAGGGGGTTAGGGTGATCGGTTCTTTTAAGGTTGGGGAGCAGCATTGGAGGCCAAAAGAGAGAACCCGTCACCCTAATATGCATGTTTGGTACTGACTTATCTGCTTCACATATTATCTCCAGATTTTTGGTGGTGTTGGCATTGCTTGT</genome_strand>
        <mrna_strand>TATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAA...................................................................................GACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCGTCAG........................................................................................................................TGTTCTGCATACTCTGCTAGTGCTTCCTCTGAGACAACCTGNACTATGCGTGCTACTTTTCCTGAATATGTCGTTGCTCTGGCTACTATTGTTGGATCTGTACTTTTCACG......................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTGGTGGTGTTGGCATTGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E443060" ref_strand="+" ref_description="SGN-E443060 [cSTA-36-G19]">
      <seq>atcccccgggctgcagaatcgccgaggctatggctgcttctacattgtgatgctattctcgttttttcgtcttccctttgctatgttctactacgaagcgaccaggataagacaattgccaaaaggcttaaaagtgcaatgtgtggggttggtcacagcaattggtgtgctttgtgcttgaatttattggctcctggaaaggcaacttactgtagacacctgtcatcaccccacttctttccaaattcatttgattttaacaatggtcaacaatgtattggaaatggtgccncgtcagtgttctgcatattctgctaatgcttcctctgagacaacctggactatgcatgctacttttcctgaatatgtcgttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="90800" stop="88252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90499" g_stop="90412" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="110" r_length="82" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83">
            <donor d_prob="0.553" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90328" g_stop="90243" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="188" r_length="78" r_score="0.884"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90242" i_stop="88867" i_length="1376">
            <donor d_prob="0.909" d_score="0.84"/>
            <acceptor a_prob="0.999" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88866" g_stop="88751" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="298" r_length="110" r_score="0.905"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88750" i_stop="88631" i_length="120">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.606" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88630" g_stop="88552" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="377" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E443060" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90499" e_stop="90412"/>
          <exon e_start="90328" e_stop="90243"/>
          <exon e_start="88866" e_stop="88751"/>
          <exon e_start="88630" e_stop="88552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAAGTACGTGAATTTGAACAATTTTGGATGTGATGTGTATGGTATGGTATTGCTGTTCTGATGTTTTTATTTTCTGTTTTCTGTAGGACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATGGTAAGCTTCGAGTAACTTTGTGTGTTGATGAGACTTGTTGACATGTATAATATGCTGTGCATTTCTAGCTTTGGATGCTAATGTGATGTAGGGTGAGCTTCGGGACTAGTTAGTTTCGATCAGGAAATGTCAGAATCTGGGTACGGAGTTGGGTAATTTAGATGACAGCCAACTATGCCATAACCAAAATTAGTTGGGTTGATTCAATGAATTATCTGTATCCATTAAATGCAAGAGTTAAGAGTATCTTTTGGCTACTGTAAGCAGTTTACCTACATTCTCTACCTTTATTGTGGTCTGAACTGAGGATTGCATTGAGATGTTTTCATAGGCAGAGTTAAAAGCCTGAGTCTTGGATATGGAGTGAATTGGTATAAAGATCACATACTTAATGGTTCAAATTACGAGCTTATTGAGGGAGTTGTCGTGTCTCTCTTATTTGAGATTCTCTATCATGTGTGGTTGTTGTGTTTCTTATTTGGACTTCACTATCATGTGTAGTTGCTGTGTTTCTTATTTGGACTTCACTATTATGTGTCTAGCTTTGGAAGTTATTACAGTTTCTTCGGTTGGTAGTTTTTTCTCATGAATTCCCCCCCCCCCCCCCCCATAGATGATGGGACAATTACGAAAAGAAGAATATCTGGATATTGGCACCCAAAGGGTAGCGGCTGGGGGTTACCCTTGTCATAAGAAAAAAGAATATCTGGATGCTGTTTATGGGAAAATTATGCCTAGTGTTAGGAGTTGTATTTTGCCCTTCTAGATTTCTTATTATAAGTTGAATACTCTTGATTATACCCAAGATGGTGTCAAGAATGTCTCATCTGGTTTGTGGCTCAATTACAAGCTTCCCACAGATTTTCCCATCTTTGCCACTCTAGTTGTTGTAGTGCTACCTGGGTCTAGTTTTGACCAGATACGAATGTGTGATTATTGGGACATATTTCAAAACATTATGCATTTTTTACGTGTGGATACTGAAGAACCAAAAGAGAAGGGGAGGTGATCTTGTCCGCCGCATGTTATCAAGAATTTTACTGCAATGGCAAGTAGTTATGAACTTTTGGGACCCCAAAACTGTTGCTAACTGCACCTTGCTCTTCGATTAATTATGCAATGGGGAACATACTTATGTACATAGTTACATTCATCCCTTTCCTCAGGGTTTATGTAGTTTTCAATTGCAATTTGTTACCTTCATTGCTTTTAACTTTGTGGATCTCCTTTGCACATTTTACCACTTTTTTTCCCTGATAAGTATACTGAAGTGTCTAGTTATATTGAATTGCTTAAGTTCGGGTAAGTTGTTTTGGTTTTGTTGTTCATCACACTTCTTTTTTGATCTTTATCTACCCCTCTTTTGGGTATTTCAGGGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCC-CGTCAGGTTGGTGCAAATTTAAACTTTCTTGTTTCTTAGTTAGTTGAGCTTATATAAGCATCAATAAGTAGTTTAATGTCTTATTCCAAAGTCGCCATTCTAATCCTTGCCTTCAATTGTTACCAGTGTTCTGCATACTCTGCTAGTGCTTCCTCTGAGACAACCTGGACTATGCGTGCTACTTTTCCTGAATATGTCGTTGCTC</genome_strand>
        <mrna_strand>TATGGC-TGCT-TCTACATTGT-GATGCTATTCTCGTTTT-TTCGTC-TTCCCTTTGCTATGTTCTACTACGAA-GCGACCAGGATAA...................................................................................GACAATTGCCAAAAGGCTTAAAAGTGCAATGTG-TGGG-GTTGGTCACAGCAATTG-GTGTGCTTTG-TGCTT-GAA-TTTAT-T-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTC-CTGGAAAGGCA-ACTT-ACTGT-AGACACCTGTCATCA-CC-CCACTTC-TTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAATGGTGCCNCGTCAG........................................................................................................................TGTTCTGCATATTCTGCTAATGCTTCCTCTGAGACAACCTGGACTATGCATGCTACTTTTCCTGAATATGTCGTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E212677" ref_strand="+" ref_description="SGN-E212677 [cLEC-73-A18]">
      <seq>tcaaatttcaaacccaaaccctaaattcttctcattcacacgttattccgattcgaatcaaccttcaaaattgatccgaatcgagaaatcttcacacaacaatgggggatttcaatctcgccttggttattgtagccattgtagtatgtattctcgttttcgtagtcaatgtctatcttctcatcaattatcagcaccctgatgatgcaaatcaagcctatttccccaaatttgttgtcgtttttggcttatcagtcgctgccatttctattctcatgttaccggccgatgttgctaatcggcaggcatgtcaacacgcgatttataatggagcgtgtaatctcacgctcccaatgaagcaactatggcttgctatctacattgttgatgctattctcgttttcttcgtcattccttttgctatgttttattacgaaggcgaccaggataagactattgccaaaaggcttaaaagtgcaatgtgttgggtgttggtcacagcaatcgtgtgtgctttgttgcttggaattttatatgggctcgccggaaaggcagacttcactgtaagacacctgtcatcagccaccacttcatttccaaattcatttgattttaaacatggtcaacaatgtattggaaacggtgcccgtcagtgttctgcatactctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="91162" stop="88313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90862" g_stop="90412" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83">
            <donor d_prob="0.553" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90328" g_stop="90243" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="537" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90242" i_stop="88867" i_length="1376">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88866" g_stop="88751" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="653" r_length="116" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88750" i_stop="88631" i_length="120">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.606" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88630" g_stop="88613" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="671" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E212677" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90862" e_stop="90412"/>
          <exon e_start="90328" e_stop="90243"/>
          <exon e_start="88866" e_stop="88751"/>
          <exon e_start="88630" e_stop="88613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAAGTACGTGAATTTGAACAATTTTGGATGTGATGTGTATGGTATGGTATTGCTGTTCTGATGTTTTTATTTTCTGTTTTCTGTAGGACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATGGTAAGCTTCGAGTAACTTTGTGTGTTGATGAGACTTGTTGACATGTATAATATGCTGTGCATTTCTAGCTTTGGATGCTAATGTGATGTAGGGTGAGCTTCGGGACTAGTTAGTTTCGATCAGGAAATGTCAGAATCTGGGTACGGAGTTGGGTAATTTAGATGACAGCCAACTATGCCATAACCAAAATTAGTTGGGTTGATTCAATGAATTATCTGTATCCATTAAATGCAAGAGTTAAGAGTATCTTTTGGCTACTGTAAGCAGTTTACCTACATTCTCTACCTTTATTGTGGTCTGAACTGAGGATTGCATTGAGATGTTTTCATAGGCAGAGTTAAAAGCCTGAGTCTTGGATATGGAGTGAATTGGTATAAAGATCACATACTTAATGGTTCAAATTACGAGCTTATTGAGGGAGTTGTCGTGTCTCTCTTATTTGAGATTCTCTATCATGTGTGGTTGTTGTGTTTCTTATTTGGACTTCACTATCATGTGTAGTTGCTGTGTTTCTTATTTGGACTTCACTATTATGTGTCTAGCTTTGGAAGTTATTACAGTTTCTTCGGTTGGTAGTTTTTTCTCATGAATTCCCCCCCCCCCCCCCCCATAGATGATGGGACAATTACGAAAAGAAGAATATCTGGATATTGGCACCCAAAGGGTAGCGGCTGGGGGTTACCCTTGTCATAAGAAAAAAGAATATCTGGATGCTGTTTATGGGAAAATTATGCCTAGTGTTAGGAGTTGTATTTTGCCCTTCTAGATTTCTTATTATAAGTTGAATACTCTTGATTATACCCAAGATGGTGTCAAGAATGTCTCATCTGGTTTGTGGCTCAATTACAAGCTTCCCACAGATTTTCCCATCTTTGCCACTCTAGTTGTTGTAGTGCTACCTGGGTCTAGTTTTGACCAGATACGAATGTGTGATTATTGGGACATATTTCAAAACATTATGCATTTTTTACGTGTGGATACTGAAGAACCAAAAGAGAAGGGGAGGTGATCTTGTCCGCCGCATGTTATCAAGAATTTTACTGCAATGGCAAGTAGTTATGAACTTTTGGGACCCCAAAACTGTTGCTAACTGCACCTTGCTCTTCGATTAATTATGCAATGGGGAACATACTTATGTACATAGTTACATTCATCCCTTTCCTCAGGGTTTATGTAGTTTTCAATTGCAATTTGTTACCTTCATTGCTTTTAACTTTGTGGATCTCCTTTGCACATTTTACCACTTTTTTTCCCTGATAAGTATACTGAAGTGTCTAGTTATATTGAATTGCTTAAGTTCGGGTAAGTTGTTTTGGTTTTGTTGTTCATCACACTTCTTTTTTGATCTTTATCTACCCCTCTTTTGGGTATTTCAGGGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCGTCAGGTTGGTGCAAATTTAAACTTTCTTGTTTCTTAGTTAGTTGAGCTTATATAAGCATCAATAAGTAGTTTAATGTCTTATTCCAAAGTCGCCATTCTAATCCTTGCCTTCAATTGTTACCAGTGTTCTGCATACTCTGCT</genome_strand>
        <mrna_strand>TCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAA...................................................................................GACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAAACATGGTCAACAATGTATTGGAAACGGTGCCCGTCAG........................................................................................................................TGTTCTGCATACTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E717731" ref_strand="+" ref_description="SGN-E717731 [FC02CC11]">
      <seq>ggccgaattgccctttcttttcgaaacccagatctgaaaaagggtctctgttcatcaaatttcaaacccaaaccctaaattcttctcattcacacgttattccgattcgaatcaaccttcaaaattgatccgaatcgagaaatcttcacacaacaatgggggatttcaatctcgccttggttattgtagccattgtagtatgtattctcgttttcgtagtcaatgtctatcttctcatcaattatcagcatcctgatgatgctaatcaagcctatttccccaaatttgttgtcgtttttggcttatcagtcgctgccatttctattctcatgttaccggccgatgttgctaatcggcaggcatgtcaacacgcgatttataatggagcgtgtaatctcacgctcccaatgaagcaactatggcttgctatctacattgttgatgctattctcgttttcttcgtcattccttttgctatgttttattacgaaggcgaccaggataagactattgccaaaaggcttaaaagtgcaatgtgttgggtgttggtcacagcaatcgtgtgtgctttgttgcttggaattttatatgggctcgccggaaaggcagacttcactgtaagacacctgtcatcagccaccacttcatttccaaattcatttgattttaacaatggtcaacaatgtattggaaacggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="91210" stop="88460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90919" g_stop="90412" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83">
            <donor d_prob="0.553" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90328" g_stop="90243" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="591" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90242" i_stop="88867" i_length="1376">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88866" g_stop="88760" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="698" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E717731" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90919" e_stop="90412"/>
          <exon e_start="90328" e_stop="90243"/>
          <exon e_start="88866" e_stop="88760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTGTTTTTCCCCTTTCTTTTCGAAAACCCAGATCTGAAAAAGGGTCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAAGTACGTGAATTTGAACAATTTTGGATGTGATGTGTATGGTATGGTATTGCTGTTCTGATGTTTTTATTTTCTGTTTTCTGTAGGACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATGGTAAGCTTCGAGTAACTTTGTGTGTTGATGAGACTTGTTGACATGTATAATATGCTGTGCATTTCTAGCTTTGGATGCTAATGTGATGTAGGGTGAGCTTCGGGACTAGTTAGTTTCGATCAGGAAATGTCAGAATCTGGGTACGGAGTTGGGTAATTTAGATGACAGCCAACTATGCCATAACCAAAATTAGTTGGGTTGATTCAATGAATTATCTGTATCCATTAAATGCAAGAGTTAAGAGTATCTTTTGGCTACTGTAAGCAGTTTACCTACATTCTCTACCTTTATTGTGGTCTGAACTGAGGATTGCATTGAGATGTTTTCATAGGCAGAGTTAAAAGCCTGAGTCTTGGATATGGAGTGAATTGGTATAAAGATCACATACTTAATGGTTCAAATTACGAGCTTATTGAGGGAGTTGTCGTGTCTCTCTTATTTGAGATTCTCTATCATGTGTGGTTGTTGTGTTTCTTATTTGGACTTCACTATCATGTGTAGTTGCTGTGTTTCTTATTTGGACTTCACTATTATGTGTCTAGCTTTGGAAGTTATTACAGTTTCTTCGGTTGGTAGTTTTTTCTCATGAATTCCCCCCCCCCCCCCCCCATAGATGATGGGACAATTACGAAAAGAAGAATATCTGGATATTGGCACCCAAAGGGTAGCGGCTGGGGGTTACCCTTGTCATAAGAAAAAAGAATATCTGGATGCTGTTTATGGGAAAATTATGCCTAGTGTTAGGAGTTGTATTTTGCCCTTCTAGATTTCTTATTATAAGTTGAATACTCTTGATTATACCCAAGATGGTGTCAAGAATGTCTCATCTGGTTTGTGGCTCAATTACAAGCTTCCCACAGATTTTCCCATCTTTGCCACTCTAGTTGTTGTAGTGCTACCTGGGTCTAGTTTTGACCAGATACGAATGTGTGATTATTGGGACATATTTCAAAACATTATGCATTTTTTACGTGTGGATACTGAAGAACCAAAAGAGAAGGGGAGGTGATCTTGTCCGCCGCATGTTATCAAGAATTTTACTGCAATGGCAAGTAGTTATGAACTTTTGGGACCCCAAAACTGTTGCTAACTGCACCTTGCTCTTCGATTAATTATGCAATGGGGAACATACTTATGTACATAGTTACATTCATCCCTTTCCTCAGGGTTTATGTAGTTTTCAATTGCAATTTGTTACCTTCATTGCTTTTAACTTTGTGGATCTCCTTTGCACATTTTACCACTTTTTTTCCCTGATAAGTATACTGAAGTGTCTAGTTATATTGAATTGCTTAAGTTCGGGTAAGTTGTTTTGGTTTTGTTGTTCATCACACTTCTTTTTTGATCTTTATCTACCCCTCTTTTGGGTATTTCAGGGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGT</genome_strand>
        <mrna_strand>GGCC-GAATTGCCC-TTTCTTTTCGA-AACCCAGATCTGAAAAAGGGTCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCATCCTGATGATGCTAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAA...................................................................................GACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E443240" ref_strand="+" ref_description="SGN-E443240 [cSTA-36-L12]">
      <seq>cgaaaacccagatctgaaaaagggcctctgttcatcaaatttcaaacccaaaccctaaattcttctcattcacacgttgttccgattcgaatcaaccttcaaaattgatccgaatcgagaaatcttcacacagcaatgggggatttcaatctcgccttggttattgtagccatagtcgtatgtattctcgttttcatattcaatgtctatcttctcatcaattatcagcatcctgatgatgctaatcaagcctatttccccaaattcgttgtcgtttttggcctctcaatcgccgccatttcaattctcatgttaccggccgatgttgcaaatcggcaggcttgtcaacacgcgatttataatggagcttgtaatctcacgctcccgatgaagcaactatggcttgctatctacattgttgatgctattctcgttttcttcgtcattccctttgctatgttctactacgaaggcgaccaggataagacaattgccaaaaggcttaaaagtgcaatgtgttgggtgttggtcacagcaattgtgtgtgctttgttgcttggaattttatatgggctcgctggaaaggcagacttcactgtaagacacctgtcatcagccaccacttcctttccaaattcatttgattttaacaatggtcaacaatgtattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="91196" stop="88466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90896" g_stop="90412" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83">
            <donor d_prob="0.553" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90328" g_stop="90243" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="571" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90242" i_stop="88867" i_length="1376">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88866" g_stop="88766" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="672" r_length="101" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E443240" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90896" e_stop="90412"/>
          <exon e_start="90328" e_stop="90243"/>
          <exon e_start="88866" e_stop="88766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACCCAGATCTGAAAAAGGGTCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAAGTACGTGAATTTGAACAATTTTGGATGTGATGTGTATGGTATGGTATTGCTGTTCTGATGTTTTTATTTTCTGTTTTCTGTAGGACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATGGTAAGCTTCGAGTAACTTTGTGTGTTGATGAGACTTGTTGACATGTATAATATGCTGTGCATTTCTAGCTTTGGATGCTAATGTGATGTAGGGTGAGCTTCGGGACTAGTTAGTTTCGATCAGGAAATGTCAGAATCTGGGTACGGAGTTGGGTAATTTAGATGACAGCCAACTATGCCATAACCAAAATTAGTTGGGTTGATTCAATGAATTATCTGTATCCATTAAATGCAAGAGTTAAGAGTATCTTTTGGCTACTGTAAGCAGTTTACCTACATTCTCTACCTTTATTGTGGTCTGAACTGAGGATTGCATTGAGATGTTTTCATAGGCAGAGTTAAAAGCCTGAGTCTTGGATATGGAGTGAATTGGTATAAAGATCACATACTTAATGGTTCAAATTACGAGCTTATTGAGGGAGTTGTCGTGTCTCTCTTATTTGAGATTCTCTATCATGTGTGGTTGTTGTGTTTCTTATTTGGACTTCACTATCATGTGTAGTTGCTGTGTTTCTTATTTGGACTTCACTATTATGTGTCTAGCTTTGGAAGTTATTACAGTTTCTTCGGTTGGTAGTTTTTTCTCATGAATTCCCCCCCCCCCCCCCCCATAGATGATGGGACAATTACGAAAAGAAGAATATCTGGATATTGGCACCCAAAGGGTAGCGGCTGGGGGTTACCCTTGTCATAAGAAAAAAGAATATCTGGATGCTGTTTATGGGAAAATTATGCCTAGTGTTAGGAGTTGTATTTTGCCCTTCTAGATTTCTTATTATAAGTTGAATACTCTTGATTATACCCAAGATGGTGTCAAGAATGTCTCATCTGGTTTGTGGCTCAATTACAAGCTTCCCACAGATTTTCCCATCTTTGCCACTCTAGTTGTTGTAGTGCTACCTGGGTCTAGTTTTGACCAGATACGAATGTGTGATTATTGGGACATATTTCAAAACATTATGCATTTTTTACGTGTGGATACTGAAGAACCAAAAGAGAAGGGGAGGTGATCTTGTCCGCCGCATGTTATCAAGAATTTTACTGCAATGGCAAGTAGTTATGAACTTTTGGGACCCCAAAACTGTTGCTAACTGCACCTTGCTCTTCGATTAATTATGCAATGGGGAACATACTTATGTACATAGTTACATTCATCCCTTTCCTCAGGGTTTATGTAGTTTTCAATTGCAATTTGTTACCTTCATTGCTTTTAACTTTGTGGATCTCCTTTGCACATTTTACCACTTTTTTTCCCTGATAAGTATACTGAAGTGTCTAGTTATATTGAATTGCTTAAGTTCGGGTAAGTTGTTTTGGTTTTGTTGTTCATCACACTTCTTTTTTGATCTTTATCTACCCCTCTTTTGGGTATTTCAGGGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGA</genome_strand>
        <mrna_strand>CGAAAACCCAGATCTGAAAAAGGGCCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTGTTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAGCAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATAGTCGTATGTATTCTCGTTTTCATATTCAATGTCTATCTTCTCATCAATTATCAGCATCCTGATGATGCTAATCAAGCCTATTTCCCCAAATTCGTTGTCGTTTTTGGCCTCTCAATCGCCGCCATTTCAATTCTCATGTTACCGGCCGATGTTGCAAATCGGCAGGCTTGTCAACACGCGATTTATAATGGAGCTTGTAATCTCACGCTCCCGATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCCTTTGCTATGTTCTACTACGAAGGCGACCAGGATAA...................................................................................GACAATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATTGTGTGTGCTTTGTTGCTTGGAATTTTATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCGCTGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCCTTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E437202" ref_strand="+" ref_description="SGN-E437202 [cSTA-3-C21]">
      <seq>gttttttttttttttttgaaaacccagatctgaaaaagggcctctgttcatcaaatttcaaacccaaaccctaaattcttctcattcacacgttgttccgattcgaatcaaccttcaaaattgatccgaatcgagaaatcttcacacaacaatgggggatttcaatctcgccttggttattgtagccatagtcgtatgtattctcgttttcatattcaatgtctatcttctcatcaattatcagcatcctgatgatgctaatcaagcctatttccccaaattcgttgtcgtttttggcctctcaatcgccgccatttcaattctcatgttaccggccgatgttgcaaatcggcaggcttgtcaacacgcgatttataatggagcttgtaatctcacgctcccgatgaagcaactatggcttgctatctacattgttgatgctattctcgttttcttcgtcattccctttgctatgttctactacgaaggcgaccaggataagacaattgccaaaaggcttaaaagtgcaatgtgttgggtgttggtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="91204" stop="89981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90914" g_stop="90412" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83">
            <donor d_prob="0.553" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90328" g_stop="90281" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="549" r_length="48" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E437202" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90914" e_stop="90412"/>
          <exon e_start="90328" e_stop="90281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCCCCTTTCTTTTCGAAAACCCAGATCTGAAAAAGGGTCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAAGTACGTGAATTTGAACAATTTTGGATGTGATGTGTATGGTATGGTATTGCTGTTCTGATGTTTTTATTTTCTGTTTTCTGTAGGACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCAC</genome_strand>
        <mrna_strand>GTTTTTT-TTTTT-TTTTTGAAAACCCAGATCTGAAAAAGGGCCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTGTTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATAGTCGTATGTATTCTCGTTTTCATATTCAATGTCTATCTTCTCATCAATTATCAGCATCCTGATGATGCTAATCAAGCCTATTTCCCCAAATTCGTTGTCGTTTTTGGCCTCTCAATCGCCGCCATTTCAATTCTCATGTTACCGGCCGATGTTGCAAATCGGCAGGCTTGTCAACACGCGATTTATAATGGAGCTTGTAATCTCACGCTCCCGATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCCTTTGCTATGTTCTACTACGAAGGCGACCAGGATAA...................................................................................GACAATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E447108" ref_strand="+" ref_description="SGN-E447108 [cSTA-24-F9]">
      <seq>gatctgaaaaagggcctctgttcatcaaatttcaaacccaaaccctaaattcttctcattcacaccgttgttccgattcgaatcaaccttcaaaattgatctgaatcgagaaatcttcacacaacaatgggggatttcaatctcgccttggttattgtagccatagtcgtatgtattctcgttttcatattcaatgtctatcttctcatcaattatcagcatcctgatgatgctaatcaagcctatttccccaaattcgttgtcgtttttggcctctcaatcgccgccatttcaattctcatgttaccggccgatgttgcaaatcggcaggcttgtcaacacgcgatttataatggagcttgtaatctcacgctcccgatgaagcaactatggcttgctatctacattgttgatgctattctcgttttcttcgtcattccctttgctatgttctactacgaaggcgaccaggataagacaattgccaaaaggcttaaaagtgcaatgtgttgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="91186" stop="89989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90886" g_stop="90412" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83">
            <donor d_prob="0.553" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90328" g_stop="90289" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="516" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E447108" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90886" e_stop="90412"/>
          <exon e_start="90328" e_stop="90289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGAAAAAGGGTCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACA-CGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAAGTACGTGAATTTGAACAATTTTGGATGTGATGTGTATGGTATGGTATTGCTGTTCTGATGTTTTTATTTTCTGTTTTCTGTAGGACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTG</genome_strand>
        <mrna_strand>GATCTGAAAAAGGGCCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACCGTTGTTCCGATTCGAATCAACCTTCAAAATTGATCTGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATAGTCGTATGTATTCTCGTTTTCATATTCAATGTCTATCTTCTCATCAATTATCAGCATCCTGATGATGCTAATCAAGCCTATTTCCCCAAATTCGTTGTCGTTTTTGGCCTCTCAATCGCCGCCATTTCAATTCTCATGTTACCGGCCGATGTTGCAAATCGGCAGGCTTGTCAACACGCGATTTATAATGGAGCTTGTAATCTCACGCTCCCGATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCCTTTGCTATGTTCTACTACGAAGGCGACCAGGATAA...................................................................................GACAATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E400011" ref_strand="+" ref_description="SGN-E400011 [cSTC-4-C11]">
      <seq>agcaaatccgcccgttctctttttccccttcttttcgaaaacccagatctgaaaaagggcctctggtcatcaaatttcaaacccaaaccctaaattcttctcattcacacgttgttccgattcgaatcaaccttcaaaattgatctgaatcgagaaatcttcacacaacaatgggggatttcaatctcgccttggttattgtagccatagtcgtatgtattctcgttttcatattcaatgtctatcttctcatcaattattcatcatcctgatgatgcttatcaagcctatttccccaaatttcgttggcggttttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="-" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="91232" stop="90315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90932" g_stop="90615" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="-" ref_id="SGN-E400011" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90932" e_stop="90615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATCCGCCCGTCCTGTTTTTCCCCTTTCTTTTCGAAAACCCAGATCTGAAAAAGGGTCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTA-TCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTT-GTTGTCGTTTTTGGC</genome_strand>
        <mrna_strand>AGCAAATCCGCCCGTTCTCTTTTTCCCC-TTCTTTTCGAAAACCCAGATCTGAAAAAGGGCCTCTGGTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTGTTCCGATTCGAATCAACCTTCAAAATTGATCTGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATAGTCGTATGTATTCTCGTTTTCATATTCAATGTCTATCTTCTCATCAATTATTCATCATCCTGATGATGCTTATCAAGCCTATTTCCCCAAATTTCGTTGGCGGTTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E314773" ref_strand="+" ref_description="SGN-E314773 [cTOA-20-B3]">
      <seq>tgaagccacgttcagttcaatcacggactcttcgcatcactttaaaattttaaatttatttctttccacaattttctccaaaatcacaatttttacatcttcttcagaatggaggaatcagattggaatcagtcattttcgtcggagattagggatgagcaatttaccggtgatgtatcgatatcgcgacacgaggaggaggtaccagtgattgacgatgatgatcggcggcctccgttgccgtttcctgagaggaataatgtttttcacaatgcaccttattttccggcgactgacaatgaggaagttgtgcggttagacagagatgatacatgttcttacattgtagttattctcactttctggctcttcggtaatttgcagcttggaccaaattccctcatcctgataaaacctaattccttatttgtgaaaaatataaagggtggaagagatggatgatgctaaacatagaccaacggtgtatggggtctatgaaaatccatctnctgatgntcnntgcactttctctgaagcttacataacctctcttccctgcaacactataaagcatggatatattacttgaatcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="96009" stop="99057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96309" g_stop="96681" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96682" i_stop="98363" i_length="1682">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.682" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98364" g_stop="98434" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="445" r_length="72" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98435" i_stop="98521" i_length="87">
            <donor d_prob="0.893" d_score="0.90"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98522" g_stop="98647" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="571" r_length="126" r_score="0.849"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98648" i_stop="98731" i_length="84">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98732" g_stop="98757" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="596" r_length="25" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-E314773" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96309" e_stop="96681"/>
          <exon e_start="98364" e_stop="98434"/>
          <exon e_start="98522" e_stop="98647"/>
          <exon e_start="98732" e_stop="98757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCACGTTCAGTTCAATCACGGACTCTTCGCATCACTTTAAAATTTTAAATTTATTTCTTTCCACAATTTTCTCCAAAATCACAATTTTTACATCTTCTTCAGAATGGAGGAATCAGATTGGAATCAGTCATTTTCGTCGGAGATTAGGGATGAGCAATTTACCGGTGATGTATCGATATCGCGACACGAGGAGGAGGTACCAGTGATTGACGATGATGATCGGCGGCCTCCGTTGCCGTTTCCTGAGAGGAATAATGTTTTTCACAATGCACCTTATTTTCCGGCGACTGACAATGAGGAAGTTGTGCGGTTAGACAGAGATGATACATGTTCTTACATTGTAGTTATTCTCACTTTCTGGCTCTTCGGTAATTTTTTTTCTCCCAAAATCTGTGGATGTTGTTTGCCTTTCTTTTTCATTTTTATTTGATTATCGTTGCAGCTCTGAAAACTGAAAATAAGATAAAATGATGATATTTGGATATGTTCACTTGTGCTTTTTTTTTTCTTTCCATCATACAGTTGCGTCTCAACCATTCATTGTTCCGCTTTAGCTCCCTAAGTTATGACTACCTTTTTATTAAAATATATCTCAGTCATTAGTCAGCGAAATGTTTAATTCCAATGGACAATAGATGTGTGGAGGCCAACTTAGCATCGGAGTATGTTTTAATACAAATATACGAAACGATGTATAGTTGAGGTATGATACTTTTATTCCTATACTCAGGCATTGAAGTGTGTTTTTAATACTAATGGAATGATGGTTAGGTAGTTAAATGAAACAATGGACTGTTGAGGTATGAAACTCACAAAGAAAGTGATAGTATAAGTGTATTTAACAACAACTATTATGGCTCAATCTCAACTGAAACATGGTAGCTGTATGAAGTTTGCACTATCCGTTTCGCTTCATTATTTTATTCCGTGAAGTCTGACCTGTTTCATTCCGACATTTGATTATTTGGGGTTCTCTAAGACTAATTTACATAATTTTTCTACTATTATATAAATCTATATACAGTCTAAAAAAGTTCTTGCAAAAACAGCTTCTCCTGTAAGTGTAGCTATATGACTAAGCTTTAATACCTACCAGTCAGTGTTTTCTTTTTGCATTCTGTTTTTTGTTAAGTCTCATGGATTCGAGAATATTTTATTTGATTTTAGGTCTATCTCTTTCCTGTTAGAACTTTCAATTATTATGGTTTCACACCTATAAACTTGCACATTTAGAGATCTTAGTAGGACACAACCAAACCATCTCAGACGATCTTTCTCGTCATGGATACACAACTTGATGAGTACACATCAAGTATTTATTCTCGTATGAGATCATTTTTTGTTTTGTTTATTCTCGTATGACTACATATCCATCTTGCTATTTGCATTTATGTGATGCTCATCTTGCGCAAGTGTTGAGGCTTATATGTAACAAATTTACGGATGTCTTTTGAAAGAAGGGGAATCAAGATAACAACTACAATTGTCATACTAATTTGCTGGAGAGTGTAAATTTTATGCACATGTGAAGTTGACTGGGACTAGGTCAGTGTGTAGGTTGATGTGGAGTTTGGGGGGAAGAATGTTGGCTGCTAATGGTAGTGTGTTTCTCCAAATGATAATGCATATCGTAGCTTTTGATGACTTCACTCGTTGGGTTTACATTGTGGGATACTAAAATTTTATGAATCACTCGACTATCGTAATTGATCACTTAGCATGCTCATATTATTAGTATTTACTTAAAAGGTTTAATTCCTACGCAAATAGATCGTAAGAATCATTCGTATTTAAAATTTTTTTCTCTCTGACATTTTTCCTGGTGAACACAATATTTAACACTTCAGAGCTTCCTTTGTGGAAATAATTTCTCTTTACTCCAGTATCTATGACTTTTATAGAAAATATTCACGTTAATATGCTTGTGCATTTCTGTTTTCTTGCTTATTTTCTTTCACTAAAGACGTTTGATACTTGAGAGCTTGCCTTGATTAATGCTTTCTCTTTTCTTCAGTCTATATGACTTTGATACTCGGAGTTTATGGGCCAGGTAATTTGCAGCTTGGACCAAATTCCTCAATCCTGATAAAACCTAATTCCTTATTTGTGAAAAATATAAA-GGTAAAATGTGTAATGTCTTAGCTTGTTTTTTTTTTTGTATATTCTCTAAGCTCGTAGTTTGACAAAACAATGTGTCCCTTCTACAAGGTGGAAGAGATGGATGATGCTAACAATAGACCAACGGTGTATGGGTTCTATGAAAATCCATCTCTTGATGTTCTTGCAACTTCTTCTGAAGCTTACATAACCTCTCTTCCTGCAAACACTAATAAGGCACGACGTGACTTTAAATTTCTTTCGAGTCTCTAATGCCTATAGAGGATTGTTTAATGAATTATCTTGTGTTTGATTTTACAGCAATGGATATATTACTTGAATCAAGG</genome_strand>
        <mrna_strand>TGAAGCCACGTTCAGTTCAATCACGGACTCTTCGCATCACTTTAAAATTTTAAATTTATTTCTTTCCACAATTTTCTCCAAAATCACAATTTTTACATCTTCTTCAGAATGGAGGAATCAGATTGGAATCAGTCATTTTCGTCGGAGATTAGGGATGAGCAATTTACCGGTGATGTATCGATATCGCGACACGAGGAGGAGGTACCAGTGATTGACGATGATGATCGGCGGCCTCCGTTGCCGTTTCCTGAGAGGAATAATGTTTTTCACAATGCACCTTATTTTCCGGCGACTGACAATGAGGAAGTTGTGCGGTTAGACAGAGATGATACATGTTCTTACATTGTAGTTATTCTCACTTTCTGGCTCTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTGCAGCTTGGACCAAATTCCCTCATCCTGATAAAACCTAATTCCTTATTTGTGAAAAATATAAAGG.......................................................................................GTGGAAGAGATGGATGATGCTAAACATAGACCAACGGTGTATGGGGTCTATGAAAATCCATCTNCTGATGNTCNNTGCACTTTCTCTGAAGCTTACATAACCTCTCTTCCCTGCAACACTATAAAG....................................................................................C-ATGGATATATTACTTGAATCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E330381" ref_strand="+" ref_description="SGN-E330381 [cTOD-4-K1]">
      <seq>aagagccgagtgggatccaggagagagtttcggctgggggttccacaacaaccagatctgatggagataatgttaatttgcaaccacttgttgcaatgtttggtactttagttgcccagggtgaaaaggctgcagcgtctttagatattttaatctctagtatatcagctgacttgctagcagatgttgtgatggctaatatgagaaatctaccttcaaatcagccaaaagctgttgatgatgaagagccacctctgaagccagagaatgtctctgattttagacgattattattactgttgatagacgctatttcccagtccactatgttagcagaacaagatgagagagctgatcaaaatttggtctcgatcgagccggagctgcaaaaaactaaagtggcagaagagcaccttgatcctgccactactaatggtacatttgatgccctaaattgtgcaagtgaagaagcaccagaatatgtaactgagcctctttcttctacaaagggtacccctcaactaatcgaaaatgatgtctcatccttgcaatgtgatgtcgctgacattgagaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="107905" stop="109248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108205" g_stop="108587" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108588" i_stop="108753" i_length="166">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108754" g_stop="108948" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="578" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-E330381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108205" e_stop="108587"/>
          <exon e_start="108754" e_stop="108948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCCGAGTGGGATCCAGGAGAGAGTTTCGGCTGGGGGTTCCACAACAACCAGATCTGATGGAGATAATGTTAATTTGCAACCACTTGTTGCAATGTTTGGTACTTTAGTTGCCCAGGGTGAAAAGGCTGCAGCGTCTTTAGATATTTTAATCTCTAGTATATCAGCTGACTTGCTAGCAGATGTTGTGATGGCTAATATGAGAAATCTACCTTCAAATCAGCCAAAAGCTGTTGATGATGAAGAGCCACCTCTGAAGCCAGAGAATGTCTCTGATTTTAGACGATTATTATTACTGTTGATAGACGCTATTTCCCAGTCCACTATGTTAGCAGAACAAGATGAGAGAGCTGATCAAAATTTGGTCTCGATCGAGCCGGAGGTCTATAATGCATTTTCTAATTCCTCAATATATTTTCCTTATCTTTTCCACTTTCAAGGGAGCACATAAGTAAAAGCCCTTGTCGGACTTCTAATTGGTTTATGTAGCTCTCTGCTTAAGCTCTTAATTTTGTTACTTATGGGCTTCTTTTTTAAACATTTTTCAGCTGCAAAAAACTAAAGTGGCAGAAGAGCACCTTGATCCTGCCACTACTAATGGTACATTTGATGCCCTAAATTGTGCAAGTGAAGAAGCACCAGAATATGTAACTGAGCCTCTTTCTTCTACAAAGGGTACCCCTCAACTAATCGAAAATGATGTCTCATCCTTGCAATGTGATGTCGCTGACATTGAGAAAACT</genome_strand>
        <mrna_strand>AAGAGCCGAGTGGGATCCAGGAGAGAGTTTCGGCTGGGGGTTCCACAACAACCAGATCTGATGGAGATAATGTTAATTTGCAACCACTTGTTGCAATGTTTGGTACTTTAGTTGCCCAGGGTGAAAAGGCTGCAGCGTCTTTAGATATTTTAATCTCTAGTATATCAGCTGACTTGCTAGCAGATGTTGTGATGGCTAATATGAGAAATCTACCTTCAAATCAGCCAAAAGCTGTTGATGATGAAGAGCCACCTCTGAAGCCAGAGAATGTCTCTGATTTTAGACGATTATTATTACTGTTGATAGACGCTATTTCCCAGTCCACTATGTTAGCAGAACAAGATGAGAGAGCTGATCAAAATTTGGTCTCGATCGAGCCGGAG......................................................................................................................................................................CTGCAAAAAACTAAAGTGGCAGAAGAGCACCTTGATCCTGCCACTACTAATGGTACATTTGATGCCCTAAATTGTGCAAGTGAAGAAGCACCAGAATATGTAACTGAGCCTCTTTCTTCTACAAAGGGTACCCCTCAACTAATCGAAAATGATGTCTCATCCTTGCAATGTGATGTCGCTGACATTGAGAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E212634" ref_strand="+" ref_description="SGN-E212634 [cLEC-73-C7]">
      <seq>ctgcagcgtctttagatattttaatctctagtatatcagctgacttgctagcagatgttgtgatggctaatatgagaaatctaccttcaaatcagccaaaagctgttgatgatgaagagccacctctgaagccagagaatgtctctgattttagacgattattattactgttgatagacgctatttcccagtccactatgttagcagaacaagatgagagagctgatcaaaatttggtctcgatcgagccggagctgcaaaaaactaaagtggcagaagagcaccttgatcctgccactactaatggtacatttgatgccctaaattgtgcaagtgaagaagcaccagaatatgtaactgagcctctttcttctacaaagggtacccctcaactaatcgaaaatgatgtctcatccttgcaatgtgatgtcgctgacattgagaaaactgaggattccatacctggtctagattctgtagctctcaaagatgaagaatcagatcttgtagctgtttcagcatttggtacaactgaagttgaagatggtactcaagatcaagggtctagtgtagttaggtcatctttggaagtagttccatcaaattcaactgataggtcggaggagcttagtccaaaagcagctgtaacagatgtaaccagcatgaactcatcaacagctacttctattgggctttctccgcagttgcttctacccaagatatctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="108034" stop="109528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108334" g_stop="108587" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108588" i_stop="108753" i_length="166">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108754" g_stop="109228" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="729" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-E212634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108334" e_stop="108587"/>
          <exon e_start="108754" e_stop="109228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGCGTCTTTAGATATTTTAATCTCTAGTATATCAGCTGACTTGCTAGCAGATGTTGTGATGGCTAATATGAGAAATCTACCTTCAAATCAGCCAAAAGCTGTTGATGATGAAGAGCCACCTCTGAAGCCAGAGAATGTCTCTGATTTTAGACGATTATTATTACTGTTGATAGACGCTATTTCCCAGTCCACTATGTTAGCAGAACAAGATGAGAGAGCTGATCAAAATTTGGTCTCGATCGAGCCGGAGGTCTATAATGCATTTTCTAATTCCTCAATATATTTTCCTTATCTTTTCCACTTTCAAGGGAGCACATAAGTAAAAGCCCTTGTCGGACTTCTAATTGGTTTATGTAGCTCTCTGCTTAAGCTCTTAATTTTGTTACTTATGGGCTTCTTTTTTAAACATTTTTCAGCTGCAAAAAACTAAAGTGGCAGAAGAGCACCTTGATCCTGCCACTACTAATGGTACATTTGATGCCCTAAATTGTGCAAGTGAAGAAGCACCAGAATATGTAACTGAGCCTCTTTCTTCTACAAAGGGTACCCCTCAACTAATCGAAAATGATGTCTCATCCTTGCAATGTGATGTCGCTGACATTGAGAAAACTGAGGATTCCATACCTGGTCTAGATTCTGTAGCTCTCAAAGATGAAGAATCAGATCTTGTAGCTGTTTCAGCATTTGGTACAACTGAAGTTGAAGATGGTACTCAAGATCAAGGGTCTAGTGTAGTTAGGTCATCTTTGGAAGTAGTTCCATCAAATTCAACTGATAGGTCGGAGGAGCTTAGTCCAAAAGCAGCTGTAACAGATGTAACCAGCATGAACTCATCAACAGCTACTTCTATTGGGCTTTCTCCGCAGTTGCTTCTACCCAAGATATCTGCTC</genome_strand>
        <mrna_strand>CTGCAGCGTCTTTAGATATTTTAATCTCTAGTATATCAGCTGACTTGCTAGCAGATGTTGTGATGGCTAATATGAGAAATCTACCTTCAAATCAGCCAAAAGCTGTTGATGATGAAGAGCCACCTCTGAAGCCAGAGAATGTCTCTGATTTTAGACGATTATTATTACTGTTGATAGACGCTATTTCCCAGTCCACTATGTTAGCAGAACAAGATGAGAGAGCTGATCAAAATTTGGTCTCGATCGAGCCGGAG......................................................................................................................................................................CTGCAAAAAACTAAAGTGGCAGAAGAGCACCTTGATCCTGCCACTACTAATGGTACATTTGATGCCCTAAATTGTGCAAGTGAAGAAGCACCAGAATATGTAACTGAGCCTCTTTCTTCTACAAAGGGTACCCCTCAACTAATCGAAAATGATGTCTCATCCTTGCAATGTGATGTCGCTGACATTGAGAAAACTGAGGATTCCATACCTGGTCTAGATTCTGTAGCTCTCAAAGATGAAGAATCAGATCTTGTAGCTGTTTCAGCATTTGGTACAACTGAAGTTGAAGATGGTACTCAAGATCAAGGGTCTAGTGTAGTTAGGTCATCTTTGGAAGTAGTTCCATCAAATTCAACTGATAGGTCGGAGGAGCTTAGTCCAAAAGCAGCTGTAACAGATGTAACCAGCATGAACTCATCAACAGCTACTTCTATTGGGCTTTCTCCGCAGTTGCTTCTACCCAAGATATCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E285976" ref_strand="+" ref_description="SGN-E285976 [cLES-13-N11]">
      <seq>ccttgatcctgccactactaatggtacatttgatgccctaaattgtgcaagtgaagaagcaccagaatatgtaactgagcctctttcttctacaaagggtgcccctcaactaatcgaaaatgatgtctcatccttgcaatgtgatgtccctgacattgagaaaactgaggattccatacctggtctagattctgtagctctcaaagatgaagaatcagatcttgtagctgtttcagcatttggtacaactgaagttgaagatggtactcaagatcaagggtctagtgtagttaggtcatctttggaagtagttccatcaaattcaactgataggtcggaggagcttagtccaaaagcagctgtaacagatgtaaccagcatgaactcatcaacagctacttctattgggctttctccgcagttgcttctacccaagatatctgctccagttatcaacctctctgaagaagagaaggacaatttacagaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="108483" stop="109574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108783" g_stop="109274" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-E285976" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108783" e_stop="109274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTGATCCTGCCACTACTAATGGTACATTTGATGCCCTAAATTGTGCAAGTGAAGAAGCACCAGAATATGTAACTGAGCCTCTTTCTTCTACAAAGGGTACCCCTCAACTAATCGAAAATGATGTCTCATCCTTGCAATGTGATGTCGCTGACATTGAGAAAACTGAGGATTCCATACCTGGTCTAGATTCTGTAGCTCTCAAAGATGAAGAATCAGATCTTGTAGCTGTTTCAGCATTTGGTACAACTGAAGTTGAAGATGGTACTCAAGATCAAGGGTCTAGTGTAGTTAGGTCATCTTTGGAAGTAGTTCCATCAAATTCAACTGATAGGTCGGAGGAGCTTAGTCCAAAAGCAGCTGTAACAGATGTAACCAGCATGAACTCATCAACAGCTACTTCTATTGGGCTTTCTCCGCAGTTGCTTCTACCCAAGATATCTGCTCCAGTTATCAACCTCTCTGAAGAAGAGAAGGACAATTTACAGAAGTC</genome_strand>
        <mrna_strand>CCTTGATCCTGCCACTACTAATGGTACATTTGATGCCCTAAATTGTGCAAGTGAAGAAGCACCAGAATATGTAACTGAGCCTCTTTCTTCTACAAAGGGTGCCCCTCAACTAATCGAAAATGATGTCTCATCCTTGCAATGTGATGTCCCTGACATTGAGAAAACTGAGGATTCCATACCTGGTCTAGATTCTGTAGCTCTCAAAGATGAAGAATCAGATCTTGTAGCTGTTTCAGCATTTGGTACAACTGAAGTTGAAGATGGTACTCAAGATCAAGGGTCTAGTGTAGTTAGGTCATCTTTGGAAGTAGTTCCATCAAATTCAACTGATAGGTCGGAGGAGCTTAGTCCAAAAGCAGCTGTAACAGATGTAACCAGCATGAACTCATCAACAGCTACTTCTATTGGGCTTTCTCCGCAGTTGCTTCTACCCAAGATATCTGCTCCAGTTATCAACCTCTCTGAAGAAGAGAAGGACAATTTACAGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-WdjcJJ/sgn_ests_tomato_potato" ref_id="SGN-E447586" ref_strand="+" ref_description="SGN-E447586 [cSTA-27-D7]">
      <seq>cttcggagctaaacccttggaaatttctacaaacacatatattgtgcgattatatgaatcatgaggggcacgagttgacattgcgtgtcctctacaggttgtatgggcatgcagaagaagaccaggatttcttttcttcaacagctgcagcatccgtatatgaaacatttctacttacagtggcagaaacacttagagattcttttccagcttctgacaaatctctaagtagattgcttggtgaagctcctcacttaccaaattctactctcaagttgttagagagcttctgttgtcctggtagttgtgaaaaggatgagaaggagttgcatagtggagatcgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026I24-88dfA/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026I24.3" temp_strand="+" temp_description="C09HBa0026I24.3  EF647616.2 htgs_phase:2 submitted_to_sgn_as:gb|EF647616| upload_account_name:spain (1 - 111899)">
        <position start="109178" stop="110740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109478" g_stop="109542" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109543" i_stop="110073" i_length="531">
            <donor d_prob="0.838" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110074" g_stop="110190" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="182" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110191" i_stop="110276" i_length="86">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110277" g_stop="110440" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="346" r_length="164" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026I24.3" gen_strand="+" ref_id="SGN-E447586" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026I24.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109478" e_stop="109542"/>
          <exon e_start="110074" e_stop="110190"/>
          <exon e_start="110277" e_stop="110440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGGAGCTAAACCCTTGGAAATTTCTACAAACACATATATTGTCCGATTATATGAATCATGAGGTAATTGACTATCATGTTATTTACTTTTTGATAAGGAATATCCTGATATTTGCTTTGCATAGTATAGTGTTAATTTGTAAAATTAATGTGGGAGTCAATAGAAAGTTGAAAAGCATGGTGAAATTCTCCAGAGATTAATGACTTATTGTAAGTTCGAATTTCTAGGTACAATGATGCAGGAGAATGAGATATAATATATGCAGATGTAACATAGATCTAAACTATGACGATTGAAATGAAGGAATATGAGTGTTATACGGCAGAAAGACACCTAATATAAATAGCATGTTGATTGTTGTCTCAGTACATGTGTGTCTCTAGGCATAGCATGTTGATTGTTGTATCCTGCGTAACCTTCTAATTGTCTCTCTTTTGTGGATCCTCTTCTGATATTTCATGGCAAAAATATTCCAGCAGCATAAGTTGAAAGTAATTGTAGTATTTTTCTTAGTTCAGTTCTGTACCTTTTGATTAAGTCATATTTATACCTTTTAATTGTGTTAGTGTTGACTAATCATTGGATGTCTTTAGGGGCACGAGTTGACATTGCGTGTCCTCTACAGGTTGTATGGGCATGCAGAAGAAGACCAGGATTTCTTTTCTTCAACAGCTGCAGCATCCGTATATGAAACATTTTTACTTGCAGTGGTATGTATATGTTCCTCCTTCCTGGTGCACTTTTTTTGGATTAGGTAAATGCTTTGCATTCTTTTGATTTCCTCTATATTTTGTAGGCAGAAACACTTAGAGATTCTTTTCCAGCTTCTGACAAATCTCTAAGTAGATTGCTGTGTGAAGCTCCTCACTTACCAAATTCTACTCTCAAGTTGTTAGAGAGCTTCTGTTGTCCTGGTAGTTGTGAAAAGGATGAGAAGGAGTTGCATAGTGGAGATCGAGT</genome_strand>
        <mrna_strand>CTTCGGAGCTAAACCCTTGGAAATTTCTACAAACACATATATTGTGCGATTATATGAATCATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCACGAGTTGACATTGCGTGTCCTCTACAGGTTGTATGGGCATGCAGAAGAAGACCAGGATTTCTTTTCTTCAACAGCTGCAGCATCCGTATATGAAACATTTCTACTTACAGTG......................................................................................GCAGAAACACTTAGAGATTCTTTTCCAGCTTCTGACAAATCTCTAAGTAGATTGCTTGGTGAAGCTCCTCACTTACCAAATTCTACTCTCAAGTTGTTAGAGAGCTTCTGTTGTCCTGGTAGTTGTGAAAAGGATGAGAAGGAGTTGCATAGTGGAGATCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>101</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="28277" PGL_stop="28789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28277" e_stop="28789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28277" e_stop="28789" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28277" stop="28789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTACACATAACAATCTGTTCCCACACACATTTACAACTCTTACCTTTTGGTCCGCAGTTGATGTGGTTGCTCCTCTACTCGTACTGTTGTGAATCATGCAGAAATCGTTCGCTCAAAATCTCGTAAAACTATCATCACTACCACTAATTCTTGTTCTCATCTTCTGTTGTTTGGTTATGATGGTTTCAGCTAGAGGTAACTCTTTTGATACTAGTTTAGTTGCAAAGCTATATTTAAACTCCGTCTATTTCAGTTTGTTTGTTTGATTTTGACTTGGACGAGGTTTAGAGTAGTAAAAAGAATACTTTTAAATCTTCTGCATCTTTAACTAAAAGATAAGTAAAATGTATCAAATAGAGTTGTCGTTTAGTTTTAGATATCCTTTGGTAATTCATTTGTAAAGACATTATTCAGGCTCTCATGTGACTAATCCTGGTGTTGAGTCTGATGACGATGCTATGAAGCAAGACGAAACATCATTGAGGAAACGATTAGAGCCATTGCATCGCGA</gDNA_template>
            <first_frame> I  Y  T  *  Q  S  V  P  T  H  I  Y  N  S  Y  L  L  V  R  S  *  C  G  C  S  S  T  R  T  V  V  N  H  A  E  I  V  R  S  K  S  R  K  T  I  I  T  T  T  N  S  C  S  H  L  L  L  F  G  Y  D  G  F  S  *  R  *  L  F  *  Y  *  F  S  C  K  A  I  F  K  L  R  L  F  Q  F  V  C  L  I  L  T  W  T  R  F  R  V  V  K  R  I  L  L  N  L  L  H  L  *  L  K  D  K  *  N  V  S  N  R  V  V  V  *  F  *  I  S  F  G  N  S  F  V  K  T  L  F  R  L  S  C  D  *  S  W  C  *  V  *  *  R  C  Y  E  A  R  R  N  I  I  E  E  T  I  R  A  I  A  S  R </first_frame>
            <second_frame>  F  T  H  N  N  L  F  P  H  T  F  T  T  L  T  F  W  S  A  V  D  V  V  A  P  L  L  V  L  L  *  I  M  Q  K  S  F  A  Q  N  L  V  K  L  S  S  L  P  L  I  L  V  L  I  F  C  C  L  V  M  M  V  S  A  R  G  N  S  F  D  T  S  L  V  A  K  L  Y  L  N  S  V  Y  F  S  L  F  V  *  F  *  L  G  R  G  L  E  *  *  K  E  Y  F  *  I  F  C  I  F  N  *  K  I  S  K  M  Y  Q  I  E  L  S  F  S  F  R  Y  P  L  V  I  H  L  *  R  H  Y  S  G  S  H  V  T  N  P  G  V  E  S  D  D  D  A  M  K  Q  D  E  T  S  L  R  K  R  L  E  P  L  H  R   </second_frame>
            <third_frame>   L  H  I  T  I  C  S  H  T  H  L  Q  L  L  P  F  G  P  Q  L  M  W  L  L  L  Y  S  Y  C  C  E  S  C  R  N  R  S  L  K  I  S  *  N  Y  H  H  Y  H  *  F  L  F  S  S  S  V  V  W  L  *  W  F  Q  L  E  V  T  L  L  I  L  V  *  L  Q  S  Y  I  *  T  P  S  I  S  V  C  L  F  D  F  D  L  D  E  V  *  S  S  K  K  N  T  F  K  S  S  A  S  L  T  K  R  *  V  K  C  I  K  *  S  C  R  L  V  L  D  I  L  W  *  F  I  C  K  D  I  I  Q  A  L  M  *  L  I  L  V  L  S  L  M  T  M  L  *  S  K  T  K  H  H  *  G  N  D  *  S  H  C  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026I24.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="36534" PGL_stop="35052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36534" e_stop="36323"/>
            <exon e_start="36172" e_stop="36059"/>
            <exon e_start="35676" e_stop="35616"/>
            <exon e_start="35540" e_stop="35420"/>
            <exon e_start="35304" e_stop="35206"/>
            <exon e_start="35125" e_stop="35052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.150" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.967" e_score="0.983"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="0.980"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36534" e_stop="36323" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.936">
            <gDNA_intron_boundary i_start="36322" i_stop="36173" i_length="150"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36172" e_stop="36059" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36058" i_stop="35677" i_length="382"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35676" e_stop="35616" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.150">
            <gDNA_intron_boundary i_start="35615" i_stop="35541" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="35540" e_stop="35420" e_length="121"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.967">
            <gDNA_intron_boundary i_start="35419" i_stop="35305" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="35304" e_stop="35206" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35205" i_stop="35126" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.932">
            <gDNA_exon_boundary e_start="35125" e_stop="35052" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36534" stop="36323"/>
              <exon start="36172" stop="36059"/>
              <exon start="35676" stop="35616"/>
              <exon start="35540" stop="35420"/>
              <exon start="35304" stop="35206"/>
              <exon start="35125" stop="35052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATTATTGATATTATAATTATTTGAGTGAAAGGTAAAATAACCGGGATACTTCAGGTGTGTTTTTGACCTTTCACTCTCTCAATTCTTTTGTTTGATCATTTTACGGATTTCTCCTTGTAACATTTCCGGATAACCTAATATTGATGACAGGAGGAAGTCTGGGAAGTAGCAGCTGAGCTGCTAGGTCTTTCTCTCGGCATACTAGCTTTG : GATACACCTGGTATCTCAAAGTCTTATCCTACATTGGCATTAACATGGTTAAGTGTGCGGATCCTACATCTTTGGTTTCGCTATCAGTCTCTTTCAGTTCTGCAATTCAACACG : ATAAATCTCAAACGGGCTCGCATATTAGTGAACTCTCATGTTTTACACTGTACAGTCCCAG : GAATCAATGAATGCAATAGGATGGAGAGCATCTTATTGTGGGAAAGATTCTTAAGGCCACGAATTATTTTTGAGATATCTTTGGAGGAGATGATCAATGCGGGCAAATACAGATCCAAGGT : CAAATCAAGAAACTCATTCATATGTACAAGGAGGAAAACTATTTTCTTGTAGTAAATGAACAGAAGGCAGCGGATTTTCAGGTCTTTGTATCTTTCAAG : GAAGGAGCCTCAAGCCTATCCGTTTTTCGAAGTATATGGCAAACCTATTGGCTATATCAAAACTGGGGCTGGTC</gDNA_template>
            <first_frame> *  L  L  I  L  *  L  F  E  *  K  V  K  *  P  G  Y  F  R  C  V  F  D  L  S  L  S  Q  F  F  C  L  I  I  L  R  I  S  P  C  N  I  S  G  *  P  N  I  D  D  R  R  K  S  G  K  *  Q  L  S  C  *  V  F  L  S  A  Y  *  L  W :   I  H  L  V  S  Q  S  L  I  L  H  W  H  *  H  G  *  V  C  G  S  Y  I  F  G  F  A  I  S  L  F  Q  F  C  N  S  T  R :   *  I  S  N  G  L  A  Y  *  *  T  L  M  F  Y  T  V  Q  S  Q  :  E  S  M  N  A  I  G  W  R  A  S  Y  C  G  K  D  S  *  G  H  E  L  F  L  R  Y  L  W  R  R  *  S  M  R  A  N  T  D  P  R   : S  N  Q  E  T  H  S  Y  V  Q  G  G  K  L  F  S  C  S  K  *  T  E  G  S  G  F  S  G  L  C  I  F  Q   : G  R  S  L  K  P  I  R  F  S  K  Y  M  A  N  L  L  A  I  S  K  L  G  L  V </first_frame>
            <second_frame>  N  Y  *  Y  Y  N  Y  L  S  E  R  *  N  N  R  D  T  S  G  V  F  L  T  F  H  S  L  N  S  F  V  *  S  F  Y  G  F  L  L  V  T  F  P  D  N  L  I  L  M  T  G  G  S  L  G  S  S  S  *  A  A  R  S  F  S  R  H  T  S  F   : G  Y  T  W  Y  L  K  V  L  S  Y  I  G  I  N  M  V  K  C  A  D  P  T  S  L  V  S  L  S  V  S  F  S  S  A  I  Q  H   : D  K  S  Q  T  G  S  H  I  S  E  L  S  C  F  T  L  Y  S  P  R :   N  Q  *  M  Q  *  D  G  E  H  L  I  V  G  K  I  L  K  A  T  N  Y  F  *  D  I  F  G  G  D  D  Q  C  G  Q  I  Q  I  Q  G  :  Q  I  K  K  L  I  H  M  Y  K  E  E  N  Y  F  L  V  V  N  E  Q  K  A  A  D  F  Q  V  F  V  S  F  K  :  E  G  A  S  S  L  S  V  F  R  S  I  W  Q  T  Y  W  L  Y  Q  N  W  G  W   </second_frame>
            <third_frame>   I  I  D  I  I  I  I  *  V  K  G  K  I  T  G  I  L  Q  V  C  F  *  P  F  T  L  S  I  L  L  F  D  H  F  T  D  F  S  L  *  H  F  R  I  T  *  Y  *  *  Q  E  E  V  W  E  V  A  A  E  L  L  G  L  S  L  G  I  L  A  L  :  D  T  P  G  I  S  K  S  Y  P  T  L  A  L  T  W  L  S  V  R  I  L  H  L  W  F  R  Y  Q  S  L  S  V  L  Q  F  N  T  :  I  N  L  K  R  A  R  I  L  V  N  S  H  V  L  H  C  T  V  P   : G  I  N  E  C  N  R  M  E  S  I  L  L  W  E  R  F  L  R  P  R  I  I  F  E  I  S  L  E  E  M  I  N  A  G  K  Y  R  S  K  V :   K  S  R  N  S  F  I  C  T  R  R  K  T  I  F  L  *  *  M  N  R  R  Q  R  I  F  R  S  L  Y  L  S  R :   K  E  P  Q  A  Y  P  F  F  E  V  Y  G  K  P  I  G  Y  I  K  T  G  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36385" stop="36323"/>
                    <exon start="36172" stop="36059"/>
                    <exon start="35676" stop="35616"/>
                    <exon start="35540" stop="35420"/>
                    <exon start="35304" stop="35253"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEEVWEVAAELLGLSLGILALDTPGISKSYPTLALTWLSVRILHLWFRYQSLSVLQFNTINLKRARILVNSHVLHCTVPGINECNRMESILLWERFLRPRIIFEISLEEMINAGKYRSKVKSRNSFICTRRKTIFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="39678" PGL_stop="37116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39678" e_stop="39501"/>
            <exon e_start="39363" e_stop="39304"/>
            <exon e_start="38361" e_stop="38261"/>
            <exon e_start="37943" e_stop="37885"/>
            <exon e_start="37717" e_stop="37656"/>
            <exon e_start="37573" e_stop="37495"/>
            <exon e_start="37413" e_stop="37341"/>
            <exon e_start="37205" e_stop="37116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.959" e_score="0.955"/>
          <exon-intron don_prob="0.998" acc_prob="0.913" e_score="0.983"/>
          <exon-intron don_prob="0.733" acc_prob="0.215" e_score="0.990"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.932"/>
          <exon-intron don_prob="0.000" acc_prob="0.943" e_score="0.887"/>
          <exon-intron don_prob="0.964" acc_prob="0.722" e_score="0.962"/>
          <exon-intron don_prob="0.952" acc_prob="0.996" e_score="0.959"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="39678" e_stop="39501" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.959">
            <gDNA_intron_boundary i_start="39500" i_stop="39364" i_length="137"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="39363" e_stop="39304" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.913">
            <gDNA_intron_boundary i_start="39303" i_stop="38362" i_length="942"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="38361" e_stop="38261" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.733" acc_prob="0.215">
            <gDNA_intron_boundary i_start="38260" i_stop="37944" i_length="317"/>
          </intron>
          <exon e_serial="4" e_score="0.932">
            <gDNA_exon_boundary e_start="37943" e_stop="37885" e_length="59"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37884" i_stop="37718" i_length="167"/>
          </intron>
          <exon e_serial="5" e_score="0.887">
            <gDNA_exon_boundary e_start="37717" e_stop="37656" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.943">
            <gDNA_intron_boundary i_start="37655" i_stop="37574" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="37573" e_stop="37495" e_length="79"/>
          </exon>
          <intron i_serial="6" don_prob="0.964" acc_prob="0.722">
            <gDNA_intron_boundary i_start="37494" i_stop="37414" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="0.959">
            <gDNA_exon_boundary e_start="37413" e_stop="37341" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.952" acc_prob="0.996">
            <gDNA_intron_boundary i_start="37340" i_stop="37206" i_length="135"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="37205" e_stop="37116" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39678" stop="39501"/>
              <exon start="39363" stop="39304"/>
              <exon start="38361" stop="38261"/>
              <exon start="37943" stop="37885"/>
              <exon start="37717" stop="37656"/>
              <exon start="37573" stop="37495"/>
              <exon start="37413" stop="37341"/>
              <exon start="37205" stop="37116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAACTCAAAGAGTGGCAATGGCGTTTCCTCTGCAATTCAACAACCCCATCTCAACTTTTTCATGTTCCAACCTTTATAATGGTAATAGAACTCAACCCTTTAAATTCTTGTGTACTTCTTCTCCACAATCTGATTCTTCCAATAGCAAAGAAGAAGCTATTCAAGACTCATCTTG : GGAAAATGATAAAGGGTATGTGGTTCTGGTGGAGAAGTACAGGAATGGAACTTTGAAAAG : ATACAGTTTCAGATGATTATTTGGACTACATGTTGCTTCAGTTCCCAACCAATGTAACTGGATGGATCTGTCACACGCTGGTGACTTCAAGTCTCTTAAAG : GCGGTTGGAGTGGGCTCTTTTTCCGGAACTTCCGCAGCTGCTTCAGCTGCTGCCATCAG : CTATTGTTTTTGCAGATGGGTTTCAAAGGATGGAATTGGTGCCCTTGGACGCTTTTTCATTG : GTGGACGGTTTGGCAATCTTTTTGATGATGATCCCAAACAATGGCGCATGTATGCAGATTTCATTGGTAGTGCAGGAAG : TATATTTGATCTCTGTACCCCTCTCTATCCATCTTATTTCCTACCTTTAGCTTCTCTTGGAAATCTTGCCAAG : GCTGTAGCAAGGGGGCTAAAGGACCCTTCATTCCGGGTTATACAAAACCACTTTGCTATCGCTGGAAATTTGGGAGACGTAGCAGCAAAG</gDNA_template>
            <first_frame> Q  K  L  K  E  W  Q  W  R  F  L  C  N  S  T  T  P  S  Q  L  F  H  V  P  T  F  I  M  V  I  E  L  N  P  L  N  S  C  V  L  L  L  H  N  L  I  L  P  I  A  K  K  K  L  F  K  T  H  L   : G  K  M  I  K  G  M  W  F  W  W  R  S  T  G  M  E  L  *  K   : D  T  V  S  D  D  Y  L  D  Y  M  L  L  Q  F  P  T  N  V  T  G  W  I  C  H  T  L  V  T  S  S  L  L  K  :  A  V  G  V  G  S  F  S  G  T  S  A  A  A  S  A  A  A  I  S :   Y  C  F  C  R  W  V  S  K  D  G  I  G  A  L  G  R  F  F  I   : G  G  R  F  G  N  L  F  D  D  D  P  K  Q  W  R  M  Y  A  D  F  I  G  S  A  G  S :   I  F  D  L  C  T  P  L  Y  P  S  Y  F  L  P  L  A  S  L  G  N  L  A  K  :  A  V  A  R  G  L  K  D  P  S  F  R  V  I  Q  N  H  F  A  I  A  G  N  L  G  D  V  A  A  K </first_frame>
            <second_frame>  K  N  S  K  S  G  N  G  V  S  S  A  I  Q  Q  P  H  L  N  F  F  M  F  Q  P  L  *  W  *  *  N  S  T  L  *  I  L  V  Y  F  F  S  T  I  *  F  F  Q  *  Q  R  R  S  Y  S  R  L  I  L  :  G  K  *  *  R  V  C  G  S  G  G  E  V  Q  E  W  N  F  E  K  :  I  Q  F  Q  M  I  I  W  T  T  C  C  F  S  S  Q  P  M  *  L  D  G  S  V  T  R  W  *  L  Q  V  S  *  R :   R  L  E  W  A  L  F  P  E  L  P  Q  L  L  Q  L  L  P  S   : A  I  V  F  A  D  G  F  Q  R  M  E  L  V  P  L  D  A  F  S  L  :  V  D  G  L  A  I  F  L  M  M  I  P  N  N  G  A  C  M  Q  I  S  L  V  V  Q  E   : V  Y  L  I  S  V  P  L  S  I  H  L  I  S  Y  L  *  L  L  L  E  I  L  P  R :   L  *  Q  G  G  *  R  T  L  H  S  G  L  Y  K  T  T  L  L  S  L  E  I  W  E  T  *  Q  Q   </second_frame>
            <third_frame>   K  T  Q  R  V  A  M  A  F  P  L  Q  F  N  N  P  I  S  T  F  S  C  S  N  L  Y  N  G  N  R  T  Q  P  F  K  F  L  C  T  S  S  P  Q  S  D  S  S  N  S  K  E  E  A  I  Q  D  S  S  W :   E  N  D  K  G  Y  V  V  L  V  E  K  Y  R  N  G  T  L  K  R :   Y  S  F  R  *  L  F  G  L  H  V  A  S  V  P  N  Q  C  N  W  M  D  L  S  H  A  G  D  F  K  S  L  K   : G  G  W  S  G  L  F  F  R  N  F  R  S  C  F  S  C  C  H  Q  :  L  L  F  L  Q  M  G  F  K  G  W  N  W  C  P  W  T  L  F  H  W :   W  T  V  W  Q  S  F  *  *  *  S  Q  T  M  A  H  V  C  R  F  H  W  *  C  R  K  :  Y  I  *  S  L  Y  P  S  L  S  I  L  F  P  T  F  S  F  S  W  K  S  C  Q   : G  C  S  K  G  A  K  G  P  F  I  P  G  Y  T  K  P  L  C  Y  R  W  K  F  G  R  R  S  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39307" stop="39304"/>
                    <exon start="38361" stop="38261"/>
                    <exon start="37943" stop="37885"/>
                    <exon start="37717" stop="37656"/>
                    <exon start="37573" stop="37495"/>
                    <exon start="37413" stop="37341"/>
                    <exon start="37205" stop="37116"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDTVSDDYLDYMLLQFPTNVTGWICHTLVTSSLLKAVGVGSFSGTSAAASAAAISYCFCRWVSKDGIGALGRFFIGGRFGNLFDDDPKQWRMYADFIGSAGSIFDLCTPLYPSYFLPLASLGNLAKAVARGLKDPSFRVIQNHFAIAGNLGDVAAK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39676" stop="39501"/>
                    <exon start="39363" stop="39304"/>
                    <exon start="38361" stop="38346"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTQRVAMAFPLQFNNPISTFSCSNLYNGNRTQPFKFLCTSSPQSDSSNSKEEAIQDSSWENDKGYVVLVEKYRNGTLKRYSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="48807" PGL_stop="42942"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48807" e_stop="48402"/>
            <exon e_start="46831" e_stop="46775"/>
            <exon e_start="46044" e_stop="45982"/>
            <exon e_start="45885" e_stop="45829"/>
            <exon e_start="45744" e_stop="45661"/>
            <exon e_start="45335" e_stop="45267"/>
            <exon e_start="45197" e_stop="45159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.996" e_score="0.986"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="48807" e_stop="48402" e_length="406"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="48401" i_stop="46832" i_length="1570"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46831" e_stop="46775" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46044" e_stop="45982" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.966">
            <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45885" e_stop="45829" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.823" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45828" i_stop="45745" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45744" e_stop="45661" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45660" i_stop="45336" i_length="325"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="45335" e_stop="45267" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.820" acc_prob="0.996">
            <gDNA_intron_boundary i_start="45266" i_stop="45198" i_length="69"/>
          </intron>
          <exon e_serial="7" e_score="0.950">
            <gDNA_exon_boundary e_start="45197" e_stop="45159" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48807" stop="48402"/>
              <exon start="46831" stop="46775"/>
              <exon start="46044" stop="45982"/>
              <exon start="45885" stop="45853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48807" stop="48402"/>
              <exon start="46831" stop="46775"/>
              <exon start="46044" stop="46027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48783" stop="48493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48771" stop="48402"/>
              <exon start="46831" stop="46775"/>
              <exon start="46044" stop="46027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48771" stop="48402"/>
              <exon start="46831" stop="46775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48744" stop="48402"/>
              <exon start="46831" stop="46775"/>
              <exon start="46044" stop="45982"/>
              <exon start="45885" stop="45829"/>
              <exon start="45744" stop="45661"/>
              <exon start="45335" stop="45267"/>
              <exon start="45197" stop="45159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48743" stop="48402"/>
              <exon start="46831" stop="46775"/>
              <exon start="46044" stop="45982"/>
              <exon start="45885" stop="45829"/>
              <exon start="45744" stop="45661"/>
              <exon start="45335" stop="45267"/>
              <exon start="45197" stop="45178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48737" stop="48402"/>
              <exon start="46831" stop="46775"/>
              <exon start="46044" stop="45982"/>
              <exon start="45885" stop="45829"/>
              <exon start="45744" stop="45713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48737" stop="48402"/>
              <exon start="46831" stop="46775"/>
              <exon start="46044" stop="45982"/>
              <exon start="45885" stop="45829"/>
              <exon start="45744" stop="45713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48737" stop="48516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48733" stop="48402"/>
              <exon start="46831" stop="46775"/>
              <exon start="46044" stop="45982"/>
              <exon start="45885" stop="45829"/>
              <exon start="45744" stop="45662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269944" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCCCTTATCTTGTTGACAACAGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAG : ACACATGGACTAAGAGCTGGGCAAGAAGCTGCAAAGAAAGGAATCGGATTCATTGAG : GCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAG : GTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAG : AAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAGGTGCTTGTGCTGGCATGACTTCTACTTTT : GTAACCTACCCACTCGATGTTCTCAGGTTGAGATTAGCAGTAGACCCTGGATATAAAACAATGAGTGAG : GTTGCTTTAAACATGCTGAAAGAGGAAGGCTTTGCATCC</gDNA_template>
            <first_frame> K  P  L  I  L  L  T  T  E  E  E  K  A  S  F  L  C  I  Y  H  E  E  E  P  T  R  F  G  I  H  G  H  S  G  S  *  I  V  Q  H  Q  Y  S  I  L  P  I  T  T  M  E  E  Q  I  C  R  F  C  *  F  F  *  R  N  W  V  *  F  W  L  Y  F  V  I  G  E  F  G  *  K  S  L  *  R  V  S  S  Y  N  N  S  A  F  K  A  P  F  G  Y  G  C  F  D  S  Q  R  S  C  I  V  C  C  R  C  Y  C  W  C  R  C  K  I  C  Y  C  T  S  *  P  Y  Q  A  P  H  A   : D  T  W  T  K  S  W  A  R  S  C  K  E  R  N  R  I  H  *   : G  I  C  I  D  W  E  G  G  R  Y  Q  R  I  L  E  R  K  P  S  T   : G  D  T  D  H  T  L  *  C  G  A  V  I  C  L  *  N  V  Q   : E  T  F  S  R  K  G  W  G  A  F  C  H  W  K  T  S  S  R  C  L  C  W  H  D  F  Y  F   : C  N  L  P  T  R  C  S  Q  V  E  I  S  S  R  P  W  I  *  N  N  E  *   : G  C  F  K  H  A  E  R  G  R  L  C  I  </first_frame>
            <second_frame>  N  P  L  S  C  *  Q  Q  R  K  K  K  L  H  S  S  V  S  T  M  R  K  N  R  P  V  L  V  S  M  D  I  P  A  L  E  L  S  N  T  S  I  Q  S  Y  P  S  Q  Q  W  K  N  K  F  V  G  S  A  S  F  S  K  E  I  G  C  N  F  G  C  I  S  L  S  E  N  L  D  E  K  A  F  K  G  F  H  P  T  T  T  Q  L  L  K  H  P  L  A  M  V  A  L  I  P  R  E  A  A  L  F  A  A  G  A  I  A  G  A  A  A  K  S  V  T  A  P  L  D  R  I  K  L  L  M  Q  :  T  H  G  L  R  A  G  Q  E  A  A  K  K  G  I  G  F  I  E  :  A  F  A  L  I  G  K  E  E  G  I  K  G  Y  W  K  G  N  L  P  Q  :  V  I  R  I  I  P  Y  S  A  V  Q  L  F  A  Y  E  T  Y  K  :  K  L  F  Q  G  K  D  G  E  L  S  V  I  G  R  L  A  A  G  A  C  A  G  M  T  S  T  F  :  V  T  Y  P  L  D  V  L  R  L  R  L  A  V  D  P  G  Y  K  T  M  S  E  :  V  A  L  N  M  L  K  E  E  G  F  A  S </second_frame>
            <third_frame>   T  P  Y  L  V  D  N  R  G  R  K  S  F  I  P  L  Y  L  P  *  G  R  T  D  P  F  W  Y  P  W  T  F  R  L  L  N  C  P  T  P  V  F  N  L  T  H  H  N  N  G  R  T  N  L  S  V  L  L  V  F  L  K  K  L  G  V  I  L  V  V  F  R  Y  R  R  I  W  M  K  K  P  L  K  G  F  I  L  Q  Q  L  S  F  *  S  T  L  W  L  W  L  L  *  F  P  E  K  L  H  C  L  L  Q  V  L  L  L  V  P  L  Q  N  L  L  L  H  L  L  T  V  S  S  S  S  C  R :   H  M  D  *  E  L  G  K  K  L  Q  R  K  E  S  D  S  L  R :   H  L  H  *  L  G  R  R  K  V  S  K  D  I  G  K  E  T  F  H  R :   *  Y  G  S  Y  L  I  V  R  C  S  Y  L  L  M  K  R  T  R :   N  F  F  K  E  R  M  G  S  F  L  S  L  E  D  *  Q  Q  V  L  V  L  A  *  L  L  L  L :   *  P  T  H  S  M  F  S  G  *  D  *  Q  *  T  L  D  I  K  Q  *  V  R :   L  L  *  T  C  *  K  R  K  A  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48788" stop="48402"/>
                    <exon start="46831" stop="46775"/>
                    <exon start="46044" stop="45982"/>
                    <exon start="45885" stop="45829"/>
                    <exon start="45744" stop="45661"/>
                    <exon start="45335" stop="45267"/>
                    <exon start="45197" stop="45159"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQRKKKLHSSVSTMRKNRPVLVSMDIPALELSNTSIQSYPSQQWKNKFVGSASFSKEIGCNFGCISLSENLDEKAFKGFHPTTTQLLKHPLAMVALIPREAALFAAGAIAGAAAKSVTAPLDRIKLLMQTHGLRAGQEAAKKGIGFIEAFALIGKEEGIKGYWKGNLPQVIRIIPYSAVQLFAYETYKKLFQGKDGELSVIGRLAAGACAGMTSTFVTYPLDVLRLRLAVDPGYKTMSEVALNMLKEEGFAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48784" e_stop="48248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="48784" e_stop="48248" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48784" stop="48248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48783" stop="48493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48737" stop="48516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCTGCAAAATCTGTTACTGCACCTCTTGACCGTATCAAGCTCCTCATGCAGGTTCTTTTATGAAACCCCTTTATGTAATTGTACATTCATTTTCATTTGTTTTGCCCTTTTTTTTGACTTTGACGTGGGGTTTTTAGAAGGTTCAAAATTTCCGTTTTTAATCTTAAATTCTTGTGGTGGTTAAACCCCTTTGGGTGTAAAATTG</gDNA_template>
            <first_frame> R  G  R  K  S  F  I  P  L  Y  L  P  *  G  R  T  D  P  F  W  Y  P  W  T  F  R  L  L  N  C  P  T  P  V  F  N  L  T  H  H  N  N  G  R  T  N  L  S  V  L  L  V  F  L  K  K  L  G  V  I  L  V  V  F  R  Y  R  R  I  W  M  K  K  P  L  K  G  F  I  L  Q  Q  L  S  F  *  S  T  L  W  L  W  L  L  *  F  P  E  K  L  H  C  L  L  Q  V  L  L  L  V  P  L  Q  N  L  L  L  H  L  L  T  V  S  S  S  S  C  R  F  F  Y  E  T  P  L  C  N  C  T  F  I  F  I  C  F  A  L  F  F  D  F  D  V  G  F  L  E  G  S  K  F  P  F  L  I  L  N  S  C  G  G  *  T  P  L  G  V  K  L </first_frame>
            <second_frame>  E  E  E  K  A  S  F  L  C  I  Y  H  E  E  E  P  T  R  F  G  I  H  G  H  S  G  S  *  I  V  Q  H  Q  Y  S  I  L  P  I  T  T  M  E  E  Q  I  C  R  F  C  *  F  F  *  R  N  W  V  *  F  W  L  Y  F  V  I  G  E  F  G  *  K  S  L  *  R  V  S  S  Y  N  N  S  A  F  K  A  P  F  G  Y  G  C  F  D  S  Q  R  S  C  I  V  C  C  R  C  Y  C  W  C  R  C  K  I  C  Y  C  T  S  *  P  Y  Q  A  P  H  A  G  S  F  M  K  P  L  Y  V  I  V  H  S  F  S  F  V  L  P  F  F  L  T  L  T  W  G  F  *  K  V  Q  N  F  R  F  *  S  *  I  L  V  V  V  K  P  L  W  V  *  N   </second_frame>
            <third_frame>   R  K  K  K  L  H  S  S  V  S  T  M  R  K  N  R  P  V  L  V  S  M  D  I  P  A  L  E  L  S  N  T  S  I  Q  S  Y  P  S  Q  Q  W  K  N  K  F  V  G  S  A  S  F  S  K  E  I  G  C  N  F  G  C  I  S  L  S  E  N  L  D  E  K  A  F  K  G  F  H  P  T  T  T  Q  L  L  K  H  P  L  A  M  V  A  L  I  P  R  E  A  A  L  F  A  A  G  A  I  A  G  A  A  A  K  S  V  T  A  P  L  D  R  I  K  L  L  M  Q  V  L  L  *  N  P  F  M  *  L  Y  I  H  F  H  L  F  C  P  F  F  *  L  *  R  G  V  F  R  R  F  K  I  S  V  F  N  L  K  F  L  W  W  L  N  P  F  G  C  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48782" stop="48390"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKKLHSSVSTMRKNRPVLVSMDIPALELSNTSIQSYPSQQWKNKFVGSASFSKEIGCNFGCISLSENLDEKAFKGFHPTTTQLLKHPLAMVALIPREAALFAAGAIAGAAAKSVTAPLDRIKLLMQVLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="48793" e_stop="48450"/>
            <exon e_start="46801" e_stop="46775"/>
            <exon e_start="46044" e_stop="45982"/>
            <exon e_start="45885" e_stop="45829"/>
            <exon e_start="45744" e_stop="45662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.955" acc_prob="0.000" e_score="0.977"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="48793" e_stop="48450" e_length="344"/>
          </exon>
          <intron i_serial="1" don_prob="0.955" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48449" i_stop="46802" i_length="1648"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46801" e_stop="46775" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46774" i_stop="46045" i_length="730"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46044" e_stop="45982" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.966">
            <gDNA_intron_boundary i_start="45981" i_stop="45886" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45885" e_stop="45829" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.823" acc_prob="0.995">
            <gDNA_intron_boundary i_start="45828" i_stop="45745" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="45744" e_stop="45662" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48793" stop="48450"/>
              <exon start="46801" stop="46775"/>
              <exon start="46044" stop="45982"/>
              <exon start="45885" stop="45829"/>
              <exon start="45744" stop="45662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48783" stop="48493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48737" stop="48516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGACAACAGAGGAAGAAAAAGCTTCATTCCTCTGTATCTACCATGAGGAAGAACCGACCCGTTTTGGTATCCATGGACATTCCGGCTCTTGAATTGTCCAACACCAGTATTCAATCTTACCCATCACAACAATGGAAGAACAAATTTGTCGGTTCTGCTAGTTTTTCTAAAGAAATTGGGTGTAATTTTGGTTGTATTTCGTTATCGGAGAATTTGGATGAAAAAGCCTTTAAAGGGTTTCATCCTACAACAACTCAGCTTTTAAAGCACCCTTTGGCTATGGTTGCTTTGATTCCCAGAGAAGCTGCATTGTTTGCTGCAGGTGCTATTGCTGGTGCCGCT : GCAAAGAAAGGAATCGGATTCATTGAG : GCATTTGCATTGATTGGGAAGGAGGAAGGTATCAAAGGATATTGGAAAGGAAACCTTCCACAG : GTGATACGGATCATACCTTATAGTGCGGTGCAGTTATTTGCTTATGAAACGTACAAG : AAACTTTTTCAAGGAAAGGATGGGGAGCTTTCTGTCATTGGAAGACTAGCAGCAGGTGCTTGTGCTGGCATGACTTCTACTTT</gDNA_template>
            <first_frame> V  D  N  R  G  R  K  S  F  I  P  L  Y  L  P  *  G  R  T  D  P  F  W  Y  P  W  T  F  R  L  L  N  C  P  T  P  V  F  N  L  T  H  H  N  N  G  R  T  N  L  S  V  L  L  V  F  L  K  K  L  G  V  I  L  V  V  F  R  Y  R  R  I  W  M  K  K  P  L  K  G  F  I  L  Q  Q  L  S  F  *  S  T  L  W  L  W  L  L  *  F  P  E  K  L  H  C  L  L  Q  V  L  L  L  V  P  L :   Q  R  K  E  S  D  S  L  R :   H  L  H  *  L  G  R  R  K  V  S  K  D  I  G  K  E  T  F  H  R :   *  Y  G  S  Y  L  I  V  R  C  S  Y  L  L  M  K  R  T  R :   N  F  F  K  E  R  M  G  S  F  L  S  L  E  D  *  Q  Q  V  L  V  L  A  *  L  L  L  </first_frame>
            <second_frame>  L  T  T  E  E  E  K  A  S  F  L  C  I  Y  H  E  E  E  P  T  R  F  G  I  H  G  H  S  G  S  *  I  V  Q  H  Q  Y  S  I  L  P  I  T  T  M  E  E  Q  I  C  R  F  C  *  F  F  *  R  N  W  V  *  F  W  L  Y  F  V  I  G  E  F  G  *  K  S  L  *  R  V  S  S  Y  N  N  S  A  F  K  A  P  F  G  Y  G  C  F  D  S  Q  R  S  C  I  V  C  C  R  C  Y  C  W  C  R   : C  K  E  R  N  R  I  H  *   : G  I  C  I  D  W  E  G  G  R  Y  Q  R  I  L  E  R  K  P  S  T   : G  D  T  D  H  T  L  *  C  G  A  V  I  C  L  *  N  V  Q   : E  T  F  S  R  K  G  W  G  A  F  C  H  W  K  T  S  S  R  C  L  C  W  H  D  F  Y  F </second_frame>
            <third_frame>   *  Q  Q  R  K  K  K  L  H  S  S  V  S  T  M  R  K  N  R  P  V  L  V  S  M  D  I  P  A  L  E  L  S  N  T  S  I  Q  S  Y  P  S  Q  Q  W  K  N  K  F  V  G  S  A  S  F  S  K  E  I  G  C  N  F  G  C  I  S  L  S  E  N  L  D  E  K  A  F  K  G  F  H  P  T  T  T  Q  L  L  K  H  P  L  A  M  V  A  L  I  P  R  E  A  A  L  F  A  A  G  A  I  A  G  A  A  :  A  K  K  G  I  G  F  I  E  :  A  F  A  L  I  G  K  E  E  G  I  K  G  Y  W  K  G  N  L  P  Q  :  V  I  R  I  I  P  Y  S  A  V  Q  L  F  A  Y  E  T  Y  K  :  K  L  F  Q  G  K  D  G  E  L  S  V  I  G  R  L  A  A  G  A  C  A  G  M  T  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48788" stop="48450"/>
                    <exon start="46801" stop="46775"/>
                    <exon start="46044" stop="45982"/>
                    <exon start="45885" stop="45829"/>
                    <exon start="45744" stop="45664"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQRKKKLHSSVSTMRKNRPVLVSMDIPALELSNTSIQSYPSQQWKNKFVGSASFSKEIGCNFGCISLSENLDEKAFKGFHPTTTQLLKHPLAMVALIPREAALFAAGAIAGAAAKKGIGFIEAFALIGKEEGIKGYWKGNLPQVIRIIPYSAVQLFAYETYKKLFQGKDGELSVIGRLAAGACAGMTST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="45401" e_stop="45395"/>
            <exon e_start="45335" e_stop="45267"/>
            <exon e_start="45197" e_stop="45085"/>
            <exon e_start="44988" e_stop="44819"/>
            <exon e_start="43431" e_stop="43353"/>
            <exon e_start="43128" e_stop="42942"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.341" acc_prob="0.997" e_score="0.571"/>
          <exon-intron don_prob="0.820" acc_prob="0.996" e_score="0.913"/>
          <exon-intron don_prob="0.000" acc_prob="0.890" e_score="0.982"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.846" acc_prob="0.984" e_score="0.962"/>
          <exon-only e_score="0.840"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="45401" e_stop="45395" e_length="7"/>
          </exon>
          <intron i_serial="1" don_prob="0.341" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45394" i_stop="45336" i_length="59"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="45335" e_stop="45267" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.820" acc_prob="0.996">
            <gDNA_intron_boundary i_start="45266" i_stop="45198" i_length="69"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="45197" e_stop="45085" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.890">
            <gDNA_intron_boundary i_start="45084" i_stop="44989" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="44988" e_stop="44819" e_length="170"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44818" i_stop="43432" i_length="1387"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="43431" e_stop="43353" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.846" acc_prob="0.984">
            <gDNA_intron_boundary i_start="43352" i_stop="43129" i_length="224"/>
          </intron>
          <exon e_serial="6" e_score="0.840">
            <gDNA_exon_boundary e_start="43128" e_stop="42942" e_length="187"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45401" stop="45395"/>
              <exon start="45335" stop="45267"/>
              <exon start="45197" stop="45085"/>
              <exon start="44988" stop="44819"/>
              <exon start="43431" stop="43353"/>
              <exon start="43128" stop="42942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGTT : GTAACCTACCCACTCGATGTTCTCAGGTTGAGATTAGCAGTAGACCCTGGATATAAAACAATGAGTGAG : GTTGCTTTAAACATGCTGAAAGAGGAAGGCTTTGCATCCTTTTATAATGGTCTCGGGCCCTCGCTCATTGGAATAGCTCCATATATTGCTGTGAACTTTTGTGTTTTTGACTT : GGTGAAAAAAGCTTTGCCAGAAGAGTATCAGAAACGAACTGAAGCCACTCTGGCTACAGGTTTGATTTCAGCAACTATTGCCACTCTATTGTGCTATCCATTGGACACAGTGAGAAGGCAAATGCAAATGAAGGGTACACCTTATATGACAATTTTTGATGCCTTCCCAG : GTATAGTGGCCCGTGATGGTATAGTTGGACTCTACAGGGGTTTTGTTCCCAATGCACTGAAAACTCTCCCTAATAGCAG : CATTAGGCTTACTACTTTTGACACCGTGAAGCGTTTGCTAGCAAGAAGTGAGGAAGAGTTCCAGAAAATTATAGAGGAAAACCGCAGGCAAAAGGCAGAATAATTCCCAAGTAGATCTGATTCCATGGAGATAATTGATCTCGTCATTTTGAAGCATTGGTTCGACGAGCAAGAAACTTAGCTTCCA</gDNA_template>
            <first_frame> L  C   : C  N  L  P  T  R  C  S  Q  V  E  I  S  S  R  P  W  I  *  N  N  E  *   : G  C  F  K  H  A  E  R  G  R  L  C  I  L  L  *  W  S  R  A  L  A  H  W  N  S  S  I  Y  C  C  E  L  L  C  F  *  L  :  G  E  K  S  F  A  R  R  V  S  E  T  N  *  S  H  S  G  Y  R  F  D  F  S  N  Y  C  H  S  I  V  L  S  I  G  H  S  E  K  A  N  A  N  E  G  Y  T  L  Y  D  N  F  *  C  L  P  R :   Y  S  G  P  *  W  Y  S  W  T  L  Q  G  F  C  S  Q  C  T  E  N  S  P  *  *  Q  :  H  *  A  Y  Y  F  *  H  R  E  A  F  A  S  K  K  *  G  R  V  P  E  N  Y  R  G  K  P  Q  A  K  G  R  I  I  P  K  *  I  *  F  H  G  D  N  *  S  R  H  F  E  A  L  V  R  R  A  R  N  L  A  S  </first_frame>
            <second_frame>  C  V  :  V  T  Y  P  L  D  V  L  R  L  R  L  A  V  D  P  G  Y  K  T  M  S  E  :  V  A  L  N  M  L  K  E  E  G  F  A  S  F  Y  N  G  L  G  P  S  L  I  G  I  A  P  Y  I  A  V  N  F  C  V  F  D  L :   V  K  K  A  L  P  E  E  Y  Q  K  R  T  E  A  T  L  A  T  G  L  I  S  A  T  I  A  T  L  L  C  Y  P  L  D  T  V  R  R  Q  M  Q  M  K  G  T  P  Y  M  T  I  F  D  A  F  P   : G  I  V  A  R  D  G  I  V  G  L  Y  R  G  F  V  P  N  A  L  K  T  L  P  N  S  S :   I  R  L  T  T  F  D  T  V  K  R  L  L  A  R  S  E  E  E  F  Q  K  I  I  E  E  N  R  R  Q  K  A  E  *  F  P  S  R  S  D  S  M  E  I  I  D  L  V  I  L  K  H  W  F  D  E  Q  E  T  *  L  P </second_frame>
            <third_frame>   V  L :   *  P  T  H  S  M  F  S  G  *  D  *  Q  *  T  L  D  I  K  Q  *  V  R :   L  L  *  T  C  *  K  R  K  A  L  H  P  F  I  M  V  S  G  P  R  S  L  E  *  L  H  I  L  L  *  T  F  V  F  L  T   : W  *  K  K  L  C  Q  K  S  I  R  N  E  L  K  P  L  W  L  Q  V  *  F  Q  Q  L  L  P  L  Y  C  A  I  H  W  T  Q  *  E  G  K  C  K  *  R  V  H  L  I  *  Q  F  L  M  P  S  Q  :  V  *  W  P  V  M  V  *  L  D  S  T  G  V  L  F  P  M  H  *  K  L  S  L  I  A   : A  L  G  L  L  L  L  T  P  *  S  V  C  *  Q  E  V  R  K  S  S  R  K  L  *  R  K  T  A  G  K  R  Q  N  N  S  Q  V  D  L  I  P  W  R  *  L  I  S  S  F  *  S  I  G  S  T  S  K  K  L  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45400" stop="45395"/>
                    <exon start="45335" stop="45267"/>
                    <exon start="45197" stop="45085"/>
                    <exon start="44988" stop="44819"/>
                    <exon start="43431" stop="43353"/>
                    <exon start="43128" stop="43026"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVVTYPLDVLRLRLAVDPGYKTMSEVALNMLKEEGFASFYNGLGPSLIGIAPYIAVNFCVFDLVKKALPEEYQKRTEATLATGLISATIATLLCYPLDTVRRQMQMKGTPYMTIFDAFPGIVARDGIVGLYRGFVPNALKTLPNSSIRLTTFDTVKRLLARSEEEFQKIIEENRRQKAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="53261" PGL_stop="51291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53261" e_stop="52889"/>
            <exon e_start="52409" e_stop="52342"/>
            <exon e_start="52221" e_stop="52193"/>
            <exon e_start="51793" e_stop="51597"/>
            <exon e_start="51505" e_stop="51291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.795" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53261" e_stop="52889" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.938">
            <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52409" e_stop="52342" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.765">
            <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52221" e_stop="52193" e_length="29"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51793" e_stop="51597" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.795">
            <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="51505" e_stop="51291" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53261" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53240" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53239" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53235" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53235" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53235" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53235" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53235" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53234" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53230" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53230" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53228" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53227" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53223" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53223" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53223" stop="52889"/>
              <exon start="52409" stop="52368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53213" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53213" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53188" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53188" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53188" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53188" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53178" stop="52889"/>
              <exon start="52409" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53157" stop="52889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52375" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52350" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATACTCATACAAGATGAGAGTTATCTCAATATAAAACCAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA : TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA : GCAAATAGCTTTTTTTACTGGTCCAACAG : TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG : AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATCAAGAGTTAGCTGCATTGTTATGCTTCTTGCTAAGTTTGGTTATCTTGTGTTCCAATTGTGGACTCACCGACAACTTTTTCGACGCAC</gDNA_template>
            <first_frame> H  T  H  T  R  *  E  L  S  Q  Y  K  T  K  I  S  Y  F  P  K  K  K  T  K  Q  K  N  G  F  I  I  T  S  S  R  N  M  A  L  R  K  W  K  Y  *  A  F  K  Q  R  D  E  T  W  A  W  S  *  P  W  T  N  G  S  Q  R  I  V  F  V  S  *  E  K  V  *  S  N  P  C  K  E  S  T  L  C  H  C  *  R  C  S  C  *  Y  S  R  G  H  F  G  N  *  A  F  C  A  L  H  C  H  T  Y  C  H  Y  C  S  L  Q  K  L  W  K   : I  M  G  F  W  I  E  F  T  W  T  Y  S  I  G  *  T  C  Q  L  F  D  R  :  A  N  S  F  F  Y  W  S  N  S :   W  R  A  S  K  C  N  M  W  K  C  H  *  T  Y  N  S  N  I  C  F  N  R  T  *  S  G  C  C  K  I  F  T  L  G  I  Y  S  F  E  S  S  F  G  S  W  H  F  T  L  L  W  W  Y  C  K  Y  I  K  G  T  K  I  *  *   : E  T  S  R  C  E  L  S  T  F  I  I  G  I  I  M  S  R  V  A  F  D  V  S  L  C  W  S  W  R  I  S  S  N  N  S  T  S  N  I  E  S  I  K  S  *  L  H  C  Y  A  S  C  *  V  W  L  S  C  V  P  I  V  D  S  P  T  T  F  S  T  H </first_frame>
            <second_frame>  I  L  I  Q  D  E  S  Y  L  N  I  K  P  K  *  V  I  F  Q  R  K  R  Q  N  K  R  M  A  S  S  S  P  A  A  E  T  W  L  L  E  N  G  N  I  K  P  L  S  K  E  M  R  H  G  H  G  R  S  H  G  R  T  A  H  N  V  S  S  S  S  L  R  K  K  S  D  L  T  L  V  R  K  V  P  C  A  I  V  R  D  V  L  A  N  I  Q  E  V  I  L  G  T  K  L  F  V  L  F  I  A  I  P  I  A  I  I  A  H  Y  K  N  F  G  R  :  S  W  V  F  G  L  S  L  L  G  L  T  P  L  A  E  R  V  S  F  L  T  E :   Q  I  A  F  F  T  G  P  T   : V  G  G  L  L  N  A  T  C  G  N  A  T  E  L  I  I  A  I  F  A  L  I  E  H  K  V  D  V  V  K  Y  S  L  L  G  S  I  L  S  N  L  L  L  V  L  G  T  S  L  F  C  G  G  I  A  N  I  S  K  E  Q  K  Y  D  R  :  K  Q  A  D  V  N  S  L  L  L  L  L  G  L  L  C  H  V  L  P  L  M  F  R  Y  A  G  V  G  E  S  A  A  I  T  A  Q  A  T  L  N  L  S  R  V  S  C  I  V  M  L  L  A  K  F  G  Y  L  V  F  Q  L  W  T  H  R  Q  L  F  R  R   </second_frame>
            <third_frame>   Y  S  Y  K  M  R  V  I  S  I  *  N  Q  N  K  L  F  S  K  E  K  D  K  T  K  E  W  L  H  H  H  Q  Q  Q  K  H  G  S  *  K  M  E  I  L  S  L  *  A  K  R  *  D  M  G  M  V  V  A  M  D  E  R  L  T  T  Y  R  L  R  L  L  G  K  S  L  I  *  P  L  *  G  K  Y  L  V  P  L  L  E  M  F  L  L  I  F  K  R  S  F  W  E  L  S  F  L  C  S  S  L  P  Y  L  L  P  L  L  L  I  T  K  T  L  E  D :   H  G  F  L  D  *  V  Y  L  D  L  L  H  W  L  N  V  S  A  F  *  Q   : S  K  *  L  F  L  L  V  Q  Q  :  L  E  G  F  *  M  Q  H  V  E  M  P  L  N  L  *  *  Q  Y  L  L  *  S  N  I  K  W  M  L  *  N  I  H  S  W  D  L  F  F  R  I  F  F  W  F  L  A  L  H  S  F  V  V  V  L  Q  I  Y  Q  R  N  K  N  M  I  G :   N  K  Q  M  *  T  L  Y  F  Y  Y  W  D  Y  Y  V  T  C  C  L  *  C  F  V  M  L  E  L  E  N  Q  Q  Q  *  Q  H  K  Q  H  *  I  Y  Q  E  L  A  A  L  L  C  F  L  L  S  L  V  I  L  C  S  N  C  G  L  T  D  N  F  F  D  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53215" stop="52889"/>
                    <exon start="52409" stop="52342"/>
                    <exon start="52221" stop="52193"/>
                    <exon start="51793" stop="51597"/>
                    <exon start="51505" stop="51293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIFQRKRQNKRMASSSPAAETWLLENGNIKPLSKEMRHGHGRSHGRTAHNVSSSSLRKKSDLTLVRKVPCAIVRDVLANIQEVILGTKLFVLFIAIPIAIIAHYKNFGRSWVFGLSLLGLTPLAERVSFLTEQIAFFTGPTVGGLLNATCGNATELIIAIFALIEHKVDVVKYSLLGSILSNLLLVLGTSLFCGGIANISKEQKYDRKQADVNSLLLLLGLLCHVLPLMFRYAGVGESAAITAQATLNLSRVSCIVMLLAKFGYLVFQLWTHRQLFRR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53223" e_stop="52889"/>
            <exon e_start="52409" e_stop="52193"/>
            <exon e_start="51793" e_stop="51665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.938" e_score="0.955"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="0.922"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="53223" e_stop="52889" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.938">
            <gDNA_intron_boundary i_start="52888" i_stop="52410" i_length="479"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="52409" e_stop="52193" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="0.946">
            <gDNA_exon_boundary e_start="51793" e_stop="51665" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53223" stop="52889"/>
              <exon start="52409" stop="52193"/>
              <exon start="51793" stop="51665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53223" stop="52889"/>
              <exon start="52409" stop="52193"/>
              <exon start="51793" stop="51726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53223" stop="52889"/>
              <exon start="52409" stop="52368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53157" stop="52889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATAAGTTATTTTCCAAAGAAAAAGACAAAACAAAAGAATGGCTTCATCATCACCAGCAGCAGAAACATGGCTCTTAGAAAATGGAAATATTAAGCCTTTAAGCAAAGAGATGAGACATGGGCATGGTCGTAGCCATGGACGAACGGCTCACAACGTATCGTCTTCGTCTCTTAGGAAAAAGTCTGATCTAACCCTTGTAAGGAAAGTACCTTGTGCCATTGTTAGAGATGTTCTTGCTAATATTCAAGAGGTCATTTTGGGAACTAAGCTTTTTGTGCTCTTCATTGCCATACCTATTGCCATTATTGCTCATTACAAAAACTTTGGAAGA : TCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGAGTAAGTTAAATTGTTTCTTTGTATGGTATAATTTGATTATTAAAATTATTTATGAGTCGATTTGAATTGATTATTACTAAATCACCTATTATTAACATTTTTGATTGATTTGAATTGTAGGCAAATAGCTTTTTTTACTGGTCCAACAG : TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTT</gDNA_template>
            <first_frame> Q  N  K  L  F  S  K  E  K  D  K  T  K  E  W  L  H  H  H  Q  Q  Q  K  H  G  S  *  K  M  E  I  L  S  L  *  A  K  R  *  D  M  G  M  V  V  A  M  D  E  R  L  T  T  Y  R  L  R  L  L  G  K  S  L  I  *  P  L  *  G  K  Y  L  V  P  L  L  E  M  F  L  L  I  F  K  R  S  F  W  E  L  S  F  L  C  S  S  L  P  Y  L  L  P  L  L  L  I  T  K  T  L  E  D :   H  G  F  L  D  *  V  Y  L  D  L  L  H  W  L  N  V  S  A  F  *  Q  S  K  L  N  C  F  F  V  W  Y  N  L  I  I  K  I  I  Y  E  S  I  *  I  D  Y  Y  *  I  T  Y  Y  *  H  F  *  L  I  *  I  V  G  K  *  L  F  L  L  V  Q  Q  :  L  E  G  F  *  M  Q  H  V  E  M  P  L  N  L  *  *  Q  Y  L  L  *  S  N  I  K  W  M  L  *  N  I  H  S  W  D  L  F  F  R  I  F  F </first_frame>
            <second_frame>  K  I  S  Y  F  P  K  K  K  T  K  Q  K  N  G  F  I  I  T  S  S  R  N  M  A  L  R  K  W  K  Y  *  A  F  K  Q  R  D  E  T  W  A  W  S  *  P  W  T  N  G  S  Q  R  I  V  F  V  S  *  E  K  V  *  S  N  P  C  K  E  S  T  L  C  H  C  *  R  C  S  C  *  Y  S  R  G  H  F  G  N  *  A  F  C  A  L  H  C  H  T  Y  C  H  Y  C  S  L  Q  K  L  W  K   : I  M  G  F  W  I  E  F  T  W  T  Y  S  I  G  *  T  C  Q  L  F  D  R  V  S  *  I  V  S  L  Y  G  I  I  *  L  L  K  L  F  M  S  R  F  E  L  I  I  T  K  S  P  I  I  N  I  F  D  *  F  E  L  *  A  N  S  F  F  Y  W  S  N  S :   W  R  A  S  K  C  N  M  W  K  C  H  *  T  Y  N  S  N  I  C  F  N  R  T  *  S  G  C  C  K  I  F  T  L  G  I  Y  S  F  E  S  S   </second_frame>
            <third_frame>   K  *  V  I  F  Q  R  K  R  Q  N  K  R  M  A  S  S  S  P  A  A  E  T  W  L  L  E  N  G  N  I  K  P  L  S  K  E  M  R  H  G  H  G  R  S  H  G  R  T  A  H  N  V  S  S  S  S  L  R  K  K  S  D  L  T  L  V  R  K  V  P  C  A  I  V  R  D  V  L  A  N  I  Q  E  V  I  L  G  T  K  L  F  V  L  F  I  A  I  P  I  A  I  I  A  H  Y  K  N  F  G  R  :  S  W  V  F  G  L  S  L  L  G  L  T  P  L  A  E  R  V  S  F  L  T  E  *  V  K  L  F  L  C  M  V  *  F  D  Y  *  N  Y  L  *  V  D  L  N  *  L  L  L  N  H  L  L  L  T  F  L  I  D  L  N  C  R  Q  I  A  F  F  T  G  P  T   : V  G  G  L  L  N  A  T  C  G  N  A  T  E  L  I  I  A  I  F  A  L  I  E  H  K  V  D  V  V  K  Y  S  L  L  G  S  I  L  S  N  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53215" stop="52889"/>
                    <exon start="52409" stop="52338"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIFQRKRQNKRMASSSPAAETWLLENGNIKPLSKEMRHGHGRSHGRTAHNVSSSSLRKKSDLTLVRKVPCAIVRDVLANIQEVILGTKLFVLFIAIPIAIIAHYKNFGRSWVFGLSLLGLTPLAERVSFLTE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52271" stop="52193"/>
                    <exon start="51793" stop="51666"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLNHLLLTFLIDLNCRQIAFFTGPTVGGLLNATCGNATELIIAIFALIEHKVDVVKYSLLGSILSNLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52731" e_stop="52342"/>
            <exon e_start="52221" e_stop="52193"/>
            <exon e_start="51793" e_stop="51597"/>
            <exon e_start="51505" e_stop="51291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.765" e_score="0.997"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.795" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="52731" e_stop="52342" e_length="390"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.765">
            <gDNA_intron_boundary i_start="52341" i_stop="52222" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52221" e_stop="52193" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52192" i_stop="51794" i_length="399"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51793" e_stop="51597" e_length="197"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.795">
            <gDNA_intron_boundary i_start="51596" i_stop="51506" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="51505" e_stop="51291" e_length="215"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52731" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52375" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52350" stop="52342"/>
              <exon start="52221" stop="52193"/>
              <exon start="51793" stop="51597"/>
              <exon start="51505" stop="51291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286796" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAATAGTGGAGCAAAAAATATTATACAAAAAAAATTAAAGGGATTCAACTCAACGTTTACTTTCTATGCATATAAATTAATTTTAATCTTCTATTATATACTACGTGATGGAAATTTGAATGAATCCCGCCATGCATTAATTGAATACATAATATAATTTAAAAGTGTTATTTTATTTAACAACACAATTTGTTTTCTTTTTCTTTTTTTTGAATAACTAAAAGATCCGTTGAAAGATGTGAATCTGAGAATATTTTTTTGTGATTTCTTGATTAATTTATTTTATAATACTGACATTTTATTTTTCTATATTATATCAGTCATGGGTTTTTGGATTGAGTTTACTTGGACTTACTCCATTGGCTGAACGTGTCAGCTTTTTGACAGA : GCAAATAGCTTTTTTTACTGGTCCAACAG : TTGGAGGGCTTCTAAATGCAACATGTGGAAATGCCACTGAACTTATAATAGCAATATTTGCTTTAATCGAACATAAAGTGGATGTTGTAAAATATTCACTCTTGGGATCTATTCTTTCGAATCTTCTTTTGGTTCTTGGCACTTCACTCTTTTGTGGTGGTATTGCAAATATATCAAAGGAACAAAAATATGATAGG : AAACAAGCAGATGTGAACTCTCTACTTTTATTATTGGGATTATTATGTCACGTGTTGCCTTTGATGTTTCGTTATGCTGGAGTTGGAGAATCAGCAGCAATAACAGCACAAGCAACATTGAATCTATCAAGAGTTAGCTGCATTGTTATGCTTCTTGCTAAGTTTGGTTATCTTGTGTTCCAATTGTGGACTCACCGACAACTTTTTCGACGCAC</gDNA_template>
            <first_frame> T  N  S  G  A  K  N  I  I  Q  K  K  L  K  G  F  N  S  T  F  T  F  Y  A  Y  K  L  I  L  I  F  Y  Y  I  L  R  D  G  N  L  N  E  S  R  H  A  L  I  E  Y  I  I  *  F  K  S  V  I  L  F  N  N  T  I  C  F  L  F  L  F  F  E  *  L  K  D  P  L  K  D  V  N  L  R  I  F  F  C  D  F  L  I  N  L  F  Y  N  T  D  I  L  F  F  Y  I  I  S  V  M  G  F  W  I  E  F  T  W  T  Y  S  I  G  *  T  C  Q  L  F  D  R  :  A  N  S  F  F  Y  W  S  N  S :   W  R  A  S  K  C  N  M  W  K  C  H  *  T  Y  N  S  N  I  C  F  N  R  T  *  S  G  C  C  K  I  F  T  L  G  I  Y  S  F  E  S  S  F  G  S  W  H  F  T  L  L  W  W  Y  C  K  Y  I  K  G  T  K  I  *  *   : E  T  S  R  C  E  L  S  T  F  I  I  G  I  I  M  S  R  V  A  F  D  V  S  L  C  W  S  W  R  I  S  S  N  N  S  T  S  N  I  E  S  I  K  S  *  L  H  C  Y  A  S  C  *  V  W  L  S  C  V  P  I  V  D  S  P  T  T  F  S  T  H </first_frame>
            <second_frame>  Q  I  V  E  Q  K  I  L  Y  K  K  N  *  R  D  S  T  Q  R  L  L  S  M  H  I  N  *  F  *  S  S  I  I  Y  Y  V  M  E  I  *  M  N  P  A  M  H  *  L  N  T  *  Y  N  L  K  V  L  F  Y  L  T  T  Q  F  V  F  F  F  F  F  L  N  N  *  K  I  R  *  K  M  *  I  *  E  Y  F  F  V  I  S  *  L  I  Y  F  I  I  L  T  F  Y  F  S  I  L  Y  Q  S  W  V  F  G  L  S  L  L  G  L  T  P  L  A  E  R  V  S  F  L  T  E :   Q  I  A  F  F  T  G  P  T   : V  G  G  L  L  N  A  T  C  G  N  A  T  E  L  I  I  A  I  F  A  L  I  E  H  K  V  D  V  V  K  Y  S  L  L  G  S  I  L  S  N  L  L  L  V  L  G  T  S  L  F  C  G  G  I  A  N  I  S  K  E  Q  K  Y  D  R  :  K  Q  A  D  V  N  S  L  L  L  L  L  G  L  L  C  H  V  L  P  L  M  F  R  Y  A  G  V  G  E  S  A  A  I  T  A  Q  A  T  L  N  L  S  R  V  S  C  I  V  M  L  L  A  K  F  G  Y  L  V  F  Q  L  W  T  H  R  Q  L  F  R  R   </second_frame>
            <third_frame>   K  *  W  S  K  K  Y  Y  T  K  K  I  K  G  I  Q  L  N  V  Y  F  L  C  I  *  I  N  F  N  L  L  L  Y  T  T  *  W  K  F  E  *  I  P  P  C  I  N  *  I  H  N  I  I  *  K  C  Y  F  I  *  Q  H  N  L  F  S  F  S  F  F  *  I  T  K  R  S  V  E  R  C  E  S  E  N  I  F  L  *  F  L  D  *  F  I  L  *  Y  *  H  F  I  F  L  Y  Y  I  S  H  G  F  L  D  *  V  Y  L  D  L  L  H  W  L  N  V  S  A  F  *  Q   : S  K  *  L  F  L  L  V  Q  Q  :  L  E  G  F  *  M  Q  H  V  E  M  P  L  N  L  *  *  Q  Y  L  L  *  S  N  I  K  W  M  L  *  N  I  H  S  W  D  L  F  F  R  I  F  F  W  F  L  A  L  H  S  F  V  V  V  L  Q  I  Y  Q  R  N  K  N  M  I  G :   N  K  Q  M  *  T  L  Y  F  Y  Y  W  D  Y  Y  V  T  C  C  L  *  C  F  V  M  L  E  L  E  N  Q  Q  Q  *  Q  H  K  Q  H  *  I  Y  Q  E  L  A  A  L  L  C  F  L  L  S  L  V  I  L  C  S  N  C  G  L  T  D  N  F  F  D  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52457" stop="52342"/>
                    <exon start="52221" stop="52193"/>
                    <exon start="51793" stop="51597"/>
                    <exon start="51505" stop="51293"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIYFIILTFYFSILYQSWVFGLSLLGLTPLAERVSFLTEQIAFFTGPTVGGLLNATCGNATELIIAIFALIEHKVDVVKYSLLGSILSNLLLVLGTSLFCGGIANISKEQKYDRKQADVNSLLLLLGLLCHVLPLMFRYAGVGESAAITAQATLNLSRVSCIVMLLAKFGYLVFQLWTHRQLFRR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="62981" PGL_stop="58503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62981" e_stop="62883"/>
            <exon e_start="61812" e_stop="61723"/>
            <exon e_start="61613" e_stop="61451"/>
            <exon e_start="61336" e_stop="60991"/>
            <exon e_start="60037" e_stop="59645"/>
            <exon e_start="58988" e_stop="58503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.155" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62981" e_stop="62883" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.680">
            <gDNA_intron_boundary i_start="62882" i_stop="61813" i_length="1070"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61812" e_stop="61723" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.155" acc_prob="0.975">
            <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61613" e_stop="61451" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61336" e_stop="60991" e_length="346"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.983">
            <gDNA_intron_boundary i_start="60990" i_stop="60038" i_length="953"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60037" e_stop="59645" e_length="393"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="59644" i_stop="58989" i_length="656"/>
          </intron>
          <exon e_serial="6" e_score="0.953">
            <gDNA_exon_boundary e_start="58988" e_stop="58503" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62981" stop="62883"/>
              <exon start="61812" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="61087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62981" stop="62883"/>
              <exon start="61812" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="61221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62960" stop="62883"/>
              <exon start="61812" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="61192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62942" stop="62883"/>
              <exon start="61812" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="61088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62936" stop="62883"/>
              <exon start="61812" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="60991"/>
              <exon start="60037" stop="59889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62936" stop="62883"/>
              <exon start="61812" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="60991"/>
              <exon start="60037" stop="60010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="60991"/>
              <exon start="60037" stop="59915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="60991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61604" stop="61451"/>
              <exon start="61336" stop="61146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220413" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61590" stop="61451"/>
              <exon start="61336" stop="61146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61573" stop="61451"/>
              <exon start="61336" stop="61055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61188" stop="60991"/>
              <exon start="60037" stop="59645"/>
              <exon start="58988" stop="58961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59717" stop="59645"/>
              <exon start="58988" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59714" stop="59645"/>
              <exon start="58988" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371193" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAACTGCCACCACCATCGCGCCTGAGACTCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCG : AAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA : TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC : GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT : GCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATGGGGCAAAAAAGGTCTAATTATGTGCCAATTGGCAGAAGGGGAGTCTTTGGTGGTGTTATTCTTAATATGCATTTACATTGGAAAAAACATGAAACAGTCAAAGTCATATGCAAACCTGGTCAAGTCCAAGAATATGCCGATGAAATTGCAAGACTGAGTGGCGGCATCCCAATTCAGATAATTGCAGATGATACAATAGTTTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAG : GCATTGGAAAAATCCAAATATGAGCAGTCGCTAGAGTCTGTGAGACGTTTCATTGCGATTGCTGAAAAGGAACTTGAACTCTACTACCGACATGTCGCTCTATATGGTGACCCAAGTAACCGAAGTGCTTACTCCATCCTTGATGATTCAAGAAGCACAAGAGGAAAACGAAATGCTGAGATAGGTGAGGAGAACTATTCAGCAAGCAAATCTAATATGTTGGATCTTGAATTGGAAATTGACGATAGTTGTTCTGATGACAACCAGTCTTTATAATTTGAATTTGAAAATACCTGAATAGGAGTTTTCAATTCCACCTTAGTTTGGAATTAACTACACCTATGTTTTTATCTGCGTAATATATGAAGTTGTTAATTAGCAAGTAGGGGTGTATATGACCGGGTTGATTCAGGTTTTTCAAATATCAAACCAAACCATTTATGTCGAATTTTTGAATTTATAAACCAAATCAAACTCATGTTTTTC</gDNA_template>
            <first_frame> T  T  A  T  T  I  A  P  E  T  P  S  I  T  T  I  T  P  V  S  F  L  F  L  S  P  S  I  T  T  I  T  P  :  K  W  I  K  F  A  E  T  G  A  G  *  D  G  Y  T  Y  Y  S  S  L  N  P  L  F  I  H  K  N  I  :  *  *  I  A  *  F  R  E  S  S  R  *  S  S  S  P  A  P  L  K  A  N  N  N  I  I  W  L  F  L  Y  L  E  V  F  E  D  F  C  Y  F  H  I  A  G  L  Y  P  L  P  L  P  R  T   : R  Q  F  L  E  T  E  K  A  F  C  T  C  Q  G  L  C  L  K  I  A  *  P  D  K  A  H  V  G  T  *  G  T  L  V  M  E  V  *  I  L  L  *  Q  K  M  G  N  P  S  L  R  H  M  K  W  K  H  Q  R  K  K  N  G  R  Q  R  R  G  *  S  C  K  G  R  E  R  R  R  R  E  M  L  Q  I  R  G  I  Q  E  G  L  V  *  R  G  R  R  R  S  R  S  L  T  L  L  K  K  E  L  S  R  R  *  K  M :   Q  K  S  K  K  R  C  *  L  R  D  *  S  D  M  R  L  P  K  F  K  V  L  R  L  S  H  T  S  S  L  A  K  N  D  S  I  *  K  R  W  G  K  K  G  L  I  M  C  Q  L  A  E  G  E  S  L  V  V  L  F  L  I  C  I  Y  I  G  K  N  M  K  Q  S  K  S  Y  A  N  L  V  K  S  K  N  M  P  M  K  L  Q  D  *  V  A  A  S  Q  F  R  *  L  Q  M  I  Q  *  F  F  T  E  E  G  I  M  C  N  P  K  L  C  L  L  L  I  H  C  Q  R  R  R :   H  W  K  N  P  N  M  S  S  R  *  S  L  *  D  V  S  L  R  L  L  K  R  N  L  N  S  T  T  D  M  S  L  Y  M  V  T  Q  V  T  E  V  L  T  P  S  L  M  I  Q  E  A  Q  E  E  N  E  M  L  R  *  V  R  R  T  I  Q  Q  A  N  L  I  C  W  I  L  N  W  K  L  T  I  V  V  L  M  T  T  S  L  Y  N  L  N  L  K  I  P  E  *  E  F  S  I  P  P  *  F  G  I  N  Y  T  Y  V  F  I  C  V  I  Y  E  V  V  N  *  Q  V  G  V  Y  M  T  G  L  I  Q  V  F  Q  I  S  N  Q  T  I  Y  V  E  F  L  N  L  *  T  K  S  N  S  C  F   </first_frame>
            <second_frame>  Q  L  P  P  P  S  R  L  R  L  H  R  S  P  P  *  L  R  *  V  F  S  F  S  L  H  Q  S  P  P  *  L  R :   N  G  L  S  L  L  K  L  V  P  D  K  M  D  T  H  I  I  H  H  S  T  H  Y  L  S  I  K  I  Y :   D  K  *  P  N  F  E  S  L  H  G  E  V  A  R  Q  P  R  *  R  Q  T  T  T  L  Y  G  Y  S  S  I  *  K  F  S  K  T  S  V  T  F  T  S  Q  A  S  I  L  F  L  Y  L  V  H  :  A  N  S  W  K  P  R  K  L  F  A  L  V  K  V  C  A  S  K  *  L  N  P  T  R  L  M  L  G  L  E  E  L  *  S  W  K  C  E  F  C  Y  N  K  R  W  E  T  Q  V  *  D  T  *  S  G  S  T  K  E  R  K  M  E  D  K  E  E  A  E  A  A  K  E  E  R  E  E  E  E  K  C  C  K  *  E  G  S  K  K  A  W  S  K  G  E  E  E  E  A  E  V  *  H  C  *  R  K  N  *  A  E  D  R  K   : C  K  S  Q  R  S  A  V  D  *  E  T  K  A  I  *  G  Y  Q  S  S  R  S  *  G  *  A  T  L  P  H  W  R  R  T  I  L  Y  K  K  D  G  A  K  K  V  *  L  C  A  N  W  Q  K  G  S  L  W  W  C  Y  S  *  Y  A  F  T  L  E  K  T  *  N  S  Q  S  H  M  Q  T  W  S  S  P  R  I  C  R  *  N  C  K  T  E  W  R  H  P  N  S  D  N  C  R  *  Y  N  S  F  L  Q  R  K  G  L  C  A  T  R  N  Y  V  S  Y  *  Y  T  V  K  E  E   : G  I  G  K  I  Q  I  *  A  V  A  R  V  C  E  T  F  H  C  D  C  *  K  G  T  *  T  L  L  P  T  C  R  S  I  W  *  P  K  *  P  K  C  L  L  H  P  *  *  F  K  K  H  K  R  K  T  K  C  *  D  R  *  G  E  L  F  S  K  Q  I  *  Y  V  G  S  *  I  G  N  *  R  *  L  F  *  *  Q  P  V  F  I  I  *  I  *  K  Y  L  N  R  S  F  Q  F  H  L  S  L  E  L  T  T  P  M  F  L  S  A  *  Y  M  K  L  L  I  S  K  *  G  C  I  *  P  G  *  F  R  F  F  K  Y  Q  T  K  P  F  M  S  N  F  *  I  Y  K  P  N  Q  T  H  V  F  </second_frame>
            <third_frame>   N  C  H  H  H  R  A  *  D  S  I  D  H  H  H  N  S  G  E  F  S  L  S  L  S  I  N  H  H  H  N  S   : E  M  D  *  V  C  *  N  W  C  R  I  R  W  I  H  I  L  F  I  T  Q  P  I  I  Y  P  *  K  Y   : M  I  N  S  L  I  S  R  V  F  T  V  K  *  L  A  S  P  V  E  G  K  Q  Q  H  Y  M  A  I  P  L  F  R  S  F  R  R  L  L  L  L  S  H  R  R  P  L  S  S  S  S  T  S  Y  T :   P  I  L  G  N  R  E  S  F  L  H  L  S  R  F  V  P  Q  N  S  L  T  R  Q  G  S  C  W  D  L  R  N  F  S  H  G  S  V  N  F  V  I  T  K  D  G  K  P  K  F  E  T  H  E  V  E  A  P  K  K  E  K  W  K  T  K  K  R  L  K  L  Q  R  K  R  E  K  K  K  R  N  A  A  N  K  R  D  P  R  R  L  G  L  K  G  K  K  K  K  Q  K  F  D  T  A  E  E  R  I  K  Q  K  I  E  N  :  A  K  V  K  E  A  L  L  I  E  R  L  K  R  Y  E  V  T  K  V  Q  G  P  E  V  K  P  H  F  L  T  G  E  E  R  F  Y  I  K  K  M  G  Q  K  R  S  N  Y  V  P  I  G  R  R  G  V  F  G  G  V  I  L  N  M  H  L  H  W  K  K  H  E  T  V  K  V  I  C  K  P  G  Q  V  Q  E  Y  A  D  E  I  A  R  L  S  G  G  I  P  I  Q  I  I  A  D  D  T  I  V  F  Y  R  G  R  D  Y  V  Q  P  E  I  M  S  P  I  D  T  L  S  K  K  K  :  A  L  E  K  S  K  Y  E  Q  S  L  E  S  V  R  R  F  I  A  I  A  E  K  E  L  E  L  Y  Y  R  H  V  A  L  Y  G  D  P  S  N  R  S  A  Y  S  I  L  D  D  S  R  S  T  R  G  K  R  N  A  E  I  G  E  E  N  Y  S  A  S  K  S  N  M  L  D  L  E  L  E  I  D  D  S  C  S  D  D  N  Q  S  L  *  F  E  F  E  N  T  *  I  G  V  F  N  S  T  L  V  W  N  *  L  H  L  C  F  Y  L  R  N  I  *  S  C  *  L  A  S  R  G  V  Y  D  R  V  D  S  G  F  S  N  I  K  P  N  H  L  C  R  I  F  E  F  I  N  Q  I  K  L  M  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61572" stop="61451"/>
                    <exon start="61336" stop="60991"/>
                    <exon start="60037" stop="59645"/>
                    <exon start="58988" stop="58713"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LASPVEGKQQHYMAIPLFRSFRRLLLLSHRRPLSSSSTSYTPILGNRESFLHLSRFVPQNSLTRQGSCWDLRNFSHGSVNFVITKDGKPKFETHEVEAPKKEKWKTKKRLKLQRKREKKKRNAANKRDPRRLGLKGKKKKQKFDTAEERIKQKIENAKVKEALLIERLKRYEVTKVQGPEVKPHFLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICKPGQVQEYADEIARLSGGIPIQIIADDTIVFYRGRDYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPSNRSAYSILDDSRSTRGKRNAEIGEENYSASKSNMLDLELEIDDSCSDDNQSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62002" e_stop="61723"/>
            <exon e_start="61613" e_stop="61451"/>
            <exon e_start="61336" e_stop="60991"/>
            <exon e_start="60037" e_stop="59645"/>
            <exon e_start="58988" e_stop="58503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.155" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62002" e_stop="61723" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.155" acc_prob="0.975">
            <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61613" e_stop="61451" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61336" e_stop="60991" e_length="346"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.983">
            <gDNA_intron_boundary i_start="60990" i_stop="60038" i_length="953"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60037" e_stop="59645" e_length="393"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="59644" i_stop="58989" i_length="656"/>
          </intron>
          <exon e_serial="5" e_score="0.953">
            <gDNA_exon_boundary e_start="58988" e_stop="58503" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62002" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="61123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62002" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="61137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62002" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="61249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="60991"/>
              <exon start="60037" stop="59915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="60991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61604" stop="61451"/>
              <exon start="61336" stop="61146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220413" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61590" stop="61451"/>
              <exon start="61336" stop="61146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61573" stop="61451"/>
              <exon start="61336" stop="61055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61188" stop="60991"/>
              <exon start="60037" stop="59645"/>
              <exon start="58988" stop="58961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59717" stop="59645"/>
              <exon start="58988" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59714" stop="59645"/>
              <exon start="58988" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371193" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAAAATTGTTCAGTGCATAGGTACTATTTTGCACCTACCCTCGAGCATAAGAAATTTTTTTTTATTTTCATTTTCTCAAGAACTGCAGATGCTAAATTTGGCCTGTTTGAACATCTTTTTAACAATCTTTCCTTAGGTTATACTTATTTCTCTTCAACGGATTAGTAGTTTTTTCTTCTATATGCTAGAAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA : TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC : GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT : GCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATGGGGCAAAAAAGGTCTAATTATGTGCCAATTGGCAGAAGGGGAGTCTTTGGTGGTGTTATTCTTAATATGCATTTACATTGGAAAAAACATGAAACAGTCAAAGTCATATGCAAACCTGGTCAAGTCCAAGAATATGCCGATGAAATTGCAAGACTGAGTGGCGGCATCCCAATTCAGATAATTGCAGATGATACAATAGTTTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAG : GCATTGGAAAAATCCAAATATGAGCAGTCGCTAGAGTCTGTGAGACGTTTCATTGCGATTGCTGAAAAGGAACTTGAACTCTACTACCGACATGTCGCTCTATATGGTGACCCAAGTAACCGAAGTGCTTACTCCATCCTTGATGATTCAAGAAGCACAAGAGGAAAACGAAATGCTGAGATAGGTGAGGAGAACTATTCAGCAAGCAAATCTAATATGTTGGATCTTGAATTGGAAATTGACGATAGTTGTTCTGATGACAACCAGTCTTTATAATTTGAATTTGAAAATACCTGAATAGGAGTTTTCAATTCCACCTTAGTTTGGAATTAACTACACCTATGTTTTTATCTGCGTAATATATGAAGTTGTTAATTAGCAAGTAGGGGTGTATATGACCGGGTTGATTCAGGTTTTTCAAATATCAAACCAAACCATTTATGTCGAATTTTTGAATTTATAAACCAAATCAAACTCATGTTTTTC</gDNA_template>
            <first_frame> T  K  I  V  Q  C  I  G  T  I  L  H  L  P  S  S  I  R  N  F  F  L  F  S  F  S  Q  E  L  Q  M  L  N  L  A  C  L  N  I  F  L  T  I  F  P  *  V  I  L  I  S  L  Q  R  I  S  S  F  F  F  Y  M  L  E  M  D  *  V  C  *  N  W  C  R  I  R  W  I  H  I  L  F  I  T  Q  P  I  I  Y  P  *  K  Y   : M  I  N  S  L  I  S  R  V  F  T  V  K  *  L  A  S  P  V  E  G  K  Q  Q  H  Y  M  A  I  P  L  F  R  S  F  R  R  L  L  L  L  S  H  R  R  P  L  S  S  S  S  T  S  Y  T :   P  I  L  G  N  R  E  S  F  L  H  L  S  R  F  V  P  Q  N  S  L  T  R  Q  G  S  C  W  D  L  R  N  F  S  H  G  S  V  N  F  V  I  T  K  D  G  K  P  K  F  E  T  H  E  V  E  A  P  K  K  E  K  W  K  T  K  K  R  L  K  L  Q  R  K  R  E  K  K  K  R  N  A  A  N  K  R  D  P  R  R  L  G  L  K  G  K  K  K  K  Q  K  F  D  T  A  E  E  R  I  K  Q  K  I  E  N  :  A  K  V  K  E  A  L  L  I  E  R  L  K  R  Y  E  V  T  K  V  Q  G  P  E  V  K  P  H  F  L  T  G  E  E  R  F  Y  I  K  K  M  G  Q  K  R  S  N  Y  V  P  I  G  R  R  G  V  F  G  G  V  I  L  N  M  H  L  H  W  K  K  H  E  T  V  K  V  I  C  K  P  G  Q  V  Q  E  Y  A  D  E  I  A  R  L  S  G  G  I  P  I  Q  I  I  A  D  D  T  I  V  F  Y  R  G  R  D  Y  V  Q  P  E  I  M  S  P  I  D  T  L  S  K  K  K  :  A  L  E  K  S  K  Y  E  Q  S  L  E  S  V  R  R  F  I  A  I  A  E  K  E  L  E  L  Y  Y  R  H  V  A  L  Y  G  D  P  S  N  R  S  A  Y  S  I  L  D  D  S  R  S  T  R  G  K  R  N  A  E  I  G  E  E  N  Y  S  A  S  K  S  N  M  L  D  L  E  L  E  I  D  D  S  C  S  D  D  N  Q  S  L  *  F  E  F  E  N  T  *  I  G  V  F  N  S  T  L  V  W  N  *  L  H  L  C  F  Y  L  R  N  I  *  S  C  *  L  A  S  R  G  V  Y  D  R  V  D  S  G  F  S  N  I  K  P  N  H  L  C  R  I  F  E  F  I  N  Q  I  K  L  M  F  F </first_frame>
            <second_frame>  P  K  L  F  S  A  *  V  L  F  C  T  Y  P  R  A  *  E  I  F  F  Y  F  H  F  L  K  N  C  R  C  *  I  W  P  V  *  T  S  F  *  Q  S  F  L  R  L  Y  L  F  L  F  N  G  L  V  V  F  S  S  I  C  *  K  W  I  K  F  A  E  T  G  A  G  *  D  G  Y  T  Y  Y  S  S  L  N  P  L  F  I  H  K  N  I  :  *  *  I  A  *  F  R  E  S  S  R  *  S  S  S  P  A  P  L  K  A  N  N  N  I  I  W  L  F  L  Y  L  E  V  F  E  D  F  C  Y  F  H  I  A  G  L  Y  P  L  P  L  P  R  T   : R  Q  F  L  E  T  E  K  A  F  C  T  C  Q  G  L  C  L  K  I  A  *  P  D  K  A  H  V  G  T  *  G  T  L  V  M  E  V  *  I  L  L  *  Q  K  M  G  N  P  S  L  R  H  M  K  W  K  H  Q  R  K  K  N  G  R  Q  R  R  G  *  S  C  K  G  R  E  R  R  R  R  E  M  L  Q  I  R  G  I  Q  E  G  L  V  *  R  G  R  R  R  S  R  S  L  T  L  L  K  K  E  L  S  R  R  *  K  M :   Q  K  S  K  K  R  C  *  L  R  D  *  S  D  M  R  L  P  K  F  K  V  L  R  L  S  H  T  S  S  L  A  K  N  D  S  I  *  K  R  W  G  K  K  G  L  I  M  C  Q  L  A  E  G  E  S  L  V  V  L  F  L  I  C  I  Y  I  G  K  N  M  K  Q  S  K  S  Y  A  N  L  V  K  S  K  N  M  P  M  K  L  Q  D  *  V  A  A  S  Q  F  R  *  L  Q  M  I  Q  *  F  F  T  E  E  G  I  M  C  N  P  K  L  C  L  L  L  I  H  C  Q  R  R  R :   H  W  K  N  P  N  M  S  S  R  *  S  L  *  D  V  S  L  R  L  L  K  R  N  L  N  S  T  T  D  M  S  L  Y  M  V  T  Q  V  T  E  V  L  T  P  S  L  M  I  Q  E  A  Q  E  E  N  E  M  L  R  *  V  R  R  T  I  Q  Q  A  N  L  I  C  W  I  L  N  W  K  L  T  I  V  V  L  M  T  T  S  L  Y  N  L  N  L  K  I  P  E  *  E  F  S  I  P  P  *  F  G  I  N  Y  T  Y  V  F  I  C  V  I  Y  E  V  V  N  *  Q  V  G  V  Y  M  T  G  L  I  Q  V  F  Q  I  S  N  Q  T  I  Y  V  E  F  L  N  L  *  T  K  S  N  S  C  F   </second_frame>
            <third_frame>   Q  N  C  S  V  H  R  Y  Y  F  A  P  T  L  E  H  K  K  F  F  F  I  F  I  F  S  R  T  A  D  A  K  F  G  L  F  E  H  L  F  N  N  L  S  L  G  Y  T  Y  F  S  S  T  D  *  *  F  F  L  L  Y  A  R  N  G  L  S  L  L  K  L  V  P  D  K  M  D  T  H  I  I  H  H  S  T  H  Y  L  S  I  K  I  Y :   D  K  *  P  N  F  E  S  L  H  G  E  V  A  R  Q  P  R  *  R  Q  T  T  T  L  Y  G  Y  S  S  I  *  K  F  S  K  T  S  V  T  F  T  S  Q  A  S  I  L  F  L  Y  L  V  H  :  A  N  S  W  K  P  R  K  L  F  A  L  V  K  V  C  A  S  K  *  L  N  P  T  R  L  M  L  G  L  E  E  L  *  S  W  K  C  E  F  C  Y  N  K  R  W  E  T  Q  V  *  D  T  *  S  G  S  T  K  E  R  K  M  E  D  K  E  E  A  E  A  A  K  E  E  R  E  E  E  E  K  C  C  K  *  E  G  S  K  K  A  W  S  K  G  E  E  E  E  A  E  V  *  H  C  *  R  K  N  *  A  E  D  R  K   : C  K  S  Q  R  S  A  V  D  *  E  T  K  A  I  *  G  Y  Q  S  S  R  S  *  G  *  A  T  L  P  H  W  R  R  T  I  L  Y  K  K  D  G  A  K  K  V  *  L  C  A  N  W  Q  K  G  S  L  W  W  C  Y  S  *  Y  A  F  T  L  E  K  T  *  N  S  Q  S  H  M  Q  T  W  S  S  P  R  I  C  R  *  N  C  K  T  E  W  R  H  P  N  S  D  N  C  R  *  Y  N  S  F  L  Q  R  K  G  L  C  A  T  R  N  Y  V  S  Y  *  Y  T  V  K  E  E   : G  I  G  K  I  Q  I  *  A  V  A  R  V  C  E  T  F  H  C  D  C  *  K  G  T  *  T  L  L  P  T  C  R  S  I  W  *  P  K  *  P  K  C  L  L  H  P  *  *  F  K  K  H  K  R  K  T  K  C  *  D  R  *  G  E  L  F  S  K  Q  I  *  Y  V  G  S  *  I  G  N  *  R  *  L  F  *  *  Q  P  V  F  I  I  *  I  *  K  Y  L  N  R  S  F  Q  F  H  L  S  L  E  L  T  T  P  M  F  L  S  A  *  Y  M  K  L  L  I  S  K  *  G  C  I  *  P  G  *  F  R  F  F  K  Y  Q  T  K  P  F  M  S  N  F  *  I  Y  K  P  N  Q  T  H  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61572" stop="61451"/>
                    <exon start="61336" stop="60991"/>
                    <exon start="60037" stop="59645"/>
                    <exon start="58988" stop="58713"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LASPVEGKQQHYMAIPLFRSFRRLLLLSHRRPLSSSSTSYTPILGNRESFLHLSRFVPQNSLTRQGSCWDLRNFSHGSVNFVITKDGKPKFETHEVEAPKKEKWKTKKRLKLQRKREKKKRNAANKRDPRRLGLKGKKKKQKFDTAEERIKQKIENAKVKEALLIERLKRYEVTKVQGPEVKPHFLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICKPGQVQEYADEIARLSGGIPIQIIADDTIVFYRGRDYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPSNRSAYSILDDSRSTRGKRNAEIGEENYSASKSNMLDLELEIDDSCSDDNQSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62960" e_stop="62928"/>
            <exon e_start="61812" e_stop="61723"/>
            <exon e_start="61613" e_stop="61451"/>
            <exon e_start="61336" e_stop="60991"/>
            <exon e_start="60037" e_stop="59645"/>
            <exon e_start="58988" e_stop="58503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="0.155" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62960" e_stop="62928" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.680">
            <gDNA_intron_boundary i_start="62927" i_stop="61813" i_length="1115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61812" e_stop="61723" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.155" acc_prob="0.975">
            <gDNA_intron_boundary i_start="61722" i_stop="61614" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61613" e_stop="61451" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="61450" i_stop="61337" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61336" e_stop="60991" e_length="346"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.983">
            <gDNA_intron_boundary i_start="60990" i_stop="60038" i_length="953"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60037" e_stop="59645" e_length="393"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="59644" i_stop="58989" i_length="656"/>
          </intron>
          <exon e_serial="6" e_score="0.953">
            <gDNA_exon_boundary e_start="58988" e_stop="58503" e_length="486"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62960" stop="62928"/>
              <exon start="61812" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="60991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62958" stop="62928"/>
              <exon start="61812" stop="61723"/>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="61215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="60991"/>
              <exon start="60037" stop="59915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61613" stop="61451"/>
              <exon start="61336" stop="60991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61604" stop="61451"/>
              <exon start="61336" stop="61146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220413" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61590" stop="61451"/>
              <exon start="61336" stop="61146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220222" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61573" stop="61451"/>
              <exon start="61336" stop="61055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61188" stop="60991"/>
              <exon start="60037" stop="59645"/>
              <exon start="58988" stop="58961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59717" stop="59645"/>
              <exon start="58988" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59714" stop="59645"/>
              <exon start="58988" stop="58503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371193" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGAGACTCCATCGATCACCACCATAACTCCG : AAATGGATTAAGTTTGCTGAAACTGGTGCCGGATAAGATGGATACACATATTATTCATCACTCAACCCATTATTTATCCATAAAAATATA : TGATAAATAGCCTAATTTCGAGAGTCTTCACGGTGAAGTAGCTCGCCAGCCCCGTTGAAGGCAAACAACAACATTATATGGCTATTCCTCTATTTAGAAGTTTTCGAAGACTTCTGTTACTTTCACATCGCAGGCCTCTATCCTCTTCCTCTACCTCGTACAC : GCCAATTCTTGGAAACCGAGAAAGCTTTTTGCACTTGTCAAGGTTTGTGCCTCAAAATAGCTTAACCCGACAAGGCTCATGTTGGGACTTGAGGAACTTTAGTCATGGAAGTGTGAATTTTGTTATAACAAAAGATGGGAAACCCAAGTTTGAGACACATGAAGTGGAAGCACCAAAGAAAGAAAAATGGAAGACAAAGAAGAGGCTGAAGCTGCAAAGGAAGAGAGAGAAGAAGAAGAGAAATGCTGCAAATAAGAGGGATCCAAGAAGGCTTGGTCTAAAGGGGAAGAAGAAGAAGCAGAAGTTTGACACTGCTGAAGAAAGAATTAAGCAGAAGATAGAAAAT : GCAAAAGTCAAAGAAGCGCTGTTGATTGAGAGACTAAAGCGATATGAGGTTACCAAAGTTCAAGGTCCTGAGGTTAAGCCACACTTCCTCACTGGCGAAGAACGATTCTATATAAAAAAGATGGGGCAAAAAAGGTCTAATTATGTGCCAATTGGCAGAAGGGGAGTCTTTGGTGGTGTTATTCTTAATATGCATTTACATTGGAAAAAACATGAAACAGTCAAAGTCATATGCAAACCTGGTCAAGTCCAAGAATATGCCGATGAAATTGCAAGACTGAGTGGCGGCATCCCAATTCAGATAATTGCAGATGATACAATAGTTTTTTACAGAGGAAGGGATTATGTGCAACCCGAAATTATGTCTCCTATTGATACACTGTCAAAGAAGAAG : GCATTGGAAAAATCCAAATATGAGCAGTCGCTAGAGTCTGTGAGACGTTTCATTGCGATTGCTGAAAAGGAACTTGAACTCTACTACCGACATGTCGCTCTATATGGTGACCCAAGTAACCGAAGTGCTTACTCCATCCTTGATGATTCAAGAAGCACAAGAGGAAAACGAAATGCTGAGATAGGTGAGGAGAACTATTCAGCAAGCAAATCTAATATGTTGGATCTTGAATTGGAAATTGACGATAGTTGTTCTGATGACAACCAGTCTTTATAATTTGAATTTGAAAATACCTGAATAGGAGTTTTCAATTCCACCTTAGTTTGGAATTAACTACACCTATGTTTTTATCTGCGTAATATATGAAGTTGTTAATTAGCAAGTAGGGGTGTATATGACCGGGTTGATTCAGGTTTTTCAAATATCAAACCAAACCATTTATGTCGAATTTTTGAATTTATAAACCAAATCAAACTCATGTTTTTC</gDNA_template>
            <first_frame> P  E  T  P  S  I  T  T  I  T  P  :  K  W  I  K  F  A  E  T  G  A  G  *  D  G  Y  T  Y  Y  S  S  L  N  P  L  F  I  H  K  N  I  :  *  *  I  A  *  F  R  E  S  S  R  *  S  S  S  P  A  P  L  K  A  N  N  N  I  I  W  L  F  L  Y  L  E  V  F  E  D  F  C  Y  F  H  I  A  G  L  Y  P  L  P  L  P  R  T   : R  Q  F  L  E  T  E  K  A  F  C  T  C  Q  G  L  C  L  K  I  A  *  P  D  K  A  H  V  G  T  *  G  T  L  V  M  E  V  *  I  L  L  *  Q  K  M  G  N  P  S  L  R  H  M  K  W  K  H  Q  R  K  K  N  G  R  Q  R  R  G  *  S  C  K  G  R  E  R  R  R  R  E  M  L  Q  I  R  G  I  Q  E  G  L  V  *  R  G  R  R  R  S  R  S  L  T  L  L  K  K  E  L  S  R  R  *  K  M :   Q  K  S  K  K  R  C  *  L  R  D  *  S  D  M  R  L  P  K  F  K  V  L  R  L  S  H  T  S  S  L  A  K  N  D  S  I  *  K  R  W  G  K  K  G  L  I  M  C  Q  L  A  E  G  E  S  L  V  V  L  F  L  I  C  I  Y  I  G  K  N  M  K  Q  S  K  S  Y  A  N  L  V  K  S  K  N  M  P  M  K  L  Q  D  *  V  A  A  S  Q  F  R  *  L  Q  M  I  Q  *  F  F  T  E  E  G  I  M  C  N  P  K  L  C  L  L  L  I  H  C  Q  R  R  R :   H  W  K  N  P  N  M  S  S  R  *  S  L  *  D  V  S  L  R  L  L  K  R  N  L  N  S  T  T  D  M  S  L  Y  M  V  T  Q  V  T  E  V  L  T  P  S  L  M  I  Q  E  A  Q  E  E  N  E  M  L  R  *  V  R  R  T  I  Q  Q  A  N  L  I  C  W  I  L  N  W  K  L  T  I  V  V  L  M  T  T  S  L  Y  N  L  N  L  K  I  P  E  *  E  F  S  I  P  P  *  F  G  I  N  Y  T  Y  V  F  I  C  V  I  Y  E  V  V  N  *  Q  V  G  V  Y  M  T  G  L  I  Q  V  F  Q  I  S  N  Q  T  I  Y  V  E  F  L  N  L  *  T  K  S  N  S  C  F   </first_frame>
            <second_frame>  L  R  L  H  R  S  P  P  *  L  R :   N  G  L  S  L  L  K  L  V  P  D  K  M  D  T  H  I  I  H  H  S  T  H  Y  L  S  I  K  I  Y :   D  K  *  P  N  F  E  S  L  H  G  E  V  A  R  Q  P  R  *  R  Q  T  T  T  L  Y  G  Y  S  S  I  *  K  F  S  K  T  S  V  T  F  T  S  Q  A  S  I  L  F  L  Y  L  V  H  :  A  N  S  W  K  P  R  K  L  F  A  L  V  K  V  C  A  S  K  *  L  N  P  T  R  L  M  L  G  L  E  E  L  *  S  W  K  C  E  F  C  Y  N  K  R  W  E  T  Q  V  *  D  T  *  S  G  S  T  K  E  R  K  M  E  D  K  E  E  A  E  A  A  K  E  E  R  E  E  E  E  K  C  C  K  *  E  G  S  K  K  A  W  S  K  G  E  E  E  E  A  E  V  *  H  C  *  R  K  N  *  A  E  D  R  K   : C  K  S  Q  R  S  A  V  D  *  E  T  K  A  I  *  G  Y  Q  S  S  R  S  *  G  *  A  T  L  P  H  W  R  R  T  I  L  Y  K  K  D  G  A  K  K  V  *  L  C  A  N  W  Q  K  G  S  L  W  W  C  Y  S  *  Y  A  F  T  L  E  K  T  *  N  S  Q  S  H  M  Q  T  W  S  S  P  R  I  C  R  *  N  C  K  T  E  W  R  H  P  N  S  D  N  C  R  *  Y  N  S  F  L  Q  R  K  G  L  C  A  T  R  N  Y  V  S  Y  *  Y  T  V  K  E  E   : G  I  G  K  I  Q  I  *  A  V  A  R  V  C  E  T  F  H  C  D  C  *  K  G  T  *  T  L  L  P  T  C  R  S  I  W  *  P  K  *  P  K  C  L  L  H  P  *  *  F  K  K  H  K  R  K  T  K  C  *  D  R  *  G  E  L  F  S  K  Q  I  *  Y  V  G  S  *  I  G  N  *  R  *  L  F  *  *  Q  P  V  F  I  I  *  I  *  K  Y  L  N  R  S  F  Q  F  H  L  S  L  E  L  T  T  P  M  F  L  S  A  *  Y  M  K  L  L  I  S  K  *  G  C  I  *  P  G  *  F  R  F  F  K  Y  Q  T  K  P  F  M  S  N  F  *  I  Y  K  P  N  Q  T  H  V  F  </second_frame>
            <third_frame>   *  D  S  I  D  H  H  H  N  S   : E  M  D  *  V  C  *  N  W  C  R  I  R  W  I  H  I  L  F  I  T  Q  P  I  I  Y  P  *  K  Y   : M  I  N  S  L  I  S  R  V  F  T  V  K  *  L  A  S  P  V  E  G  K  Q  Q  H  Y  M  A  I  P  L  F  R  S  F  R  R  L  L  L  L  S  H  R  R  P  L  S  S  S  S  T  S  Y  T :   P  I  L  G  N  R  E  S  F  L  H  L  S  R  F  V  P  Q  N  S  L  T  R  Q  G  S  C  W  D  L  R  N  F  S  H  G  S  V  N  F  V  I  T  K  D  G  K  P  K  F  E  T  H  E  V  E  A  P  K  K  E  K  W  K  T  K  K  R  L  K  L  Q  R  K  R  E  K  K  K  R  N  A  A  N  K  R  D  P  R  R  L  G  L  K  G  K  K  K  K  Q  K  F  D  T  A  E  E  R  I  K  Q  K  I  E  N  :  A  K  V  K  E  A  L  L  I  E  R  L  K  R  Y  E  V  T  K  V  Q  G  P  E  V  K  P  H  F  L  T  G  E  E  R  F  Y  I  K  K  M  G  Q  K  R  S  N  Y  V  P  I  G  R  R  G  V  F  G  G  V  I  L  N  M  H  L  H  W  K  K  H  E  T  V  K  V  I  C  K  P  G  Q  V  Q  E  Y  A  D  E  I  A  R  L  S  G  G  I  P  I  Q  I  I  A  D  D  T  I  V  F  Y  R  G  R  D  Y  V  Q  P  E  I  M  S  P  I  D  T  L  S  K  K  K  :  A  L  E  K  S  K  Y  E  Q  S  L  E  S  V  R  R  F  I  A  I  A  E  K  E  L  E  L  Y  Y  R  H  V  A  L  Y  G  D  P  S  N  R  S  A  Y  S  I  L  D  D  S  R  S  T  R  G  K  R  N  A  E  I  G  E  E  N  Y  S  A  S  K  S  N  M  L  D  L  E  L  E  I  D  D  S  C  S  D  D  N  Q  S  L  *  F  E  F  E  N  T  *  I  G  V  F  N  S  T  L  V  W  N  *  L  H  L  C  F  Y  L  R  N  I  *  S  C  *  L  A  S  R  G  V  Y  D  R  V  D  S  G  F  S  N  I  K  P  N  H  L  C  R  I  F  E  F  I  N  Q  I  K  L  M  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61572" stop="61451"/>
                    <exon start="61336" stop="60991"/>
                    <exon start="60037" stop="59645"/>
                    <exon start="58988" stop="58713"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LASPVEGKQQHYMAIPLFRSFRRLLLLSHRRPLSSSSTSYTPILGNRESFLHLSRFVPQNSLTRQGSCWDLRNFSHGSVNFVITKDGKPKFETHEVEAPKKEKWKTKKRLKLQRKREKKKRNAANKRDPRRLGLKGKKKKQKFDTAEERIKQKIENAKVKEALLIERLKRYEVTKVQGPEVKPHFLTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICKPGQVQEYADEIARLSGGIPIQIIADDTIVFYRGRDYVQPEIMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPSNRSAYSILDDSRSTRGKRNAEIGEENYSASKSNMLDLELEIDDSCSDDNQSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="62952" e_stop="62489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="62952" e_stop="62489" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62952" stop="62489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325386" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATCGATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCCATCAATCACCACCATAACTCCGGTGAGTTTTCTCTTTCTCTCTCTTCCTTCTTCTTCTTCATATATCGTCTCTTTCCCTGCATCTAGATGCCCTCCATCCATGTTCCCCTAGGTCCATGGTAATTCGAAAATAGGATGTGTGAATCGGTGAAAATGTTGAGCTCCTCTTTTGATTTGCTTCCTTATGTTAGGATTCTCAATGATTAACTGCTACCCAACTATGAATCCCGAAACTTGGAATGGTGCATGATCACTGAATATGTTGTGCACATGAAGTGCTCGACGAATTGTCACACTAAAATTCTCACAATGTGGATCCTATCTGTCAGGTTAATCAAGTTGCTGATTCATTTCCTTATTTATAAAGTAATCCAGTTTGGGTTTTTAAGTATACCCTGGGAACTATGAGTCATAAT</gDNA_template>
            <first_frame> S  I  D  H  H  H  N  S  G  E  F  S  L  S  L  S  I  N  H  H  H  N  S  G  E  F  S  L  S  L  S  S  F  F  F  F  I  Y  R  L  F  P  C  I  *  M  P  S  I  H  V  P  L  G  P  W  *  F  E  N  R  M  C  E  S  V  K  M  L  S  S  S  F  D  L  L  P  Y  V  R  I  L  N  D  *  L  L  P  N  Y  E  S  R  N  L  E  W  C  M  I  T  E  Y  V  V  H  M  K  C  S  T  N  C  H  T  K  I  L  T  M  W  I  L  S  V  R  L  I  K  L  L  I  H  F  L  I  Y  K  V  I  Q  F  G  F  L  S  I  P  W  E  L  *  V  I   </first_frame>
            <second_frame>  P  S  I  T  T  I  T  P  V  S  F  L  F  L  S  P  S  I  T  T  I  T  P  V  S  F  L  F  L  S  L  P  S  S  S  S  Y  I  V  S  F  P  A  S  R  C  P  P  S  M  F  P  *  V  H  G  N  S  K  I  G  C  V  N  R  *  K  C  *  A  P  L  L  I  C  F  L  M  L  G  F  S  M  I  N  C  Y  P  T  M  N  P  E  T  W  N  G  A  *  S  L  N  M  L  C  T  *  S  A  R  R  I  V  T  L  K  F  S  Q  C  G  S  Y  L  S  G  *  S  S  C  *  F  I  S  L  F  I  K  *  S  S  L  G  F  *  V  Y  P  G  N  Y  E  S  *  </second_frame>
            <third_frame>   H  R  S  P  P  *  L  R  *  V  F  S  F  S  L  H  Q  S  P  P  *  L  R  *  V  F  S  F  S  L  F  L  L  L  L  H  I  S  S  L  S  L  H  L  D  A  L  H  P  C  S  P  R  S  M  V  I  R  K  *  D  V  *  I  G  E  N  V  E  L  L  F  *  F  A  S  L  C  *  D  S  Q  *  L  T  A  T  Q  L  *  I  P  K  L  G  M  V  H  D  H  *  I  C  C  A  H  E  V  L  D  E  L  S  H  *  N  S  H  N  V  D  P  I  C  Q  V  N  Q  V  A  D  S  F  P  Y  L  *  S  N  P  V  W  V  F  K  Y  T  L  G  T  M  S  H  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62697" stop="62497"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLPNYESRNLEWCMITEYVVHMKCSTNCHTKILTMWILSVRLIKLLIHFLIYKVIQFGFLSIPWEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="66403" PGL_stop="63349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66403" e_stop="66169"/>
            <exon e_start="65671" e_stop="65465"/>
            <exon e_start="65362" e_stop="65270"/>
            <exon e_start="65185" e_stop="65081"/>
            <exon e_start="64994" e_stop="64620"/>
            <exon e_start="64478" e_stop="64389"/>
            <exon e_start="63843" e_stop="63835"/>
            <exon e_start="63721" e_stop="63662"/>
            <exon e_start="63456" e_stop="63358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="0.979"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="0.976"/>
          <exon-intron don_prob="0.923" acc_prob="0.978" e_score="0.978"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="0.981"/>
          <exon-intron don_prob="0.861" acc_prob="0.968" e_score="0.965"/>
          <exon-intron don_prob="1.000" acc_prob="0.212" e_score="0.978"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.667"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.817"/>
          <exon-only e_score="0.677"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="66403" e_stop="66169" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66168" i_stop="65672" i_length="497"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="65671" e_stop="65465" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="65464" i_stop="65363" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="65362" e_stop="65270" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.923" acc_prob="0.978">
            <gDNA_intron_boundary i_start="65269" i_stop="65186" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="65185" e_stop="65081" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65080" i_stop="64995" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="64994" e_stop="64620" e_length="375"/>
          </exon>
          <intron i_serial="5" don_prob="0.861" acc_prob="0.968">
            <gDNA_intron_boundary i_start="64619" i_stop="64479" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="64478" e_stop="64389" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.212">
            <gDNA_intron_boundary i_start="64388" i_stop="63844" i_length="545"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="63843" e_stop="63835" e_length="9"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63834" i_stop="63722" i_length="113"/>
          </intron>
          <exon e_serial="8" e_score="0.817">
            <gDNA_exon_boundary e_start="63721" e_stop="63662" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63661" i_stop="63457" i_length="205"/>
          </intron>
          <exon e_serial="9" e_score="0.677">
            <gDNA_exon_boundary e_start="63456" e_stop="63358" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66403" stop="66169"/>
              <exon start="65671" stop="65465"/>
              <exon start="65362" stop="65270"/>
              <exon start="65185" stop="65081"/>
              <exon start="64994" stop="64899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66403" stop="66169"/>
              <exon start="65671" stop="65465"/>
              <exon start="65362" stop="65270"/>
              <exon start="65185" stop="65081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65618" stop="65465"/>
              <exon start="65362" stop="65270"/>
              <exon start="65185" stop="65081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65184" stop="65081"/>
              <exon start="64994" stop="64620"/>
              <exon start="64478" stop="64389"/>
              <exon start="63843" stop="63835"/>
              <exon start="63721" stop="63662"/>
              <exon start="63456" stop="63358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAGGGAAGGGGGAAGACAACTGGACTTTCAATCCAAAAGAAACTCAAGGAAAGTGTCAATGGAAAGTTGAAGGTAATTATCCCACCGGATCGAACAGTAGCAGTAGGTCCTGGAGCTAAAGATTTTGTTACTGAGCTCTCAGTGACAGTTCTCCATAATGCTAGGCATGATGTCAAGAATTGGAAGGGAGTTTCTGATCTTGCAAAAGATAGGATTGTTGCTCATATGCTG : GATACCTTCCAGCTTCCAGACATACAACATAATCGGGATACTATCCTTCAAACAGCTAAAAATTTATATCGATATCGCCGTAGTAGGCTACATGATCATTTCAAGAAATTTGCTACAAAAGAGTTAAGGTTGCAAAACATGCCATCACAGGTTAATGAAGCTGAATGGAAATTCTTGGTGGAATATTTCATCTCTGACGATTTTAAG : AAAATGAGTGAAAGAAATAAAAGTAATAAGGCAAAACAAGAAGTGAATCATATTTGCGGCAGAAAATCCTTCCAAGCAGTATCATTTGAAGCA : AGAGACACAAACACCGGAAAAGAGCCAAACTCTCAGAAATTTTGGGAAATGACTCACGTGAACTCAAATGGGCATTGGGTTAATGATGCTTCTGCTGAAGTGAAT : GATAAGGTGAAAGAAGTTGTTGCTGAACAAATTCAAGAAATTGAAGAGGGTGCCGATGTGGACCTTATTGCTAATGCTGCATTTATGCATATTATGAGAGAAAAAGCAGGGTATGTTCGTGGTCAAGGATCGGGAGTTAAGCCAGCGAGTAGGAGATCCAGAGATGAAATTCAAGAGCAACTGGAAGCACAACAAAAGGAGATAGAAGAAGAACGACGTAAACGAGAAAGTTTAGAAAGCAAGCTAATGGAAGTAAAATATCAGCTTGAAGAGGAGCGGAGAAGTCGAGAAGTCATGGAAACTCGTATAGTGCGTGAGCAAAAATTGTTAAAAGAGGGTGTAATGGCATTAGTATCCCATATGCAAAGTTCCATG : AATGGACTTCCTGCTGCAATTTTCAACATCATTAATAACTCAACTGGTTCAGACGAGGCACGTCCTACAAGTCTTATGGATAAAAACTAG : AATGTGAAC : GATGATCAAACATTGTTGCTGACAATATGGTTCATGTAATGCACAACCCATTGCAAGAAA : TGAAGTCGAGACTACTCTTGAAATTAGAATGTTTATATCCTTTTGTTCTTTCTGTAAGTAAAAATAAAAGTATATATTTAGGAGTATTAGTTTTTGGAA</gDNA_template>
            <first_frame> K  K  G  K  G  E  D  N  W  T  F  N  P  K  E  T  Q  G  K  C  Q  W  K  V  E  G  N  Y  P  T  G  S  N  S  S  S  R  S  W  S  *  R  F  C  Y  *  A  L  S  D  S  S  P  *  C  *  A  *  C  Q  E  L  E  G  S  F  *  S  C  K  R  *  D  C  C  S  Y  A   : G  Y  L  P  A  S  R  H  T  T  *  S  G  Y  Y  P  S  N  S  *  K  F  I  S  I  S  P  *  *  A  T  *  S  F  Q  E  I  C  Y  K  R  V  K  V  A  K  H  A  I  T  G  *  *  S  *  M  E  I  L  G  G  I  F  H  L  *  R  F  *   : E  N  E  *  K  K  *  K  *  *  G  K  T  R  S  E  S  Y  L  R  Q  K  I  L  P  S  S  I  I  *  S   : K  R  H  K  H  R  K  R  A  K  L  S  E  I  L  G  N  D  S  R  E  L  K  W  A  L  G  *  *  C  F  C  *  S  E   : *  *  G  E  R  S  C  C  *  T  N  S  R  N  *  R  G  C  R  C  G  P  Y  C  *  C  C  I  Y  A  Y  Y  E  R  K  S  R  V  C  S  W  S  R  I  G  S  *  A  S  E  *  E  I  Q  R  *  N  S  R  A  T  G  S  T  T  K  G  D  R  R  R  T  T  *  T  R  K  F  R  K  Q  A  N  G  S  K  I  S  A  *  R  G  A  E  K  S  R  S  H  G  N  S  Y  S  A  *  A  K  I  V  K  R  G  C  N  G  I  S  I  P  Y  A  K  F  H   : E  W  T  S  C  C  N  F  Q  H  H  *  *  L  N  W  F  R  R  G  T  S  Y  K  S  Y  G  *  K  L   : E  C  E   : R  *  S  N  I  V  A  D  N  M  V  H  V  M  H  N  P  L  Q  E   : M  K  S  R  L  L  L  K  L  E  C  L  Y  P  F  V  L  S  V  S  K  N  K  S  I  Y  L  G  V  L  V  F  G  </first_frame>
            <second_frame>  R  K  G  R  G  K  T  T  G  L  S  I  Q  K  K  L  K  E  S  V  N  G  K  L  K  V  I  I  P  P  D  R  T  V  A  V  G  P  G  A  K  D  F  V  T  E  L  S  V  T  V  L  H  N  A  R  H  D  V  K  N  W  K  G  V  S  D  L  A  K  D  R  I  V  A  H  M  L  :  D  T  F  Q  L  P  D  I  Q  H  N  R  D  T  I  L  Q  T  A  K  N  L  Y  R  Y  R  R  S  R  L  H  D  H  F  K  K  F  A  T  K  E  L  R  L  Q  N  M  P  S  Q  V  N  E  A  E  W  K  F  L  V  E  Y  F  I  S  D  D  F  K  :  K  M  S  E  R  N  K  S  N  K  A  K  Q  E  V  N  H  I  C  G  R  K  S  F  Q  A  V  S  F  E  A  :  R  D  T  N  T  G  K  E  P  N  S  Q  K  F  W  E  M  T  H  V  N  S  N  G  H  W  V  N  D  A  S  A  E  V  N  :  D  K  V  K  E  V  V  A  E  Q  I  Q  E  I  E  E  G  A  D  V  D  L  I  A  N  A  A  F  M  H  I  M  R  E  K  A  G  Y  V  R  G  Q  G  S  G  V  K  P  A  S  R  R  S  R  D  E  I  Q  E  Q  L  E  A  Q  Q  K  E  I  E  E  E  R  R  K  R  E  S  L  E  S  K  L  M  E  V  K  Y  Q  L  E  E  E  R  R  S  R  E  V  M  E  T  R  I  V  R  E  Q  K  L  L  K  E  G  V  M  A  L  V  S  H  M  Q  S  S  M  :  N  G  L  P  A  A  I  F  N  I  I  N  N  S  T  G  S  D  E  A  R  P  T  S  L  M  D  K  N  *  :  N  V  N  :  D  D  Q  T  L  L  L  T  I  W  F  M  *  C  T  T  H  C  K  K  :  *  S  R  D  Y  S  *  N  *  N  V  Y  I  L  L  F  F  L  *  V  K  I  K  V  Y  I  *  E  Y  *  F  L  E </second_frame>
            <third_frame>   E  R  E  G  G  R  Q  L  D  F  Q  S  K  R  N  S  R  K  V  S  M  E  S  *  R  *  L  S  H  R  I  E  Q  *  Q  *  V  L  E  L  K  I  L  L  L  S  S  Q  *  Q  F  S  I  M  L  G  M  M  S  R  I  G  R  E  F  L  I  L  Q  K  I  G  L  L  L  I  C  W :   I  P  S  S  F  Q  T  Y  N  I  I  G  I  L  S  F  K  Q  L  K  I  Y  I  D  I  A  V  V  G  Y  M  I  I  S  R  N  L  L  Q  K  S  *  G  C  K  T  C  H  H  R  L  M  K  L  N  G  N  S  W  W  N  I  S  S  L  T  I  L  R :   K  *  V  K  E  I  K  V  I  R  Q  N  K  K  *  I  I  F  A  A  E  N  P  S  K  Q  Y  H  L  K  Q :   E  T  Q  T  P  E  K  S  Q  T  L  R  N  F  G  K  *  L  T  *  T  Q  M  G  I  G  L  M  M  L  L  L  K  *  M :   I  R  *  K  K  L  L  L  N  K  F  K  K  L  K  R  V  P  M  W  T  L  L  L  M  L  H  L  C  I  L  *  E  K  K  Q  G  M  F  V  V  K  D  R  E  L  S  Q  R  V  G  D  P  E  M  K  F  K  S  N  W  K  H  N  K  R  R  *  K  K  N  D  V  N  E  K  V  *  K  A  S  *  W  K  *  N  I  S  L  K  R  S  G  E  V  E  K  S  W  K  L  V  *  C  V  S  K  N  C  *  K  R  V  *  W  H  *  Y  P  I  C  K  V  P  * :   M  D  F  L  L  Q  F  S  T  S  L  I  T  Q  L  V  Q  T  R  H  V  L  Q  V  L  W  I  K  T  R :   M  *  T :   M  I  K  H  C  C  *  Q  Y  G  S  C  N  A  Q  P  I  A  R  N :   E  V  E  T  T  L  E  I  R  M  F  I  S  F  C  S  F  C  K  *  K  *  K  Y  I  F  R  S  I  S  F  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66402" stop="66169"/>
                    <exon start="65671" stop="65465"/>
                    <exon start="65362" stop="65270"/>
                    <exon start="65185" stop="65081"/>
                    <exon start="64994" stop="64620"/>
                    <exon start="64478" stop="64389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKGRGKTTGLSIQKKLKESVNGKLKVIIPPDRTVAVGPGAKDFVTELSVTVLHNARHDVKNWKGVSDLAKDRIVAHMLDTFQLPDIQHNRDTILQTAKNLYRYRRSRLHDHFKKFATKELRLQNMPSQVNEAEWKFLVEYFISDDFKKMSERNKSNKAKQEVNHICGRKSFQAVSFEARDTNTGKEPNSQKFWEMTHVNSNGHWVNDASAEVNDKVKEVVAEQIQEIEEGADVDLIANAAFMHIMREKAGYVRGQGSGVKPASRRSRDEIQEQLEAQQKEIEEERRKRESLESKLMEVKYQLEEERRSREVMETRIVREQKLLKEGVMALVSHMQSSMNGLPAAIFNIINNSTGSDEARPTSLMDKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66403" e_stop="66169"/>
            <exon e_start="65671" e_stop="65465"/>
            <exon e_start="65362" e_stop="65270"/>
            <exon e_start="65185" e_stop="65081"/>
            <exon e_start="64994" e_stop="64620"/>
            <exon e_start="64478" e_stop="64389"/>
            <exon e_start="63843" e_stop="63835"/>
            <exon e_start="63721" e_stop="63662"/>
            <exon e_start="63530" e_stop="63519"/>
            <exon e_start="63446" e_stop="63349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.988" e_score="0.979"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="0.976"/>
          <exon-intron don_prob="0.923" acc_prob="0.978" e_score="0.978"/>
          <exon-intron don_prob="0.981" acc_prob="0.996" e_score="0.981"/>
          <exon-intron don_prob="0.861" acc_prob="0.968" e_score="0.953"/>
          <exon-intron don_prob="1.000" acc_prob="0.212" e_score="0.978"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.667"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.817"/>
          <exon-intron don_prob="0.916" acc_prob="0.000" e_score="0.583"/>
          <exon-only e_score="0.735"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="66403" e_stop="66169" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66168" i_stop="65672" i_length="497"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="65671" e_stop="65465" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="65464" i_stop="65363" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="65362" e_stop="65270" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.923" acc_prob="0.978">
            <gDNA_intron_boundary i_start="65269" i_stop="65186" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="65185" e_stop="65081" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65080" i_stop="64995" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.953">
            <gDNA_exon_boundary e_start="64994" e_stop="64620" e_length="375"/>
          </exon>
          <intron i_serial="5" don_prob="0.861" acc_prob="0.968">
            <gDNA_intron_boundary i_start="64619" i_stop="64479" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="64478" e_stop="64389" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.212">
            <gDNA_intron_boundary i_start="64388" i_stop="63844" i_length="545"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="63843" e_stop="63835" e_length="9"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63834" i_stop="63722" i_length="113"/>
          </intron>
          <exon e_serial="8" e_score="0.817">
            <gDNA_exon_boundary e_start="63721" e_stop="63662" e_length="60"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63661" i_stop="63531" i_length="131"/>
          </intron>
          <exon e_serial="9" e_score="0.583">
            <gDNA_exon_boundary e_start="63530" e_stop="63519" e_length="12"/>
          </exon>
          <intron i_serial="9" don_prob="0.916" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63518" i_stop="63447" i_length="72"/>
          </intron>
          <exon e_serial="10" e_score="0.735">
            <gDNA_exon_boundary e_start="63446" e_stop="63349" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66403" stop="66169"/>
              <exon start="65671" stop="65465"/>
              <exon start="65362" stop="65270"/>
              <exon start="65185" stop="65081"/>
              <exon start="64994" stop="64899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66403" stop="66169"/>
              <exon start="65671" stop="65465"/>
              <exon start="65362" stop="65270"/>
              <exon start="65185" stop="65081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65618" stop="65465"/>
              <exon start="65362" stop="65270"/>
              <exon start="65185" stop="65081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64962" stop="64620"/>
              <exon start="64478" stop="64389"/>
              <exon start="63843" stop="63835"/>
              <exon start="63721" stop="63662"/>
              <exon start="63530" stop="63519"/>
              <exon start="63446" stop="63349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429515" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAGGGAAGGGGGAAGACAACTGGACTTTCAATCCAAAAGAAACTCAAGGAAAGTGTCAATGGAAAGTTGAAGGTAATTATCCCACCGGATCGAACAGTAGCAGTAGGTCCTGGAGCTAAAGATTTTGTTACTGAGCTCTCAGTGACAGTTCTCCATAATGCTAGGCATGATGTCAAGAATTGGAAGGGAGTTTCTGATCTTGCAAAAGATAGGATTGTTGCTCATATGCTG : GATACCTTCCAGCTTCCAGACATACAACATAATCGGGATACTATCCTTCAAACAGCTAAAAATTTATATCGATATCGCCGTAGTAGGCTACATGATCATTTCAAGAAATTTGCTACAAAAGAGTTAAGGTTGCAAAACATGCCATCACAGGTTAATGAAGCTGAATGGAAATTCTTGGTGGAATATTTCATCTCTGACGATTTTAAG : AAAATGAGTGAAAGAAATAAAAGTAATAAGGCAAAACAAGAAGTGAATCATATTTGCGGCAGAAAATCCTTCCAAGCAGTATCATTTGAAGCA : AGAGACACAAACACCGGAAAAGAGCCAAACTCTCAGAAATTTTGGGAAATGACTCACGTGAACTCAAATGGGCATTGGGTTAATGATGCTTCTGCTGAAGTGAAT : GATAAGGTGAAAGAAGTTGTTGCTGAACAAATTCAAGAAATTGAAGAGGGTGCCGATGTGGACCTTATTGCTAATGCTGCATTTATGCATATTATGAGAGAAAAAGCAGGGTATGTTCGTGGTCAAGGATCGGGAGTTAAGCCAGCGAGTAGGAGATCCAGAGATGAAATTCAAGAGCAACTGGAAGCACAACAAAAGGAGATAGAAGAAGAACGACGTAAACGAGAAAGTTTAGAAAGCAAGCTAATGGAAGTAAAATATCAGCTTGAAGAGGAGCGGAGAAGTCGAGAAGTCATGGAAACTCGTATAGTGCGTGAGCAAAAATTGTTAAAAGAGGGTGTAATGGCATTAGTATCCCATATGCAAAGTTCCATG : AATGGACTTCCTGCTGCAATTTTCAACATCATTAATAACTCAACTGGTTCAGACGAGGCACGTCCTACAAGTCTTATGGATAAAAACTAG : AATGTGAAC : GATGATCAAACATTGTTGCTGACAATATGGTTCATGTAATGCACAACCCATTGCAAGAAA : GAATATCTAAAG : ACTACTCTTGAAATTAGAATGTTTATATCCTTTTGTTCTTTCTGTAAGTAAAAATAAAAGTATATATTTAGGAGTATTAGTTTTTGGAAGTTACTAAA</gDNA_template>
            <first_frame> K  K  G  K  G  E  D  N  W  T  F  N  P  K  E  T  Q  G  K  C  Q  W  K  V  E  G  N  Y  P  T  G  S  N  S  S  S  R  S  W  S  *  R  F  C  Y  *  A  L  S  D  S  S  P  *  C  *  A  *  C  Q  E  L  E  G  S  F  *  S  C  K  R  *  D  C  C  S  Y  A   : G  Y  L  P  A  S  R  H  T  T  *  S  G  Y  Y  P  S  N  S  *  K  F  I  S  I  S  P  *  *  A  T  *  S  F  Q  E  I  C  Y  K  R  V  K  V  A  K  H  A  I  T  G  *  *  S  *  M  E  I  L  G  G  I  F  H  L  *  R  F  *   : E  N  E  *  K  K  *  K  *  *  G  K  T  R  S  E  S  Y  L  R  Q  K  I  L  P  S  S  I  I  *  S   : K  R  H  K  H  R  K  R  A  K  L  S  E  I  L  G  N  D  S  R  E  L  K  W  A  L  G  *  *  C  F  C  *  S  E   : *  *  G  E  R  S  C  C  *  T  N  S  R  N  *  R  G  C  R  C  G  P  Y  C  *  C  C  I  Y  A  Y  Y  E  R  K  S  R  V  C  S  W  S  R  I  G  S  *  A  S  E  *  E  I  Q  R  *  N  S  R  A  T  G  S  T  T  K  G  D  R  R  R  T  T  *  T  R  K  F  R  K  Q  A  N  G  S  K  I  S  A  *  R  G  A  E  K  S  R  S  H  G  N  S  Y  S  A  *  A  K  I  V  K  R  G  C  N  G  I  S  I  P  Y  A  K  F  H   : E  W  T  S  C  C  N  F  Q  H  H  *  *  L  N  W  F  R  R  G  T  S  Y  K  S  Y  G  *  K  L   : E  C  E   : R  *  S  N  I  V  A  D  N  M  V  H  V  M  H  N  P  L  Q  E   : R  I  S  K   : D  Y  S  *  N  *  N  V  Y  I  L  L  F  F  L  *  V  K  I  K  V  Y  I  *  E  Y  *  F  L  E  V  T  K </first_frame>
            <second_frame>  R  K  G  R  G  K  T  T  G  L  S  I  Q  K  K  L  K  E  S  V  N  G  K  L  K  V  I  I  P  P  D  R  T  V  A  V  G  P  G  A  K  D  F  V  T  E  L  S  V  T  V  L  H  N  A  R  H  D  V  K  N  W  K  G  V  S  D  L  A  K  D  R  I  V  A  H  M  L  :  D  T  F  Q  L  P  D  I  Q  H  N  R  D  T  I  L  Q  T  A  K  N  L  Y  R  Y  R  R  S  R  L  H  D  H  F  K  K  F  A  T  K  E  L  R  L  Q  N  M  P  S  Q  V  N  E  A  E  W  K  F  L  V  E  Y  F  I  S  D  D  F  K  :  K  M  S  E  R  N  K  S  N  K  A  K  Q  E  V  N  H  I  C  G  R  K  S  F  Q  A  V  S  F  E  A  :  R  D  T  N  T  G  K  E  P  N  S  Q  K  F  W  E  M  T  H  V  N  S  N  G  H  W  V  N  D  A  S  A  E  V  N  :  D  K  V  K  E  V  V  A  E  Q  I  Q  E  I  E  E  G  A  D  V  D  L  I  A  N  A  A  F  M  H  I  M  R  E  K  A  G  Y  V  R  G  Q  G  S  G  V  K  P  A  S  R  R  S  R  D  E  I  Q  E  Q  L  E  A  Q  Q  K  E  I  E  E  E  R  R  K  R  E  S  L  E  S  K  L  M  E  V  K  Y  Q  L  E  E  E  R  R  S  R  E  V  M  E  T  R  I  V  R  E  Q  K  L  L  K  E  G  V  M  A  L  V  S  H  M  Q  S  S  M  :  N  G  L  P  A  A  I  F  N  I  I  N  N  S  T  G  S  D  E  A  R  P  T  S  L  M  D  K  N  *  :  N  V  N  :  D  D  Q  T  L  L  L  T  I  W  F  M  *  C  T  T  H  C  K  K  :  E  Y  L  K  :  T  T  L  E  I  R  M  F  I  S  F  C  S  F  C  K  *  K  *  K  Y  I  F  R  S  I  S  F  W  K  L  L   </second_frame>
            <third_frame>   E  R  E  G  G  R  Q  L  D  F  Q  S  K  R  N  S  R  K  V  S  M  E  S  *  R  *  L  S  H  R  I  E  Q  *  Q  *  V  L  E  L  K  I  L  L  L  S  S  Q  *  Q  F  S  I  M  L  G  M  M  S  R  I  G  R  E  F  L  I  L  Q  K  I  G  L  L  L  I  C  W :   I  P  S  S  F  Q  T  Y  N  I  I  G  I  L  S  F  K  Q  L  K  I  Y  I  D  I  A  V  V  G  Y  M  I  I  S  R  N  L  L  Q  K  S  *  G  C  K  T  C  H  H  R  L  M  K  L  N  G  N  S  W  W  N  I  S  S  L  T  I  L  R :   K  *  V  K  E  I  K  V  I  R  Q  N  K  K  *  I  I  F  A  A  E  N  P  S  K  Q  Y  H  L  K  Q :   E  T  Q  T  P  E  K  S  Q  T  L  R  N  F  G  K  *  L  T  *  T  Q  M  G  I  G  L  M  M  L  L  L  K  *  M :   I  R  *  K  K  L  L  L  N  K  F  K  K  L  K  R  V  P  M  W  T  L  L  L  M  L  H  L  C  I  L  *  E  K  K  Q  G  M  F  V  V  K  D  R  E  L  S  Q  R  V  G  D  P  E  M  K  F  K  S  N  W  K  H  N  K  R  R  *  K  K  N  D  V  N  E  K  V  *  K  A  S  *  W  K  *  N  I  S  L  K  R  S  G  E  V  E  K  S  W  K  L  V  *  C  V  S  K  N  C  *  K  R  V  *  W  H  *  Y  P  I  C  K  V  P  * :   M  D  F  L  L  Q  F  S  T  S  L  I  T  Q  L  V  Q  T  R  H  V  L  Q  V  L  W  I  K  T  R :   M  *  T :   M  I  K  H  C  C  *  Q  Y  G  S  C  N  A  Q  P  I  A  R  K :   N  I  *  R :   L  L  L  K  L  E  C  L  Y  P  F  V  L  S  V  S  K  N  K  S  I  Y  L  G  V  L  V  F  G  S  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66402" stop="66169"/>
                    <exon start="65671" stop="65465"/>
                    <exon start="65362" stop="65270"/>
                    <exon start="65185" stop="65081"/>
                    <exon start="64994" stop="64620"/>
                    <exon start="64478" stop="64389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKGRGKTTGLSIQKKLKESVNGKLKVIIPPDRTVAVGPGAKDFVTELSVTVLHNARHDVKNWKGVSDLAKDRIVAHMLDTFQLPDIQHNRDTILQTAKNLYRYRRSRLHDHFKKFATKELRLQNMPSQVNEAEWKFLVEYFISDDFKKMSERNKSNKAKQEVNHICGRKSFQAVSFEARDTNTGKEPNSQKFWEMTHVNSNGHWVNDASAEVNDKVKEVVAEQIQEIEEGADVDLIANAAFMHIMREKAGYVRGQGSGVKPASRRSRDEIQEQLEAQQKEIEEERRKRESLESKLMEVKYQLEEERRSREVMETRIVREQKLLKEGVMALVSHMQSSMNGLPAAIFNIINNSTGSDEARPTSLMDKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="63721" e_stop="63372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63721" e_stop="63372" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63721" stop="63372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224841" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63721" stop="63378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224485" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATCAAACATTGTTGCTGACAATATGGTTCATGTAATGCACAACCCATTGCAAGAAAATATTCTTCAGTTGATGCGCTGGGATGAAAGAAAGTTCTTTGGTGCTCCTCCGGGACGAACAGTAAAGGCACATGAAGGAATTGGCTCTTACTATCGATCGGATGGAGAGATTCGCGGCGCTTTACCTTACGAATATCTAAAGGCGAAGATCTCTTTTCGACTAGCAAGTTTACGTACCTAGGTCCTAAGTTTCTCATTACTCGGTGAAGTCGAGACTACTCTTGAAATTAGAATGTTTATATCCTTTTGTTCTTTCTGTAAGTAAAAATAAAAGTATATATTTAGGAGT</gDNA_template>
            <first_frame> D  D  Q  T  L  L  L  T  I  W  F  M  *  C  T  T  H  C  K  K  I  F  F  S  *  C  A  G  M  K  E  S  S  L  V  L  L  R  D  E  Q  *  R  H  M  K  E  L  A  L  T  I  D  R  M  E  R  F  A  A  L  Y  L  T  N  I  *  R  R  R  S  L  F  D  *  Q  V  Y  V  P  R  S  *  V  S  H  Y  S  V  K  S  R  L  L  L  K  L  E  C  L  Y  P  F  V  L  S  V  S  K  N  K  S  I  Y  L  G   </first_frame>
            <second_frame>  M  I  K  H  C  C  *  Q  Y  G  S  C  N  A  Q  P  I  A  R  K  Y  S  S  V  D  A  L  G  *  K  K  V  L  W  C  S  S  G  T  N  S  K  G  T  *  R  N  W  L  L  L  S  I  G  W  R  D  S  R  R  F  T  L  R  I  S  K  G  E  D  L  F  S  T  S  K  F  T  Y  L  G  P  K  F  L  I  T  R  *  S  R  D  Y  S  *  N  *  N  V  Y  I  L  L  F  F  L  *  V  K  I  K  V  Y  I  *  E  </second_frame>
            <third_frame>   *  S  N  I  V  A  D  N  M  V  H  V  M  H  N  P  L  Q  E  N  I  L  Q  L  M  R  W  D  E  R  K  F  F  G  A  P  P  G  R  T  V  K  A  H  E  G  I  G  S  Y  Y  R  S  D  G  E  I  R  G  A  L  P  Y  E  Y  L  K  A  K  I  S  F  R  L  A  S  L  R  T  *  V  L  S  F  S  L  L  G  E  V  E  T  T  L  E  I  R  M  F  I  S  F  C  S  F  C  K  *  K  *  K  Y  I  F  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63716" stop="63480"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNIVADNMVHVMHNPLQENILQLMRWDERKFFGAPPGRTVKAHEGIGSYYRSDGEIRGALPYEYLKAKISFRLASLRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="75828" PGL_stop="74805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75828" e_stop="75751"/>
            <exon e_start="75622" e_stop="75561"/>
            <exon e_start="75315" e_stop="74805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.917" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75828" e_stop="75751" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.917" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75750" i_stop="75623" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75622" e_stop="75561" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75560" i_stop="75316" i_length="245"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75315" e_stop="74805" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75828" stop="75751"/>
              <exon start="75622" stop="75561"/>
              <exon start="75315" stop="74809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543045" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75827" stop="75751"/>
              <exon start="75622" stop="75561"/>
              <exon start="75315" stop="74805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302619" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAATACATGAAGAAACCCGAGTTTATTGAGCTAATGAGGAGGCTTGGTGCATTAGGTGATGGGAACCAAGACCAAA : GTACTTTATCACCGGACGAATGGGAGGTAGCCTACCTTTATTTGGCATTTGTTCTAAGGAAG : CGAGGGCAACCGGATCAAACACGAAGAAACCCTAGACGAGACAAAGGCAAGATGCAACTGACAAAAGACGATATTGAGAATGTTAACGGTGCAGTGTAGTGCCGAAACGACTGTTATGGGACATGAGGAAGTATCTGAAATGAAGAGGAACAATAAACACAGTCCCCTCTTCAACTCGATAAATCCAGCTGCTAATCAATTTTGCAGAACAAAGACTAATTTTCGCCTTTATCATTTGTTACATCATCAACTCACTGTTGTACTACAACATAAAAAAGTTGATGTGGGCAAAGGTGGCTGGTTCTAATGATACTAGTCACCAGTGCTATGTTCGTTTGTCCACTTGCAACTTTCCATGTAACTCTCTGTATCATTACATATTTATAGTGAGAATGAGAAAATAGCCAAAAATATCAATCTGGGATATTAAGATAAAAATGTTTTAGAGATCTAAGACAATTGAACACTGAGTGACTGATGTCAAGATCAAATATATGTTGTTTGTTTACTT</gDNA_template>
            <first_frame> M  N  T  *  R  N  P  S  L  L  S  *  *  G  G  L  V  H  *  V  M  G  T  K  T  K  :  V  L  Y  H  R  T  N  G  R  *  P  T  F  I  W  H  L  F  *  G  S :   E  G  N  R  I  K  H  E  E  T  L  D  E  T  K  A  R  C  N  *  Q  K  T  I  L  R  M  L  T  V  Q  C  S  A  E  T  T  V  M  G  H  E  E  V  S  E  M  K  R  N  N  K  H  S  P  L  F  N  S  I  N  P  A  A  N  Q  F  C  R  T  K  T  N  F  R  L  Y  H  L  L  H  H  Q  L  T  V  V  L  Q  H  K  K  V  D  V  G  K  G  G  W  F  *  *  Y  *  S  P  V  L  C  S  F  V  H  L  Q  L  S  M  *  L  S  V  S  L  H  I  Y  S  E  N  E  K  I  A  K  N  I  N  L  G  Y  *  D  K  N  V  L  E  I  *  D  N  *  T  L  S  D  *  C  Q  D  Q  I  Y  V  V  C  L  L </first_frame>
            <second_frame>  *  I  H  E  E  T  R  V  Y  *  A  N  E  E  A  W  C  I  R  *  W  E  P  R  P  K :   Y  F  I  T  G  R  M  G  G  S  L  P  L  F  G  I  C  S  K  E   : A  R  A  T  G  S  N  T  K  K  P  *  T  R  Q  R  Q  D  A  T  D  K  R  R  Y  *  E  C  *  R  C  S  V  V  P  K  R  L  L  W  D  M  R  K  Y  L  K  *  R  G  T  I  N  T  V  P  S  S  T  R  *  I  Q  L  L  I  N  F  A  E  Q  R  L  I  F  A  F  I  I  C  Y  I  I  N  S  L  L  Y  Y  N  I  K  K  L  M  W  A  K  V  A  G  S  N  D  T  S  H  Q  C  Y  V  R  L  S  T  C  N  F  P  C  N  S  L  Y  H  Y  I  F  I  V  R  M  R  K  *  P  K  I  S  I  W  D  I  K  I  K  M  F  *  R  S  K  T  I  E  H  *  V  T  D  V  K  I  K  Y  M  L  F  V  Y   </second_frame>
            <third_frame>   E  Y  M  K  K  P  E  F  I  E  L  M  R  R  L  G  A  L  G  D  G  N  Q  D  Q   : S  T  L  S  P  D  E  W  E  V  A  Y  L  Y  L  A  F  V  L  R  K  :  R  G  Q  P  D  Q  T  R  R  N  P  R  R  D  K  G  K  M  Q  L  T  K  D  D  I  E  N  V  N  G  A  V  *  C  R  N  D  C  Y  G  T  *  G  S  I  *  N  E  E  E  Q  *  T  Q  S  P  L  Q  L  D  K  S  S  C  *  S  I  L  Q  N  K  D  *  F  S  P  L  S  F  V  T  S  S  T  H  C  C  T  T  T  *  K  S  *  C  G  Q  R  W  L  V  L  M  I  L  V  T  S  A  M  F  V  C  P  L  A  T  F  H  V  T  L  C  I  I  T  Y  L  *  *  E  *  E  N  S  Q  K  Y  Q  S  G  I  L  R  *  K  C  F  R  D  L  R  Q  L  N  T  E  *  L  M  S  R  S  N  I  C  C  L  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75254" stop="75009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKTILRMLTVQCSAETTVMGHEEVSEMKRNNKHSPLFNSINPAANQFCRTKTNFRLYHLLHHQLTVVLQHKKVDVGKGGWF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75826" stop="75751"/>
                    <exon start="75622" stop="75561"/>
                    <exon start="75315" stop="75217"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYMKKPEFIELMRRLGALGDGNQDQSTLSPDEWEVAYLYLAFVLRKRGQPDQTRRNPRRDKGKMQLTKDDIENVNGAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75133" stop="74912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQLLINFAEQRLIFAFIICYIINSLLYYNIKKLMWAKVAGSNDTSHQCYVRLSTCNFPCNSLYHYIFIVRMRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="76932" PGL_stop="77756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76932" e_stop="77756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="76932" e_stop="77756" e_length="825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76932" stop="77756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76933" stop="77589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302177" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATAACCCTATGTTGATTTTCAGGATTTAATAAGAGGATAACCTATGTTGATTTTCAGGATTTAATAAGAGGACAACCCTATGTTGATTTACAGGATTTAATAGGAGGAGGATAACATTCCAAGCATATAATACACAGATAATCTTTTGTAAGTCGTGTTAAGATGGGAATTCTCCACCTGTTGATATATGTACATAAACTATGTCTGATCAAAACTTAATAAATGAGTTTTGAGCCCCAAAGTAGTGTTTGGTTTCATTCACAGCACATGCAAAATCCATAAATAATAGAGTAAGAACAGTTGTTCAGTCTGCTAGAACTTGCAAATCATGGAGGCTAAAAGACAAATAAAAATCCTTCAATGTGCATGATTCTAAACAAGTAAAGCAAAAACTGAAAACCATACATGCCTACTAGCTATAAAACAAATAAATTATTCAAATGGAAGCGCTGAGATTTGTACTTTGAAACTAAAATCGACAAAGGAGCGCATACACACTTTAATCAATAACAATAATACTGAAGGACACAGCTAAGATATATAGGAAGGCATAAATCTGTACACACCTCCAGATGGAACTTGTATTTGATGCCAAAAGGATTTGAAGATTTGAATTTCTGCAACAATGGAAAATCTTAATATACAACTACTTATAGTAGTAACAACAGAAATCAGAAAATTGCTAGAAAATGATAACACAAGTTACCTTCTCTGAAAATTCTTCATCAAAACGTATCCAATAGACACTATTACCAAAGGCTAGCCCCTCAGCTGCACTTCCAAAGACAAACAGGAACCATATATCAACAAATCTTTAATCTGG</gDNA_template>
            <first_frame> G  *  P  Y  V  D  F  Q  D  L  I  R  G  *  P  M  L  I  F  R  I  *  *  E  D  N  P  M  L  I  Y  R  I  *  *  E  E  D  N  I  P  S  I  *  Y  T  D  N  L  L  *  V  V  L  R  W  E  F  S  T  C  *  Y  M  Y  I  N  Y  V  *  S  K  L  N  K  *  V  L  S  P  K  V  V  F  G  F  I  H  S  T  C  K  I  H  K  *  *  S  K  N  S  C  S  V  C  *  N  L  Q  I  M  E  A  K  R  Q  I  K  I  L  Q  C  A  *  F  *  T  S  K  A  K  T  E  N  H  T  C  L  L  A  I  K  Q  I  N  Y  S  N  G  S  A  E  I  C  T  L  K  L  K  S  T  K  E  R  I  H  T  L  I  N  N  N  N  T  E  G  H  S  *  D  I  *  E  G  I  N  L  Y  T  P  P  D  G  T  C  I  *  C  Q  K  D  L  K  I  *  I  S  A  T  M  E  N  L  N  I  Q  L  L  I  V  V  T  T  E  I  R  K  L  L  E  N  D  N  T  S  Y  L  L  *  K  F  F  I  K  T  Y  P  I  D  T  I  T  K  G  *  P  L  S  C  T  S  K  D  K  Q  E  P  Y  I  N  K  S  L  I  W </first_frame>
            <second_frame>  D  N  P  M  L  I  F  R  I  *  *  E  D  N  L  C  *  F  S  G  F  N  K  R  T  T  L  C  *  F  T  G  F  N  R  R  R  I  T  F  Q  A  Y  N  T  Q  I  I  F  C  K  S  C  *  D  G  N  S  P  P  V  D  I  C  T  *  T  M  S  D  Q  N  L  I  N  E  F  *  A  P  K  *  C  L  V  S  F  T  A  H  A  K  S  I  N  N  R  V  R  T  V  V  Q  S  A  R  T  C  K  S  W  R  L  K  D  K  *  K  S  F  N  V  H  D  S  K  Q  V  K  Q  K  L  K  T  I  H  A  Y  *  L  *  N  K  *  I  I  Q  M  E  A  L  R  F  V  L  *  N  *  N  R  Q  R  S  A  Y  T  L  *  S  I  T  I  I  L  K  D  T  A  K  I  Y  R  K  A  *  I  C  T  H  L  Q  M  E  L  V  F  D  A  K  R  I  *  R  F  E  F  L  Q  Q  W  K  I  L  I  Y  N  Y  L  *  *  *  Q  Q  K  S  E  N  C  *  K  M  I  T  Q  V  T  F  S  E  N  S  S  S  K  R  I  Q  *  T  L  L  P  K  A  S  P  S  A  A  L  P  K  T  N  R  N  H  I  S  T  N  L  *  S   </second_frame>
            <third_frame>   I  T  L  C  *  F  S  G  F  N  K  R  I  T  Y  V  D  F  Q  D  L  I  R  G  Q  P  Y  V  D  L  Q  D  L  I  G  G  G  *  H  S  K  H  I  I  H  R  *  S  F  V  S  R  V  K  M  G  I  L  H  L  L  I  Y  V  H  K  L  C  L  I  K  T  *  *  M  S  F  E  P  Q  S  S  V  W  F  H  S  Q  H  M  Q  N  P  *  I  I  E  *  E  Q  L  F  S  L  L  E  L  A  N  H  G  G  *  K  T  N  K  N  P  S  M  C  M  I  L  N  K  *  S  K  N  *  K  P  Y  M  P  T  S  Y  K  T  N  K  L  F  K  W  K  R  *  D  L  Y  F  E  T  K  I  D  K  G  A  H  T  H  F  N  Q  *  Q  *  Y  *  R  T  Q  L  R  Y  I  G  R  H  K  S  V  H  T  S  R  W  N  L  Y  L  M  P  K  G  F  E  D  L  N  F  C  N  N  G  K  S  *  Y  T  T  T  Y  S  S  N  N  R  N  Q  K  I  A  R  K  *  *  H  K  L  P  S  L  K  I  L  H  Q  N  V  S  N  R  H  Y  Y  Q  R  L  A  P  Q  L  H  F  Q  R  Q  T  G  T  I  Y  Q  Q  I  F  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026I24.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="82574" PGL_stop="78584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82574" e_stop="82361"/>
            <exon e_start="81529" e_stop="81240"/>
            <exon e_start="81167" e_stop="81099"/>
            <exon e_start="80983" e_stop="80912"/>
            <exon e_start="80079" e_stop="79978"/>
            <exon e_start="79696" e_stop="79666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.954" e_score="0.855"/>
          <exon-intron don_prob="0.802" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.841" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.855">
            <gDNA_exon_boundary e_start="82574" e_stop="82361" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.954">
            <gDNA_intron_boundary i_start="82360" i_stop="81530" i_length="831"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81529" e_stop="81240" e_length="290"/>
          </exon>
          <intron i_serial="2" don_prob="0.802" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81239" i_stop="81168" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81167" e_stop="81099" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.974">
            <gDNA_intron_boundary i_start="81098" i_stop="80984" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80983" e_stop="80912" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.841" acc_prob="0.989">
            <gDNA_intron_boundary i_start="80911" i_stop="80080" i_length="832"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="80079" e_stop="79978" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79977" i_stop="79697" i_length="281"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79696" e_stop="79666" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82574" stop="82361"/>
              <exon start="81529" stop="81240"/>
              <exon start="81167" stop="81099"/>
              <exon start="80983" stop="80912"/>
              <exon start="80079" stop="80011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82531" stop="82361"/>
              <exon start="81529" stop="81267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82480" stop="82361"/>
              <exon start="81529" stop="81240"/>
              <exon start="81167" stop="81099"/>
              <exon start="80983" stop="80912"/>
              <exon start="80079" stop="79978"/>
              <exon start="79696" stop="79666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302618" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTTAAGGTCGAGAAGAAAGGTGTCTTTGACAAATCAAATACTTTCCCTTCACTAATTCCTTCTTCTTCTCTCACTGTTTTATAGCTTAGTGTTGCAGATTTGTTCATAATCTATACTGATTGTGCTTCAAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAG : GGTAGTTTTTTAACTGCTAGGGGCGATGTATTATCCCATAAATAATTGAACTTCTGATGCTAAACTTTAGGAAGTTGTAACCTTTTTGGATAAAGAAGCCAGAAGTTGGTTTTCTATTGCGGTTTGATTAAAAGTTTGAACTGGTGTCAGGCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGG : ATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAG : GGTGGCGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATCGCCGATGGTTCA : ATAGAAGACTGCCGGACTCGTTACAATGGTGAGGCAGATCATCATCAGCGGCGCAAAAAGTTCTCATTTCCTGCCAGACTCCTGTGTGGAGATTGTTATGAG : GTTCGCTTGGATAGGGTTTTAGCAGATGATG</gDNA_template>
            <first_frame> G  L  R  S  R  R  K  V  S  L  T  N  Q  I  L  S  L  H  *  F  L  L  L  L  S  L  F  Y  S  L  V  L  Q  I  C  S  *  S  I  L  I  V  L  Q  I  M  K  R  S  Y  S  G  S  P  S  S  S  S  Y  G  P  P  Q  S  K  F  K  H  N  P  E   : G  *  F  F  N  C  *  G  R  C  I  I  P  *  I  I  E  L  L  M  L  N  F  R  K  L  *  P  F  W  I  K  K  P  E  V  G  F  L  L  R  F  D  *  K  F  E  L  V  S  G  D  T  H  F  L  E  D  E  S  T  K  I  F  A  R  K  V  A  D  H  Y  S  A  R  T  N  Q  T  L  E  E  R  E  A  S  P  I  I  H  L  K  K  L  N  N  W  :  I  K  S  V  L  I  Q  L  Y  T  K  R  G  D  A  V  L  D  L  A  C  G  K  :  G  G  D  L  I  K  W  D  K  A  K  I  G  Y  Y  V  G  I  D  I  A  D  G  S  :  I  E  D  C  R  T  R  Y  N  G  E  A  D  H  H  Q  R  R  K  K  F  S  F  P  A  R  L  L  C  G  D  C  Y  E  :  V  R  L  D  R  V  L  A  D  D  </first_frame>
            <second_frame>  G  *  G  R  E  E  R  C  L  *  Q  I  K  Y  F  P  F  T  N  S  F  F  F  S  H  C  F  I  A  *  C  C  R  F  V  H  N  L  Y  *  L  C  F  K  L  *  R  E  V  T  Q  D  L  H  L  R  V  L  M  D  L  H  N  P  N  L  S  I  T  Q  K  :  G  S  F  L  T  A  R  G  D  V  L  S  H  K  *  L  N  F  *  C  *  T  L  G  S  C  N  L  F  G  *  R  S  Q  K  L  V  F  Y  C  G  L  I  K  S  L  N  W  C  Q  A  T  L  I  F  W  K  M  R  V  Q  K  S  L  P  G  K  W  L  I  I  T  V  R  G  P  I  K  L  L  K  S  A  K  Q  V  L  S  S  I  *  R  N  L  I  I  G :   S  R  V  S  *  F  S  F  I  R  K  E  G  M  Q  F  L  I  L  L  V  G  R :   V  A  I  S  S  N  G  I  K  Q  R  L  D  I  T  L  V  L  I  S  P  M  V  Q :   *  K  T  A  G  L  V  T  M  V  R  Q  I  I  I  S  G  A  K  S  S  H  F  L  P  D  S  C  V  E  I  V  M  R :   F  A  W  I  G  F  *  Q  M  M </second_frame>
            <third_frame>   V  K  V  E  K  K  G  V  F  D  K  S  N  T  F  P  S  L  I  P  S  S  S  L  T  V  L  *  L  S  V  A  D  L  F  I  I  Y  T  D  C  A  S  N  Y  E  E  K  L  L  R  I  S  I  F  E  F  L  W  T  S  T  I  Q  I  *  A  *  P  R  R :   V  V  F  *  L  L  G  A  M  Y  Y  P  I  N  N  *  T  S  D  A  K  L  *  E  V  V  T  F  L  D  K  E  A  R  S  W  F  S  I  A  V  *  L  K  V  *  T  G  V  R  R  H  S  F  S  G  R  *  E  Y  K  N  L  C  Q  E  S  G  *  S  L  Q  C  E  D  Q  S  N  S  *  R  A  R  S  K  S  Y  H  P  F  K  E  T  *  *  L   : D  Q  E  C  L  D  S  A  L  Y  E  K  R  G  C  S  S  *  S  C  L  W  E   : G  W  R  S  H  Q  M  G  *  S  K  D  W  I  L  R  W  Y  *  Y  R  R  W  F   : N  R  R  L  P  D  S  L  Q  W  *  G  R  S  S  S  A  A  Q  K  V  L  I  S  C  Q  T  P  V  W  R  L  L  *   : G  S  L  G  *  G  F  S  R  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81398" stop="81240"/>
                    <exon start="81167" stop="81099"/>
                    <exon start="80983" stop="80912"/>
                    <exon start="80079" stop="79978"/>
                    <exon start="79696" stop="79667"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFELVSGDTHFLEDESTKIFARKVADHYSARTNQTLEEREASPIIHLKKLNNWIKSVLIQLYTKRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIADGSIEDCRTRYNGEADHHQRRKKFSFPARLLCGDCYEVRLDRVLADD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82573" e_stop="82361"/>
            <exon e_start="81379" e_stop="81240"/>
            <exon e_start="81167" e_stop="81099"/>
            <exon e_start="80983" e_stop="80912"/>
            <exon e_start="80079" e_stop="79978"/>
            <exon e_start="79696" e_stop="79640"/>
            <exon e_start="78784" e_stop="78658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.521" e_score="0.864"/>
          <exon-intron don_prob="0.802" acc_prob="0.000" e_score="0.993"/>
          <exon-intron don_prob="0.984" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.841" acc_prob="0.989" e_score="0.972"/>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="0.951"/>
          <exon-intron don_prob="0.995" acc_prob="0.963" e_score="0.930"/>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.864">
            <gDNA_exon_boundary e_start="82573" e_stop="82361" e_length="213"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.521">
            <gDNA_intron_boundary i_start="82360" i_stop="81380" i_length="981"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="81379" e_stop="81240" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.802" acc_prob="0.000">
            <gDNA_intron_boundary i_start="81239" i_stop="81168" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81167" e_stop="81099" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.974">
            <gDNA_intron_boundary i_start="81098" i_stop="80984" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="80983" e_stop="80912" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.841" acc_prob="0.989">
            <gDNA_intron_boundary i_start="80911" i_stop="80080" i_length="832"/>
          </intron>
          <exon e_serial="5" e_score="0.951">
            <gDNA_exon_boundary e_start="80079" e_stop="79978" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79977" i_stop="79697" i_length="281"/>
          </intron>
          <exon e_serial="6" e_score="0.930">
            <gDNA_exon_boundary e_start="79696" e_stop="79640" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.963">
            <gDNA_intron_boundary i_start="79639" i_stop="78785" i_length="855"/>
          </intron>
          <exon e_serial="7" e_score="0.921">
            <gDNA_exon_boundary e_start="78784" e_stop="78658" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82573" stop="82361"/>
              <exon start="81379" stop="81240"/>
              <exon start="81167" stop="81099"/>
              <exon start="80983" stop="80912"/>
              <exon start="80079" stop="80028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82521" stop="82361"/>
              <exon start="81379" stop="81240"/>
              <exon start="81167" stop="81099"/>
              <exon start="80983" stop="80912"/>
              <exon start="80079" stop="79978"/>
              <exon start="79696" stop="79640"/>
              <exon start="78784" stop="78658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460923" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTAAGGTCGAGAAGAAAGGTGTCTTTGACAAATCAAATACTTTCCCTTCACTAATTCCTTCTTCTTCTCTCACTGTTTTATAGCTTAGTGTTGCAGATTTGTTCATAATCTATACTGATTGTGCTTCAAATTATGAAGAGAAGTTACTCAGGATCTCCATCTTCGAGTTCTTATGGACCTCCACAATCCAAATTTAAGCATAACCCAGAAG : GCGACACTCATTTTCTGGAAGATGAGAGTACAAAAATCTTTGCCAGGAAAGTGGCTGATCATTACAGTGCGAGGACCAATCAAACTCTTGAAGAGCGCGAAGCAAGTCCTATCATCCATTTAAAGAAACTTAATAATTGG : ATCAAGAGTGTCTTGATTCAGCTTTATACGAAAAGAGGGGATGCAGTTCTTGATCTTGCTTGTGGGAAG : GGTGGCGATCTCATCAAATGGGATAAAGCAAAGATTGGATATTACGTTGGTATTGATATCGCCGATGGTTCA : ATAGAAGACTGCCGGACTCGTTACAATGGTGAGGCAGATCATCATCAGCGGCGCAAAAAGTTCTCATTTCCTGCCAGACTCCTGTGTGGAGATTGTTATGAG : GTTCGCTTGGATAGGGTTTTAGCAGATGATGCACCTTTTGATGTTTGTAGCTGTCAG : TTTGCTATGCATTATTCGTGGTCTACTGAGGCACGTGCACGACGTGCACTGGCCAACATCTCAGTTTTACTCCGACCCGGAGGAATATTTATTGGAACAATGCCAGATGCCAATGTCATCGTCAAGA</gDNA_template>
            <first_frame> G  *  G  R  E  E  R  C  L  *  Q  I  K  Y  F  P  F  T  N  S  F  F  F  S  H  C  F  I  A  *  C  C  R  F  V  H  N  L  Y  *  L  C  F  K  L  *  R  E  V  T  Q  D  L  H  L  R  V  L  M  D  L  H  N  P  N  L  S  I  T  Q  K  :  A  T  L  I  F  W  K  M  R  V  Q  K  S  L  P  G  K  W  L  I  I  T  V  R  G  P  I  K  L  L  K  S  A  K  Q  V  L  S  S  I  *  R  N  L  I  I  G :   S  R  V  S  *  F  S  F  I  R  K  E  G  M  Q  F  L  I  L  L  V  G  R :   V  A  I  S  S  N  G  I  K  Q  R  L  D  I  T  L  V  L  I  S  P  M  V  Q :   *  K  T  A  G  L  V  T  M  V  R  Q  I  I  I  S  G  A  K  S  S  H  F  L  P  D  S  C  V  E  I  V  M  R :   F  A  W  I  G  F  *  Q  M  M  H  L  L  M  F  V  A  V  S :   L  L  C  I  I  R  G  L  L  R  H  V  H  D  V  H  W  P  T  S  Q  F  Y  S  D  P  E  E  Y  L  L  E  Q  C  Q  M  P  M  S  S  S  R </first_frame>
            <second_frame>  V  K  V  E  K  K  G  V  F  D  K  S  N  T  F  P  S  L  I  P  S  S  S  L  T  V  L  *  L  S  V  A  D  L  F  I  I  Y  T  D  C  A  S  N  Y  E  E  K  L  L  R  I  S  I  F  E  F  L  W  T  S  T  I  Q  I  *  A  *  P  R  R :   R  H  S  F  S  G  R  *  E  Y  K  N  L  C  Q  E  S  G  *  S  L  Q  C  E  D  Q  S  N  S  *  R  A  R  S  K  S  Y  H  P  F  K  E  T  *  *  L   : D  Q  E  C  L  D  S  A  L  Y  E  K  R  G  C  S  S  *  S  C  L  W  E   : G  W  R  S  H  Q  M  G  *  S  K  D  W  I  L  R  W  Y  *  Y  R  R  W  F   : N  R  R  L  P  D  S  L  Q  W  *  G  R  S  S  S  A  A  Q  K  V  L  I  S  C  Q  T  P  V  W  R  L  L  *   : G  S  L  G  *  G  F  S  R  *  C  T  F  *  C  L  *  L  S   : V  C  Y  A  L  F  V  V  Y  *  G  T  C  T  T  C  T  G  Q  H  L  S  F  T  P  T  R  R  N  I  Y  W  N  N  A  R  C  Q  C  H  R  Q   </second_frame>
            <third_frame>   L  R  S  R  R  K  V  S  L  T  N  Q  I  L  S  L  H  *  F  L  L  L  L  S  L  F  Y  S  L  V  L  Q  I  C  S  *  S  I  L  I  V  L  Q  I  M  K  R  S  Y  S  G  S  P  S  S  S  S  Y  G  P  P  Q  S  K  F  K  H  N  P  E   : G  D  T  H  F  L  E  D  E  S  T  K  I  F  A  R  K  V  A  D  H  Y  S  A  R  T  N  Q  T  L  E  E  R  E  A  S  P  I  I  H  L  K  K  L  N  N  W  :  I  K  S  V  L  I  Q  L  Y  T  K  R  G  D  A  V  L  D  L  A  C  G  K  :  G  G  D  L  I  K  W  D  K  A  K  I  G  Y  Y  V  G  I  D  I  A  D  G  S  :  I  E  D  C  R  T  R  Y  N  G  E  A  D  H  H  Q  R  R  K  K  F  S  F  P  A  R  L  L  C  G  D  C  Y  E  :  V  R  L  D  R  V  L  A  D  D  A  P  F  D  V  C  S  C  Q  :  F  A  M  H  Y  S  W  S  T  E  A  R  A  R  R  A  L  A  N  I  S  V  L  L  R  P  G  G  I  F  I  G  T  M  P  D  A  N  V  I  V  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82463" stop="82361"/>
                    <exon start="81379" stop="81240"/>
                    <exon start="81167" stop="81099"/>
                    <exon start="80983" stop="80912"/>
                    <exon start="80079" stop="79978"/>
                    <exon start="79696" stop="79640"/>
                    <exon start="78784" stop="78659"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SILIVLQIMKRSYSGSPSSSSYGPPQSKFKHNPEGDTHFLEDESTKIFARKVADHYSARTNQTLEEREASPIIHLKKLNNWIKSVLIQLYTKRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIADGSIEDCRTRYNGEADHHQRRKKFSFPARLLCGDCYEVRLDRVLADDAPFDVCSCQFAMHYSWSTEARARRALANISVLLRPGGIFIGTMPDANVIVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="79411" e_stop="78584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="79411" e_stop="78584" e_length="828"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79411" stop="78584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCTAGCCTATAGAGGTACATGCTTATATGAATTGAATCACTTTTATATAACTGCATCTCTTTCTATGAGCATTATGAGGTGTTTTGGATATGTTGATGCCCTCGTAAAATATCTCATCTCAAGCTTTCGTGTTTTTGGTTCCTGGCTATGTTAAATGTGTCATTTGTCCTATTTTAGTTTTTGTCCAGCTTTTACTTTCTATTTTGCCAATGAAAACTTGAAAATTCATTAGTGTGTTCAGAAGCTTCTCCAAACTAGCTCACTGAAAAAGGTGTATAATCCACATCTTTCTTAAATTTTGAAAAAAACTGTAAAAACTGAAGTAGAGGTTTATGAAAGATGTTTGTACAGTGTCCTCCTAATTGGATGCCTCTGCCTAGTATCTGGAGAAGCGACAGCCCTTTATCCAGAATTTATGTTTGTCCTGGGTGGCCTCTTACAGATTCTAAGCTATGAAAAATTGAAATTTGCAGTTTGCTATGCATTATTCGTGGTCTACTGAGGCACGTGCACGACGTGCACTGGCCAACATCTCAGTTTTACTCCGACCCGGAGGAATATTTATTGGAACAATGCCAGATGCCAATGTCATCGTCAAGAAGTATAGAGAAGGTTCAACTTTACTCAATTCTGCCCTGTTTGTCCCTGTTGAATCTATAAATGTTATGACTCTG</gDNA_template>
            <first_frame> P  I  E  V  H  A  Y  M  N  *  I  T  F  I  *  L  H  L  F  L  *  A  L  *  G  V  L  D  M  L  M  P  S  *  N  I  S  S  Q  A  F  V  F  L  V  P  G  Y  V  K  C  V  *  P  I  E  V  H  A  Y  M  N  *  I  T  F  I  *  L  H  L  F  L  *  A  L  *  G  V  L  D  M  L  M  P  S  *  N  I  S  S  Q  A  F  V  F  L  V  P  G  Y  V  K  C  V  I  C  P  I  L  V  F  V  Q  L  L  L  S  I  L  P  M  K  T  *  K  F  I  S  V  F  R  S  F  S  K  L  A  H  *  K  R  C  I  I  H  I  F  L  K  F  *  K  K  L  *  K  L  K  *  R  F  M  K  D  V  C  T  V  S  S  *  L  D  A  S  A  *  Y  L  E  K  R  Q  P  F  I  Q  N  L  C  L  S  W  V  A  S  Y  R  F  *  A  M  K  N  *  N  L  Q  F  A  M  H  Y  S  W  S  T  E  A  R  A  R  R  A  L  A  N  I  S  V  L  L  R  P  G  G  I  F  I  G  T  M  P  D  A  N  V  I  V  K  K  Y  R  E  G  S  T  L  L  N  S  A  L  F  V  P  V  E  S  I  N  V  M  T  L </first_frame>
            <second_frame>  L  *  R  Y  M  L  I  *  I  E  S  L  L  Y  N  C  I  S  F  Y  E  H  Y  E  V  F  W  I  C  *  C  P  R  K  I  S  H  L  K  L  S  C  F  W  F  L  A  M  L  N  V  S  S  L  *  R  Y  M  L  I  *  I  E  S  L  L  Y  N  C  I  S  F  Y  E  H  Y  E  V  F  W  I  C  *  C  P  R  K  I  S  H  L  K  L  S  C  F  W  F  L  A  M  L  N  V  S  F  V  L  F  *  F  L  S  S  F  Y  F  L  F  C  Q  *  K  L  E  N  S  L  V  C  S  E  A  S  P  N  *  L  T  E  K  G  V  *  S  T  S  F  L  N  F  E  K  N  C  K  N  *  S  R  G  L  *  K  M  F  V  Q  C  P  P  N  W  M  P  L  P  S  I  W  R  S  D  S  P  L  S  R  I  Y  V  C  P  G  W  P  L  T  D  S  K  L  *  K  I  E  I  C  S  L  L  C  I  I  R  G  L  L  R  H  V  H  D  V  H  W  P  T  S  Q  F  Y  S  D  P  E  E  Y  L  L  E  Q  C  Q  M  P  M  S  S  S  R  S  I  E  K  V  Q  L  Y  S  I  L  P  C  L  S  L  L  N  L  *  M  L  *  L   </second_frame>
            <third_frame>   Y  R  G  T  C  L  Y  E  L  N  H  F  Y  I  T  A  S  L  S  M  S  I  M  R  C  F  G  Y  V  D  A  L  V  K  Y  L  I  S  S  F  R  V  F  G  S  W  L  C  *  M  C  L  A  Y  R  G  T  C  L  Y  E  L  N  H  F  Y  I  T  A  S  L  S  M  S  I  M  R  C  F  G  Y  V  D  A  L  V  K  Y  L  I  S  S  F  R  V  F  G  S  W  L  C  *  M  C  H  L  S  Y  F  S  F  C  P  A  F  T  F  Y  F  A  N  E  N  L  K  I  H  *  C  V  Q  K  L  L  Q  T  S  S  L  K  K  V  Y  N  P  H  L  S  *  I  L  K  K  T  V  K  T  E  V  E  V  Y  E  R  C  L  Y  S  V  L  L  I  G  C  L  C  L  V  S  G  E  A  T  A  L  Y  P  E  F  M  F  V  L  G  G  L  L  Q  I  L  S  Y  E  K  L  K  F  A  V  C  Y  A  L  F  V  V  Y  *  G  T  C  T  T  C  T  G  Q  H  L  S  F  T  P  T  R  R  N  I  Y  W  N  N  A  R  C  Q  C  H  R  Q  E  V  *  R  R  F  N  F  T  Q  F  C  P  V  C  P  C  *  I  Y  K  C  Y  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78793" stop="78584"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLQFAMHYSWSTEARARRALANISVLLRPGGIFIGTMPDANVIVKKYREGSTLLNSALFVPVESINVMTL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78962" stop="78756"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILKKTVKTEVEVYERCLYSVLLIGCLCLVSGEATALYPEFMFVLGGLLQILSYEKLKFAVCYALFVVY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78801" stop="78598"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIEICSLLCIIRGLLRHVHDVHWPTSQFYSDPEEYLLEQCQMPMSSSRSIEKVQLYSILPCLSLLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="90932" PGL_stop="84382"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90932" e_stop="90412"/>
            <exon e_start="90328" e_stop="90243"/>
            <exon e_start="88866" e_stop="88751"/>
            <exon e_start="88630" e_stop="88520"/>
            <exon e_start="88129" e_stop="88031"/>
            <exon e_start="87915" e_stop="87793"/>
            <exon e_start="86687" e_stop="86625"/>
            <exon e_start="86520" e_stop="86456"/>
            <exon e_start="86348" e_stop="86239"/>
            <exon e_start="86146" e_stop="86032"/>
            <exon e_start="85924" e_stop="85859"/>
            <exon e_start="85196" e_stop="85086"/>
            <exon e_start="84996" e_stop="84930"/>
            <exon e_start="84848" e_stop="84382"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.553" acc_prob="0.996" e_score="0.982"/>
          <exon-intron don_prob="0.909" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.606" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.801" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.959" e_score="0.991"/>
          <exon-intron don_prob="0.695" acc_prob="0.956" e_score="0.983"/>
          <exon-intron don_prob="0.993" acc_prob="0.851" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.919" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="90932" e_stop="90412" e_length="521"/>
          </exon>
          <intron i_serial="1" don_prob="0.553" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90411" i_stop="90329" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90328" e_stop="90243" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.909" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90242" i_stop="88867" i_length="1376"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88866" e_stop="88751" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.606">
            <gDNA_intron_boundary i_start="88750" i_stop="88631" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88630" e_stop="88520" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.838">
            <gDNA_intron_boundary i_start="88519" i_stop="88130" i_length="390"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88129" e_stop="88031" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="88030" i_stop="87916" i_length="115"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87915" e_stop="87793" e_length="123"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="87792" i_stop="86688" i_length="1105"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="86687" e_stop="86625" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="86624" i_stop="86521" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="86520" e_stop="86456" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.801" acc_prob="0.981">
            <gDNA_intron_boundary i_start="86455" i_stop="86349" i_length="107"/>
          </intron>
          <exon e_serial="9" e_score="0.991">
            <gDNA_exon_boundary e_start="86348" e_stop="86239" e_length="110"/>
          </exon>
          <intron i_serial="9" don_prob="0.936" acc_prob="0.959">
            <gDNA_intron_boundary i_start="86238" i_stop="86147" i_length="92"/>
          </intron>
          <exon e_serial="10" e_score="0.983">
            <gDNA_exon_boundary e_start="86146" e_stop="86032" e_length="115"/>
          </exon>
          <intron i_serial="10" don_prob="0.695" acc_prob="0.956">
            <gDNA_intron_boundary i_start="86031" i_stop="85925" i_length="107"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="85924" e_stop="85859" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.993" acc_prob="0.851">
            <gDNA_intron_boundary i_start="85858" i_stop="85197" i_length="662"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="85196" e_stop="85086" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.855" acc_prob="0.899">
            <gDNA_intron_boundary i_start="85085" i_stop="84997" i_length="89"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="84996" e_stop="84930" e_length="67"/>
          </exon>
          <intron i_serial="13" don_prob="0.843" acc_prob="0.919">
            <gDNA_intron_boundary i_start="84929" i_stop="84849" i_length="81"/>
          </intron>
          <exon e_serial="14" e_score="0.994">
            <gDNA_exon_boundary e_start="84848" e_stop="84382" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90932" stop="90615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90919" stop="90412"/>
              <exon start="90328" stop="90243"/>
              <exon start="88866" stop="88760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90914" stop="90412"/>
              <exon start="90328" stop="90281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90896" stop="90412"/>
              <exon start="90328" stop="90243"/>
              <exon start="88866" stop="88766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90886" stop="90412"/>
              <exon start="90328" stop="90289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90862" stop="90412"/>
              <exon start="90328" stop="90243"/>
              <exon start="88866" stop="88751"/>
              <exon start="88630" stop="88613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90714" stop="90412"/>
              <exon start="90328" stop="90243"/>
              <exon start="88866" stop="88751"/>
              <exon start="88630" stop="88520"/>
              <exon start="88129" stop="88103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90546" stop="90412"/>
              <exon start="90328" stop="90243"/>
              <exon start="88866" stop="88751"/>
              <exon start="88630" stop="88520"/>
              <exon start="88129" stop="88031"/>
              <exon start="87915" stop="87793"/>
              <exon start="86687" stop="86625"/>
              <exon start="86520" stop="86456"/>
              <exon start="86348" stop="86300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90499" stop="90412"/>
              <exon start="90328" stop="90243"/>
              <exon start="88866" stop="88751"/>
              <exon start="88630" stop="88552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88118" stop="88031"/>
              <exon start="87915" stop="87793"/>
              <exon start="86687" stop="86625"/>
              <exon start="86520" stop="86456"/>
              <exon start="86348" stop="86239"/>
              <exon start="86146" stop="86032"/>
              <exon start="85924" stop="85859"/>
              <exon start="85196" stop="85152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88118" stop="88031"/>
              <exon start="87915" stop="87793"/>
              <exon start="86687" stop="86625"/>
              <exon start="86520" stop="86456"/>
              <exon start="86348" stop="86239"/>
              <exon start="86146" stop="86032"/>
              <exon start="85924" stop="85868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86085" stop="86032"/>
              <exon start="85924" stop="85859"/>
              <exon start="85196" stop="85086"/>
              <exon start="84996" stop="84930"/>
              <exon start="84848" stop="84416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577670" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85102" stop="85086"/>
              <exon start="84996" stop="84930"/>
              <exon start="84848" stop="84382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334202" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAATCCGCCCGTCCTGTTTTTCCCCTTTCTTTTCGAAAACCCAGATCTGAAAAAGGGTCTCTGTTCATCAAATTTCAAACCCAAACCCTAAATTCTTCTCATTCACACGTTATTCCGATTCGAATCAACCTTCAAAATTGATCCGAATCGAGAAATCTTCACACAACAATGGGGGATTTCAATCTCGCCTTGGTTATTGTAGCCATTGTAGTATGTATTCTCGTTTTCGTAGTCAATGTCTATCTTCTCATCAATTATCAGCACCCTGATGATGCAAATCAAGCCTATTTCCCCAAATTTGTTGTCGTTTTTGGCTTATCAGTCGCTGCCATTTCTATTCTCATGTTACCGGCCGATGTTGCTAATCGGCAGGCATGTCAACACGCGATTTATAATGGAGCGTGTAATCTCACGCTCCCAATGAAGCAACTATGGCTTGCTATCTACATTGTTGATGCTATTCTCGTTTTCTTCGTCATTCCTTTTGCTATGTTTTATTACGAAGGCGACCAGGATAA : GACTATTGCCAAAAGGCTTAAAAGTGCAATGTGTTGGGTGTTGGTCACAGCAATCGTGTGTGCTTTGTTGCTTGGAATTTTATATG : GGCTCGCCGGAAAGGCAGACTTCACTGTAAGACACCTGTCATCAGCCACCACTTCATTTCCAAATTCATTTGATTTTAACAATGGTCAACAATGTATTGGAAACGGTGCCCGTCAG : TGTTCTGCATACTCTGCTAGTGCTTCCTCTGAGACAACCTGGACTATGCGTGCTACTTTTCCTGAATATGTCGTTGCTCTGGCTACTATTGTTGGATCTGTACTTTTCACG : ATTTTTGGTGGTGTTGGCATTGCTTGTCTCCCGTTGGGACTTATATTTTCGTTCATCAGGCGTCCAAAGGCTGTTATTACACGGTCACAGTATATCAAG : GAAGCTACCGAGCTTGGTAAAAGAGCGAAAGAATTGAAGAAAGCAACTGATGCACTTCATCAAGAAGAAAGGAGCGGGAGTAAGGGAAGAAAATGGCGGAAGAATGTGAAGGCAGTCGAAAAG : GAGGTGCTTCTTCTTGAAGACGATGTCAAGGCGCTAGAGGAAATGTATCCTCAAGGTGAAAAG : GCTGAGACTGCTTGGGCAATGACAGTTCTAGGTTATTTGGCAAAACTCATCCTAGGTGTTTTAGG : GCTGATTGTCTCTGTAGCTTGGGTTGCCCATATCGTGATATATCTTCTGATTGATCCTCCACTTTCTTCTTTCCTTAATGAGGTTTTCATCAAACTAGATGATATTTGGG : GTCTCTTGGGCACTGCAGCTTTTGCATTTTTTTGCTTCTACCTTCTGCTTGCTGTGATTGCCGGAGCTATGATGATTGGCTTGAGATTAGTTTTTGTTACGATTCACCCAATGAA : GTGGGGAGCTACGCTCATGAACTCCTTTCTTTTCAATGTGGGCCTTATTCTTCTTTGCTCCATCAG : TGTCATTCAGTTCTGCGCCACGGCCTTTGCATACTATGCTCAAGCCACTGCAGCTCAAGAAATATTTGGTCACAATCTGCAATCTCTTCGTGGAATTAAGTATCTATACAA : GTACAACGTGTTTCAAATTGGATTCATTGTTTTAGCTGGTCTGACATTTGTTTACTATGCTGCCTTT : GGGTGGAGAAGGAAAAAGCCTAGTGGGAGGTTCCAGCTCTCCAGTTAAAGGTTTTGATTGGATAGCAGTGCACGTATCTGACCGTATTTGAGACTTACTCTGGTCTATCACTAATGTTGAGGCTTTGAACTGTGGTGTATGTTGCCTAGTTTTGTTTCATATTATTGGAGGAGGCAACACCACTAAATTTGATTTCTACAGTGGAAGTTGGATGTTGGCGACTCTGTACTACTGCTGCTGCTGCTTGCCACTGTTCCTGCTGCTGTTAATTTAGTTTTTTCCTTAATTCCACCTTCTGTATGTATCATTTGTTTGGTAATGTTTAATCATTTGTTTGGGCATGTCGTCATCTAAATGCTTGGTTTGAGATTTGTCCTTGATGTATCATATAGTCATTATATACCAAAATTTCTTGGATGCTTGTATATTTACTGTGAACTCTTTTATATACGTTTCGAGCCTAGGAG</gDNA_template>
            <first_frame> S  K  S  A  R  P  V  F  P  L  S  F  R  K  P  R  S  E  K  G  S  L  F  I  K  F  Q  T  Q  T  L  N  S  S  H  S  H  V  I  P  I  R  I  N  L  Q  N  *  S  E  S  R  N  L  H  T  T  M  G  D  F  N  L  A  L  V  I  V  A  I  V  V  C  I  L  V  F  V  V  N  V  Y  L  L  I  N  Y  Q  H  P  D  D  A  N  Q  A  Y  F  P  K  F  V  V  V  F  G  L  S  V  A  A  I  S  I  L  M  L  P  A  D  V  A  N  R  Q  A  C  Q  H  A  I  Y  N  G  A  C  N  L  T  L  P  M  K  Q  L  W  L  A  I  Y  I  V  D  A  I  L  V  F  F  V  I  P  F  A  M  F  Y  Y  E  G  D  Q  D  K :   T  I  A  K  R  L  K  S  A  M  C  W  V  L  V  T  A  I  V  C  A  L  L  L  G  I  L  Y   : G  L  A  G  K  A  D  F  T  V  R  H  L  S  S  A  T  T  S  F  P  N  S  F  D  F  N  N  G  Q  Q  C  I  G  N  G  A  R  Q  :  C  S  A  Y  S  A  S  A  S  S  E  T  T  W  T  M  R  A  T  F  P  E  Y  V  V  A  L  A  T  I  V  G  S  V  L  F  T  :  I  F  G  G  V  G  I  A  C  L  P  L  G  L  I  F  S  F  I  R  R  P  K  A  V  I  T  R  S  Q  Y  I  K  :  E  A  T  E  L  G  K  R  A  K  E  L  K  K  A  T  D  A  L  H  Q  E  E  R  S  G  S  K  G  R  K  W  R  K  N  V  K  A  V  E  K  :  E  V  L  L  L  E  D  D  V  K  A  L  E  E  M  Y  P  Q  G  E  K  :  A  E  T  A  W  A  M  T  V  L  G  Y  L  A  K  L  I  L  G  V  L  G :   L  I  V  S  V  A  W  V  A  H  I  V  I  Y  L  L  I  D  P  P  L  S  S  F  L  N  E  V  F  I  K  L  D  D  I  W   : G  L  L  G  T  A  A  F  A  F  F  C  F  Y  L  L  L  A  V  I  A  G  A  M  M  I  G  L  R  L  V  F  V  T  I  H  P  M  K :   W  G  A  T  L  M  N  S  F  L  F  N  V  G  L  I  L  L  C  S  I  S :   V  I  Q  F  C  A  T  A  F  A  Y  Y  A  Q  A  T  A  A  Q  E  I  F  G  H  N  L  Q  S  L  R  G  I  K  Y  L  Y  K :   Y  N  V  F  Q  I  G  F  I  V  L  A  G  L  T  F  V  Y  Y  A  A  F  :  G  W  R  R  K  K  P  S  G  R  F  Q  L  S  S  *  R  F  *  L  D  S  S  A  R  I  *  P  Y  L  R  L  T  L  V  Y  H  *  C  *  G  F  E  L  W  C  M  L  P  S  F  V  S  Y  Y  W  R  R  Q  H  H  *  I  *  F  L  Q  W  K  L  D  V  G  D  S  V  L  L  L  L  L  L  A  T  V  P  A  A  V  N  L  V  F  S  L  I  P  P  S  V  C  I  I  C  L  V  M  F  N  H  L  F  G  H  V  V  I  *  M  L  G  L  R  F  V  L  D  V  S  Y  S  H  Y  I  P  K  F  L  G  C  L  Y  I  Y  C  E  L  F  Y  I  R  F  E  P  R   </first_frame>
            <second_frame>  A  N  P  P  V  L  F  F  P  F  L  F  E  N  P  D  L  K  K  G  L  C  S  S  N  F  K  P  K  P  *  I  L  L  I  H  T  L  F  R  F  E  S  T  F  K  I  D  P  N  R  E  I  F  T  Q  Q  W  G  I  S  I  S  P  W  L  L  *  P  L  *  Y  V  F  S  F  S  *  S  M  S  I  F  S  S  I  I  S  T  L  M  M  Q  I  K  P  I  S  P  N  L  L  S  F  L  A  Y  Q  S  L  P  F  L  F  S  C  Y  R  P  M  L  L  I  G  R  H  V  N  T  R  F  I  M  E  R  V  I  S  R  S  Q  *  S  N  Y  G  L  L  S  T  L  L  M  L  F  S  F  S  S  S  F  L  L  L  C  F  I  T  K  A  T  R  I   : R  L  L  P  K  G  L  K  V  Q  C  V  G  C  W  S  Q  Q  S  C  V  L  C  C  L  E  F  Y  M  :  G  S  P  E  R  Q  T  S  L  *  D  T  C  H  Q  P  P  L  H  F  Q  I  H  L  I  L  T  M  V  N  N  V  L  E  T  V  P  V  S :   V  L  H  T  L  L  V  L  P  L  R  Q  P  G  L  C  V  L  L  F  L  N  M  S  L  L  W  L  L  L  L  D  L  Y  F  S  R :   F  L  V  V  L  A  L  L  V  S  R  W  D  L  Y  F  R  S  S  G  V  Q  R  L  L  L  H  G  H  S  I  S  R :   K  L  P  S  L  V  K  E  R  K  N  *  R  K  Q  L  M  H  F  I  K  K  K  G  A  G  V  R  E  E  N  G  G  R  M  *  R  Q  S  K  R :   R  C  F  F  L  K  T  M  S  R  R  *  R  K  C  I  L  K  V  K  R :   L  R  L  L  G  Q  *  Q  F  *  V  I  W  Q  N  S  S  *  V  F  *   : G  *  L  S  L  *  L  G  L  P  I  S  *  Y  I  F  *  L  I  L  H  F  L  L  S  L  M  R  F  S  S  N  *  M  I  F  G  :  V  S  W  A  L  Q  L  L  H  F  F  A  S  T  F  C  L  L  *  L  P  E  L  *  *  L  A  *  D  *  F  L  L  R  F  T  Q  *   : S  G  E  L  R  S  *  T  P  F  F  S  M  W  A  L  F  F  F  A  P  S   : V  S  F  S  S  A  P  R  P  L  H  T  M  L  K  P  L  Q  L  K  K  Y  L  V  T  I  C  N  L  F  V  E  L  S  I  Y  T   : S  T  T  C  F  K  L  D  S  L  F  *  L  V  *  H  L  F  T  M  L  P  L :   G  G  E  G  K  S  L  V  G  G  S  S  S  P  V  K  G  F  D  W  I  A  V  H  V  S  D  R  I  *  D  L  L  W  S  I  T  N  V  E  A  L  N  C  G  V  C  C  L  V  L  F  H  I  I  G  G  G  N  T  T  K  F  D  F  Y  S  G  S  W  M  L  A  T  L  Y  Y  C  C  C  C  L  P  L  F  L  L  L  L  I  *  F  F  P  *  F  H  L  L  Y  V  S  F  V  W  *  C  L  I  I  C  L  G  M  S  S  S  K  C  L  V  *  D  L  S  L  M  Y  H  I  V  I  I  Y  Q  N  F  L  D  A  C  I  F  T  V  N  S  F  I  Y  V  S  S  L  G  </second_frame>
            <third_frame>   Q  I  R  P  S  C  F  S  P  F  F  S  K  T  Q  I  *  K  R  V  S  V  H  Q  I  S  N  P  N  P  K  F  F  S  F  T  R  Y  S  D  S  N  Q  P  S  K  L  I  R  I  E  K  S  S  H  N  N  G  G  F  Q  S  R  L  G  Y  C  S  H  C  S  M  Y  S  R  F  R  S  Q  C  L  S  S  H  Q  L  S  A  P  *  *  C  K  S  S  L  F  P  Q  I  C  C  R  F  W  L  I  S  R  C  H  F  Y  S  H  V  T  G  R  C  C  *  S  A  G  M  S  T  R  D  L  *  W  S  V  *  S  H  A  P  N  E  A  T  M  A  C  Y  L  H  C  *  C  Y  S  R  F  L  R  H  S  F  C  Y  V  L  L  R  R  R  P  G  *  :  D  Y  C  Q  K  A  *  K  C  N  V  L  G  V  G  H  S  N  R  V  C  F  V  A  W  N  F  I  W :   A  R  R  K  G  R  L  H  C  K  T  P  V  I  S  H  H  F  I  S  K  F  I  *  F  *  Q  W  S  T  M  Y  W  K  R  C  P  S   : V  F  C  I  L  C  *  C  F  L  *  D  N  L  D  Y  A  C  Y  F  S  *  I  C  R  C  S  G  Y  Y  C  W  I  C  T  F  H   : D  F  W  W  C  W  H  C  L  S  P  V  G  T  Y  I  F  V  H  Q  A  S  K  G  C  Y  Y  T  V  T  V  Y  Q   : G  S  Y  R  A  W  *  K  S  E  R  I  E  E  S  N  *  C  T  S  S  R  R  K  E  R  E  *  G  K  K  M  A  E  E  C  E  G  S  R  K   : G  G  A  S  S  *  R  R  C  Q  G  A  R  G  N  V  S  S  R  *  K   : G  *  D  C  L  G  N  D  S  S  R  L  F  G  K  T  H  P  R  C  F  R  :  A  D  C  L  C  S  L  G  C  P  Y  R  D  I  S  S  D  *  S  S  T  F  F  F  P  *  *  G  F  H  Q  T  R  *  Y  L  G :   S  L  G  H  C  S  F  C  I  F  L  L  L  P  S  A  C  C  D  C  R  S  Y  D  D  W  L  E  I  S  F  C  Y  D  S  P  N  E  :  V  G  S  Y  A  H  E  L  L  S  F  Q  C  G  P  Y  S  S  L  L  H  Q  :  C  H  S  V  L  R  H  G  L  C  I  L  C  S  S  H  C  S  S  R  N  I  W  S  Q  S  A  I  S  S  W  N  *  V  S  I  Q  :  V  Q  R  V  S  N  W  I  H  C  F  S  W  S  D  I  C  L  L  C  C  L   : W  V  E  K  E  K  A  *  W  E  V  P  A  L  Q  L  K  V  L  I  G  *  Q  C  T  Y  L  T  V  F  E  T  Y  S  G  L  S  L  M  L  R  L  *  T  V  V  Y  V  A  *  F  C  F  I  L  L  E  E  A  T  P  L  N  L  I  S  T  V  E  V  G  C  W  R  L  C  T  T  A  A  A  A  C  H  C  S  C  C  C  *  F  S  F  F  L  N  S  T  F  C  M  Y  H  L  F  G  N  V  *  S  F  V  W  A  C  R  H  L  N  A  W  F  E  I  C  P  *  C  I  I  *  S  L  Y  T  K  I  S  W  M  L  V  Y  L  L  *  T  L  L  Y  T  F  R  A  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90788" stop="90412"/>
                    <exon start="90328" stop="90243"/>
                    <exon start="88866" stop="88751"/>
                    <exon start="88630" stop="88520"/>
                    <exon start="88129" stop="88031"/>
                    <exon start="87915" stop="87793"/>
                    <exon start="86687" stop="86625"/>
                    <exon start="86520" stop="86456"/>
                    <exon start="86348" stop="86239"/>
                    <exon start="86146" stop="86032"/>
                    <exon start="85924" stop="85859"/>
                    <exon start="85196" stop="85086"/>
                    <exon start="84996" stop="84930"/>
                    <exon start="84848" stop="84801"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1554</number_coding_nucleotides>
                  <number_encoded_amino_acids>518</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SESRNLHTTMGDFNLALVIVAIVVCILVFVVNVYLLINYQHPDDANQAYFPKFVVVFGLSVAAISILMLPADVANRQACQHAIYNGACNLTLPMKQLWLAIYIVDAILVFFVIPFAMFYYEGDQDKTIAKRLKSAMCWVLVTAIVCALLLGILYGLAGKADFTVRHLSSATTSFPNSFDFNNGQQCIGNGARQCSAYSASASSETTWTMRATFPEYVVALATIVGSVLFTIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKRAKELKKATDALHQEERSGSKGRKWRKNVKAVEKEVLLLEDDVKALEEMYPQGEKAETAWAMTVLGYLAKLILGVLGLIVSVAWVAHIVIYLLIDPPLSSFLNEVFIKLDDIWGLLGTAAFAFFCFYLLLAVIAGAMMIGLRLVFVTIHPMKWGATLMNSFLFNVGLILLCSISVIQFCATAFAYYAQATAAQEIFGHNLQSLRGIKYLYKYNVFQIGFIVLAGLTFVYYAAFGWRRKKPSGRFQLSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="96309" PGL_stop="98757"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96309" e_stop="96681"/>
            <exon e_start="98364" e_stop="98434"/>
            <exon e_start="98522" e_stop="98647"/>
            <exon e_start="98732" e_stop="98757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.682" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.974" e_score="0.930"/>
          <exon-intron don_prob="0.000" acc_prob="0.940" e_score="0.849"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96309" e_stop="96681" e_length="373"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.682">
            <gDNA_intron_boundary i_start="96682" i_stop="98363" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="0.930">
            <gDNA_exon_boundary e_start="98364" e_stop="98434" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="0.974">
            <gDNA_intron_boundary i_start="98435" i_stop="98521" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.849">
            <gDNA_exon_boundary e_start="98522" e_stop="98647" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="98648" i_stop="98731" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="98732" e_stop="98757" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96309" stop="96681"/>
              <exon start="98364" stop="98434"/>
              <exon start="98522" stop="98647"/>
              <exon start="98732" stop="98757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGCCACGTTCAGTTCAATCACGGACTCTTCGCATCACTTTAAAATTTTAAATTTATTTCTTTCCACAATTTTCTCCAAAATCACAATTTTTACATCTTCTTCAGAATGGAGGAATCAGATTGGAATCAGTCATTTTCGTCGGAGATTAGGGATGAGCAATTTACCGGTGATGTATCGATATCGCGACACGAGGAGGAGGTACCAGTGATTGACGATGATGATCGGCGGCCTCCGTTGCCGTTTCCTGAGAGGAATAATGTTTTTCACAATGCACCTTATTTTCCGGCGACTGACAATGAGGAAGTTGTGCGGTTAGACAGAGATGATACATGTTCTTACATTGTAGTTATTCTCACTTTCTGGCTCTTCG : GTAATTTGCAGCTTGGACCAAATTCCTCAATCCTGATAAAACCTAATTCCTTATTTGTGAAAAATATAAAG : GTGGAAGAGATGGATGATGCTAACAATAGACCAACGGTGTATGGGTTCTATGAAAATCCATCTCTTGATGTTCTTGCAACTTCTTCTGAAGCTTACATAACCTCTCTTCCTGCAAACACTAATAAG : CAATGGATATATTACTTGAATCAAGG</gDNA_template>
            <first_frame> *  S  H  V  Q  F  N  H  G  L  F  A  S  L  *  N  F  K  F  I  S  F  H  N  F  L  Q  N  H  N  F  Y  I  F  F  R  M  E  E  S  D  W  N  Q  S  F  S  S  E  I  R  D  E  Q  F  T  G  D  V  S  I  S  R  H  E  E  E  V  P  V  I  D  D  D  D  R  R  P  P  L  P  F  P  E  R  N  N  V  F  H  N  A  P  Y  F  P  A  T  D  N  E  E  V  V  R  L  D  R  D  D  T  C  S  Y  I  V  V  I  L  T  F  W  L  F   : G  N  L  Q  L  G  P  N  S  S  I  L  I  K  P  N  S  L  F  V  K  N  I  K  :  V  E  E  M  D  D  A  N  N  R  P  T  V  Y  G  F  Y  E  N  P  S  L  D  V  L  A  T  S  S  E  A  Y  I  T  S  L  P  A  N  T  N  K  :  Q  W  I  Y  Y  L  N  Q   </first_frame>
            <second_frame>  E  A  T  F  S  S  I  T  D  S  S  H  H  F  K  I  L  N  L  F  L  S  T  I  F  S  K  I  T  I  F  T  S  S  S  E  W  R  N  Q  I  G  I  S  H  F  R  R  R  L  G  M  S  N  L  P  V  M  Y  R  Y  R  D  T  R  R  R  Y  Q  *  L  T  M  M  I  G  G  L  R  C  R  F  L  R  G  I  M  F  F  T  M  H  L  I  F  R  R  L  T  M  R  K  L  C  G  *  T  E  M  I  H  V  L  T  L  *  L  F  S  L  S  G  S  S  :  V  I  C  S  L  D  Q  I  P  Q  S  *  *  N  L  I  P  Y  L  *  K  I  *  R :   W  K  R  W  M  M  L  T  I  D  Q  R  C  M  G  S  M  K  I  H  L  L  M  F  L  Q  L  L  L  K  L  T  *  P  L  F  L  Q  T  L  I  S :   N  G  Y  I  T  *  I  K  </second_frame>
            <third_frame>   K  P  R  S  V  Q  S  R  T  L  R  I  T  L  K  F  *  I  Y  F  F  P  Q  F  S  P  K  S  Q  F  L  H  L  L  Q  N  G  G  I  R  L  E  S  V  I  F  V  G  D  *  G  *  A  I  Y  R  *  C  I  D  I  A  T  R  G  G  G  T  S  D  *  R  *  *  S  A  A  S  V  A  V  S  *  E  E  *  C  F  S  Q  C  T  L  F  S  G  D  *  Q  *  G  S  C  A  V  R  Q  R  *  Y  M  F  L  H  C  S  Y  S  H  F  L  A  L  R :   *  F  A  A  W  T  K  F  L  N  P  D  K  T  *  F  L  I  C  E  K  Y  K   : G  G  R  D  G  *  C  *  Q  *  T  N  G  V  W  V  L  *  K  S  I  S  *  C  S  C  N  F  F  *  S  L  H  N  L  S  S  C  K  H  *  *   : A  M  D  I  L  L  E  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96354" stop="96681"/>
                    <exon start="98364" stop="98434"/>
                    <exon start="98522" stop="98647"/>
                    <exon start="98732" stop="98755"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFKFISFHNFLQNHNFYIFFRMEESDWNQSFSSEIRDEQFTGDVSISRHEEEVPVIDDDDRRPPLPFPERNNVFHNAPYFPATDNEEVVRLDRDDTCSYIVVILTFWLFGNLQLGPNSSILIKPNSLFVKNIKVEEMDDANNRPTVYGFYENPSLDVLATSSEAYITSLPANTNKQWIYYLNQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="108205" PGL_stop="109274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108205" e_stop="108587"/>
            <exon e_start="108754" e_stop="109274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108205" e_stop="108587" e_length="383"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="108588" i_stop="108753" i_length="166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108754" e_stop="109274" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108205" stop="108587"/>
              <exon start="108754" stop="108948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108334" stop="108587"/>
              <exon start="108754" stop="109228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108783" stop="109274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGCCGAGTGGGATCCAGGAGAGAGTTTCGGCTGGGGGTTCCACAACAACCAGATCTGATGGAGATAATGTTAATTTGCAACCACTTGTTGCAATGTTTGGTACTTTAGTTGCCCAGGGTGAAAAGGCTGCAGCGTCTTTAGATATTTTAATCTCTAGTATATCAGCTGACTTGCTAGCAGATGTTGTGATGGCTAATATGAGAAATCTACCTTCAAATCAGCCAAAAGCTGTTGATGATGAAGAGCCACCTCTGAAGCCAGAGAATGTCTCTGATTTTAGACGATTATTATTACTGTTGATAGACGCTATTTCCCAGTCCACTATGTTAGCAGAACAAGATGAGAGAGCTGATCAAAATTTGGTCTCGATCGAGCCGGAG : CTGCAAAAAACTAAAGTGGCAGAAGAGCACCTTGATCCTGCCACTACTAATGGTACATTTGATGCCCTAAATTGTGCAAGTGAAGAAGCACCAGAATATGTAACTGAGCCTCTTTCTTCTACAAAGGGTACCCCTCAACTAATCGAAAATGATGTCTCATCCTTGCAATGTGATGTCGCTGACATTGAGAAAACTGAGGATTCCATACCTGGTCTAGATTCTGTAGCTCTCAAAGATGAAGAATCAGATCTTGTAGCTGTTTCAGCATTTGGTACAACTGAAGTTGAAGATGGTACTCAAGATCAAGGGTCTAGTGTAGTTAGGTCATCTTTGGAAGTAGTTCCATCAAATTCAACTGATAGGTCGGAGGAGCTTAGTCCAAAAGCAGCTGTAACAGATGTAACCAGCATGAACTCATCAACAGCTACTTCTATTGGGCTTTCTCCGCAGTTGCTTCTACCCAAGATATCTGCTCCAGTTATCAACCTCTCTGAAGAAGAGAAGGACAATTTACAGAAGTC</gDNA_template>
            <first_frame> K  S  R  V  G  S  R  R  E  F  R  L  G  V  P  Q  Q  P  D  L  M  E  I  M  L  I  C  N  H  L  L  Q  C  L  V  L  *  L  P  R  V  K  R  L  Q  R  L  *  I  F  *  S  L  V  Y  Q  L  T  C  *  Q  M  L  *  W  L  I  *  E  I  Y  L  Q  I  S  Q  K  L  L  M  M  K  S  H  L  *  S  Q  R  M  S  L  I  L  D  D  Y  Y  Y  C  *  *  T  L  F  P  S  P  L  C  *  Q  N  K  M  R  E  L  I  K  I  W  S  R  S  S  R  S :   C  K  K  L  K  W  Q  K  S  T  L  I  L  P  L  L  M  V  H  L  M  P  *  I  V  Q  V  K  K  H  Q  N  M  *  L  S  L  F  L  L  Q  R  V  P  L  N  *  S  K  M  M  S  H  P  C  N  V  M  S  L  T  L  R  K  L  R  I  P  Y  L  V  *  I  L  *  L  S  K  M  K  N  Q  I  L  *  L  F  Q  H  L  V  Q  L  K  L  K  M  V  L  K  I  K  G  L  V  *  L  G  H  L  W  K  *  F  H  Q  I  Q  L  I  G  R  R  S  L  V  Q  K  Q  L  *  Q  M  *  P  A  *  T  H  Q  Q  L  L  L  L  G  F  L  R  S  C  F  Y  P  R  Y  L  L  Q  L  S  T  S  L  K  K  R  R  T  I  Y  R  S  </first_frame>
            <second_frame>  R  A  E  W  D  P  G  E  S  F  G  W  G  F  H  N  N  Q  I  *  W  R  *  C  *  F  A  T  T  C  C  N  V  W  Y  F  S  C  P  G  *  K  G  C  S  V  F  R  Y  F  N  L  *  Y  I  S  *  L  A  S  R  C  C  D  G  *  Y  E  K  S  T  F  K  S  A  K  S  C  *  *  *  R  A  T  S  E  A  R  E  C  L  *  F  *  T  I  I  I  T  V  D  R  R  Y  F  P  V  H  Y  V  S  R  T  R  *  E  S  *  S  K  F  G  L  D  R  A  G   : A  A  K  N  *  S  G  R  R  A  P  *  S  C  H  Y  *  W  Y  I  *  C  P  K  L  C  K  *  R  S  T  R  I  C  N  *  A  S  F  F  Y  K  G  Y  P  S  T  N  R  K  *  C  L  I  L  A  M  *  C  R  *  H  *  E  N  *  G  F  H  T  W  S  R  F  C  S  S  Q  R  *  R  I  R  S  C  S  C  F  S  I  W  Y  N  *  S  *  R  W  Y  S  R  S  R  V  *  C  S  *  V  I  F  G  S  S  S  I  K  F  N  *  *  V  G  G  A  *  S  K  S  S  C  N  R  C  N  Q  H  E  L  I  N  S  Y  F  Y  W  A  F  S  A  V  A  S  T  Q  D  I  C  S  S  Y  Q  P  L  *  R  R  E  G  Q  F  T  E  V </second_frame>
            <third_frame>   E  P  S  G  I  Q  E  R  V  S  A  G  G  S  T  T  T  R  S  D  G  D  N  V  N  L  Q  P  L  V  A  M  F  G  T  L  V  A  Q  G  E  K  A  A  A  S  L  D  I  L  I  S  S  I  S  A  D  L  L  A  D  V  V  M  A  N  M  R  N  L  P  S  N  Q  P  K  A  V  D  D  E  E  P  P  L  K  P  E  N  V  S  D  F  R  R  L  L  L  L  L  I  D  A  I  S  Q  S  T  M  L  A  E  Q  D  E  R  A  D  Q  N  L  V  S  I  E  P  E  :  L  Q  K  T  K  V  A  E  E  H  L  D  P  A  T  T  N  G  T  F  D  A  L  N  C  A  S  E  E  A  P  E  Y  V  T  E  P  L  S  S  T  K  G  T  P  Q  L  I  E  N  D  V  S  S  L  Q  C  D  V  A  D  I  E  K  T  E  D  S  I  P  G  L  D  S  V  A  L  K  D  E  E  S  D  L  V  A  V  S  A  F  G  T  T  E  V  E  D  G  T  Q  D  Q  G  S  S  V  V  R  S  S  L  E  V  V  P  S  N  S  T  D  R  S  E  E  L  S  P  K  A  A  V  T  D  V  T  S  M  N  S  S  T  A  T  S  I  G  L  S  P  Q  L  L  L  P  K  I  S  A  P  V  I  N  L  S  E  E  E  K  D  N  L  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108207" stop="108587"/>
                    <exon start="108754" stop="109272"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPSGIQERVSAGGSTTTRSDGDNVNLQPLVAMFGTLVAQGEKAAASLDILISSISADLLADVVMANMRNLPSNQPKAVDDEEPPLKPENVSDFRRLLLLLIDAISQSTMLAEQDERADQNLVSIEPELQKTKVAEEHLDPATTNGTFDALNCASEEAPEYVTEPLSSTKGTPQLIENDVSSLQCDVADIEKTEDSIPGLDSVALKDEESDLVAVSAFGTTEVEDGTQDQGSSVVRSSLEVVPSNSTDRSEELSPKAAVTDVTSMNSSTATSIGLSPQLLLPKISAPVINLSEEEKDNLQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="109478" PGL_stop="110440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109478" e_stop="109542"/>
            <exon e_start="110074" e_stop="110190"/>
            <exon e_start="110277" e_stop="110440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.838" acc_prob="0.995" e_score="0.985"/>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="0.983"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="109478" e_stop="109542" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.838" acc_prob="0.995">
            <gDNA_intron_boundary i_start="109543" i_stop="110073" i_length="531"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="110074" e_stop="110190" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="110191" i_stop="110276" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="110277" e_stop="110440" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109478" stop="109542"/>
              <exon start="110074" stop="110190"/>
              <exon start="110277" stop="110440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447586" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCGGAGCTAAACCCTTGGAAATTTCTACAAACACATATATTGTCCGATTATATGAATCATGAG : GGGCACGAGTTGACATTGCGTGTCCTCTACAGGTTGTATGGGCATGCAGAAGAAGACCAGGATTTCTTTTCTTCAACAGCTGCAGCATCCGTATATGAAACATTTTTACTTGCAGTG : GCAGAAACACTTAGAGATTCTTTTCCAGCTTCTGACAAATCTCTAAGTAGATTGCTGTGTGAAGCTCCTCACTTACCAAATTCTACTCTCAAGTTGTTAGAGAGCTTCTGTTGTCCTGGTAGTTGTGAAAAGGATGAGAAGGAGTTGCATAGTGGAGATCGAGT</gDNA_template>
            <first_frame> L  R  S  *  T  L  G  N  F  Y  K  H  I  Y  C  P  I  I  *  I  M  R :   G  T  S  *  H  C  V  S  S  T  G  C  M  G  M  Q  K  K  T  R  I  S  F  L  Q  Q  L  Q  H  P  Y  M  K  H  F  Y  L  Q  W :   Q  K  H  L  E  I  L  F  Q  L  L  T  N  L  *  V  D  C  C  V  K  L  L  T  Y  Q  I  L  L  S  S  C  *  R  A  S  V  V  L  V  V  V  K  R  M  R  R  S  C  I  V  E  I  E  </first_frame>
            <second_frame>  F  G  A  K  P  L  E  I  S  T  N  T  Y  I  V  R  L  Y  E  S  *   : G  A  R  V  D  I  A  C  P  L  Q  V  V  W  A  C  R  R  R  P  G  F  L  F  F  N  S  C  S  I  R  I  *  N  I  F  T  C  S   : G  R  N  T  *  R  F  F  S  S  F  *  Q  I  S  K  *  I  A  V  *  S  S  S  L  T  K  F  Y  S  Q  V  V  R  E  L  L  L  S  W  *  L  *  K  G  *  E  G  V  A  *  W  R  S  S </second_frame>
            <third_frame>   S  E  L  N  P  W  K  F  L  Q  T  H  I  L  S  D  Y  M  N  H  E  :  G  H  E  L  T  L  R  V  L  Y  R  L  Y  G  H  A  E  E  D  Q  D  F  F  S  S  T  A  A  A  S  V  Y  E  T  F  L  L  A  V  :  A  E  T  L  R  D  S  F  P  A  S  D  K  S  L  S  R  L  L  C  E  A  P  H  L  P  N  S  T  L  K  L  L  E  S  F  C  C  P  G  S  C  E  K  D  E  K  E  L  H  S  G  D  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026I24.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109480" stop="109542"/>
                    <exon start="110074" stop="110190"/>
                    <exon start="110277" stop="110438"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELNPWKFLQTHILSDYMNHEGHELTLRVLYRLYGHAEEDQDFFSSTAAASVYETFLLAVAETLRDSFPASDKSLSRLLCEAPHLPNSTLKLLESFCCPGSCEKDEKELHSGDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 157 chains have been computed
$ 
$ memory statistics:
$ 216152 bytes spliced alignments in total
$ 101 spliced alignments have been stored
$ 2140 bytes was the average size of a spliced alignment
$ 25552 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1825 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 179 backtrace matrices have been allocated
$ 
$ date finished: 2008-04-18 01:39:52
-->
