<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 02:35:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330459" ref_strand="+" ref_description="SGN-U330459        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to hypothetical protein [Arabidopsis thaliana] (TAIR:At5g01150.1); similar to OSJNBa0006A01.16 [Oryza sativa (japonica cultivar-group)] (GB:CAD41561.3); contains InterPro domain Protein of unknown function DUF674 (InterPro:IPR007750) | chr3:2794210-2795996 REVERSE | Aliases: MZB10.14(evalue: 9e-08, score=53.5) genbank/nr: gi|5923679|gb|AAD56330.1| hypothetical protein [Arabidopsis thaliana] >gi|15232019|ref|NP_187526.1| expressed protein [Arabidopsis thaliana] (evalue: 1e-07, score=58.9)">
      <seq>gatatgaatcagattaaggagatgaatgtagaagttggcaggaacgaggtgattcgtctacttgctcgttcatttatttcaaagactcccttgtctgatgtgtttctgcccaagcaaaaacaaagaagggcacaagtagacattgtaacaatgtccgagtctggaaatttgtcgtccatttctgaaaatggaacgagtaatagcaccaagaagttggagctgaagctaacagtaaggaagtctacaaagaaggtcttgtgtgcagaagcagacaatgattttattgattttctcttcaacttcttgacgattcctataggatcaattgaagatgttctaaaagggagttctggcttgagatgtatcgataacttctataaaagtgtggaggctttagattcgaaatggttcaatatgcctccaaagcagaatagttaccatagtgaggatacatctaatgacaactttaagacagtattactcaagcccaatgttgccacacattataattctgagtatcagctgctacagatttcagaaggaaaatcagaattttacaatttgtatgatccaaggcaacatataaggggtagtcatgttcccaaatttcgtaagttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="25237" stop="26607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25537" g_stop="25584" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25585" i_stop="25735" i_length="151">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25736" g_stop="26307" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="620" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U330459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25537" e_stop="25584"/>
          <exon e_start="25736" e_stop="26307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGAATCAGATTAAGGAGATGAATGTAGAAGTTGGCAGGAACGAGGTATTGTCCTTTACCATCCGATTAATTAAAAGAATTAGTGATTACTACATTCTTAATAAAAAAAATTATGCTTTCTGATGATATGTTTTGCTGTGATTTTCGTAAATTGGCATTTGCAGCTAGTAACATGATCTTTTTCTGGACCATTTAGGTGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAAAGTGTGGAGGCTTTAGATTCGAAATGGTTCAATATGCCTCCAAAGCAGAATAGTTACCATAGTGAGGATACATCTAATGACAACTTTAAGACAGTATTACTCAAGCCCAATGTTGCCACACATTATAATTCTGAGTATCAGCTGCTACAGATTTCAGAAGGAAAATCAGAATTTTACAATTTGTATGATCCAAGGCAACATATAAGGGGTAGTCATGTTCCCAAATTTCGTAAGTTCGC</genome_strand>
        <mrna_strand>GATATGAATCAGATTAAGGAGATGAATGTAGAAGTTGGCAGGAACGAG.......................................................................................................................................................GTGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAAAGTGTGGAGGCTTTAGATTCGAAATGGTTCAATATGCCTCCAAAGCAGAATAGTTACCATAGTGAGGATACATCTAATGACAACTTTAAGACAGTATTACTCAAGCCCAATGTTGCCACACATTATAATTCTGAGTATCAGCTGCTACAGATTTCAGAAGGAAAATCAGAATTTTACAATTTGTATGATCCAAGGCAACATATAAGGGGTAGTCATGTTCCCAAATTTCGTAAGTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318614" ref_strand="+" ref_description="SGN-U318614        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | chaperone protein dnaJ-related, weak similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5) (Methylovorus sp.) | chr2:15910038-15912449 REVERSE | Aliases: T8P21.9, T8P21_9(evalue: 3e-162, score=568) genbank/nr: gi|15224422|ref|NP_181336.1| expressed protein [Arabidopsis thaliana] gi|25408585|pir||G84799 hypothetical protein At2g38000 [imported] - Arabidopsis thaliana gi|4895184|gb|AAD32771.1| unknown protein [Arabidopsis thaliana] gi|19424073|gb|AAL87350.1| unknown protein [Arabidopsis thaliana] gi|21281103|gb|AAM45095.1| unknown protein [Arabidopsis thaliana](evalue: 3e-160, score=568)">
      <seq>cccacacccacagcaaatggcgtgtgagaagataatctcctacatatcttacagtatatgactatgtactttcttcttcattaaggcacaaattggtttatatatcatgtggatagagggattatgttaaaatctactatttgaactgtgatctgagtcttaaatttgttggggagcaatggagcagccactgttgatagggaaagtagctagtgaaacaggtcaaagagggagtgagaaatggggttcttatgagtatgtgggaagggctggctctgtgattcccacgacttccttagctggatcagaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgggtactacggagatgcaagtgggactactggtgatcaacggaggcaagtgctagacgaggtagaagtacgagagttgcttatagatcatgttggccatcgctgctgttggggaagtcgtccagctcggacctggaagattcatgcaattgaagactgcaatgtctatgtgggaactctggaaactttcacggaagagagagatacagttgtagagaaggagctgtactccggtggcagcatcgaaggaaaggacaagggacctgaaacaggaatatgggagctagatttaaggtctgagtttcctgttttatttgtaccttacaaggaatcaaggctgagaattcctcattcagaaactattgagaaatgttcaggttgtgatggtcgaggcaatacagtttgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtacgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggtggtggttctcttttgacacagaaagtagctgttgttagatggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaatgacagagaggtttatatgaaagactactatccttctaggttttgttggggcctttgcccttgcctggaatggttgaagttataattcaagaactggatttgttgttgtcatcattggtttgagtttgtcccaagtgttcaaggggacaaaatgttggtttttgtgtagaataatatgctttatgatttgcactgttcccaaataaaaaaaaaaaaaaaagttgtcttcctaacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="38182" stop="43519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38482" g_stop="38681" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39576" g_stop="39797" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="422" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40625" g_stop="40691" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="489" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41001" g_stop="41332" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="821" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41333" i_stop="41490" i_length="158">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41491" g_stop="41632" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="822" r_stop="963" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41839" g_stop="41964" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="964" r_stop="1089" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41965" i_stop="42680" i_length="716">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42681" g_stop="43235" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1090" r_stop="1644" r_length="555" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U318614" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38482" e_stop="38681"/>
          <exon e_start="39576" e_stop="39797"/>
          <exon e_start="40625" e_stop="40691"/>
          <exon e_start="41001" e_stop="41332"/>
          <exon e_start="41491" e_stop="41632"/>
          <exon e_start="41839" e_stop="41964"/>
          <exon e_start="42681" e_stop="43235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACACCCACAGCAAATGGCGTGTGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAGGTTAGTCATTTTTTCTATCATCATTAAAGCTTAAAGCTTGAATCTTTTATGTCAGTATTTTATACCCTTTTCTTGATTTACAATCTTCCAATTTTATATAGCTAAATTGCTTAAAGATTGAATCTTTACTGTTAATTTGTATACCCTTTTGTTGCTTATACCATTATATGCATAGCCTAGTTGCTTAAAGCTTGAATCTTTTCTGTCAATTTTTATGCCCCTTTTCTTGGTCTGCCCTTTTTGCATATCTTGTATTCTGAAGCTTGAATCTTTTTATGAATGTTTAATACACTTTTATTGCTTTTCTCATTTTTGCACAGAATCATTGGTTAAAGCTTGAATCCTTTCTCTAAATATTTTATACCCTTTTATTACTAGTCCAATTTTGTATAAATGGTTCGAGATGTAGAAATAGCCTCTTGTGTAGAAATATAGGGTGCGGCTGCATATAGAGCCTTGTGGTCTGGCCTTTCTTGGACCCTGCACATCACGGGAGCTTTAGTGCATTGTGCTGCCTTTTTTCATTGCTTGAGACCTGAATCTTTTCTGTGTTCGTTAACCCTCTTCTTGCTTTTCCCTTTATCTTTTCTGAAAAAATCCTATACCCTTTCATTACTAGTTCAATTTTGCACAAATGGTTAGCCTCTTACAGAATTAATACTGTGTATAGATCCTTGTGCTCTGGCCCTTTCTGGACCCTGCATGCTTTAGCACACCGGACTGCCTGTTTTCATTGCATAAAGCTTGAATATTTTCTGTTTAACCCACTTCTTGCTTTGCCCTTTTTGCATCCTTAATTGCTTTAAGTGGGGATCTTTTCTTTTTTCAATTCTTTCTAGCTTTTACCTTTTCGCATAGCTTAATTTTGTGTTTGATGTGACTTCCAAAAAGCAGGGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAAAAAAAAGTTGTCTTCCTATCAATAATTGTCATGATAGGAAA</genome_strand>
        <mrna_strand>CCCACACCCACAGCAAATGGCGTGTGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG.....................................................................................................................................................................................................................................................................................................................GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG..............................................................................................................................................................GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAAAAAAAAAAAAGTTGTCTTCCTAACAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318612" ref_strand="+" ref_description="SGN-U318612        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | chaperone protein dnaJ-related, weak similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5) (Methylovorus sp.) | chr2:15910038-15912449 REVERSE | Aliases: T8P21.9, T8P21_9(evalue: 7e-86, score=313) genbank/nr: gi|15224422|ref|NP_181336.1| expressed protein [Arabidopsis thaliana] gi|25408585|pir||G84799 hypothetical protein At2g38000 [imported] - Arabidopsis thaliana gi|4895184|gb|AAD32771.1| unknown protein [Arabidopsis thaliana] gi|19424073|gb|AAL87350.1| unknown protein [Arabidopsis thaliana] gi|21281103|gb|AAM45095.1| unknown protein [Arabidopsis thaliana](evalue: 5e-84, score=313)">
      <seq>tggggttcttacgagtatgtgggaagggcctggctctgtgattcccacgacttccttagctggatcagaaagtcagcgttgatgagattcggtctgctgcttctatgtcagttccttactctccttctctccatgcccccttgatcagctctcctcaatcccaatcccagccacagttttatgaacaagggattgtttatcagggtgtgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtacgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggtggtggttctcttttgacacagaaagtagctgttgttagatggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacctgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaatgacagagaggtttatatgaaagactactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="39317" stop="43311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39617" g_stop="39797" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40625" g_stop="40648" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="207" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40649" i_stop="41516" i_length="868">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41517" g_stop="41632" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="323" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41839" g_stop="41964" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="449" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41965" i_stop="42680" i_length="716">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42681" g_stop="43011" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="780" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U318612" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39617" e_stop="39797"/>
          <exon e_start="40625" e_stop="40648"/>
          <exon e_start="41517" e_stop="41632"/>
          <exon e_start="41839" e_stop="41964"/>
          <exon e_start="42681" e_stop="43011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGTTCTTATGAGTATGTGGGAAGGG-CTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAG-AAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATGGTAAGTTCCCTACTAACTCATCAATTCATACCTGCTTATTCTATGTTGAGTTCTATATACTACATCCATTTTATATCATATGGTAGTGTTTGACTGTACACAATTTTTTTAATAAAGAAAGAGAACTTTTGGCATATGGAAAGTACACTTAGAGCTAGTAGTAGAGCAGTATGCCGTTAAGGTTGAAATAAGAAGTTTAAAATTAAAGAATTTCCAAATATAAAAAGGTGTTGTTCTTTCTTTTTGGAACATAGTTAGAAGGAATAAGTAACATATAAAATGAAATAGATGGAGTAACTCTTATATTTTGCTGAGCAAAAAGGGTTCTTAACCGTTGCTTTTAGCTTGGTGCTATTACAATTTTACTTGATTTATCATAATGTACACACATTTAAGTTGTTTTCTAGCTTAGGGACTTCCCGATTTATTAAGCATACCCCACTTAATTGGTATTGAGGCGTAGTTGTTGTTGTTGTTTGTACAAACCCATACCCATATGGTGCTTCCTTATTCATGGTTGCCTGCTGGTTAGTAGTTAATACCAGAACTGTCTGGCCTTATGATTTGCATTAAGTTTTACCTCCATAGTTCTTGTGAATTTTCTGAATATAATTAAGCTATCTGTTTAAATTTTTATCTGATTTTAGCTGATGATAGGATGTTGGTACCTTTTACTTTCCTTTTGTTTTTCATTGGTAAAGCTCATAACTGTGATTAGATCACTTGCACGGTGCAAGTGGTTTCTTTGCTCTAGAGTATGCATATGACTTCCCTGCAGTGTTGTCACTATGTCTTATTTGTAACATCATGTTTATCTCTTGTTGCAGAACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAGGTAATTACACCACATTCTTCTTAACACTGGTCTTTCTTGGGTTACATAGGCTATATCTTTTGAACTTATTACTCGTTAATTGCTGCACAAGTTTCCTCTCCTGCCGACTTCAGGAGACCAATTAGAGTTCTGAAACAAGTAACGAGAAATACAAGGAATTATAATATTTGAGTTACAATATAAAGATGATTTCCAATATTTTTCTTCATAGTTACTGTAGTTTTATGCATGCGTTTATTCTTTTTTGTCTCCTTGATTTTGCTTTATGGTTTTTGCAACAGCATTTTGATTAACTCAATTTTTTGGCAGGCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTAT</genome_strand>
        <mrna_strand>TGGGGTTCTTACGAGTATGTGGGAAGGGCCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGGATTGTTTATCAGGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACCTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U318613" ref_strand="+" ref_description="SGN-U318613        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | chaperone protein dnaJ-related, weak similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5) (Methylovorus sp.) | chr2:15910038-15912449 REVERSE | Aliases: T8P21.9, T8P21_9(evalue: 4e-80, score=160) genbank/nr: gi|15224422|ref|NP_181336.1| expressed protein [Arabidopsis thaliana] gi|25408585|pir||G84799 hypothetical protein At2g38000 [imported] - Arabidopsis thaliana gi|4895184|gb|AAD32771.1| unknown protein [Arabidopsis thaliana] gi|19424073|gb|AAL87350.1| unknown protein [Arabidopsis thaliana] gi|21281103|gb|AAM45095.1| unknown protein [Arabidopsis thaliana](evalue: 3e-78, score=160)">
      <seq>tgagaattcctcattcagaaactattgagaaatgttcaggttgtgatggtcgaggcaatacagtttgtcctacttgcaatacagatcaagatccagggttctacaaggagggtcaaatgactcagtgtacgacttgctatggaaggggtctaattgctcataaggatggatctgatacaatatgcctgaattgtaaaggtaatggaaaacttccttgtgtgacttgtgaatctcgtggcctcatcaaatgccaaacatgccaaggaggacgcattcaaccaggaaagttaatgctacaagcggagcagcttctgttccagacgacgtgtttcacagagcaaagggagttcagttgtgcaataaccaagcttaccagtgcacgccagcctactttgctgattcgtatttcctgaacaagttctcttctgaagtaattgcagagaggccttctgtacctactactgcaaggatcatatgcgagcgccacatcatctcagttgtcccagtgactcgcgtgactatgactgatcgtaaccgctccttcagcttctatattattggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="40994" stop="43281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41294" g_stop="41332" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41333" i_stop="41490" i_length="158">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41491" g_stop="41632" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="181" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41839" g_stop="41921" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="264" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41922" i_stop="42680" i_length="759">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42681" g_stop="42981" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="565" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U318613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41294" e_stop="41332"/>
          <exon e_start="41491" e_stop="41632"/>
          <exon e_start="41839" e_stop="41921"/>
          <exon e_start="42681" e_stop="42981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAGGTAATAGACATGGTTCGTGGGATAGTCATCTTGCATTTGTTAATAGAATAACAAAATAATCACCTAAAAAAAAGTATATAGCTCTATCTCTTGTGTTACTATTGTACTGTCTAACATTTTTCCTTCCGTGATTTTTGCTTATGTTATTTGCTTCACAGGTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAATGTGAGCTTTTGACTGAGAGTTAACTGTTGCACAAGTTTTTGGTGTTTTATGATCTATATAGATGAAACTCTTACCCTATTTCTCATCTAAATTTCCTTCTCCTTCATGGTTTCTGTTGGTGGAATTTCTGGTAACAAATGCCAATTTTTGTGGTGTCCGACTGATGTAAGCGATTTACTGAAAGAATTTTCCCCCCTCTTTTGCAGATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATGGTATTTCATCTTTACTTTTGATTTATTATTACTCAAATCTTTATTGAAAACTAAAATCAAGGAAATCATGACGCTGTCAAGTGACGTTTTACTCGTACAAATTATCTAGTCTTTTGATATTATGCTGTGTAAATAAGCTAATTTGGCTGTCTTAGGCAGAAACACACTAATCAATCAGTATAAACTACTGAAACGTTTAAGAGAAGTTTTGTGGTTTCGAGTCGTGATTAATTAGGAACTCTGTATTTCTTGTGTTGGCCTCGTTAGTACCCTGCTTCTTGTCTAGAGAAAATAAAAACAATTCCCGGGCAGAATACGCATAAACTGATACCCATTGCAATTAGAATACAGACCCAAAATGTAATCCTTTTGTGGTATCATAATAGTCCAGTCCAGAACTGCTATGTAAACCACTTGTCTAATTTGACGTAACTGTATGCCATGAAACATGAATGACAGACTTCAGTCATCCTTATAGCAAACAGTTTCTCATCCATATGATTTGAGGTATCGTGTAGTATTTTTGGTGTTTATGCAGAGCGATGGATCATATAAGACGTAAATGTACTCTTTGTCCATCTAGTTTTTACCAACATGGCCGAAGTATACAATACCTATACACTTTGGTTAAAGTATAGACTACCTTTACTCTGTGTACATATTCTGTAAACTAGATGACCCAAAGGCATTGGAATGTAATTGACTTCTTATCGTAGGAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAAT</genome_strand>
        <mrna_strand>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG..............................................................................................................................................................GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT..............................................................................................................................................................................................................ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346705" ref_strand="+" ref_description="SGN-U346705        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 1e-34, score=150)">
      <seq>ggttacctgaacttcaatctcatttttgagttgaatttttatctcattagttatgattcgattctccacctttgtaatcctctttccaattaccctttgtagctaccctgttttattttatttttaaaaagttaatataatgtcataattgtttttcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="43037" stop="43797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43337" g_stop="43505" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U346705" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43337" e_stop="43505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTACCTGAACTTCAATCTCATTTTTGAGTTGAATTTTTATCTCATTAGTTATGATTCGATTCTCCACCTTTGTAATCCTCTTTCCAATTACCCTTTGTAGCTACCCTGTTTTATTTTATTTTTAAAAAGTTAATATAATGTCATAATTGTTTTTCGTAAGTGCAAGT</genome_strand>
        <mrna_strand>GGTTACCTGAACTTCAATCTCATTTTTGAGTTGAATTTTTATCTCATTAGTTATGATTCGATTCTCCACCTTTGTAATCCTCTTTCCAATTACCCTTTGTAGCTACCCTGTTTTATTTTATTTTTAAAAAGTTAATATAATGTCATAATTGTTTTTCGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U317884" ref_strand="+" ref_description="SGN-U317884        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | prephenate dehydrogenase family protein, contains Pfam profile: PF02153 prephenate dehydrogenase | chr1:5404354-5405681 FORWARD | Aliases: F7H2.5, F7H2_5(evalue: 2e-102, score=369) genbank/nr: Prephenate(evalue: 5e-102, score=374)">
      <seq>tttctttctttgtgtttttagtctaaaagttatttcttttcttctctctcttattaaagaaaaaaaataataagagggagaaaataaatttcacattcaaccatgttttccctttcatctatacaatctaacaatattcaatctcaatcatcttcgtcgctactcttcaatcatcatcaccagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtcgatcttgatgacaatctaaccagacttgataaattttcaaaatcattaagtatttcgaatatcgaagaaaatacatcattaaatcccctcttatgttccaataacaagctcaaaatagctatcataggctttggaaactttggacaatttattgccaaatcctttatcaaacaaggccatgttgtattagctcattcacgtagtgattattccctcatagcacaatcccttaatgtccacttctttcaagatcctaatgacttatgtgaacaacatcctgacgttattttactttgcacatccatcaattcactcgaaaacgtcattcgttcccttcccatccaaaagcttaaacgtaacacacttttcgtagacgtattatcagtcaaagaattcccgaaaaacatttttcttcaatcactaccaaaagaatttgatattttgtgtactcatcctatgtttggtccaacaagtggtaaagacaattggaaaggactaccatttatgtatgacaaagttagaattggacaagaagagtcaagaattaaaagagtcaacaattttatcaacatttttgtaaaagaaggttgtagaatggttgaaatgagttgtagtgaacatgacaagtatgctgctggatcacaatttattacacatactattggaagaatgttacaaagacttgggacacaaacaactcctataaacacaaaaggatatgaaagtttgttgaatttgatggagaatacaactagtgatagttttgatttgtattgtggtttgtttatgtataacaataattcaatggaggtgttagagaaactagatgcagcattggatagtttgaaaagggaattatttggacaagttcttaaaaagttggagaaaagagtggaaaagggaagtaagttagctttacctactcctgattttagtaagaaaattgaaaaattgaaagttgagaggaaggaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="45039" stop="46899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45339" g_stop="46599" g_length="1261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1261" r_length="1261" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U317884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45339" e_stop="46599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTCAAAAGTTGGAGAAAAGAGTGGAAAAGGGAAGTAGGTTAGCTTTACCTACTCCTGATTTTAGTAAGAAAATTGAAAAATTGAAAGTTGAGAGGAAGGAACTAG</genome_strand>
        <mrna_strand>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTAAAAAGTTGGAGAAAAGAGTGGAAAAGGGAAGTAAGTTAGCTTTACCTACTCCTGATTTTAGTAAGAAAATTGAAAAATTGAAAGTTGAGAGGAAGGAACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336319" ref_strand="+" ref_description="SGN-U336319        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | arogenate dehydrogenase, identical to arogenate dehydrogenase GI:16903098 from (Arabidopsis thaliana); contains Pfam profile: PF02153: prephenate dehydrogenase | chr5:13250604-13252797 FORWARD | Aliases: T2L5.1(evalue: 1e-09, score=60.8) genbank/nr: contains(evalue: 9e-08, score=60.8)">
      <seq>accagcattcaactatttcaactcggtttcatcaccaccgcctactcttccctctccgtgcccaaaatagcgacttaactacagccaccaccaataacaactatgtnatcttgatgaaatctaaccagacttgataatttaaaatcattagttttcgaatatcgaaaatcatcattaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="45217" stop="45963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45517" g_stop="45710" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U336319" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>194</cumulative_length_of_scored_exons>
        <coverage percentage="1.066" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45517" e_stop="45710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCC</genome_strand>
        <mrna_strand>ACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGT-NATCTTGATGA-AATCTAACCAGACTTGAT-AA-TTT-AAAATCATT-AGT-TTTCGAATATC---GAAAAT-CATCATT-AATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U336318" ref_strand="+" ref_description="SGN-U336318        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | prephenate dehydrogenase family protein, contains Pfam profile: PF02153 prephenate dehydrogenase | chr1:5404354-5405681 FORWARD | Aliases: F7H2.5, F7H2_5(evalue: 1e-40, score=163) genbank/nr: Prephenate(evalue: 1e-39, score=166)">
      <seq>cggagttttttttttttttttttttttttttttttttttttttttttttttttttttttttaaaaacttggccaaataattcccttttcaaactatccaatgctggatttagtttctttaacccccccattgaattattgttttacataaacaaaccacaatgcaaatcaaaactttcactagttgttttctccatcaaattcaacaaactttcatatccttttgggtttataggagttgtttgggccccaagtctttggaacattcttccaatagtatgtgtaataaattgggatccagcagcatacttggcatgttcactacaactcattttaaccattctacaacctttttttacaaaaatggtgataaaattggtgactcttttaattcttgacttttcttggccaattctaactttggcatacataaatggggggcctttccaattggctttaccacttgttggaccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="135401" stop="45782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47357" g_stop="47315" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.674"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47314" i_stop="46515" i_length="800">
            <donor d_prob="0.000" d_score="0.67"/>
            <acceptor a_prob="0.000" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46514" g_stop="46082" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="476" r_length="433" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U336318" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47357" e_stop="47315"/>
          <exon e_start="46514" e_stop="46082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGTTATTTTGTATAAATTGATTCATTCAATTTTTTTTTTGGTAGAAAAGTATATTGCTTATATATGGTTAAAATAATTTTATATGTATATAATAGATGTTGTACTCTCTTCGACTATTTCATGTGTCTATTCTTACAATTTTTAAATTATCTTATTGAAAATTTTAGTTCCACCCCTATGACCAAGTTTGGTAAATACTATATTATTTCACTTCAATTCACTTTTCTCTTCTTTTATTTCATGATTGGTATGACAAATAAATATTATTCATAGAAATTATTTTCTTAGTCACTTATTTTCTACTGTATGATAAAAGAAGTGAGAAAATATTATTTCAATAACATTTATATTATCTAGCAAACTATTATAGAGATATAGTGAGATGTACAGTAGAGGCTCAATTATAATTTTGATCTAAAATAAATTTTAGATGTTTATATATTGCTATAAATTATTTCATAAATGGTAAAAAATTTTAGTTATTAATAATTATAAAAAGATAAAATTTATTTGCAGAACAAACTAAAAAAGAAAACGTGTCTTTCGAACAGAAAGAACAATATATCAACTCTTATTATACAAAATTACAAATCTTTGTTGTTTTATTAGAAAAAGATAAAAATTATTACACAAATCAACCACTCTACTTGTTCAGGACAAATGAGATCTTCGGCCTGCATGCCTGGAAGCAGCTCAAACAAAGAAGAGTCTGGTCCGATCTGAATTCAGGCACGGCTAGTATCAAGAAAGTGCCTCTAGTTCCTTCCTCTCAACTTTCAATTTTTCAATTTTCTTACTAAAATCAGGAGTAGGTAAAGCTAACCTACTTCCCTTTTCCACTCTTTTCTCCAACTTTTGAAGAACTTGTCCAAATAATTCCCTTTTCAAACTATCCAATGCTGCATCTAGTTTCTCTAACACCTCCATTGAATTATTGTTATACATAAACAAACCACAATACAAATCAAAACTATCACTAGTTGTATTCTCCATCAAATTCAACAAACTTTCATATCCTTTTGTGTTTATAGGAGTTGTTTGTGTCCCAAGTCTTTGTAACATTCTTCCAATAGTATGTGTAATAAATTGTGATCCAGCAGCATACTTGTCATGTTCACTACAACTCATTTCAACCATTCTACAACCTTCTTTTACAAAAATGTTGATAAAATTGTTGACTCTTTTAATTCTTGACTCTTCTTGTCCAATTCTAACTTTGTCATACATAAATGGTAGTCCTTTCCAATTGTCTTTACCACTTGTTGGACCAAAC</genome_strand>
        <mrna_strand>CGGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTAAAAACTTGGCCAAATAATTCCCTTTTCAAACTATCCAATGCTGGATTTAGTTTCTTTAACCCCCCCATTGAATTATTGTTTTACATAAACAAACCACAATGCAAATCAAAACTTTCACTAGTTGTTTTCTCCATCAAATTCAACAAACTTTCATATCCTTTTGGGTTTATAGGAGTTGTTTGGGCCCCAAGTCTTTGGAACATTCTTCCAATAGTATGTGTAATAAATTGGGATCCAGCAGCATACTTGGCATGTTCACTACAACTCATTTTAACCATTCTACAACCTTTTTTTACAAAAATGGTGATAAAATTGGTGACTCTTTTAATTCTTGACTTTTCTTGGCCAATTCTAACTTTGGCATACATAAATGGGGGGCCTTTCCAATTGGCTTTACCACTTGTTGGACCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="55402" stop="54502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55102" g_stop="54802" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55102" e_stop="54802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGAAGTATGAGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGAAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCCCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGTTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTTAAGCAAGCCCCCCGTGCTTGGTACACACGTTTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="55829" stop="54743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55529" g_stop="55043" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55529" e_stop="55043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACTCCATACCCATAACATCTCCAGCCTGATCCGTTTTGGATCCTTCCCGGCCACCCCCAAATCACCACCGCCCGTGCCACTCCCCAATACTCATCTCATGTTAACCCATGGCAAAGCCGATATCTTTAAACCCAAAAACCTTTCAGGCTACCATACTACCAAATACACCCCCTTTCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTGTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGAATGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCTAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGAAGTATGAGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCC-AAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U343814" ref_strand="+" ref_description="SGN-U343814        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to axi 1 (Nicotiana tabacum) GI:559921; contains Pfam profile PF03138: Plant protein family | chr2:15901135-15904688 REVERSE | Aliases: T8P21.11, T8P21_11(evalue: 4e-94, score=340) genbank/nr: gi|15224418|ref|NP_181334.1| axi 1 protein from Nicotiana tabacum -related [Arabidopsis thaliana] gi|25408582|pir||E84799 similar to axi 1 protein from Nicotiana tabacum [imported] - Arabidopsis thaliana gi|4895186|gb|AAD32773.1| axi 1-like protein [Arabidopsis thaliana] gi|13430694|gb|AAK25969.1| putative axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gi|25054996|gb|AAN71964.1| putative axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana](evalue: 3e-92, score=340)">
      <seq>gagtttggaaagaagttggttgatagacttagagatattggtgaaccatttatcgctctccatttaagatacgagaaagacatgctagcgtttactggctgcagcaacaatttgactattgaagaggctgaagaacttcgtacgatgaggtatgaagtgaaacattggaaggagaaagagatagacagcaaggaaaagcgactccagggaggctgccccatgtcccctagggaggctgctttatttctcaaagcgatgggatatctgtccacgaccagaatatacattgttgcaggggaaatttatggcaacaacagcatggatgaattccgttctcattacccgaatgtgtactctcactcaacccttgcaacaaatgaagaacttgaggctttcaagaattatcaaaaccgtcttgctgcagtagactacatggtagcccttgaaagcgatgtttttgcttacacttacgatggcaatatggcgaaggccgtgcaaggtcatagacgatttgaaggatttcggaagaccattaacccggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="65802" stop="67033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66102" g_stop="66169" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66170" i_stop="66257" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66258" g_stop="66733" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="544" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U343814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66102" e_stop="66169"/>
          <exon e_start="66258" e_stop="66733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTGGAAAGAAGTTGGTTGATAGACTTAGAGATATTGGTGAACCATTTATCGCTCTCCATTTAAGGTAATCTATCTAAACACTTTTGTGTTTCTTCTTCTATTCTTTAACCAATTGATCTATGAGTAACTTGGTATATTGCTCAATTGTACAGATACGAGAAAGACATGCTAGCGTTTACTGGCTGCAGCAACAATTTGACTATTGAAGAGGCTGAAGAACTTCGTACGATGAGGTATGAAGTGAAACATTGGAAGGAGAAAGAGATAGACAGCAAGGAAAAGCGACTCCAGGGAGGCTGCCCCATGTCCCCTAGGGAGGCTGCTTTATTTCTCAAAGCGATGGGATATCTGTCCACGACCAGAATATACATTGTTGCAGGGGAAATTTATGGCAACAACAGCATGGATGAATTCCGTTCTCATTACCCGAATGTGTACTCTCACTCAACCCTTGCAACAAATGAAGAACTTGAGGCTTTCAAGAATTATCAAAACCGTCTTGCTGCAGTAGACTACATGGTAGCCCTTGAAAGCGATGTTTTTGCTTACACTTACGATGGCAATATGGCGAAGGCCGTGCAAGGTCATAGACGATTTGAAGGATTTCGGAAGACCATTAACCCGGACA</genome_strand>
        <mrna_strand>GAGTTTGGAAAGAAGTTGGTTGATAGACTTAGAGATATTGGTGAACCATTTATCGCTCTCCATTTAAG........................................................................................ATACGAGAAAGACATGCTAGCGTTTACTGGCTGCAGCAACAATTTGACTATTGAAGAGGCTGAAGAACTTCGTACGATGAGGTATGAAGTGAAACATTGGAAGGAGAAAGAGATAGACAGCAAGGAAAAGCGACTCCAGGGAGGCTGCCCCATGTCCCCTAGGGAGGCTGCTTTATTTCTCAAAGCGATGGGATATCTGTCCACGACCAGAATATACATTGTTGCAGGGGAAATTTATGGCAACAACAGCATGGATGAATTCCGTTCTCATTACCCGAATGTGTACTCTCACTCAACCCTTGCAACAAATGAAGAACTTGAGGCTTTCAAGAATTATCAAAACCGTCTTGCTGCAGTAGACTACATGGTAGCCCTTGAAAGCGATGTTTTTGCTTACACTTACGATGGCAATATGGCGAAGGCCGTGCAAGGTCATAGACGATTTGAAGGATTTCGGAAGACCATTAACCCGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329146" ref_strand="+" ref_description="SGN-U329146        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to axi 1 (Nicotiana tabacum) GI:559921; contains Pfam profile PF03138: Plant protein family | chr5:34595-37947 REVERSE | Aliases: F7J8.80, F7J8_80(evalue: 1e-23, score=106) genbank/nr: gi|15240890|ref|NP_195730.1| expressed protein [Arabidopsis thaliana] gi|11357840|pir||T45950 hypothetical protein F7J8.80 - Arabidopsis thaliana gi|6759433|emb|CAB69838.1| putative protein [Arabidopsis thaliana](evalue: 9e-22, score=106)">
      <seq>ttttcatcacttgaatcaaaaccaacaataatactgatacattttcttcattttttcaggttcaactttgtaagattgatcgactcgttagataaaggtgaaatctcttgggaagagtttgcttcaaaagttaaggccttacaatccaacagattaggagcaccttacctaagacaagccggtgaatcaccacgattagaggagaacttttacgcaaatcctttaccaggttgcttgtgtaatcgatcacacgaagaagccagtaaacaactcaacaagagaccaagactgagggttgcttcacaaagataggtactttcaatgatcataatgtggtagattagttcaatatcaatatacatgttctacaaatggcctataaggggttgccagaagtcgggtttttcatcgcccttcacactgcgcagcgagcagaaagaaagagagattgttgtaagaagcaaagcagtacttggaagcagagatatgatggtttataagatggacaaaagaaagcatatacacaaaccagagagatgtactcaaaaatcattctttagggtggaatataaaaattcatttattttttttattttttttttctgagttagttttatgatttaggttcaacaaggattgatcatatatgtattaccaattcatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="66472" stop="67740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66772" g_stop="67440" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U329146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66772" e_stop="67440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAGAAAGCATATACACAAACCAGAGAGATGTACTCAAAAATCATTCTTTAGGGTGGAATATAAAAATTCATTTATTTTTTTTATTTTTTTTTTCTGAGTTAGTTTTATGATTTAGGTTCAACAAGGATTGATCATATATGTATTACCAATTCATGAAAAA</genome_strand>
        <mrna_strand>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAGAAAGCATATACACAAACCAGAGAGATGTACTCAAAAATCATTCTTTAGGGTGGAATATAAAAATTCATTTATTTTTTTTATTTTTTTTTTCTGAGTTAGTTTTATGATTTAGGTTCAACAAGGATTGATCATATATGTATTACCAATTCATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U347000" ref_strand="+" ref_description="SGN-U347000        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase | chr3:20039102-20040964 FORWARD | Aliases: F24B22.50(evalue: 2e-36, score=145) genbank/nr: gi|15232415|ref|NP_190977.1| pfkB type carbohydrate kinase protein family [Arabidopsis thaliana] gi|11357296|pir||T47568 fructokinase-like protein - Arabidopsis thaliana gi|6822055|emb|CAB70983.1| fructokinase-like protein [Arabidopsis thaliana] gi|20260524|gb|AAM13160.1| fructokinase-like protein [Arabidopsis thaliana] gi|22136278|gb|AAM91217.1| fructokinase-like protein [Arabidopsis thaliana](evalue: 2e-34, score=145)">
      <seq>ttttttttttgatataaaagggaaaagtgaaaactgcctactcattacaacagtgaagaatctatataacatcctttaaccatgagatgcacaatcaaattaactgattttgagttacaaatgggactggtttacaaagatcatgcacttacaaaaacactatggatctttcctcaagaacctataatttgtcggattaattacaacgaaatctacgtttaagtagtaacttttgcagaaaacaaggtcctgagaattggcattatggcactactaccacatcgatggtacataaacctgctctttgagattctgtgtggcgctttcagtaggaaaacctctaacagcacctattgtccactgggatattatgcctgctgcaatagcaaagcgaagctgtctctttagaacattttgatcgtggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="70701" stop="71717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70992" g_stop="71417" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U347000" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U347000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70992" e_stop="71417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACAAAATGATATAATAGTGAAAAGTGAAAACTGCCTACTCATTACAACAGTGAAGAATCTATATAACATCCTTTAACCATGAGATGCACAATCAAATTAACTGATTTTGAGTTACAAATGGGACTGGTTTACAAAGATCATGCACTTACAAAAACACTATGGATCTTTCCTCAAGAACCTATAATTTGTCGGATTAATTACAACGAAATCTACGTTTAAGTAGTAACTTCTGCAGAAAACAAGGTCCTGAGAATTGGCATTATGGCACTACTACCACATCGATGGTACATAAACCTGCTCTTTGAGATTCTGTGTGGCGCTTTCAGTAGGAAAACCTCTAACAGCACCTATTGTCCACTGGGATATTATGCCTGCTGCAATAGCAAAGCGAAGCTGTCTCTCTAGAACATCTTGATCGTGGTA</genome_strand>
        <mrna_strand>TTTTTTTTTTGATATAAAAGGGAAAAGTGAAAACTGCCTACTCATTACAACAGTGAAGAATCTATATAACATCCTTTAACCATGAGATGCACAATCAAATTAACTGATTTTGAGTTACAAATGGGACTGGTTTACAAAGATCATGCACTTACAAAAACACTATGGATCTTTCCTCAAGAACCTATAATTTGTCGGATTAATTACAACGAAATCTACGTTTAAGTAGTAACTTTTGCAGAAAACAAGGTCCTGAGAATTGGCATTATGGCACTACTACCACATCGATGGTACATAAACCTGCTCTTTGAGATTCTGTGTGGCGCTTTCAGTAGGAAAACCTCTAACAGCACCTATTGTCCACTGGGATATTATGCCTGCTGCAATAGCAAAGCGAAGCTGTCTCTTTAGAACATTTTGATCGTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U332805" ref_strand="+" ref_description="SGN-U332805        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase | chr3:20039102-20040964 FORWARD | Aliases: F24B22.50(evalue: 2e-79, score=290) genbank/nr: gi|15232415|ref|NP_190977.1| pfkB type carbohydrate kinase protein family [Arabidopsis thaliana] gi|11357296|pir||T47568 fructokinase-like protein - Arabidopsis thaliana gi|6822055|emb|CAB70983.1| fructokinase-like protein [Arabidopsis thaliana] gi|20260524|gb|AAM13160.1| fructokinase-like protein [Arabidopsis thaliana] gi|22136278|gb|AAM91217.1| fructokinase-like protein [Arabidopsis thaliana](evalue: 1e-77, score=290)">
      <seq>ccgaattgaatcttgatgttctgaaagaggctaggatgttccactttaattctgaagtcttgacatcttcatctatgcgttcaactctttttaaagcaattacattgtcaaagaagtttggtggtcttgtattttttgacttaaatctgccattgcctctgtggagatcacgtgacgaaacaagggatttgatcaaggaagcctggcagcaagctaacatcattgaggtttcgaggcaagagcttgaatttcttcttgacgaagagcattacgagaggaaaaggaattatagacctcaatactttgcggagaattacgaacaaaccaaacaaagaagaaattattatcactatactcctgaggaaattgctcccttgtggcacgacggactgaaacttctgtttgttacagatgggacacttaggattcattactattccccttcttttgatggggtggttgttggtacagaagatgtgctcataacaccgtttacttgggataaaactggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="73389" stop="71171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73089" g_stop="73061" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73060" i_stop="71958" i_length="1103">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71957" g_stop="71471" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="516" r_length="487" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U332805" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73089" e_stop="73061"/>
          <exon e_start="71957" e_stop="71471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAATTGAATCTTGATGTTCTGAAAGAGGTATGTGGAAGTGTTGTTATTAAAAGTAAAGATATATTTTTATTTATGGATAGATTAAGCATGTTGTTGTTTCTATTTGTGTAGTGATGTTTGGCTTTAAATGTTAATAGAGGATGCATGAATCTAATTTGCTATGTGATTGGTATTAAACTATGTTGCGCAAAATGGCTTATGAAAGAACCCCATGGCTGCTTTTCTTAAGATATCGTCTGACCCGCTGGGGTCGTTGCTCTTATCTTGTTCTCCCGTTGTGAAACCAGTTCATTTCGTAGTTGTTAGTTTTGGAATTCCGCTGATTCCAAGTACTCTACTTTATACCTACTATTTCGTCTTGTTTTTGGTTTCTAGTCTTATTTTACCATCTCCATCATCGCACATAGGAATGTAGAGAGTAACACTAATATTCCCCATAAATGCTTATTAGTAGGTATATTGAAGTCAGACTGCTGGAGAAGCTCACTATTTATCAGTAGACACTATTGTGCTGTCGTTAACAGTTTTATTGCTCTCTCCAGCTCTGAAGTTTGCTTGATCTCTTCACTCTGATGACATTTCTTTGCAATGACACATTTGTTTCGTAAAACCAATTGACGAAAGATGCATAGTTCTCGTCAATTTATTTATTTGAGTTTGACTTGTGCTAATCGTATATACTCCTTTTAGTTGCGAGGTAGTGGAAGTGTAGTTACCTATCATTAAAAAAATCTAGTGTCCTGACAACTAGTTATCATTTGGAGCAGCAAATTGCTTTGTCGTTTCATGCTTGACTAGTTACTCATCTTCCTGAAACTGTCGGTCTTTTAGCTTGAGACTGGTTGATCCTTAAACCGTGAAAGCTGAAAAATGATTCAATATATCATCAGTTCTCATTCTCTTGTTTGGTAGGGAAATTGTTTTTTTCGATTGGTATGAACCAGAAGTAAGATGTTAAATTCATGATGGATATTTTTCATACAGTGCTTGAACCTCCACTATGGAGAAGAATATATCTTCTATCAGTTTTATCCTTTCCGGAATTTACTTGCTTCAATAATTGTGTCAGGGTGATGATGGGAAACTATTATTAACAAATTTCGTGGATGCTTTTGCTTTCTGTTTTGCAGGCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCATTACTATTCCCCTTCTTTTGATGGGGTGGTTGTTGGTACAGAAGATGTGCTCATAACACCGTTTACTTGTGATAGAACTGGTTCTG</genome_strand>
        <mrna_strand>CCGAATTGAATCTTGATGTTCTGAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCATTACTATTCCCCTTCTTTTGATGGGGTGGTTGTTGGTACAGAAGATGTGCTCATAACACCGTTTACTTGGGATAAAACTGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326751" ref_strand="+" ref_description="SGN-U326751        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | pfkB-type carbohydrate kinase family protein, contains Pfam profile: PF00294 pfkB family carbohydrate kinase | chr3:20039102-20040964 FORWARD | Aliases: F24B22.50(evalue: 1e-56, score=216) genbank/nr: gi|15232415|ref|NP_190977.1| pfkB type carbohydrate kinase protein family [Arabidopsis thaliana] gi|11357296|pir||T47568 fructokinase-like protein - Arabidopsis thaliana gi|6822055|emb|CAB70983.1| fructokinase-like protein [Arabidopsis thaliana] gi|20260524|gb|AAM13160.1| fructokinase-like protein [Arabidopsis thaliana] gi|22136278|gb|AAM91217.1| fructokinase-like protein [Arabidopsis thaliana](evalue: 1e-54, score=216)">
      <seq>acatagcaaaaacaccatggcaacaatacattttcttcctcaatctcttcctcatcatcattctcacaattcactaaaccccaccattttcttctcctcctccaaatttccttacagaacaaatccacccaagtccaccaccaatgaccaccccaccactacccaagaaccccctaccccctctcgccgtggccgtaaaaaatcatccacccccacaacttcaaaaaaatcaagaaccccaaaagattcaaactttgatatcaacattgcagaatccaacacccaaatggaagaaattgatgattatgatgatggggttgattttccatacccaaacccacctttggtctgttgttttggtgcagcgcagaaggagtttgtgccaacagtgagagtatcacccgagcaaatggataaagataagtattcagagtggaaaatgttgcagtggaatccacctgagtttgttagagctcctggtggacctccatctaatgttgctatatctcatgttaggcttggtggtagagctgcatttatggggaaagttgggagtgatgagttaggacaagaaatggttttgttaatgaataaagagaaagtgcaaacaagggctgtcaaatttagtgatagtatgaggactggatgtagttatatggaaattaagtttaaagatgggaaaatgagggtggagaaagttcagactctgctgangatcactgcttagctccgaattgaatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="74120" stop="72775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73820" g_stop="73075" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U326751" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73820" e_stop="73075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAGCAAAAACACCATGGCAACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAAGTGCAAACAAGGGCTGTCAAATTTAGTGATAGTATGAGGACTGGATGTAGTTATATGGAAATTAAGTTTAAAGATGGGAAAATGAGGGTGGAGAAAGTTCAAGACTCTGCTGAGGATTCACTGCTTAGCTCCGAATTGAATCTTG</genome_strand>
        <mrna_strand>ACATAGCAAAAACACCATGGCAACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAAGTGCAAACAAGGGCTGTCAAATTTAGTGATAGTATGAGGACTGGATGTAGTTATATGGAAATTAAGTTTAAAGATGGGAAAATGAGGGTGGAGAAAGTTC-AGACTCTGCTGANGA-TCACTGCTTAGCTCCGAATTGAATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324072" ref_strand="+" ref_description="SGN-U324072        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | legume lectin family protein, contains Pfam domain, PF00139: Legume lectins beta domain | chr5:32831-34325 FORWARD | Aliases: F7J8.70, F7J8_70(evalue: 6e-46, score=182) genbank/nr: Concanavalin(evalue: 4e-54, score=215)">
      <seq>aaagagtaaaatcttattcaattttcacaaccttcaaagccaaatccaccactccccatcaccccccaccccccccatcactcaccaacctctgttacccatttccccaagcaattcccctctactcctttctcaatactcatcacaaaccctagaaattctttgagataaaatacctcaaaatcatataaaaatttaatctttcttgaaattctatacatgggttcatttaagaagaaatcttgataagtcccagttgaaaaaagagtacaaagtttacagctttctatagctaaagttgagccaagatcaagaatgggtactttgtcagcttccaggtatcttatggtgttgtttatcttctgtttttacttcagaactatccaatctgaggagaaaatgtcatttggttttggagattttggtaaagattcaaactttgagtctcagattgcactttatggtgatgctaaggttgttaatggtggtatacaaatgagtggttcaatgggttttagtgctggaagaatcttgaacaagaaaccctttaagctaattgatggaaatccaagaaaaatggtgtctttttcattgcattttgtgttttcattgtcaagagaaaatggggatggatttgcttttgtgatggtacctattggatatccttttgatgtgtttgatggtggctcatttgggctattgggtaatagaaaaatgaagtttcttgctgtagaatttgatacatttatggatgagaaatatggtgatgtgaatgataaccatgttggtgttgatttaagcagctttatatctgtgaaagtgagtaatgttagttctgttaaattggggctaatgaatagtggtgaaaagatgcaatcttggattgattatgaagcaagttcaaagagattagaaatcaggttgagcaaattaggtgacataaagccagttgatacattactttcttgccctattgatatgtcacaaatgtggaaagaggatgaattgtttgtggggttaagttcttcaagtgggaattccactcagaaatgcaatatctattcattgagctttaacacaaggactgcacctcattggatgcactcagaaccattagatccacaagcatttgttgagaaaaaagaagagatgaaagttcatagcagaagtgattgtgctttgaggattcttggtgcattgcttttcggtacgggatgtggagcattaggggcattagttgttgtgattgtgtggactgtgttagggagtagaaggccagtggcaccagaggatcatcctgcagtaatggaacttcataagaaggaattcgacgagtataaaaagttcatagtagttgtagataaagctatggaagatggtaaggttaagaattaggtaaaacttgattgaagtgggaatttagttttgttggttatgtaaaaatcatctttgttaagttttgtgctttttgttcttgttatgttgtgtagctgtaatttaatgatttactattcaaagtgtactaattgctcagtatggtcattaaaatacagcttcagattggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="79161" stop="76989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78861" g_stop="77287" g_length="1575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1575" r_length="1575" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U324072" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78861" e_stop="77287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTAAAATCTTATTCAATTTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCACTCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAGCTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTACTTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATTGTTTGTGGGGTTAAGTTCTTCAAGTGGGAATTCCACTCAGAAATGCAATATCTATTCATTGAGCTTTAACACAAGGACTGCACCTCATTGGATGCACTCAGAACCATTAGATCCACAAGCATTTGTTGAGAAAAAAGAAGAGATGAAAGTTCATAGCAGAAGTGATTGTGCTTTGAGGATTCTTGGTGCATTGCTTTTCGGTACGGGATGTGGAGCATTAGGGGCATTAGTTGTTGTGATTGTGTGGACTGTGTTAGGGAGTAGAAGGCCAGTGGCACCAGAGGATCATCCTGCAGTAATGGAACTTCATAAGAAGGAATTCGACGAGTATAAAAAGTTCATAGTAGTTGTAGATAAAGCTATGGAAGATGGTAAGGTTAAGAATTAGGTAAAACTTGATTGAAGTGGGAATTTAGTTTTGTTGGTTATGTAAAAATCATCTTTGTTAAGTTTTGTGCTTTTTGTTCTTGTTATGTTGTGTAGCTGTAATTTAATGATTTACTATTCAAAGTGTACTAATTGCTCAGTATGGTCATTAAAATACAGCTTCAGATTGGTAGACACAAGT</genome_strand>
        <mrna_strand>AAAGAGTAAAATCTTATTCAATTTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCACTCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAGCTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTACTTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATTGTTTGTGGGGTTAAGTTCTTCAAGTGGGAATTCCACTCAGAAATGCAATATCTATTCATTGAGCTTTAACACAAGGACTGCACCTCATTGGATGCACTCAGAACCATTAGATCCACAAGCATTTGTTGAGAAAAAAGAAGAGATGAAAGTTCATAGCAGAAGTGATTGTGCTTTGAGGATTCTTGGTGCATTGCTTTTCGGTACGGGATGTGGAGCATTAGGGGCATTAGTTGTTGTGATTGTGTGGACTGTGTTAGGGAGTAGAAGGCCAGTGGCACCAGAGGATCATCCTGCAGTAATGGAACTTCATAAGAAGGAATTCGACGAGTATAAAAAGTTCATAGTAGTTGTAGATAAAGCTATGGAAGATGGTAAGGTTAAGAATTAGGTAAAACTTGATTGAAGTGGGAATTTAGTTTTGTTGGTTATGTAAAAATCATCTTTGTTAAGTTTTGTGCTTTTTGTTCTTGTTATGTTGTGTAGCTGTAATTTAATGATTTACTATTCAAAGTGTACTAATTGCTCAGTATGGTCATTAAAATACAGCTTCAGATTGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323403" ref_strand="+" ref_description="SGN-U323403        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>cacagttaacttgggtatcgaactgctgcaattttgatggagtatactgttgctgaagaatgaacattcgggtgcagatcaaatgtctgtaaagctacttgaagttatatgcatgaatgtgtcaaataaaagaggatgcagctctcataaatggaagttgtcttgtattatttttccttgtggatgaacatactcgtgtttttttctctttgtaggctgtattcgaagcctgtcaatctgttatgaaattagttgcaagttcttggagtttaatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="90453" stop="89577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90153" g_stop="89868" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U323403" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90153" e_stop="89868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTATCATCCTAA</genome_strand>
        <mrna_strand>CACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U323402" ref_strand="+" ref_description="SGN-U323402        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | KOW domain-containing transcription factor family protein, ; est match | chr3:2825290-2826886 REVERSE | Aliases: F3L24.8(evalue: 1e-100, score=363) genbank/nr: gi|18398425|ref|NP_566346.1| expressed protein [Arabidopsis thaliana] gi|15146210|gb|AAK83588.1| AT3g09210/F3L24_8 [Arabidopsis thaliana] gi|22136582|gb|AAM91077.1| AT3g09210/F3L24_8 [Arabidopsis thaliana](evalue: 1e-98, score=363)">
      <seq>gaagagaatttgctaacagctaaagagagaaggcaaatgagaaatgcgagaagagagagtaaaacaggttacagttggagagaagaagtagaggaaaagcttatcaagaaacctaagaagcaatacaagtcctggactgaagagcttaatcttgataaccttgctaaattgggtcctcaatggtgggttgttagagtttctagagttaatggtcatgaaactgctgaacggatggctcgtgctcttgctaggaacttccctgatattgattttcaggtatacattccatctgtacaagtcaaaaggaaattaaaaaatggaacactttcaattaaaccaaaaccccttttcccaggatgtgtgtttctgagatgtgtactgaacaaggaaatacatgatttcattcgagaatgtactggaattggaggttttgttggatccaaggttggaaatacaaaacggcagatcaacaaacccagacctgttgatgaggatgacctggaggccatattcaaacaagcgaaggaagagcaagagaaagctgatcaagcttttgaagaagaggaacaaggagaaggaggtttagattccaagctgacaaaaaactctagtatagctacccttgacgacaaagttgtgcccaaaaaacgaggaaggcaatctaaaaaagcttcagacctgcttgcaggtgatgcgttgagaggatcagatgataaatctttaataccagggtcaactattgaagttgtgtccggagcctttgctggattttcagggattctcaagaaggttgatagcaaggcaggattggcaactgttggattttctctgtttggcaaggagactctagctgatatagatgtcaaagaaattgtagcagaggttggctgacctgtttaggctgtggatacttttttgtctgagatgggacaagcaaaatattatgatgagtcaacagtaggcagcaggatattagagcaaaggtctacaagtgattaaagctaaggcatgttttaagctaatttgcctaggggattccacaatcaacttgggtatcgaactgctgcaattttgatggagtatactgttgctgaagaatgaacattcgggtgcagatcaaatgtctgtaaagctacttgaagttatgcatgaatgtgtcaaataaaagaggatgagaaatcttcttcgcagctctcataaattgaagttgtcgtgtattatttttccttgtggatgaacatactcgtgtttttttctctttgtaggctgtattcgaagtctgtcaatctgttaagaaattagttgcaagttctcggagtttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="96253" stop="89581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95953" g_stop="95678" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95677" i_stop="94478" i_length="1200">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94477" g_stop="94299" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="455" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94298" i_stop="93507" i_length="792">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.649" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93506" g_stop="93152" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="810" r_length="355" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93151" i_stop="92780" i_length="372">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92779" g_stop="92663" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="927" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92662" i_stop="90270" i_length="2393">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90269" g_stop="89882" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="928" r_stop="1322" r_length="395" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1323" polyA_stop="1343"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U323402" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>1315</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95953" e_stop="95678"/>
          <exon e_start="94477" e_stop="94299"/>
          <exon e_start="93506" e_stop="93152"/>
          <exon e_start="92779" e_stop="92663"/>
          <exon e_start="90269" e_stop="89882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGAATTTGCTAACAGCTAAAGAGAGAAGGCAAATGAGAAATGAGAGAAGAGAGAGTAAAACAGGTTACAATTGGAGAGAAGAAGTAGAGGAAAAGCTTATTAAGAAACCTAAGAAGCAATACAAGTCCTGGACTGAAGAGCTTAATCTTGATAACCTTGCTAAATTGGGTCCTCAATGGTGGGTTGTTAGAGTTTCTAGAGTTAATGGTCATGAAACTGCTGAACGGATGGCTCGTGCTCTTGCTAGGAACTTTCCTGATATTGATTTTCAGGTAATAAAGATTTGTGCTTTATTGTTTGGTTTGATGGTGAAGTTCTTAATTTGGTGGTTTTGTAATTACTCTTGTGCATTACTCCTGAAATTAGAAAATCAACTCCTGAATGCATTCGAGTTTGATGTCAATATCGAAAAGGTCAAGCTGTCTATTTAGTTTCCACCATTTGATAGGGACCATTAGAATTTAGTTTGCACATAATTTAGCTCCAACTAGCAAACTAGCTTAGTTCAATCATGAAAAACATTCATTCCATTAACATGAATATGAAGAATGTAAAATGTTCAAGTATGATGAGTTATGGATGTTCATGAAAATAGGGATGTCATAGTAATCCAGCAAGAATGCGTTTAGAGTATACAACAACTACGCCTCTGTCCCAAACAAGTTGGCTCCGCATATGATTGCTCACTGAACATGTTTCTCCATTTAAGCTTTAACTCATGCTTCATTATACGGTGCGTTTAGAGGATAGTTGTGGAAAAATATAGTTTGGAGGAAGAGAGTAGGAACTAGCAAGGCGAGTGAACTATAGGCCTTAGAAACAGTATTCATTTTTTCTTTGGATAATTTTGGTGCCCGAGCCAGCTTGTAAGCACCTCAGTTAAGCCACCCACCATTACCTATAACTTCCAACCAACACAGATACTGGTATGACCTACCATTTCCCCCCCATTACAGTATTCATTTTTACAAGTAGACGAGAGCATAAGAGAAGTTCGTGAAGCCCTCATAGCAGTATATATATAGTTGCAGAGCTTGCATAATTTCCAGTTACCATGGAACTTCCAGATCATTTCTGTTGTATCAGAATGGAAGTCGTGGACCTGAAGATAACCATATTATAAAGTATAAACAGCCGTCTATCAGTTTTTGTATTGCTGTAAAAATTTTCTTTAGAGAAAATTTTTCCTCCAATACTCGTCTCAGTTTTCACTATTGATTTCCTTTGCTTGAAATCATAGTCTTTGTATTGTTTGTGTGTGTCTGTGTTTGTGGTGGTAGGGGGAGTGTTCAGTTTGCTTGCAATCATGATTGATTCTGCTCCAACCAATGTGGGCTTCCCTATTAGTTAATTTTAGGACAGTTGGAGGTTGGATTACCTCGAAATGCAAGGGTATGAAAAGTATTTAACTAATTTAGGAATTGATTTTTCAATATTTTTTGAGTTTTGACTCACTGTAAAAGTTTCTGCAGGTATACATTCCATCCGTACAAGTCAAAAGGAAATTAAAAAATGGAACACTTTCAATTAAGCCAAAACCCCTTTTCCCAGGATGTGTGTTTCTGAGATGTGTACTGAACAAGGAAATACATGATTTCATTCGAGAATGTACTGGAATTGGAGGCTTTGTTGGATCCAAGGTTGGAAATACGTAAGCATTCATTGTTGTCCCTATCACAAATAACAAGTTTACGAAGATTACTTCTTATCATCTGTGGTGGACAGAGTTACCCAATACATGTGTTGGTAGGAGGTAGCAGGTACCCTTGGAAATAGTCGATGTGTGTGCAAGTTGGCTCGGATAACATGGTTATAAAGAAAGTTTACAAGTTTTACTCAGTCAAGAAAGAGGAGGTCTTTGATTTGTTTGATATGTCAATGCAATTTTCTTTGACCTCTGGGAACTCTGTCTTTTAAACGAACAAAGACCCATGGTGTATGTGTCTGACCCGATGGAACATATGTCAATTAATATATTAACATAAAATGAGTGGAATATCCTAAGCTAACTTGGCCTAAGATTGGAATTTTTCATTTTAAAATCACTTGCACTCTAATTGTGTATAGCTTATAAAATGTGTTGGCCTAAGTTCCGAATTTTTTTACTTAATATTCACTCCCTATCTAATTATGTGTAGCTTGTAAATATGTTCATTCAGTCAGCTACTATAAGGTCTTTCTGCGAGATTAGTGATGAATGCTATTTCTGCTTGACAAAATTTCAGAATACTTATCAAATTTATGCTAATAGGTCAAGTGAATTTTGCAAGGATATCTAATTACTAGCTGCCTTTAGTTGATATCTACCATTTGATCTCTCTTGATATGACTTTTCTGTTACTTGTGTCTACGTACCCATTTTATTATTTAAAGGGATAACTTACAACATACCTGAGGTCATTTTTGATTTTTCTCAGTTGCTAAAAGTGTAGAACATTTGCAGAAAACGGCAGATCAACAAACCCAGACCTGTTGATGAGGATGACCTGGAGGCCATATTCAAACAAGCGAAGGAAGAGCAAGAGAAAGCTGATCAAGCTTTTGAAGAAGAGGAACAAGGAGAAGGAGGTTTAGATTCCAAGCTGACAAAAAACTCTAGTATAGCTACCCTTGACGACAAAGCTGTGCCCAAAAAACGAGGAAGGCAATCTAAAAAAGCTTCAGACCTGCTTGCAGTTGATGCGTTGAGAGGATCAGATGATAAATCTTTAATACCAGGGTCAACTATTGAAGTTGTGTCCGGAGCCTTTGCTGGATTTTCAGGGATTCTCAAGAAGGTTGATAGCAAGGCAGGATTGGTATGCCTAGAACACTATCCTTGTGTTATTTCGGGGTAGGGGAGAGTGGGCAAGGGAAAGCATAGTTATAAAAGTCCTGGAGCTCAGCCAAAAAAAGAGAAAAATTTGAGTTATTAACAGCTTATGTCTTCAATTTTTCCTAACATCACGCTCCCCCGCCCTCTTGGGCCTCTTCCCCCCTTGCAATGCAAAAAAGATAATACTTTGGTTATCTCCTTTATCCTGTACAGTTTGAAAGCTTATTGGTGCTAATTGCTCTCGCTACACAGTATCTTCCATTTTCTGTATGAGACTGTTCTTCTGTTACTTCACCCAAGCCAACTGAAAAATCAAAGTTTGTTCTTGACATTTAATGTGGAATTTTTCTTGCAGGCAACTGTTGGATTTTCTCTGTTTGGCAAGGAGACTCTAGCTGATATAGATGTCAAAGAAATTGTAGCAGAGGTTGGCTGACCTGTTTAGGCTGTGGATACTTTTTTGTCTGAGATGGTAAGTCTTGCACTGAGTGATCACTATTCTAAAAAATATTGGTGTCCTCACTCAAGGTTCACATTGTATGTATGTAGAAGATGCATCTGCTCACTGAAATAAGATGTGATGTCTTACCAGGATAATGGTGTACCTAGGGAATACCAGGCTAGTTTAAAATAAGTAGTTGTTATCCAAATGTTCGCGTGATTTCGTCTTTTCTAATTCTTCTCCAAACATTCTTTTGGCCCCATGCTGATATATTTTACACTGTATGCTTTAATGTTTCGTATGTGTGGCATCCTTCCTCATTTGATAATATAGCCATGTAGCACAAAGATTGGCTGGCAGTCTTTTTGGGCCAGAGAATGCAAATGCGTGATGGAGATTATATGTTAAGCCCAAGACTAATAATTTATTAACATGACTGTCAAATATATGAACAAAGAAAAATAGAAAACTAATTATGATAAAGTGAAATATCAATTGTTTAGTGTCGTCTAGGTTCATTGGCAAGGAAAAATATGTATTAAACTTGATGACGACACTGAAACCGCACATTGAGTGAGGTAAATCGCTCAACATGTTTTGAGCCTCACTTCAGGGCTTAAGCACACATATGATGACACTGATGTTATGTTATCCAGAAGCAGGACAAGTCAGCTTTATAAGGATGGTCTTACTCATTTTTGAAGTTATTTTGGGGTTAAGCGTCAATTGGAGGAGGATTTATATTTTCCCTATTAAAGAAGTGGTCCAAATGGAGGAGCTGGCTGGGATTTTGGGGTGGAAGATTGAATAGCTTCCCACAACCTACTTAGGCATGCCTCTGGCCAACAAGCACTACGAGTTAGTTATCTAAGATGAGATTATCGAGAAGACAGACATGGAATTCTCAAAGTGGAAGTAGGAATTAGATTGTTTTTGATGAATGCAGTATTAGATTCCTTACATACTTGTGTGATGTCTATGTTTCCTATTCCAGTTGGGCTGGTAGATAAACTTGACAAGCTCAGAAGGGACTTTCTATGGAATGGAAATGAGGAGGATAAGGGTTTTCATTTTGTGAAATGGGATGATTTCGACTTGATAAGAATCAGGGGGTCTTGGTATCAGAAATCTGAAATTACACAATAGTTGTCTATTGATGAAGTATTTATGGAAGGAGGTAATCATGAAGAAATATGGACAGACAAGTGAATGATGCACCGATGAAGTGGTCAACACTTATAGTCTTAACAAACATGTTGTCATAAGGTGGGTGATGGCACAAAAACTATGTTCAGAAAGGAATCCCGGAACGGGCAAGTGCCTTTGATGACTATTTTCCCGGCTTTATTTTCCATATGCAGCAACCCTGAAGCGCTTCGCCACTGTGTCAGACTCTTGGACTCCTCAAGGGTTTAATATATATATGCTTCAAAAGGAACCTAAATGACTGGAAAATTGATAGGGTGGTTGATCTTTTGTAGGAAGTTGATATGTTGAGAGACACTTCCCAGCCCCAAATGCAATCAAGTAGAAACATACCAATGACGGGAGGTTCTCTATTTAACAGAGTGTATAAATTGGAAGTTTTGGGGCAACCAGGAGACAGAACAGGTCCGTGGACAAAGGTATAAAAAAGTCTAGTGCCATCCAAAATCAAGTGCTTCACTTGGTTAGTGACAGAAGAGCCTGCTTCACTGTTATGAGGCTGCAGAGACCAGCAGTCATTTATTTCTGCACTGTAAATGGTCCCTTTTCTTCAGCCTCGCCGGTAACAGTTGGACGATGTCAGAACGCACATCAGATCTTCTAAGCTGCTGGATCAGGAGAGGAAGTAGCATGTCCCCGAAGAGATGGTGTAGAGTAGTTCCATCATGTATTTGGTGGACAGTGTGGAATGAAAGAAATGGGAGGTGTTTTGAGGATAGATTTAATACTTTGCAGAAAATTAAGTGGAATTGTATTGTAAATTTTTATTTTTGGTGTAAAGAAGCAAGTGTAGAGGATACAATCTTCTAGACTCTATAATTAGCCCTTGGTTCATAGCTCTCTGTTGATAACTTTTTGGAGATCTGTATGTTGAGAAGTACAACTTACCAGTTTTTCTTAGAAAAAGAGATGAATCTCTATAGAAAAATGACAGTACAAGCTGGTTGAACTTCCAAATGGTAAAATATATAGTATACCTACCAAAAAACTACTTATAAGACTATAATAGTCCTCAGATGTTGCTTTAGAGCTCTCTAACTTTTGAAGATTTCTCCATCTTGCCATAAAACATATACAAAGGGCCTATATTTCTTTCTCAACCCCAATTTCCTCTATCGATGTTCTTTGATGCAGTATATTTACTTATCTTCCATCATATATGTTTTGTTGTTTCATGATGATTTCTATTGCATTGCGACATTTGGATTTGACTCCAGGGACAAGCAAAATCTTATGATGAGTCAACAGTAGGCAGCAGGATATTAGGGCAAAGGTCTGCAAGTGATTAAAGCTAAGGCATGTTTTAAGCTAATTTGCCTAGGGGATTTTATTCCACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAAT-AAA-A-GA-G-G--A------T-GCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTA</genome_strand>
        <mrna_strand>GAAGAGAATTTGCTAACAGCTAAAGAGAGAAGGCAAATGAGAAATGCGAGAAGAGAGAGTAAAACAGGTTACAGTTGGAGAGAAGAAGTAGAGGAAAAGCTTATCAAGAAACCTAAGAAGCAATACAAGTCCTGGACTGAAGAGCTTAATCTTGATAACCTTGCTAAATTGGGTCCTCAATGGTGGGTTGTTAGAGTTTCTAGAGTTAATGGTCATGAAACTGCTGAACGGATGGCTCGTGCTCTTGCTAGGAACTTCCCTGATATTGATTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATTCCATCTGTACAAGTCAAAAGGAAATTAAAAAATGGAACACTTTCAATTAAACCAAAACCCCTTTTCCCAGGATGTGTGTTTCTGAGATGTGTACTGAACAAGGAAATACATGATTTCATTCGAGAATGTACTGGAATTGGAGGTTTTGTTGGATCCAAGGTTGGAAATAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGGCAGATCAACAAACCCAGACCTGTTGATGAGGATGACCTGGAGGCCATATTCAAACAAGCGAAGGAAGAGCAAGAGAAAGCTGATCAAGCTTTTGAAGAAGAGGAACAAGGAGAAGGAGGTTTAGATTCCAAGCTGACAAAAAACTCTAGTATAGCTACCCTTGACGACAAAGTTGTGCCCAAAAAACGAGGAAGGCAATCTAAAAAAGCTTCAGACCTGCTTGCAGGTGATGCGTTGAGAGGATCAGATGATAAATCTTTAATACCAGGGTCAACTATTGAAGTTGTGTCCGGAGCCTTTGCTGGATTTTCAGGGATTCTCAAGAAGGTTGATAGCAAGGCAGGATTG....................................................................................................................................................................................................................................................................................................................................................................................GCAACTGTTGGATTTTCTCTGTTTGGCAAGGAGACTCTAGCTGATATAGATGTCAAAGAAATTGTAGCAGAGGTTGGCTGACCTGTTTAGGCTGTGGATACTTTTTTGTCTGAGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAAGCAAAATATTATGATGAGTCAACAGTAGGCAGCAGGATATTAGAGCAAAGGTCTACAAGTGATTAAAGCTAAGGCATGTTTTAAGCTAATTTGCCTAGGGG-----ATTCCACAATCAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAG-T-TATGCATGAATGTGTCAAATAAAAGAGGATGAGAAATCTTCTTCGCAGCTCTCATAAATTGAAGTTGTCGTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGTCTGTCAATCTGTTAAGAAATTAGTTGCAAGTTCTCGGAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U333347" ref_strand="+" ref_description="SGN-U333347        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>caaattttaagcccagttaaaaatatcagaagcttgaaggattagaagatctttgtgcaagaaatcgatgaatacttacaccgatgactatgacagttgactgaattcatcaaatttagttttacatagtaactgtccattcattagcaaaaaagtgcaagtgcactggattaggatttatttccataggattaacagctgcaggcctagccagtatattgattatatatagcttatgtctaagcatattaggggaatttgataaatatatttgacatgaccaagcttatagcaaatttgattatgagaaatatctgattattgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="105060" stop="106071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105360" g_stop="105375" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105376" i_stop="105460" i_length="85">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105461" g_stop="105773" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="329" r_length="313" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U333347" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105360" e_stop="105375"/>
          <exon e_start="105461" e_stop="105773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTTAAGCCCAGGTAACTTTTCAACCGTCTATTTTCTCCTTTTCAATTTGCAAAAAGCACAAACTGAAGATACAATTCCATGCCTTCATTTTTGCAGTTAAAAATATCAGAAGCTTGAAGGATTAGAAGATCTTTGTGCAAGAAATCGATGAATACTTACACCGATGACTATGACAGTTGACTGAATTCATCAAATTTAGTTTTACATAGTAACTGTCCATTCATTAGCAAAAAAGTGCAAGTGCACTGGATTAGGATTTATTTCCATAGGATTAACAGCTGCAGGCCTAGCCAGTATATTGATTATATATAGCTTATGTCTAAGCATATTAGGGGAATTTGATAAATATATTTGACATGACCAAGCTTATAGCAAATTTGATTATGAGAAATATCTGATTATTGTTATG</genome_strand>
        <mrna_strand>CAAATTTTAAGCCCAG.....................................................................................TTAAAAATATCAGAAGCTTGAAGGATTAGAAGATCTTTGTGCAAGAAATCGATGAATACTTACACCGATGACTATGACAGTTGACTGAATTCATCAAATTTAGTTTTACATAGTAACTGTCCATTCATTAGCAAAAAAGTGCAAGTGCACTGGATTAGGATTTATTTCCATAGGATTAACAGCTGCAGGCCTAGCCAGTATATTGATTATATATAGCTTATGTCTAAGCATATTAGGGGAATTTGATAAATATATTTGACATGACCAAGCTTATAGCAAATTTGATTATGAGAAATATCTGATTATTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316424" ref_strand="+" ref_description="SGN-U316424        Tomato 200607 #1 [27 ESTs aligned] arabidopsis/peptide: | Symbol: None | fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative, strong similarity to fructose-1,6-bisphosphatase (Brassica napus) GI:289367; identical to SP:P25851 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Arabidopsis thaliana}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase | chr3:20027891-20029726 FORWARD | Aliases: F24B22.10(evalue: 4e-175, score=611) genbank/nr: gi|4585576|gb|AAD25541.1| fructose-1,6-bisphosphatase precursor [Solanum tuberosum](evalue: 0, score=740)">
      <seq>gaacttgtaaactgagaaattttagtgatttcaagaatcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaacaagctggagttattgatgctgaacttaccatagtaatttcaagtatttcaatggcttgtaaacagattgcttctttggtccaaagagctggaatttctaaccttactggagttcaaggtgctgtcaatattcaaggagaagatcagaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatcttggagatgattccacgcttgacaatatagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcaggatactgcatgtactcaagctctgtgattttcgtactcaccttgggaaatggcgttttttcctttaacttggatccaatgtatggagaatttgttctgactcaagaaaatgtccaaataccaaagtctggaaagatctattcattcaatgaaggaaactaccagctctgggatgacaagttgaaaaaatatatcgatgacttgaaagaccctggtcctagtggcaagccttactctgcaaggtacattggtagtttggtaggtgacttccatagaactcttctatatggtggcatttatggttatcctagagacagaaagagcaagaatggaaagttgaggcttttgtacgaatgtgctcccatgagcttcattgtggaacaagctggtggcaaaggatccgatggtcaccaaagagttctcgatatccaaccaactgagatacatcaacgagttccattgtacattggaagcacagaagaagttgaaaaattggagaagtacttgtcttaattccaaaatcaagacgagactgtgaatttgtaatactcgaaagaaattcttttcacaagaagtctaggaaccaattgctaaagtcattatggttcaaagctttgcggtgattcaattcataaaacaatgtaaaggtttttccatatctaaaatctgtcatcctctttcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="109002" stop="105837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108702" g_stop="108242" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107505" g_stop="107281" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="686" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106986" g_stop="106480" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="1193" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106479" i_stop="106383" i_length="97">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106382" g_stop="106138" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1194" r_stop="1438" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1439" polyA_stop="1468"/>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U316424" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1438</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108702" e_stop="108242"/>
          <exon e_start="107505" e_stop="107281"/>
          <exon e_start="106986" e_stop="106480"/>
          <exon e_start="106382" e_stop="106138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTGTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAGGTAAAAACCCCAATAGCTAAGTTAAATCTGTAACCAACAAGTGAGTATATATATCAGTCAATTGATTTTGGTGTTTCTTTTGTTTCTAACTTTGCAGATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTCTTGAA</genome_strand>
        <mrna_strand>GAACTTGTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAG.................................................................................................ATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335664" ref_strand="+" ref_description="SGN-U335664        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative, strong similarity to fructose-1,6-bisphosphatase (Brassica napus) GI:289367; identical to SP:P25851 Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) {Arabidopsis thaliana}; contains Pfam profile PF00316: fructose-1,6-bisphosphatase | chr3:20027891-20029726 FORWARD | Aliases: F24B22.10(evalue: 7e-83, score=303) genbank/nr: gi|4585576|gb|AAD25541.1| fructose-1,6-bisphosphatase precursor [Solanum tuberosum](evalue: 3e-90, score=334)">
      <seq>tcctaagaaaatcacaatggcagcaacagcaacaacttcatatttaagtgctctagacaaaaagactccatttttatttgccttggacaaaaagactccatttttatgcccaaaaaacagcacaaagagaaggtcatttaatggaggagttaagtgcatggcaatagagacagcttcaggtgttacacaaaccaagaaaaagagtggctatgagttacaaactttaacaagttggctattgagacaagaaacttgatgttgtctctaatgaggttttctcgaattgtctaagatcaagtggaaggactgggattatagcatcagaagaagaggatgtacctgtggcagtggaagagagttactcaggcaactacattgtggtgtttgatcctcttgatggatcatcaaacattgatgctgctgtatctaccggttctatctttggaatatacagcccgaatgatgagtgcctagctgatcttggagatgattccacgcttgacaatatagagcaaaagtgcatcgtgaatgtatgtcaaccagggacaaaccttcttgcagcaggatactgcatgtactcaagctctgtgattttcgtactcaccttgggaaatggcgttttttcctttaacttggatccaatgtatggagaatttgttctgactcaagaaaatgtccaaataccaaagtctggaaagatctattcattcaatgaaagaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="108965" stop="106460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108665" g_stop="108421" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108420" i_stop="108269" i_length="152">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108268" g_stop="108242" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="272" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107505" g_stop="107281" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="497" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106986" g_stop="106760" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="724" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U335664" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108665" e_stop="108421"/>
          <exon e_start="108268" e_stop="108242"/>
          <exon e_start="107505" e_stop="107281"/>
          <exon e_start="106986" e_stop="106760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAGGTTTGTTTGTTACAATTCTTCTTATAAATAGCTCAATAGAAACATTAGTACTCTGTCCCTTATCATGTGAAGTTATTTAGATGAGTTTAACTTCTATATACTGACGATCCGAGCACTTAAAATATAACTAGTAATCTGAAAATATACTCATATAGGTCGTTTGGTAGAATGTATAAGAATAGTATTGAATAAGGTGTATTAGTAATGCTGGTAATAGTTATTTTTTTTATCCACTGTTTGGTTTGGTGTATTAAGGGTAGTTTTGTCTAGAGCCATACTTATACATGTATTAATAGCTCTTGTATTGCTAATATCGTGGTTTACTATGTATTAGTTATACACCCTATAATACTGAATAGGTTACTCATACATAAGTTGAAAAACCTACCAAGCAAAGGATTAAATAACACTAAAGTTAATACATGTGTTATTTTCTCTAATACATCCTATCAAATGACGAATTGTGTTCACTGTCAGTGTATATAAGTTAACTCCGATTGGATTTAAGTTACATACATTGATGGTGTGAAGAATTTTTACACTACCTGTTATGGAAGGTCCTTATTCTTTTTCCTTTTTTTTAAGGTTACCATATCAGGCTTACTGTGAAGAGTTAGTTTAATCTGCTTGTGTAAAATATCTATGGAATGTCAATGTGCATAATGTAGACATTCGTAGAACATTAATACACAAATGATCTTGGTTTCTGAAGGTTGATGTTTGATGGATTGAACAGGTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACGGTAATTACCAGACAAGATAACCTTCCTTTGCCTCTAAAAGAGAACTCTTAATAGCTAATGTAGTGTTCTGACTTGTGACAATGTGTTATCTTTGATACATAATGCACCGAGAAGTAGGATCATTCACTGCTATGCTTCTTATATCGGTTTGATGCTTTCAATAGTCAATTGGACCTCTGCTGCATGAATGTAACTTTTCCAGTGTGGTTGTGAGTTTTGGCATAAGCCAAAATCCGTTCATTATATGTAAATAGTTTAACGACCGTTTCACCAAATGTCTGTTGAATATTGCAGCTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTA</genome_strand>
        <mrna_strand>TCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGAC........................................................................................................................................................AAGAAACTTGATGTTGTCTCTAATGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG......................................................................................................................................................................................................................................................................................................CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAAGAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313954" ref_strand="+" ref_description="SGN-U313954        Tomato 200607 #1 [46 ESTs aligned] arabidopsis/peptide: AT3G54040.1 | Symbol: None | photoassimilate-responsive protein-related, contains weak similarity to mRNA inducible by sucrose and salicylic acid expressed in sugar-accumulating tobacco plants (GI:871487) (Nicotiana tabacum) | chr3:20024739-20026415 REVERSE | Aliases: F5K20.340 (evalue: 2e-37, score=152) genbank/nr: gi|10798750|dbj|BAB16427.1| NtEIG-E80 [Nicotiana tabacum](evalue: 3e-49, score=197)">
      <seq>agaaacatttctttctccattttttccccaacacaaaaaaaaagaaaaatttaaaaaaaaaatcaaaaatcacaacaaaataaaagagaaaacaaatggcctcatcaatgaaatcatctttgatccttttcttgacatgttcccttttccttcaggtcacttatgctgtgtataagactgaggtgaaatgtgagagtttgccaaatggtgattgtgcatttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaaaaacaccaaaagatgacttaattagtagtgaatatgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttctgatgatttgcttgagcctcaatttgtctccaaattatgtgcccctgcttgttatcaacaatgtcccaatattgttgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcttcattctaaatatttttgcaccttttcaaataaaaaatatataaataattgtttttttacaaacaattattgttgtttgtgaagatattgcacttaatgttttagttctttggggttgctgaaatttttctttgtactaattcttttgtcactgagaaattataaggattnnctctcttttacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="110635" stop="112689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110982" g_stop="111103" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="177" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111579" g_stop="111914" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="513" r_length="336" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112121" g_stop="112409" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="798" r_length="285" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U313954" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110982" e_stop="111103"/>
          <exon e_start="111579" e_stop="111914"/>
          <exon e_start="112121" e_stop="112409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGAGTAAGTTATTGATTTTCTTAATTAATCTTTATCAAAATAATGTGTTCAGTCGAATTCATGTGCATTAATCTTAATGTACATAAATAAATAAAGAATTAAAAGAATAATGATTTCCTTAATTAATCATCGTAACAATAATGTATTTATTTAAATTTCGTATTTGTTCATGCACATTTAATATGCATGAACATAGAATTCAGAATTATTGATTTCTTAATAATAAAAATATGTCAATCAATCTCCTTTCATGCACCATTCATATAAAACTTTCTTTTTAATTAGTCTTAAAAAAATATGTCATATTTTTATAATTAAAAATGATTTATCTTCAAGGTTTCATTTTTAACCTTACTGAAATGGTTTATAGTCACACAGATTTCCTCAAATCTTTATATGTTCAATTAAATTGTAGTGCCACATAAATTGAAACAGAATGAACGAGTATATCTAATTCTTCTCTTTCTAATTTTTGTAGCTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGAAT</genome_strand>
        <mrna_strand>AAAAAATCAAAAAT-CACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGTCCCAATATTGTTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTCAAATAAAAA-ATATATAAATAATTGTTTTTTTACAAACAA--TTATTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAGTTCTTTGGGGTTGCTGAAATTTTTCTTTGTACTAATTCTTTTGTCACTGAGAAATT-ATAAGGATTNNCTCTCTTTTACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313953" ref_strand="-" ref_description="SGN-U313953        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT3G54040.1 | Symbol: None | photoassimilate-responsive protein-related, contains weak similarity to mRNA inducible by sucrose and salicylic acid expressed in sugar-accumulating tobacco plants (GI:871487) (Nicotiana tabacum) | chr3:20024739-20026415 REVERSE | Aliases: F5K20.340 (evalue: 2e-21, score=98.6) genbank/nr: gi|10798750|dbj|BAB16427.1| NtEIG-E80 [Nicotiana tabacum](evalue: 2e-28, score=127)">
      <seq>tgaatgcaagacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcttttgatgatttgcttgagcctcaatttgtctccaaattatgggcccctgcttgttatcaacaatgtcccaaaaatggtgacctttacttcaacttggctgtcgctgaaggagcatacttgccagacctatgcaacaagaacaataagttgaagagcagtggtgctgctgaaaaaggtgttgaagatcctgctccatttcctttttcattttaaaaaattttgccccttttcaaataaaaaaaatataaataattgtttttttacaaacaattattgttgtttgtgaaaaaattgcccttaaagttttaattttttgggtttgctgaaatttttctttggactaattcttttgtccctgagaatttaataaagattttttttctttttcaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="111400" stop="135408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111700" g_stop="111914" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206">
            <donor d_prob="0.996" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112121" g_stop="112407" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="499" r_length="284" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112408" i_stop="113459" i_length="1052">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.65"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113460" g_stop="113502" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="542" r_length="43" r_score="0.651"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U313953" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313953" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111700" e_stop="111914"/>
          <exon e_start="112121" e_stop="112407"/>
          <exon e_start="113460" e_stop="113502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAGGTAAATCTAACAATTTTACGATTCAGTTCAGATATATCACTCATTAAAAAAACATGATGCATATATATACTTCTGTTGTCTAATAAATGACGCATATTACAAAATATGCATAATTTGTTAGACTGAAAATATATATGCATCACTTTTTTTTTAATCTATATAACCGTCTTAATTATTTCGACATTTTTGCATTTATTTATGTGTAGGAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGAATTTGTTGTTTAATTGTTATTGTTTGATTTTTTTTAATTGTTGAATGAGTGAATAGAGATTTTATGGAAATAATATAATTGACTTAACAAGTTTCAAATTTTAAATCTTAAACATTATTACACAACCAAAAAAAAAAAGCCATAAGTAATTATGTACATGGCTAGACTTCTTACAACAATATGAAAGATAGAAAGAAGGCATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAATTCTAAACTTGATTTTAAATTTCAACTTTACCCTTCAACTTTCATAATGCACGAACATGCATTTTAACTATCCAACTTTTAAATAAATAAACACATGAGTCCTACATGACACAATACCCATAGGACACCATGTAGGATAAAAAATGACATGTAGGACACGTGTGTCTATTTGTTCAACTTCATAAAAATTTAACTATCTACTTGTGGACACTCAAAGTTGAAGATCCTACATGTAATTCGAAACCAAGTTAAAGGACATATTTATGTATTACGCCTAGAAAGAATAACAAATTAACAATTAATTATGATGATTGAGAGAGCCACAATACACATTAGATTCTTTTAAGGTATAAGGCATATGAGTTTTCTCATTTATATATATACTAGATAAATAATGCCCGTGCTGCGCACAGGCCTAACAATTTTAATAGATTATTTAAACTGTATAATCTTTTGTTATGATCTCATAAATACATAAATAATTTCAACTTCGATAATACTATCAAATAAAACGAAGAATTTCATTTTGTATTCGATATATTCAAAAAAAATTCATTTTGTATTTGATATATCCAACGGATGCTCATGCCTCTCAATGACGACCATGTATATATCCATTCAACATGAATTCAGTAGCGCACCTTATGTTGTGTAGAATTTAGTGGCACACACTTGTGTATGTTATATCTAACAGAGTTATATCTTCTAATGAGCTTACAATAATTTAACACAACCAAGATAACTTCAGCAAAATCTTGTGTTTCAATAGTTACTACTTGAAAAAAGAAAAGAAAAAAAAATAGTTACTACATAAAAAGAGATGA</genome_strand>
        <mrna_strand>TGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCTTTTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGGGCCCCTGCTTGTTATCAACAATGTCCCAAAAATGGTGACCTTTACTTCAACTTGGCTGTCGCTGAAG..............................................................................................................................................................................................................GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGCAGTGGTGCTGCTGAAAAAGGTGTTGAAGATCCTGCTCCATTTCCTTTTTCATTTTAAAAAATTTTGCCCCTTTTCAAATAAAAA-AAATATAAATAATTGTTTTTTTACAAACAA--TTATTGTTGTTTGTGAAAAAATTGCCCTTAAAGTTTTAATTTTTTGGGTTTGCTGAAATTTTTCTTTGGACTAATTCTTTTGTCCCTGAGAATTTAATAAAGATTTTTTTTCTTTTTCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U313956" ref_strand="+" ref_description="SGN-U313956        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT3G54040.1 | Symbol: None | photoassimilate-responsive protein-related, contains weak similarity to mRNA inducible by sucrose and salicylic acid expressed in sugar-accumulating tobacco plants (GI:871487) (Nicotiana tabacum) | chr3:20024739-20026415 REVERSE | Aliases: F5K20.340 (evalue: 2e-37, score=152) genbank/nr: gi|10798750|dbj|BAB16427.1| NtEIG-E80 [Nicotiana tabacum](evalue: 4e-49, score=197)">
      <seq>tcttttttccaacaacataaaaaaaatatgcaaaaaaaaatcaaattcccaactaaacaaaagagaaaaacaagaaaaataaatgggttcatcaatgaaatcatctttgatccttttttttacatgttcccttttcctccaagtcgcttatgccgtatataaaactgaggtaaaatgtgagagtttaccaaatagtgattgtgcctttgcaatttcatcaacaggaaaaaggtgtgtattagaaaaagcaacaaaaccaaaagatgacttaattaatagtgaatacatatgcaaaacatcagaagttatggttcaaaacatgaaggaacacattgaaacagatgaatgtattgaatcttgtggtcttaatagaaatttctttggaatttcatctgatgatttgcttgagcctcaatttgtttccaagttatgtgcccctgcttgttatcaacaatgccccaatattgttgacctttacttcaacttggctgctggtgaaggagcatacttgccagacatatgcaacaagaacaagaaattgaagagtagtggtgctgctgaagatggtgttgatgctcctgctccatctccttcatttttctaaaattatttttacaccttattataaaaatatatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="+" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="120387" stop="122323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120687" g_stop="120851" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120852" i_stop="121344" i_length="493">
            <donor d_prob="0.685" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121345" g_stop="121680" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="500" r_length="336" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121681" i_stop="121884" i_length="204">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121885" g_stop="122025" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="641" r_length="141" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="+" ref_id="SGN-U313956" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120687" e_stop="120851"/>
          <exon e_start="121345" e_stop="121680"/>
          <exon e_start="121885" e_stop="122025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTTCCAACAACAAAAAAAAAATATACAAAAAAATAATCAAATTCCCAACTAAACAAAAGAGAAAAACAAGAAAAATAAATGGGTTCATCAATGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCGGTATATAAAAGTGAGTTAGTTGATTTCTTTACTAATCGTGAAAATAATATATTTAGTTGAATCTCATCAATTTTTCTTAATCAATATTATGAAAAAACAATTTGTTGAATTGAATCTCGTCTTTATTCATGCATGAACATATAATTTGGATTTATTGATTTGTTAATAATAATTCTGAAAACACTGAACTCAGTTGAATCACTCTTGATCAATCTCTCTTAATGCACATTATTCTTGTACTCCACTCTCCATCAATCTTCACACTTTTCTTAAGTCTGTCTCTAAAAAGAATATTACATTTTTTTAATCATAAATAACTTTAACTTTAAAATATTAATTTATTATCTTTACCGAATGATTCATAGCCACACATATTCTAAGATTTATTTTAGACAACAAATTGATTTATTTTTCTTTAACTTTATATGTACTTTAGTTAAACTGTGTCGCATAAATTGAAACAGAACGAACAACTACCTAACCATTCTCTTTCTTTTTTGTAGCTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCATTTGCAATTTCATCAACTGGAAAAAGGTGTGTATTAGAAAAAGCAAAAAAACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCGATTTGTTTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAGGTAAATCTAACGACTTTACGATTCAGTGCTGATGTATTACTCGTTAAAAAATATAAAACATAGGTATACTTTTGTTGTCTAATAAATGACGCATAGTACAAAATATGTATAATTTGTTAGACAATAAAAATATATATATGCATTATTTTTTTATTATTATAATCGTCTTAATTATTTCGAGATTTTGTATTTATTTATGTGTAGGAGCATACTTGCCAGACATATGCAACAAGAACAAGAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCATTTTTATAAAATTATTTTTACACCTTATTATAAAATAATATATATG</genome_strand>
        <mrna_strand>TCTTTTTTCCAACAACATAAAAAAAATATGCAAAAAAA-AATCAAATTCCCAACTAAACAAAAGAGAAAAACAAGAAAAATAAATGGGTTCATCAATGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCCGTATATAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCCTTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAACAAAACCAAAAGATGACTTAATTAATAGTGAATACATATGCAAAACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTTTCCAAGTTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAG............................................................................................................................................................................................................GAGCATACTTGCCAGACATATGCAACAAGAACAAGAAATTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCATTTTTCTAAAATTATTTTTACACCTTATTATAAAAATATATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-ipTyjs/lycopersicum_combined_unigene_seqs" ref_id="SGN-U325370" ref_strand="+" ref_description="SGN-U325370        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G59010.1 | Symbol: None | protein kinase-related, low similarity to serine/threonine/tyrosine-specific protein kinase APK1, Arabidopsis thaliana, SP:Q06548 PIR:S28615; contains Pfam profile: PF00069 Eukaryotic protein kinase domain | chr5:23837594-23840476 REVERSE | Aliases: K19M22.7, K19M22_7 (evalue: 1e-110, score=395) genbank/nr: At5g59010(evalue: 8e-109, score=395)">
      <seq>tagaatcttattcgatcaggatggtaatcctagactctcttgctttggcttgatgaagaacagtagagacgggaagagttatagtacaaacttggctttcactcccccagagtacttgaaaacaggaagagtgacccctgaaagtgtagtttacagctttggaacaatgttgctagatcttttgagtggaaagcatattcctccaagccatgcacttgatctaattcgagggaagaattttttgatgcttatggattcttgtttggagggtcatttttcaaatgatgatggaagtgagcttgttcggctagccactcgttgtttacaatatgaggcacgtgagaggccaaatgcaaaatctctcgtcacttcacttatgtctcttcagaaagaaacagaggtgccatcacatgttttgttgggtattccacatggaactgaaaccccacctcagccattattattgactccaatgggtgaagcatgcttgagaaaggatcttactgcccttcatgaaatattggaaaagagtgggtacaaggatgatgaaggaattgccaatgagctttcgttccaaatgtggacaaatcagatgcaggaaaccttgaattctaagaagcatggtgatgctgctttccgagccaaggatttcattactgctattgactgctacacacagttcattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-0eW6u/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0026P14.1" temp_strand="-" temp_description="C09HBa0026P14.1  EU139068.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0026P14 sequenced_by:sistemasgenomicos">
        <position start="154217" stop="151252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="153917" g_stop="153899" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="153898" i_stop="153815" i_length="84">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="153814" g_stop="153709" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="125" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="153708" i_stop="153518" i_length="191">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="153517" g_stop="153432" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="211" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="153431" i_stop="153301" i_length="131">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.154" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="153300" g_stop="153112" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="400" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="153111" i_stop="152744" i_length="368">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="152743" g_stop="152579" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="565" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="152578" i_stop="151669" i_length="910">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="151668" g_stop="151555" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="679" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="151554" i_stop="151361" i_length="194">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="151360" g_stop="151351" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="689" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026P14.1" gen_strand="-" ref_id="SGN-U325370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026P14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="153917" e_stop="153899"/>
          <exon e_start="153814" e_stop="153709"/>
          <exon e_start="153517" e_stop="153432"/>
          <exon e_start="153300" e_stop="153112"/>
          <exon e_start="152743" e_stop="152579"/>
          <exon e_start="151668" e_stop="151555"/>
          <exon e_start="151360" e_stop="151351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCTTATTCGATCAGGTAAATATTGATTCTACTGCAATTTTTGTTATAACTAGGTTGTGTTAGGTGTAGTGCGCCTTACATTGGTTAGCTTTTTCGCAGGATGGTAATCCTAGACTCTCTTGCTTTGGCTTGATGAAGAACAGTAGAGACGGGAAGAGTTATAGTACAAACTTGGCTTTCACTCCCCCAGAGTACTTGAAAACAGGTCAAATATGATTTTTTTGTCAATCCAAAGTGTTGTGAGATGGAATTTTGTTGTTCACCGCAAAGCTTTAGTATCAAGAAAGATCTGCTTAAATAATTTACCAATAAGTTCAGGCATTTCTTTAAGTATTATGCTACTGTCTTTTCCTTAATTCAGCATAAGTGAAGTTGAAATGTGTTAATGATTGGCAGGAAGAGTGACCCCTGAAAGTGTAGTTTACAGCTTTGGAACAATGTTGCTAGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCATGTAAGTTGCAAAAGATTTTGGACCTAAGGATGTGCACTATATGAAATCCTGTATAAATTGAACTTTGTTTATCGACTCTATTACTTGAGTTCCTGAACTTGAAGAGCACGGTTTCTTCTACCTTCTCGTAGGCACTTGATCTAATTCGAGGGAAGAATTTTTTGATGCTTATGGATTCTTGTTTGGAGGGTCATTTTTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGGCCAAATGCAAAATCTCTCGTCACTTCACTTATGTCTCTTCAGAAAGAAACAGAGGTATGCCTATGCCCCTTGACTTACATACAGATCACAAAAACATTTAAAGAACTGCTTCTAACCTTCTTTCATTTGTGAGATCAAAAATTGATCAATGCCAAACAGATAAACACCTTCTTTTTACATTGTGTTATTTGGTTGTCTAGGAACACACTATAGTAAGGTTGATTATGTTACTATAGTGTGGATATATCCCATGTCTTTTGCTATCTCATATTTTCTATTTAGTTAACAACGGAAACTGAAACCTTCAAGGGAACATATTATATTTTAATTGCTATGTATTCTTCAGATGAATCACCTTGGTTTCTCCTTAATTTTGTTTTATATAATGCTTGGAGCCCATGTTTGCCATTGATATAATCCAGGTGCCATCACATGTTTTGTTGGGTATTCCACATGGAACTGAAACCCCACCTCAGCCATTATTATTGACTCCAATGGGTGAAGCATGCTTGAGAAAGGATCTTACTGCCCTTCATGAAATATTGGAAAAGAGTGGGTACAAGGATGATGAAGGAATTGCCAATGAGGTCTTCCTTTTCTTTACTCAATTTAACTATTTCATTAGCAGCTTTGTTTCTTAAAAATATATAAAAGAAGATGTTTTCTGGCTTAGATATTCTTTTCACAACCTAATACAATTAACCCTCTCTTTAGCACCTTGGATGAATGACATGTTTCTACTCCCTCTCCTTTTTAGTCGGTTTAAAAAAGATTTGATTTTTTTCCATTTCTGTGAACACTTTAATTTCAACTTTCCGTGTGATATGTTTAAGACCACACGATTAAAGGACATTTTTGGTACGTTCTGCCCATGTTTGGTTAAGACCACAAGTTTCAAAAGTCTTTTTTGTTCTCTTAAACTCCGTTCCAAGTCAAAACCTGTCAAACAAATTGAAACGGAGGGAGAATTTCCATAATAGTTTCTTATCATGGTATTCTTGATAAGGAACCACTTTTAAAAGGTTAATTTTAGATGCAGAAGATTTACCTCCTGCCCAAAAGAAGATCTAAGATAATAATACCTCATTGAGAGAGGTAAGTAAGATGTTAATGATCCAACTTTAATATCATGCTTTTGTTCCTCTAATTATTACCAAAAAGAGAGTCCACTATGTTTTGCCTTTTAAAATTTACTTACTCTGTTTCTTTTTCCATCAATTAGCAAAGGGCCTACCTGGTGTCATCATCTAAGCCCATGTGGTATCCTTTCAGTAAAAGTCTTAGATCTTCTGTCTGTTGATTGTCAAACAAAAGGATTACAATAAACCAATATAAGATATCTTAACATTTTGTGATAATTTACAAGTTCAGTATTATACTGTTTGTTTGTTATATGTGTTTTCATCTTCATATCTCAATTGCCCCACAACTAAATCATGTCTTATTTTTATTGGTATGACTTGATCTTGATTTTGTTATTTTGCGATTCCATTACAGCTTTCGTTCCAAATGTGGACAAATCAGATGCAGGAAACCTTGAATTCTAAGAAGCATGGTGATGCTGCTTTCCGAGCCAAGGATTTCATTACTGCTATTGACTGCTACACACAGGTTTGACCATAGCAAATATGTTTGTTTATGTTAATGGCTAAAATGCGGATGCTTTTATCATAGTCGTAAAACAATTGCAGCAAGACTTGATTAAATTCCTCAGTAAAAGCTCAAAATGAAAAATGTCTCTTAAAAGTATTCAGCTATTTGAACAAGACAAGGCAGACTTACATGTTTTTCTGTTTAATATATAGTTCATTGATG</genome_strand>
        <mrna_strand>TAGAATCTTATTCGATCAG....................................................................................GATGGTAATCCTAGACTCTCTTGCTTTGGCTTGATGAAGAACAGTAGAGACGGGAAGAGTTATAGTACAAACTTGGCTTTCACTCCCCCAGAGTACTTGAAAACAG...............................................................................................................................................................................................GAAGAGTGACCCCTGAAAGTGTAGTTTACAGCTTTGGAACAATGTTGCTAGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCAT...................................................................................................................................GCACTTGATCTAATTCGAGGGAAGAATTTTTTGATGCTTATGGATTCTTGTTTGGAGGGTCATTTTTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGGCCAAATGCAAAATCTCTCGTCACTTCACTTATGTCTCTTCAGAAAGAAACAGAG................................................................................................................................................................................................................................................................................................................................................................................GTGCCATCACATGTTTTGTTGGGTATTCCACATGGAACTGAAACCCCACCTCAGCCATTATTATTGACTCCAATGGGTGAAGCATGCTTGAGAAAGGATCTTACTGCCCTTCATGAAATATTGGAAAAGAGTGGGTACAAGGATGATGAAGGAATTGCCAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCGTTCCAAATGTGGACAAATCAGATGCAGGAAACCTTGAATTCTAAGAAGCATGGTGATGCTGCTTTCCGAGCCAAGGATTTCATTACTGCTATTGACTGCTACACACAG..................................................................................................................................................................................................TTCATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="25537" PGL_stop="26307"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25537" e_stop="25584"/>
            <exon e_start="25736" e_stop="26307"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25537" e_stop="25584" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.888">
            <gDNA_intron_boundary i_start="25585" i_stop="25735" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25736" e_stop="26307" e_length="572"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25537" stop="25584"/>
              <exon start="25736" stop="26307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATATGAATCAGATTAAGGAGATGAATGTAGAAGTTGGCAGGAACGAG : GTGATTCGTCTACTTGCTCGTTCATTTATTTCAAAGACTCCCTTGTCTGATGTGTTTCTGCCCAAGCAAAAACAAAGAAGGGCACAAGTAGACATTGTAACAATGTCCGAGTCTGGAAATTTGTCGTCCATTTCTGAAAATGGAACGAGTAATAGCACCAAGAAGTTGGAGCTGAAGCTAACAGTAAGGAAGTCTACAAAGAAGGTCTTGTGTGCAGAAGCAGACAATGATTTTATTGATTTTCTCTTCAACTTCTTGACGATTCCTATAGGATCAATTGAAGATGTTCTAAAAGGGAGTTCTGGCTTGAGATGTATCGATAACTTCTATAAAAGTGTGGAGGCTTTAGATTCGAAATGGTTCAATATGCCTCCAAAGCAGAATAGTTACCATAGTGAGGATACATCTAATGACAACTTTAAGACAGTATTACTCAAGCCCAATGTTGCCACACATTATAATTCTGAGTATCAGCTGCTACAGATTTCAGAAGGAAAATCAGAATTTTACAATTTGTATGATCCAAGGCAACATATAAGGGGTAGTCATGTTCCCAAATTTCGTAAGTTCGC</gDNA_template>
            <first_frame> D  M  N  Q  I  K  E  M  N  V  E  V  G  R  N  E  :  V  I  R  L  L  A  R  S  F  I  S  K  T  P  L  S  D  V  F  L  P  K  Q  K  Q  R  R  A  Q  V  D  I  V  T  M  S  E  S  G  N  L  S  S  I  S  E  N  G  T  S  N  S  T  K  K  L  E  L  K  L  T  V  R  K  S  T  K  K  V  L  C  A  E  A  D  N  D  F  I  D  F  L  F  N  F  L  T  I  P  I  G  S  I  E  D  V  L  K  G  S  S  G  L  R  C  I  D  N  F  Y  K  S  V  E  A  L  D  S  K  W  F  N  M  P  P  K  Q  N  S  Y  H  S  E  D  T  S  N  D  N  F  K  T  V  L  L  K  P  N  V  A  T  H  Y  N  S  E  Y  Q  L  L  Q  I  S  E  G  K  S  E  F  Y  N  L  Y  D  P  R  Q  H  I  R  G  S  H  V  P  K  F  R  K  F   </first_frame>
            <second_frame>  I  *  I  R  L  R  R  *  M  *  K  L  A  G  T  R :   *  F  V  Y  L  L  V  H  L  F  Q  R  L  P  C  L  M  C  F  C  P  S  K  N  K  E  G  H  K  *  T  L  *  Q  C  P  S  L  E  I  C  R  P  F  L  K  M  E  R  V  I  A  P  R  S  W  S  *  S  *  Q  *  G  S  L  Q  R  R  S  C  V  Q  K  Q  T  M  I  L  L  I  F  S  S  T  S  *  R  F  L  *  D  Q  L  K  M  F  *  K  G  V  L  A  *  D  V  S  I  T  S  I  K  V  W  R  L  *  I  R  N  G  S  I  C  L  Q  S  R  I  V  T  I  V  R  I  H  L  M  T  T  L  R  Q  Y  Y  S  S  P  M  L  P  H  I  I  I  L  S  I  S  C  Y  R  F  Q  K  E  N  Q  N  F  T  I  C  M  I  Q  G  N  I  *  G  V  V  M  F  P  N  F  V  S  S  </second_frame>
            <third_frame>   Y  E  S  D  *  G  D  E  C  R  S  W  Q  E  R   : G  D  S  S  T  C  S  F  I  Y  F  K  D  S  L  V  *  C  V  S  A  Q  A  K  T  K  K  G  T  S  R  H  C  N  N  V  R  V  W  K  F  V  V  H  F  *  K  W  N  E  *  *  H  Q  E  V  G  A  E  A  N  S  K  E  V  Y  K  E  G  L  V  C  R  S  R  Q  *  F  Y  *  F  S  L  Q  L  L  D  D  S  Y  R  I  N  *  R  C  S  K  R  E  F  W  L  E  M  Y  R  *  L  L  *  K  C  G  G  F  R  F  E  M  V  Q  Y  A  S  K  A  E  *  L  P  *  *  G  Y  I  *  *  Q  L  *  D  S  I  T  Q  A  Q  C  C  H  T  L  *  F  *  V  S  A  A  T  D  F  R  R  K  I  R  I  L  Q  F  V  *  S  K  A  T  Y  K  G  *  S  C  S  Q  I  S  *  V  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25537" stop="25584"/>
                    <exon start="25736" stop="26305"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMNQIKEMNVEVGRNEVIRLLARSFISKTPLSDVFLPKQKQRRAQVDIVTMSESGNLSSISENGTSNSTKKLELKLTVRKSTKKVLCAEADNDFIDFLFNFLTIPIGSIEDVLKGSSGLRCIDNFYKSVEALDSKWFNMPPKQNSYHSEDTSNDNFKTVLLKPNVATHYNSEYQLLQISEGKSEFYNLYDPRQHIRGSHVPKFRKF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="38482" PGL_stop="43235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38482" e_stop="38681"/>
            <exon e_start="39576" e_stop="39797"/>
            <exon e_start="40625" e_stop="40691"/>
            <exon e_start="41001" e_stop="41332"/>
            <exon e_start="41491" e_stop="41632"/>
            <exon e_start="41839" e_stop="41964"/>
            <exon e_start="42681" e_stop="43235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.828" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38482" e_stop="38681" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="38682" i_stop="39575" i_length="894"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39576" e_stop="39797" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40625" e_stop="40691" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40692" i_stop="41000" i_length="309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41001" e_stop="41332" e_length="332"/>
          </exon>
          <intron i_serial="4" don_prob="0.760" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41333" i_stop="41490" i_length="158"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41491" e_stop="41632" e_length="142"/>
          </exon>
          <intron i_serial="5" don_prob="0.700" acc_prob="0.928">
            <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41839" e_stop="41964" e_length="126"/>
          </exon>
          <intron i_serial="6" don_prob="0.937" acc_prob="0.828">
            <gDNA_intron_boundary i_start="41965" i_stop="42680" i_length="716"/>
          </intron>
          <exon e_serial="7" e_score="0.977">
            <gDNA_exon_boundary e_start="42681" e_stop="43235" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38482" stop="38681"/>
              <exon start="39576" stop="39797"/>
              <exon start="40625" stop="40691"/>
              <exon start="41001" stop="41332"/>
              <exon start="41491" stop="41632"/>
              <exon start="41839" stop="41964"/>
              <exon start="42681" stop="43235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318614" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACACCCACAGCAAATGGCGTGTGAGAAGATAATCTCCTACATATCTTACAGTATATGACTATGTACTTTCTTCTTCATTAAGGCACAAATTGGTTTATATATCATGTGGATAGAGGGATTATGTTAAAATCTACTATTTGAACTGTGATCTGAGTCTTAAATTTGTTGGGGAGCAATGGAGCAGCCACTGTTGATAG : GGAAAGTAGCTAGTGAAACAGGTCAAAGAGGGAGTGAGAAATGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG : AACAAGGGATTGTTTATCAGGGTGGGTACTACGGAGATGCAAGTGGGACTACTGGTGATCAACGGAG : GCAAGTGCTAGACGAGGTAGAAGTACGAGAGTTGCTTATAGATCATGTTGGCCATCGCTGCTGTTGGGGAAGTCGTCCAGCTCGGACCTGGAAGATTCATGCAATTGAAGACTGCAATGTCTATGTGGGAACTCTGGAAACTTTCACGGAAGAGAGAGATACAGTTGTAGAGAAGGAGCTGTACTCCGGTGGCAGCATCGAAGGAAAGGACAAGGGACCTGAAACAGGAATATGGGAGCTAGATTTAAGGTCTGAGTTTCCTGTTTTATTTGTACCTTACAAGGAATCAAGGCTGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG : GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT : ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG : GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTATCCTTCTAGGTTTTGTTGGGGCCTTTGCCCTTGCCTGGAATGGTTGAAGTTATAATTCAAGAACTGGATTTGTTGTTGTCATCATTGGTTTGAGTTTGTCCCAAGTGTTCAAGGGGACAAAATGTTGGTTTTTGTGTAGAATAATATGCTTTATGATTTGCACTGTTCCCAAATAAAAAGAAAAAAAAAAGTTGTCTTCCTATCAATAATTGTCATGATAGGAAA</gDNA_template>
            <first_frame> P  T  P  T  A  N  G  V  *  E  D  N  L  L  H  I  L  Q  Y  M  T  M  Y  F  L  L  H  *  G  T  N  W  F  I  Y  H  V  D  R  G  I  M  L  K  S  T  I  *  T  V  I  *  V  L  N  L  L  G  S  N  G  A  A  T  V  D  R :   E  S  S  *  *  N  R  S  K  R  E  *  E  M  G  F  L  *  V  C  G  K  G  W  L  C  D  S  H  D  F  L  S  W  I  R  S  Q  R  *  *  D  S  V  C  C  F  Y  V  S  S  L  L  S  F  S  P  C  P  L  D  Q  L  S  S  I  P  I  P  A  T  V  L  * :   T  R  D  C  L  S  G  W  V  L  R  R  C  K  W  D  Y  W  *  S  T  E  :  A  S  A  R  R  G  R  S  T  R  V  A  Y  R  S  C  W  P  S  L  L  L  G  K  S  S  S  S  D  L  E  D  S  C  N  *  R  L  Q  C  L  C  G  N  S  G  N  F  H  G  R  E  R  Y  S  C  R  E  G  A  V  L  R  W  Q  H  R  R  K  G  Q  G  T  *  N  R  N  M  G  A  R  F  K  V  *  V  S  C  F  I  C  T  L  Q  G  I  K  A  E  N  S  S  F  R  N  Y  *  E  M  F  R :   L  *  W  S  R  Q  Y  S  L  S  Y  L  Q  Y  R  S  R  S  R  V  L  Q  G  G  S  N  D  S  V  Y  D  L  L  W  K  G  S  N  C  S  *  G  W  I  *  Y  N  :  M  P  E  L  *  R  *  W  K  T  S  L  C  D  L  *  I  S  W  P  H  Q  M  P  N  M  P  R  W  W  F  S  F  D  T  E  S  S  C  C  *  M  :  E  D  A  F  N  Q  E  S  *  C  Y  K  R  S  S  F  C  S  R  R  R  V  S  Q  S  K  G  S  S  V  V  Q  *  P  S  L  P  V  H  A  S  L  L  C  *  F  V  F  P  E  Q  V  L  F  *  S  N  C  R  E  A  F  C  T  Y  Y  C  K  D  H  M  R  A  P  H  H  L  S  C  P  S  D  S  R  D  Y  D  *  S  *  P  L  L  Q  L  L  Y  Y  W  K  *  Q  R  G  L  Y  E  R  L  L  S  F  *  V  L  L  G  P  L  P  L  P  G  M  V  E  V  I  I  Q  E  L  D  L  L  L  S  S  L  V  *  V  C  P  K  C  S  R  G  Q  N  V  G  F  C  V  E  *  Y  A  L  *  F  A  L  F  P  N  K  K  K  K  K  S  C  L  P  I  N  N  C  H  D  R  K </first_frame>
            <second_frame>  P  H  P  Q  Q  M  A  C  E  K  I  I  S  Y  I  S  Y  S  I  *  L  C  T  F  F  F  I  K  A  Q  I  G  L  Y  I  M  W  I  E  G  L  C  *  N  L  L  F  E  L  *  S  E  S  *  I  C  W  G  A  M  E  Q  P  L  L  I   : G  K  V  A  S  E  T  G  Q  R  G  S  E  K  W  G  S  Y  E  Y  V  G  R  A  G  S  V  I  P  T  T  S  L  A  G  S  E  V  S  V  D  E  I  R  S  A  A  S  M  S  V  P  Y  S  P  S  L  H  A  P  L  I  S  S  P  Q  S  Q  S  Q  P  Q  F  Y   : E  Q  G  I  V  Y  Q  G  G  Y  Y  G  D  A  S  G  T  T  G  D  Q  R  R :   Q  V  L  D  E  V  E  V  R  E  L  L  I  D  H  V  G  H  R  C  C  W  G  S  R  P  A  R  T  W  K  I  H  A  I  E  D  C  N  V  Y  V  G  T  L  E  T  F  T  E  E  R  D  T  V  V  E  K  E  L  Y  S  G  G  S  I  E  G  K  D  K  G  P  E  T  G  I  W  E  L  D  L  R  S  E  F  P  V  L  F  V  P  Y  K  E  S  R  L  R  I  P  H  S  E  T  I  E  K  C  S   : G  C  D  G  R  G  N  T  V  C  P  T  C  N  T  D  Q  D  P  G  F  Y  K  E  G  Q  M  T  Q  C  T  T  C  Y  G  R  G  L  I  A  H  K  D  G  S  D  T  I :   C  L  N  C  K  G  N  G  K  L  P  C  V  T  C  E  S  R  G  L  I  K  C  Q  T  C  Q  G  G  G  S  L  L  T  Q  K  V  A  V  V  R  W :   R  T  H  S  T  R  K  V  N  A  T  S  G  A  A  S  V  P  D  D  V  F  H  R  A  K  G  V  Q  L  C  N  N  Q  A  Y  Q  C  T  P  A  Y  F  A  D  S  Y  F  L  N  K  F  S  S  E  V  I  A  E  R  P  S  V  P  T  T  A  R  I  I  C  E  R  H  I  I  S  V  V  P  V  T  R  V  T  M  T  D  R  N  R  S  F  S  F  Y  I  I  G  N  D  R  E  V  Y  M  K  D  Y  Y  P  S  R  F  C  W  G  L  C  P  C  L  E  W  L  K  L  *  F  K  N  W  I  C  C  C  H  H  W  F  E  F  V  P  S  V  Q  G  D  K  M  L  V  F  V  *  N  N  M  L  Y  D  L  H  C  S  Q  I  K  R  K  K  K  V  V  F  L  S  I  I  V  M  I  G   </second_frame>
            <third_frame>   H  T  H  S  K  W  R  V  R  R  *  S  P  T  Y  L  T  V  Y  D  Y  V  L  S  S  S  L  R  H  K  L  V  Y  I  S  C  G  *  R  D  Y  V  K  I  Y  Y  L  N  C  D  L  S  L  K  F  V  G  E  Q  W  S  S  H  C  *  *  :  G  K  *  L  V  K  Q  V  K  E  G  V  R  N  G  V  L  M  S  M  W  E  G  L  A  L  *  F  P  R  L  P  *  L  D  Q  K  S  A  L  M  R  F  G  L  L  L  L  C  Q  F  L  T  L  L  L  S  M  P  P  *  S  A  L  L  N  P  N  P  S  H  S  F  M  :  N  K  G  L  F  I  R  V  G  T  T  E  M  Q  V  G  L  L  V  I  N  G   : G  K  C  *  T  R  *  K  Y  E  S  C  L  *  I  M  L  A  I  A  A  V  G  E  V  V  Q  L  G  P  G  R  F  M  Q  L  K  T  A  M  S  M  W  E  L  W  K  L  S  R  K  R  E  I  Q  L  *  R  R  S  C  T  P  V  A  A  S  K  E  R  T  R  D  L  K  Q  E  Y  G  S  *  I  *  G  L  S  F  L  F  Y  L  Y  L  T  R  N  Q  G  *  E  F  L  I  Q  K  L  L  R  N  V  Q  :  V  V  M  V  E  A  I  Q  F  V  L  L  A  I  Q  I  K  I  Q  G  S  T  R  R  V  K  *  L  S  V  R  L  A  M  E  G  V  *  L  L  I  R  M  D  L  I  Q   : Y  A  *  I  V  K  V  M  E  N  F  L  V  *  L  V  N  L  V  A  S  S  N  A  K  H  A  K  V  V  V  L  F  *  H  R  K  *  L  L  L  D   : G  G  R  I  Q  P  G  K  L  M  L  Q  A  E  Q  L  L  F  Q  T  T  C  F  T  E  Q  R  E  F  S  C  A  I  T  K  L  T  S  A  R  Q  P  T  L  L  I  R  I  S  *  T  S  S  L  L  K  *  L  Q  R  G  L  L  Y  L  L  L  Q  G  S  Y  A  S  A  T  S  S  Q  L  S  Q  *  L  A  *  L  *  L  I  V  T  A  P  S  A  S  I  L  L  E  M  T  E  R  F  I  *  K  T  T  I  L  L  G  F  V  G  A  F  A  L  A  W  N  G  *  S  Y  N  S  R  T  G  F  V  V  V  I  I  G  L  S  L  S  Q  V  F  K  G  T  K  C  W  F  L  C  R  I  I  C  F  M  I  C  T  V  P  K  *  K  E  K  K  K  L  S  S  Y  Q  *  L  S  *  *  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38645" stop="38681"/>
                    <exon start="39576" stop="39797"/>
                    <exon start="40625" stop="40691"/>
                    <exon start="41001" stop="41332"/>
                    <exon start="41491" stop="41632"/>
                    <exon start="41839" stop="41964"/>
                    <exon start="42681" stop="43065"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1308</number_coding_nucleotides>
                  <number_encoded_amino_acids>436</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICWGAMEQPLLIGKVASETGQRGSEKWGSYEYVGRAGSVIPTTSLAGSEVSVDEIRSAASMSVPYSPSLHAPLISSPQSQSQPQFYEQGIVYQGGYYGDASGTTGDQRRQVLDEVEVRELLIDHVGHRCCWGSRPARTWKIHAIEDCNVYVGTLETFTEERDTVVEKELYSGGSIEGKDKGPETGIWELDLRSEFPVLFVPYKESRLRIPHSETIEKCSGCDGRGNTVCPTCNTDQDPGFYKEGQMTQCTTCYGRGLIAHKDGSDTICLNCKGNGKLPCVTCESRGLIKCQTCQGGGSLLTQKVAVVRWRTHSTRKVNATSGAASVPDDVFHRAKGVQLCNNQAYQCTPAYFADSYFLNKFSSEVIAERPSVPTTARIICERHIISVVPVTRVTMTDRNRSFSFYIIGNDREVYMKDYYPSRFCWGLCPCLEWLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41294" e_stop="41332"/>
            <exon e_start="41491" e_stop="41632"/>
            <exon e_start="41839" e_stop="41921"/>
            <exon e_start="42681" e_stop="42981"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.828" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41294" e_stop="41332" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41333" i_stop="41490" i_length="158"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41491" e_stop="41632" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.700" acc_prob="0.928">
            <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41839" e_stop="41921" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.844" acc_prob="0.828">
            <gDNA_intron_boundary i_start="41922" i_stop="42680" i_length="759"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42681" e_stop="42981" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41294" stop="41332"/>
              <exon start="41491" stop="41632"/>
              <exon start="41839" stop="41921"/>
              <exon start="42681" stop="42981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGAATTCCTCATTCAGAAACTATTGAGAAATGTTCAG : GTTGTGATGGTCGAGGCAATACAGTTTGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT : ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAG : GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAAT</gDNA_template>
            <first_frame> *  E  F  L  I  Q  K  L  L  R  N  V  Q  :  V  V  M  V  E  A  I  Q  F  V  L  L  A  I  Q  I  K  I  Q  G  S  T  R  R  V  K  *  L  S  V  R  L  A  M  E  G  V  *  L  L  I  R  M  D  L  I  Q   : Y  A  *  I  V  K  V  M  E  N  F  L  V  *  L  V  N  L  V  A  S  S  N  A  K  H  A  K  :  E  D  A  F  N  Q  E  S  *  C  Y  K  R  S  S  F  C  S  R  R  R  V  S  Q  S  K  G  S  S  V  V  Q  *  P  S  L  P  V  H  A  S  L  L  C  *  F  V  F  P  E  Q  V  L  F  *  S  N  C  R  E  A  F  C  T  Y  Y  C  K  D  H  M  R  A  P  H  H  L  S  C  P  S  D  S  R  D  Y  D  *  S  *  P  L  L  Q  L  L  Y  Y  W  K  </first_frame>
            <second_frame>  E  N  S  S  F  R  N  Y  *  E  M  F  R :   L  *  W  S  R  Q  Y  S  L  S  Y  L  Q  Y  R  S  R  S  R  V  L  Q  G  G  S  N  D  S  V  Y  D  L  L  W  K  G  S  N  C  S  *  G  W  I  *  Y  N  :  M  P  E  L  *  R  *  W  K  T  S  L  C  D  L  *  I  S  W  P  H  Q  M  P  N  M  P  R :   R  T  H  S  T  R  K  V  N  A  T  S  G  A  A  S  V  P  D  D  V  F  H  R  A  K  G  V  Q  L  C  N  N  Q  A  Y  Q  C  T  P  A  Y  F  A  D  S  Y  F  L  N  K  F  S  S  E  V  I  A  E  R  P  S  V  P  T  T  A  R  I  I  C  E  R  H  I  I  S  V  V  P  V  T  R  V  T  M  T  D  R  N  R  S  F  S  F  Y  I  I  G  N </second_frame>
            <third_frame>   R  I  P  H  S  E  T  I  E  K  C  S   : G  C  D  G  R  G  N  T  V  C  P  T  C  N  T  D  Q  D  P  G  F  Y  K  E  G  Q  M  T  Q  C  T  T  C  Y  G  R  G  L  I  A  H  K  D  G  S  D  T  I :   C  L  N  C  K  G  N  G  K  L  P  C  V  T  C  E  S  R  G  L  I  K  C  Q  T  C  Q   : G  G  R  I  Q  P  G  K  L  M  L  Q  A  E  Q  L  L  F  Q  T  T  C  F  T  E  Q  R  E  F  S  C  A  I  T  K  L  T  S  A  R  Q  P  T  L  L  I  R  I  S  *  T  S  S  L  L  K  *  L  Q  R  G  L  L  Y  L  L  L  Q  G  S  Y  A  S  A  T  S  S  Q  L  S  Q  *  L  A  *  L  *  L  I  V  T  A  P  S  A  S  I  L  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41296" stop="41332"/>
                    <exon start="41491" stop="41632"/>
                    <exon start="41839" stop="41921"/>
                    <exon start="42681" stop="42829"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIPHSETIEKCSGCDGRGNTVCPTCNTDQDPGFYKEGQMTQCTTCYGRGLIAHKDGSDTICLNCKGNGKLPCVTCESRGLIKCQTCQGGRIQPGKLMLQAEQLLFQTTCFTEQREFSCAITKLTSARQPTLLIRIS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41887" stop="41921"/>
                    <exon start="42681" stop="42981"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISWPHQMPNMPRRTHSTRKVNATSGAASVPDDVFHRAKGVQLCNNQAYQCTPAYFADSYFLNKFSSEVIAERPSVPTTARIICERHIISVVPVTRVTMTDRNRSFSFYIIGN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="39617" e_stop="39797"/>
            <exon e_start="40625" e_stop="40648"/>
            <exon e_start="41517" e_stop="41632"/>
            <exon e_start="41839" e_stop="41964"/>
            <exon e_start="42681" e_stop="43011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.972"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.828" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="39617" e_stop="39797" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39798" i_stop="40624" i_length="827"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40625" e_stop="40648" e_length="24"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40649" i_stop="41516" i_length="868"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41517" e_stop="41632" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.700" acc_prob="0.928">
            <gDNA_intron_boundary i_start="41633" i_stop="41838" i_length="206"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41839" e_stop="41964" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.828">
            <gDNA_intron_boundary i_start="41965" i_stop="42680" i_length="716"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="42681" e_stop="43011" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39617" stop="39797"/>
              <exon start="40625" stop="40648"/>
              <exon start="41517" stop="41632"/>
              <exon start="41839" stop="41964"/>
              <exon start="42681" stop="43011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGGTTCTTATGAGTATGTGGGAAGGGCTGGCTCTGTGATTCCCACGACTTCCTTAGCTGGATCAGAAGTCAGCGTTGATGAGATTCGGTCTGCTGCTTCTATGTCAGTTCCTTACTCTCCTTCTCTCCATGCCCCCTTGATCAGCTCTCCTCAATCCCAATCCCAGCCACAGTTTTATG : AACAAGGGATTGTTTATCAGGGTG : TGTCCTACTTGCAATACAGATCAAGATCCAGGGTTCTACAAGGAGGGTCAAATGACTCAGTGTACGACTTGCTATGGAAGGGGTCTAATTGCTCATAAGGATGGATCTGATACAAT : ATGCCTGAATTGTAAAGGTAATGGAAAACTTCCTTGTGTGACTTGTGAATCTCGTGGCCTCATCAAATGCCAAACATGCCAAGGTGGTGGTTCTCTTTTGACACAGAAAGTAGCTGTTGTTAGATG : GAGGACGCATTCAACCAGGAAAGTTAATGCTACAAGCGGAGCAGCTTCTGTTCCAGACGACGTGTTTCACAGAGCAAAGGGAGTTCAGTTGTGCAATAACCAAGCTTACCAGTGCACGCCAGCCTACTTTGCTGATTCGTATTTCCTGAACAAGTTCTCTTCTGAAGTAATTGCAGAGAGGCCTTCTGTACCTACTACTGCAAGGATCATATGCGAGCGCCACATCATCTCAGTTGTCCCAGTGACTCGCGTGACTATGACTGATCGTAACCGCTCCTTCAGCTTCTATATTATTGGAAATGACAGAGAGGTTTATATGAAAGACTACTAT</gDNA_template>
            <first_frame> W  G  S  Y  E  Y  V  G  R  A  G  S  V  I  P  T  T  S  L  A  G  S  E  V  S  V  D  E  I  R  S  A  A  S  M  S  V  P  Y  S  P  S  L  H  A  P  L  I  S  S  P  Q  S  Q  S  Q  P  Q  F  Y   : E  Q  G  I  V  Y  Q  G   : V  S  Y  L  Q  Y  R  S  R  S  R  V  L  Q  G  G  S  N  D  S  V  Y  D  L  L  W  K  G  S  N  C  S  *  G  W  I  *  Y  N  :  M  P  E  L  *  R  *  W  K  T  S  L  C  D  L  *  I  S  W  P  H  Q  M  P  N  M  P  R  W  W  F  S  F  D  T  E  S  S  C  C  *  M  :  E  D  A  F  N  Q  E  S  *  C  Y  K  R  S  S  F  C  S  R  R  R  V  S  Q  S  K  G  S  S  V  V  Q  *  P  S  L  P  V  H  A  S  L  L  C  *  F  V  F  P  E  Q  V  L  F  *  S  N  C  R  E  A  F  C  T  Y  Y  C  K  D  H  M  R  A  P  H  H  L  S  C  P  S  D  S  R  D  Y  D  *  S  *  P  L  L  Q  L  L  Y  Y  W  K  *  Q  R  G  L  Y  E  R  L  L  </first_frame>
            <second_frame>  G  V  L  M  S  M  W  E  G  L  A  L  *  F  P  R  L  P  *  L  D  Q  K  S  A  L  M  R  F  G  L  L  L  L  C  Q  F  L  T  L  L  L  S  M  P  P  *  S  A  L  L  N  P  N  P  S  H  S  F  M  :  N  K  G  L  F  I  R  V  :  C  P  T  C  N  T  D  Q  D  P  G  F  Y  K  E  G  Q  M  T  Q  C  T  T  C  Y  G  R  G  L  I  A  H  K  D  G  S  D  T  I :   C  L  N  C  K  G  N  G  K  L  P  C  V  T  C  E  S  R  G  L  I  K  C  Q  T  C  Q  G  G  G  S  L  L  T  Q  K  V  A  V  V  R  W :   R  T  H  S  T  R  K  V  N  A  T  S  G  A  A  S  V  P  D  D  V  F  H  R  A  K  G  V  Q  L  C  N  N  Q  A  Y  Q  C  T  P  A  Y  F  A  D  S  Y  F  L  N  K  F  S  S  E  V  I  A  E  R  P  S  V  P  T  T  A  R  I  I  C  E  R  H  I  I  S  V  V  P  V  T  R  V  T  M  T  D  R  N  R  S  F  S  F  Y  I  I  G  N  D  R  E  V  Y  M  K  D  Y  Y </second_frame>
            <third_frame>   G  F  L  *  V  C  G  K  G  W  L  C  D  S  H  D  F  L  S  W  I  R  S  Q  R  *  *  D  S  V  C  C  F  Y  V  S  S  L  L  S  F  S  P  C  P  L  D  Q  L  S  S  I  P  I  P  A  T  V  L  * :   T  R  D  C  L  S  G  C :   V  L  L  A  I  Q  I  K  I  Q  G  S  T  R  R  V  K  *  L  S  V  R  L  A  M  E  G  V  *  L  L  I  R  M  D  L  I  Q   : Y  A  *  I  V  K  V  M  E  N  F  L  V  *  L  V  N  L  V  A  S  S  N  A  K  H  A  K  V  V  V  L  F  *  H  R  K  *  L  L  L  D   : G  G  R  I  Q  P  G  K  L  M  L  Q  A  E  Q  L  L  F  Q  T  T  C  F  T  E  Q  R  E  F  S  C  A  I  T  K  L  T  S  A  R  Q  P  T  L  L  I  R  I  S  *  T  S  S  L  L  K  *  L  Q  R  G  L  L  Y  L  L  L  Q  G  S  Y  A  S  A  T  S  S  Q  L  S  Q  *  L  A  *  L  *  L  I  V  T  A  P  S  A  S  I  L  L  E  M  T  E  R  F  I  *  K  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39759" stop="39797"/>
                    <exon start="40625" stop="40648"/>
                    <exon start="41517" stop="41632"/>
                    <exon start="41839" stop="41964"/>
                    <exon start="42681" stop="43011"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SALLNPNPSHSFMNKGLFIRVCPTCNTDQDPGFYKEGQMTQCTTCYGRGLIAHKDGSDTICLNCKGNGKLPCVTCESRGLIKCQTCQGGGSLLTQKVAVVRWRTHSTRKVNATSGAASVPDDVFHRAKGVQLCNNQAYQCTPAYFADSYFLNKFSSEVIAERPSVPTTARIICERHIISVVPVTRVTMTDRNRSFSFYIIGNDREVYMKDYY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="43337" PGL_stop="43505"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43337" e_stop="43505"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="43337" e_stop="43505" e_length="169"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43337" stop="43505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTACCTGAACTTCAATCTCATTTTTGAGTTGAATTTTTATCTCATTAGTTATGATTCGATTCTCCACCTTTGTAATCCTCTTTCCAATTACCCTTTGTAGCTACCCTGTTTTATTTTATTTTTAAAAAGTTAATATAATGTCATAATTGTTTTTCGTAAGTGCAAGT</gDNA_template>
            <first_frame> G  Y  L  N  F  N  L  I  F  E  L  N  F  Y  L  I  S  Y  D  S  I  L  H  L  C  N  P  L  S  N  Y  P  L  *  L  P  C  F  I  L  F  L  K  S  *  Y  N  V  I  I  V  F  R  K  C  K  </first_frame>
            <second_frame>  V  T  *  T  S  I  S  F  L  S  *  I  F  I  S  L  V  M  I  R  F  S  T  F  V  I  L  F  P  I  T  L  C  S  Y  P  V  L  F  Y  F  *  K  V  N  I  M  S  *  L  F  F  V  S  A  S </second_frame>
            <third_frame>   L  P  E  L  Q  S  H  F  *  V  E  F  L  S  H  *  L  *  F  D  S  P  P  L  *  S  S  F  Q  L  P  F  V  A  T  L  F  Y  F  I  F  K  K  L  I  *  C  H  N  C  F  S  *  V  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026P14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="45339" PGL_stop="46599"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45339" e_stop="46599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="45339" e_stop="46599" e_length="1261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45339" stop="46599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45517" stop="45710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTTCTTTGTGTTTTTAGTCTAAAAGTTATTTCTTTTCTTCTCTCTCTTATTAAAGAAAAAAAATAATAAGAGGGAGAAAATAAATTTCACATTCAACCATGTTTTCCCTTTCATCTATACAATCTAACAATATTCAATCTCAATCATCTTCGTCGCTACTCTTCAATCATCATCACCAGCATTCAACTATTTCAACTCGGTTTCATCACCACCGCCTACTCTTCCCTCTCCGTGCCCAAAATAGCGACTTAACTACAGCCACCACCAATAACAACTATGTCGATCTTGATGACAATCTAACCAGACTTGATAAATTTTCAAAATCATTAAGTATTTCGAATATCGAAGAAAATACATCATTAAATCCCCTCTTATGTTCCAATAACAAGCTCAAAATAGCTATCATAGGCTTTGGAAACTTTGGACAATTTATTGCCAAATCCTTTATCAAACAAGGCCATGTTGTATTAGCTCATTCACGTAGTGATTATTCCCTCATAGCACAATCCCTTAATGTCCACTTCTTTCAAGATCCTAATGACTTATGTGAACAACATCCTGACGTTATTTTACTTTGCACATCCATCAATTCACTCGAAAACGTCATTCGTTCCCTTCCCATCCAAAAGCTTAAACGTAACACACTTTTCGTAGACGTATTATCAGTCAAAGAATTCCCGAAAAACATTTTTCTTCAATCACTACCAAAAGAATTTGATATTTTGTGTACTCATCCTATGTTTGGTCCAACAAGTGGTAAAGACAATTGGAAAGGACTACCATTTATGTATGACAAAGTTAGAATTGGACAAGAAGAGTCAAGAATTAAAAGAGTCAACAATTTTATCAACATTTTTGTAAAAGAAGGTTGTAGAATGGTTGAAATGAGTTGTAGTGAACATGACAAGTATGCTGCTGGATCACAATTTATTACACATACTATTGGAAGAATGTTACAAAGACTTGGGACACAAACAACTCCTATAAACACAAAAGGATATGAAAGTTTGTTGAATTTGATGGAGAATACAACTAGTGATAGTTTTGATTTGTATTGTGGTTTGTTTATGTATAACAATAATTCAATGGAGGTGTTAGAGAAACTAGATGCAGCATTGGATAGTTTGAAAAGGGAATTATTTGGACAAGTTCTTCAAAAGTTGGAGAAAAGAGTGGAAAAGGGAAGTAGGTTAGCTTTACCTACTCCTGATTTTAGTAAGAAAATTGAAAAATTGAAAGTTGAGAGGAAGGAACTAG</gDNA_template>
            <first_frame> F  L  S  L  C  F  *  S  K  S  Y  F  F  S  S  L  S  Y  *  R  K  K  I  I  R  G  R  K  *  I  S  H  S  T  M  F  S  L  S  S  I  Q  S  N  N  I  Q  S  Q  S  S  S  S  L  L  F  N  H  H  H  Q  H  S  T  I  S  T  R  F  H  H  H  R  L  L  F  P  L  R  A  Q  N  S  D  L  T  T  A  T  T  N  N  N  Y  V  D  L  D  D  N  L  T  R  L  D  K  F  S  K  S  L  S  I  S  N  I  E  E  N  T  S  L  N  P  L  L  C  S  N  N  K  L  K  I  A  I  I  G  F  G  N  F  G  Q  F  I  A  K  S  F  I  K  Q  G  H  V  V  L  A  H  S  R  S  D  Y  S  L  I  A  Q  S  L  N  V  H  F  F  Q  D  P  N  D  L  C  E  Q  H  P  D  V  I  L  L  C  T  S  I  N  S  L  E  N  V  I  R  S  L  P  I  Q  K  L  K  R  N  T  L  F  V  D  V  L  S  V  K  E  F  P  K  N  I  F  L  Q  S  L  P  K  E  F  D  I  L  C  T  H  P  M  F  G  P  T  S  G  K  D  N  W  K  G  L  P  F  M  Y  D  K  V  R  I  G  Q  E  E  S  R  I  K  R  V  N  N  F  I  N  I  F  V  K  E  G  C  R  M  V  E  M  S  C  S  E  H  D  K  Y  A  A  G  S  Q  F  I  T  H  T  I  G  R  M  L  Q  R  L  G  T  Q  T  T  P  I  N  T  K  G  Y  E  S  L  L  N  L  M  E  N  T  T  S  D  S  F  D  L  Y  C  G  L  F  M  Y  N  N  N  S  M  E  V  L  E  K  L  D  A  A  L  D  S  L  K  R  E  L  F  G  Q  V  L  Q  K  L  E  K  R  V  E  K  G  S  R  L  A  L  P  T  P  D  F  S  K  K  I  E  K  L  K  V  E  R  K  E  L  </first_frame>
            <second_frame>  F  F  L  C  V  F  S  L  K  V  I  S  F  L  L  S  L  I  K  E  K  K  *  *  E  G  E  N  K  F  H  I  Q  P  C  F  P  F  H  L  Y  N  L  T  I  F  N  L  N  H  L  R  R  Y  S  S  I  I  I  T  S  I  Q  L  F  Q  L  G  F  I  T  T  A  Y  S  S  L  S  V  P  K  I  A  T  *  L  Q  P  P  P  I  T  T  M  S  I  L  M  T  I  *  P  D  L  I  N  F  Q  N  H  *  V  F  R  I  S  K  K  I  H  H  *  I  P  S  Y  V  P  I  T  S  S  K  *  L  S  *  A  L  E  T  L  D  N  L  L  P  N  P  L  S  N  K  A  M  L  Y  *  L  I  H  V  V  I  I  P  S  *  H  N  P  L  M  S  T  S  F  K  I  L  M  T  Y  V  N  N  I  L  T  L  F  Y  F  A  H  P  S  I  H  S  K  T  S  F  V  P  F  P  S  K  S  L  N  V  T  H  F  S  *  T  Y  Y  Q  S  K  N  S  R  K  T  F  F  F  N  H  Y  Q  K  N  L  I  F  C  V  L  I  L  C  L  V  Q  Q  V  V  K  T  I  G  K  D  Y  H  L  C  M  T  K  L  E  L  D  K  K  S  Q  E  L  K  E  S  T  I  L  S  T  F  L  *  K  K  V  V  E  W  L  K  *  V  V  V  N  M  T  S  M  L  L  D  H  N  L  L  H  I  L  L  E  E  C  Y  K  D  L  G  H  K  Q  L  L  *  T  Q  K  D  M  K  V  C  *  I  *  W  R  I  Q  L  V  I  V  L  I  C  I  V  V  C  L  C  I  T  I  I  Q  W  R  C  *  R  N  *  M  Q  H  W  I  V  *  K  G  N  Y  L  D  K  F  F  K  S  W  R  K  E  W  K  R  E  V  G  *  L  Y  L  L  L  I  L  V  R  K  L  K  N  *  K  L  R  G  R  N  * </second_frame>
            <third_frame>   S  F  F  V  F  L  V  *  K  L  F  L  F  F  S  L  L  L  K  K  K  N  N  K  R  E  K  I  N  F  T  F  N  H  V  F  P  F  I  Y  T  I  *  Q  Y  S  I  S  I  I  F  V  A  T  L  Q  S  S  S  P  A  F  N  Y  F  N  S  V  S  S  P  P  P  T  L  P  S  P  C  P  K  *  R  L  N  Y  S  H  H  Q  *  Q  L  C  R  S  *  *  Q  S  N  Q  T  *  *  I  F  K  I  I  K  Y  F  E  Y  R  R  K  Y  I  I  K  S  P  L  M  F  Q  *  Q  A  Q  N  S  Y  H  R  L  W  K  L  W  T  I  Y  C  Q  I  L  Y  Q  T  R  P  C  C  I  S  S  F  T  *  *  L  F  P  H  S  T  I  P  *  C  P  L  L  S  R  S  *  *  L  M  *  T  T  S  *  R  Y  F  T  L  H  I  H  Q  F  T  R  K  R  H  S  F  P  S  H  P  K  A  *  T  *  H  T  F  R  R  R  I  I  S  Q  R  I  P  E  K  H  F  S  S  I  T  T  K  R  I  *  Y  F  V  Y  S  S  Y  V  W  S  N  K  W  *  R  Q  L  E  R  T  T  I  Y  V  *  Q  S  *  N  W  T  R  R  V  K  N  *  K  S  Q  Q  F  Y  Q  H  F  C  K  R  R  L  *  N  G  *  N  E  L  *  *  T  *  Q  V  C  C  W  I  T  I  Y  Y  T  Y  Y  W  K  N  V  T  K  T  W  D  T  N  N  S  Y  K  H  K  R  I  *  K  F  V  E  F  D  G  E  Y  N  *  *  *  F  *  F  V  L  W  F  V  Y  V  *  Q  *  F  N  G  G  V  R  E  T  R  C  S  I  G  *  F  E  K  G  I  I  W  T  S  S  S  K  V  G  E  K  S  G  K  G  K  *  V  S  F  T  Y  S  *  F  *  *  E  N  *  K  I  E  S  *  E  E  G  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45426" stop="46598"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISHSTMFSLSSIQSNNIQSQSSSSLLFNHHHQHSTISTRFHHHRLLFPLRAQNSDLTTATTNNNYVDLDDNLTRLDKFSKSLSISNIEENTSLNPLLCSNNKLKIAIIGFGNFGQFIAKSFIKQGHVVLAHSRSDYSLIAQSLNVHFFQDPNDLCEQHPDVILLCTSINSLENVIRSLPIQKLKRNTLFVDVLSVKEFPKNIFLQSLPKEFDILCTHPMFGPTSGKDNWKGLPFMYDKVRIGQEESRIKRVNNFINIFVKEGCRMVEMSCSEHDKYAAGSQFITHTIGRMLQRLGTQTTPINTKGYESLLNLMENTTSDSFDLYCGLFMYNNNSMEVLEKLDAALDSLKRELFGQVLQKLEKRVEKGSRLALPTPDFSKKIEKLKVERKEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47357" PGL_stop="46082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47357" e_stop="47315"/>
            <exon e_start="46514" e_stop="46082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.674"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.674">
            <gDNA_exon_boundary e_start="47357" e_stop="47315" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47314" i_stop="46515" i_length="800"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="46514" e_stop="46082" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47357" stop="47315"/>
              <exon start="46514" stop="46082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGAGTTATTTTGTATAAATTGATTCATTCAATTTTTTTTTTG : TCTTTTCTCCAACTTTTGAAGAACTTGTCCAAATAATTCCCTTTTCAAACTATCCAATGCTGCATCTAGTTTCTCTAACACCTCCATTGAATTATTGTTATACATAAACAAACCACAATACAAATCAAAACTATCACTAGTTGTATTCTCCATCAAATTCAACAAACTTTCATATCCTTTTGTGTTTATAGGAGTTGTTTGTGTCCCAAGTCTTTGTAACATTCTTCCAATAGTATGTGTAATAAATTGTGATCCAGCAGCATACTTGTCATGTTCACTACAACTCATTTCAACCATTCTACAACCTTCTTTTACAAAAATGTTGATAAAATTGTTGACTCTTTTAATTCTTGACTCTTCTTGTCCAATTCTAACTTTGTCATACATAAATGGTAGTCCTTTCCAATTGTCTTTACCACTTGTTGGACCAAAC</gDNA_template>
            <first_frame> R  S  Y  F  V  *  I  D  S  F  N  F  F  F   : V  F  S  P  T  F  E  E  L  V  Q  I  I  P  F  S  N  Y  P  M  L  H  L  V  S  L  T  P  P  L  N  Y  C  Y  T  *  T  N  H  N  T  N  Q  N  Y  H  *  L  Y  S  P  S  N  S  T  N  F  H  I  L  L  C  L  *  E  L  F  V  S  Q  V  F  V  T  F  F  Q  *  Y  V  *  *  I  V  I  Q  Q  H  T  C  H  V  H  Y  N  S  F  Q  P  F  Y  N  L  L  L  Q  K  C  *  *  N  C  *  L  F  *  F  L  T  L  L  V  Q  F  *  L  C  H  T  *  M  V  V  L  S  N  C  L  Y  H  L  L  D  Q   </first_frame>
            <second_frame>  G  V  I  L  Y  K  L  I  H  S  I  F  F  L  :  S  F  L  Q  L  L  K  N  L  S  K  *  F  P  F  Q  T  I  Q  C  C  I  *  F  L  *  H  L  H  *  I  I  V  I  H  K  Q  T  T  I  Q  I  K  T  I  T  S  C  I  L  H  Q  I  Q  Q  T  F  I  S  F  C  V  Y  R  S  C  L  C  P  K  S  L  *  H  S  S  N  S  M  C  N  K  L  *  S  S  S  I  L  V  M  F  T  T  T  H  F  N  H  S  T  T  F  F  Y  K  N  V  D  K  I  V  D  S  F  N  S  *  L  F  L  S  N  S  N  F  V  I  H  K  W  *  S  F  P  I  V  F  T  T  C  W  T  K  </second_frame>
            <third_frame>   E  L  F  C  I  N  *  F  I  Q  F  F  F  C :   L  F  S  N  F  *  R  T  C  P  N  N  S  L  F  K  L  S  N  A  A  S  S  F  S  N  T  S  I  E  L  L  L  Y  I  N  K  P  Q  Y  K  S  K  L  S  L  V  V  F  S  I  K  F  N  K  L  S  Y  P  F  V  F  I  G  V  V  C  V  P  S  L  C  N  I  L  P  I  V  C  V  I  N  C  D  P  A  A  Y  L  S  C  S  L  Q  L  I  S  T  I  L  Q  P  S  F  T  K  M  L  I  K  L  L  T  L  L  I  L  D  S  S  C  P  I  L  T  L  S  Y  I  N  G  S  P  F  Q  L  S  L  P  L  V  G  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46495" stop="46082"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTCPNNSLFKLSNAASSFSNTSIELLLYINKPQYKSKLSLVVFSIKFNKLSYPFVFIGVVCVPSLCNILPIVCVINCDPAAYLSCSLQLISTILQPSFTKMLIKLLTLLILDSSCPILTLSYINGSPFQLSLPLVGPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="55529" PGL_stop="54802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55529" e_stop="54802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="55529" e_stop="54802" e_length="728"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55529" stop="55043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55102" stop="54802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACTCCATACCCATAACATCTCCAGCCTGATCCGTTTTGGATCCTTCCCGGCCACCCCCAAATCACCACCGCCCGTGCCACTCCCCAATACTCATCTCATGTTAACCCATGGCAAAGCCGATATCTTTAAACCCAAAAACCTTTCAGGCTACCATACTACCAAATACACCCCCTTTCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTGTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGAATGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCTAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGAAGTATGAGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGAAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCCCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGTTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTTAAGCAAGCCCCCCGTGCTTGGTACACACGTTTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  S  I  P  I  T  S  P  A  *  S  V  L  D  P  S  R  P  P  P  N  H  H  R  P  C  H  S  P  I  L  I  S  C  *  P  M  A  K  P  I  S  L  N  P  K  T  F  Q  A  T  I  L  P  N  T  P  P  F  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  V  V  P  K  P  H  G  R  H  P  V  E  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  K  Y  E  L  D  Y  S  E  T  F  S  P  V  I  R  K  E  T  I  R  L  V  L  S  L  A  V  P  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  F  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  T   </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  *  H  L  Q  P  D  P  F  W  I  L  P  G  H  P  Q  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  P  W  Q  S  R  Y  L  *  T  Q  K  P  F  R  L  P  Y  Y  Q  I  H  P  L  S  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  L  L  Y  L  S  P  M  G  G  T  Q  W  N  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  L  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  S  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  P  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  L  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  L  S  K  P  P  V  L  G  T  H  V  *  K  R  </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  L  H  T  H  N  I  S  S  L  I  R  F  G  S  F  P  A  T  P  K  S  P  P  P  V  P  L  P  N  T  H  L  M  L  T  H  G  K  A  D  I  F  K  P  K  N  L  S  G  Y  H  T  T  K  Y  T  P  F  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  C  C  T  *  A  P  W  A  A  P  S  G  M  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  *  V  Q  G  S  F  G  C  *  R  L  Q  S  E  V  *  A  *  L  L  R  D  I  Q  S  C  Y  S  E  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  V  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  S  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  *  A  S  P  P  C  L  V  H  T  F  E  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55373" stop="54804"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMAKPISLNPKTFQATILPNTPPFDSEPTTYSVASKNAYWRHAMDDEFKALTDQKTWVVVPKPHGRHPVECKWVYKIKHNADGSISRYKARLVAKGYNQKYELDYSETFSPVIRKETIRLVLSLAVPNNWLINQLDVSNAFLHGMFDETIYMTQPPGYVDPRFPQHVCKLQKSLYGLKQAPRAWYTRLKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="66102" PGL_stop="66733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66102" e_stop="66169"/>
            <exon e_start="66258" e_stop="66733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66102" e_stop="66169" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66170" i_stop="66257" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66258" e_stop="66733" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66102" stop="66169"/>
              <exon start="66258" stop="66733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTTTGGAAAGAAGTTGGTTGATAGACTTAGAGATATTGGTGAACCATTTATCGCTCTCCATTTAAG : ATACGAGAAAGACATGCTAGCGTTTACTGGCTGCAGCAACAATTTGACTATTGAAGAGGCTGAAGAACTTCGTACGATGAGGTATGAAGTGAAACATTGGAAGGAGAAAGAGATAGACAGCAAGGAAAAGCGACTCCAGGGAGGCTGCCCCATGTCCCCTAGGGAGGCTGCTTTATTTCTCAAAGCGATGGGATATCTGTCCACGACCAGAATATACATTGTTGCAGGGGAAATTTATGGCAACAACAGCATGGATGAATTCCGTTCTCATTACCCGAATGTGTACTCTCACTCAACCCTTGCAACAAATGAAGAACTTGAGGCTTTCAAGAATTATCAAAACCGTCTTGCTGCAGTAGACTACATGGTAGCCCTTGAAAGCGATGTTTTTGCTTACACTTACGATGGCAATATGGCGAAGGCCGTGCAAGGTCATAGACGATTTGAAGGATTTCGGAAGACCATTAACCCGGACA</gDNA_template>
            <first_frame> E  F  G  K  K  L  V  D  R  L  R  D  I  G  E  P  F  I  A  L  H  L  R :   Y  E  K  D  M  L  A  F  T  G  C  S  N  N  L  T  I  E  E  A  E  E  L  R  T  M  R  Y  E  V  K  H  W  K  E  K  E  I  D  S  K  E  K  R  L  Q  G  G  C  P  M  S  P  R  E  A  A  L  F  L  K  A  M  G  Y  L  S  T  T  R  I  Y  I  V  A  G  E  I  Y  G  N  N  S  M  D  E  F  R  S  H  Y  P  N  V  Y  S  H  S  T  L  A  T  N  E  E  L  E  A  F  K  N  Y  Q  N  R  L  A  A  V  D  Y  M  V  A  L  E  S  D  V  F  A  Y  T  Y  D  G  N  M  A  K  A  V  Q  G  H  R  R  F  E  G  F  R  K  T  I  N  P  D  </first_frame>
            <second_frame>  S  L  E  R  S  W  L  I  D  L  E  I  L  V  N  H  L  S  L  S  I  *   : D  T  R  K  T  C  *  R  L  L  A  A  A  T  I  *  L  L  K  R  L  K  N  F  V  R  *  G  M  K  *  N  I  G  R  R  K  R  *  T  A  R  K  S  D  S  R  E  A  A  P  C  P  L  G  R  L  L  Y  F  S  K  R  W  D  I  C  P  R  P  E  Y  T  L  L  Q  G  K  F  M  A  T  T  A  W  M  N  S  V  L  I  T  R  M  C  T  L  T  Q  P  L  Q  Q  M  K  N  L  R  L  S  R  I  I  K  T  V  L  L  Q  *  T  T  W  *  P  L  K  A  M  F  L  L  T  L  T  M  A  I  W  R  R  P  C  K  V  I  D  D  L  K  D  F  G  R  P  L  T  R  T </second_frame>
            <third_frame>   V  W  K  E  V  G  *  *  T  *  R  Y  W  *  T  I  Y  R  S  P  F  K  :  I  R  E  R  H  A  S  V  Y  W  L  Q  Q  Q  F  D  Y  *  R  G  *  R  T  S  Y  D  E  V  *  S  E  T  L  E  G  E  R  D  R  Q  Q  G  K  A  T  P  G  R  L  P  H  V  P  *  G  G  C  F  I  S  Q  S  D  G  I  S  V  H  D  Q  N  I  H  C  C  R  G  N  L  W  Q  Q  Q  H  G  *  I  P  F  S  L  P  E  C  V  L  S  L  N  P  C  N  K  *  R  T  *  G  F  Q  E  L  S  K  P  S  C  C  S  R  L  H  G  S  P  *  K  R  C  F  C  L  H  L  R  W  Q  Y  G  E  G  R  A  R  S  *  T  I  *  R  I  S  E  D  H  *  P  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66102" stop="66169"/>
                    <exon start="66258" stop="66732"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFGKKLVDRLRDIGEPFIALHLRYEKDMLAFTGCSNNLTIEEAEELRTMRYEVKHWKEKEIDSKEKRLQGGCPMSPREAALFLKAMGYLSTTRIYIVAGEIYGNNSMDEFRSHYPNVYSHSTLATNEELEAFKNYQNRLAAVDYMVALESDVFAYTYDGNMAKAVQGHRRFEGFRKTINPD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="66772" PGL_stop="67440"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66772" e_stop="67440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66772" e_stop="67440" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66772" stop="67440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCATCACTTGAATCAAAACCAACAATAATACTGATACATTTTCTTCATTTTTTCAGGTTCAACTTTGTAAGATTGATCGACTCGTTAGATAAAGGTGAAATCTCTTGGGAAGAGTTTGCTTCAAAAGTTAAGGCCTTACAATCCAACAGATTAGGAGCACCTTACCTAAGACAAGCCGGTGAATCACCACGATTAGAGGAGAACTTTTACGCAAATCCTTTACCAGGTTGCTTGTGTAATCGATCACACGAAGAAGCCAGTAAACAACTCAACAAGAGACCAAGACTGAGGGTTGCTTCACAAAGATAGGTACTTTCAATGATCATAATGTGGTAGATTAGTTCAATATCAATATACATGTTCTACAAATGGCCTATAAGGGGTTGCCAGAAGTCGGGTTTTTCATCGCCCTTCACACTGCGCAGCGAGCAGAAAGAAAGAGAGATTGTTGTAAGAAGCAAAGCAGTACTTGGAAGCAGAGATATGATGGTTTATAAGATGGACAAAAGAAAGCATATACACAAACCAGAGAGATGTACTCAAAAATCATTCTTTAGGGTGGAATATAAAAATTCATTTATTTTTTTTATTTTTTTTTTCTGAGTTAGTTTTATGATTTAGGTTCAACAAGGATTGATCATATATGTATTACCAATTCATGAAAAA</gDNA_template>
            <first_frame> F  S  S  L  E  S  K  P  T  I  I  L  I  H  F  L  H  F  F  R  F  N  F  V  R  L  I  D  S  L  D  K  G  E  I  S  W  E  E  F  A  S  K  V  K  A  L  Q  S  N  R  L  G  A  P  Y  L  R  Q  A  G  E  S  P  R  L  E  E  N  F  Y  A  N  P  L  P  G  C  L  C  N  R  S  H  E  E  A  S  K  Q  L  N  K  R  P  R  L  R  V  A  S  Q  R  *  V  L  S  M  I  I  M  W  *  I  S  S  I  S  I  Y  M  F  Y  K  W  P  I  R  G  C  Q  K  S  G  F  S  S  P  F  T  L  R  S  E  Q  K  E  R  E  I  V  V  R  S  K  A  V  L  G  S  R  D  M  M  V  Y  K  M  D  K  R  K  H  I  H  K  P  E  R  C  T  Q  K  S  F  F  R  V  E  Y  K  N  S  F  I  F  F  I  F  F  F  *  V  S  F  M  I  *  V  Q  Q  G  L  I  I  Y  V  L  P  I  H  E  K </first_frame>
            <second_frame>  F  H  H  L  N  Q  N  Q  Q  *  Y  *  Y  I  F  F  I  F  S  G  S  T  L  *  D  *  S  T  R  *  I  K  V  K  S  L  G  K  S  L  L  Q  K  L  R  P  Y  N  P  T  D  *  E  H  L  T  *  D  K  P  V  N  H  H  D  *  R  R  T  F  T  Q  I  L  Y  Q  V  A  C  V  I  D  H  T  K  K  P  V  N  N  S  T  R  D  Q  D  *  G  L  L  H  K  D  R  Y  F  Q  *  S  *  C  G  R  L  V  Q  Y  Q  Y  T  C  S  T  N  G  L  *  G  V  A  R  S  R  V  F  H  R  P  S  H  C  A  A  S  R  K  K  E  R  L  L  *  E  A  K  Q  Y  L  E  A  E  I  *  W  F  I  R  W  T  K  E  S  I  Y  T  N  Q  R  D  V  L  K  N  H  S  L  G  W  N  I  K  I  H  L  F  F  L  F  F  F  S  E  L  V  L  *  F  R  F  N  K  D  *  S  Y  M  Y  Y  Q  F  M  K   </second_frame>
            <third_frame>   F  I  T  *  I  K  T  N  N  N  T  D  T  F  S  S  F  F  Q  V  Q  L  C  K  I  D  R  L  V  R  *  R  *  N  L  L  G  R  V  C  F  K  S  *  G  L  T  I  Q  Q  I  R  S  T  L  P  K  T  S  R  *  I  T  T  I  R  G  E  L  L  R  K  S  F  T  R  L  L  V  *  S  I  T  R  R  S  Q  *  T  T  Q  Q  E  T  K  T  E  G  C  F  T  K  I  G  T  F  N  D  H  N  V  V  D  *  F  N  I  N  I  H  V  L  Q  M  A  Y  K  G  L  P  E  V  G  F  F  I  A  L  H  T  A  Q  R  A  E  R  K  R  D  C  C  K  K  Q  S  S  T  W  K  Q  R  Y  D  G  L  *  D  G  Q  K  K  A  Y  T  Q  T  R  E  M  Y  S  K  I  I  L  *  G  G  I  *  K  F  I  Y  F  F  Y  F  F  F  L  S  *  F  Y  D  L  G  S  T  R  I  D  H  I  C  I  T  N  S  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66772" stop="67083"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSLESKPTIILIHFLHFFRFNFVRLIDSLDKGEISWEEFASKVKALQSNRLGAPYLRQAGESPRLEENFYANPLPGCLCNRSHEEASKQLNKRPRLRVASQR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67111" stop="67377"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSISIYMFYKWPIRGCQKSGFSSPFTLRSEQKEREIVVRSKAVLGSRDMMVYKMDKRKHIHKPERCTQKSFFRVEYKNSFIFFIFFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="70992" PGL_stop="71417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70992" e_stop="71417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="70992" e_stop="71417" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70992" stop="71417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U347000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCACAAAATGATATAATAGTGAAAAGTGAAAACTGCCTACTCATTACAACAGTGAAGAATCTATATAACATCCTTTAACCATGAGATGCACAATCAAATTAACTGATTTTGAGTTACAAATGGGACTGGTTTACAAAGATCATGCACTTACAAAAACACTATGGATCTTTCCTCAAGAACCTATAATTTGTCGGATTAATTACAACGAAATCTACGTTTAAGTAGTAACTTCTGCAGAAAACAAGGTCCTGAGAATTGGCATTATGGCACTACTACCACATCGATGGTACATAAACCTGCTCTTTGAGATTCTGTGTGGCGCTTTCAGTAGGAAAACCTCTAACAGCACCTATTGTCCACTGGGATATTATGCCTGCTGCAATAGCAAAGCGAAGCTGTCTCTCTAGAACATCTTGATCGTGGTA</gDNA_template>
            <first_frame> A  T  K  *  Y  N  S  E  K  *  K  L  P  T  H  Y  N  S  E  E  S  I  *  H  P  L  T  M  R  C  T  I  K  L  T  D  F  E  L  Q  M  G  L  V  Y  K  D  H  A  L  T  K  T  L  W  I  F  P  Q  E  P  I  I  C  R  I  N  Y  N  E  I  Y  V  *  V  V  T  S  A  E  N  K  V  L  R  I  G  I  M  A  L  L  P  H  R  W  Y  I  N  L  L  F  E  I  L  C  G  A  F  S  R  K  T  S  N  S  T  Y  C  P  L  G  Y  Y  A  C  C  N  S  K  A  K  L  S  L  *  N  I  L  I  V  V </first_frame>
            <second_frame>  P  Q  N  D  I  I  V  K  S  E  N  C  L  L  I  T  T  V  K  N  L  Y  N  I  L  *  P  *  D  A  Q  S  N  *  L  I  L  S  Y  K  W  D  W  F  T  K  I  M  H  L  Q  K  H  Y  G  S  F  L  K  N  L  *  F  V  G  L  I  T  T  K  S  T  F  K  *  *  L  L  Q  K  T  R  S  *  E  L  A  L  W  H  Y  Y  H  I  D  G  T  *  T  C  S  L  R  F  C  V  A  L  S  V  G  K  P  L  T  A  P  I  V  H  W  D  I  M  P  A  A  I  A  K  R  S  C  L  S  R  T  S  *  S  W   </second_frame>
            <third_frame>   H  K  M  I  *  *  *  K  V  K  T  A  Y  S  L  Q  Q  *  R  I  Y  I  T  S  F  N  H  E  M  H  N  Q  I  N  *  F  *  V  T  N  G  T  G  L  Q  R  S  C  T  Y  K  N  T  M  D  L  S  S  R  T  Y  N  L  S  D  *  L  Q  R  N  L  R  L  S  S  N  F  C  R  K  Q  G  P  E  N  W  H  Y  G  T  T  T  T  S  M  V  H  K  P  A  L  *  D  S  V  W  R  F  Q  *  E  N  L  *  Q  H  L  L  S  T  G  I  L  C  L  L  Q  *  Q  S  E  A  V  S  L  E  H  L  D  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026P14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73820" PGL_stop="71471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73820" e_stop="73061"/>
            <exon e_start="71957" e_stop="71471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="0.996"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="73820" e_stop="73061" e_length="760"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73060" i_stop="71958" i_length="1103"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="71957" e_stop="71471" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73820" stop="73075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73089" stop="73061"/>
              <exon start="71957" stop="71471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATAGCAAAAACACCATGGCAACAATACATTTTCTTCCTCAATCTCTTCCTCATCATCATTCTCACAATTCACTAAACCCCACCATTTTCTTCTCCTCCTCCAAATTTCCTTACAGAACAAATCCACCCAAGTCCACCACCAATGACCACCCCACCACTACCCAAGAACCCCCTACCCCCTCTCGCCGTGGCCGTAAAAAATCATCCACCCCCACAACTTCAAAAAAATCAAGAACCCCAAAAGATTCAAACTTTGATATCAACATTGCAGAATCCAACACCCAAATGGAAGAAATTGATGATTATGATGATGGGGTTGATTTTCCATACCCAAACCCACCTTTGGTCTGTTGTTTTGGTGCAGCGCAGAAGGAGTTTGTGCCAACAGTGAGAGTATCACCCGAGCAAATGGATAAAGATAAGTATTCAGAGTGGAAAATGTTGCAGTGGAATCCACCTGAGTTTGTTAGAGCTCCTGGTGGACCTCCATCTAATGTTGCTATATCTCATGTTAGGCTTGGTGGTAGAGCTGCATTTATGGGGAAAGTTGGGAGTGATGAGTTAGGACAAGAAATGGTTTTGTTAATGAATAAAGAGAAAGTGCAAACAAGGGCTGTCAAATTTAGTGATAGTATGAGGACTGGATGTAGTTATATGGAAATTAAGTTTAAAGATGGGAAAATGAGGGTGGAGAAAGTTCAAGACTCTGCTGAGGATTCACTGCTTAGCTCCGAATTGAATCTTGATGTTCTGAAAGAG : GCTAGGATGTTCCACTTTAATTCTGAAGTCTTGACATCTTCATCTATGCGTTCAACTCTTTTTAAAGCAATTACATTGTCAAAGAAGTTTGGTGGTCTTGTATTTTTTGACTTAAATCTGCCATTGCCTCTGTGGAGATCACGTGACGAAACAAGGGATTTGATCAAGGAAGCCTGGCAGCAAGCTAACATCATTGAGGTTTCGAGGCAAGAGCTTGAATTTCTTCTTGACGAAGAGCATTACGAGAGGAAAAGGAATTATAGACCTCAATACTTTGCGGAGAATTACGAACAAACCAAACAAAGAAGAAATTATTATCACTATACTCCTGAGGAAATTGCTCCCTTGTGGCACGACGGACTGAAACTTCTGTTTGTTACAGATGGGACACTTAGGATTCATTACTATTCCCCTTCTTTTGATGGGGTGGTTGTTGGTACAGAAGATGTGCTCATAACACCGTTTACTTGTGATAGAACTGGTTCTG</gDNA_template>
            <first_frame> T  *  Q  K  H  H  G  N  N  T  F  S  S  S  I  S  S  S  S  S  F  S  Q  F  T  K  P  H  H  F  L  L  L  L  Q  I  S  L  Q  N  K  S  T  Q  V  H  H  Q  *  P  P  H  H  Y  P  R  T  P  Y  P  L  S  P  W  P  *  K  I  I  H  P  H  N  F  K  K  I  K  N  P  K  R  F  K  L  *  Y  Q  H  C  R  I  Q  H  P  N  G  R  N  *  *  L  *  *  W  G  *  F  S  I  P  K  P  T  F  G  L  L  F  W  C  S  A  E  G  V  C  A  N  S  E  S  I  T  R  A  N  G  *  R  *  V  F  R  V  E  N  V  A  V  E  S  T  *  V  C  *  S  S  W  W  T  S  I  *  C  C  Y  I  S  C  *  A  W  W  *  S  C  I  Y  G  E  S  W  E  *  *  V  R  T  R  N  G  F  V  N  E  *  R  E  S  A  N  K  G  C  Q  I  *  *  *  Y  E  D  W  M  *  L  Y  G  N  *  V  *  R  W  E  N  E  G  G  E  S  S  R  L  C  *  G  F  T  A  *  L  R  I  E  S  *  C  S  E  R   : G  *  D  V  P  L  *  F  *  S  L  D  I  F  I  Y  A  F  N  S  F  *  S  N  Y  I  V  K  E  V  W  W  S  C  I  F  *  L  K  S  A  I  A  S  V  E  I  T  *  R  N  K  G  F  D  Q  G  S  L  A  A  S  *  H  H  *  G  F  E  A  R  A  *  I  S  S  *  R  R  A  L  R  E  E  K  E  L  *  T  S  I  L  C  G  E  L  R  T  N  Q  T  K  K  K  L  L  S  L  Y  S  *  G  N  C  S  L  V  A  R  R  T  E  T  S  V  C  Y  R  W  D  T  *  D  S  L  L  F  P  F  F  *  W  G  G  C  W  Y  R  R  C  A  H  N  T  V  Y  L  *  *  N  W  F   </first_frame>
            <second_frame>  H  S  K  N  T  M  A  T  I  H  F  L  P  Q  S  L  P  H  H  H  S  H  N  S  L  N  P  T  I  F  F  S  S  S  K  F  P  Y  R  T  N  P  P  K  S  T  T  N  D  H  P  T  T  T  Q  E  P  P  T  P  S  R  R  G  R  K  K  S  S  T  P  T  T  S  K  K  S  R  T  P  K  D  S  N  F  D  I  N  I  A  E  S  N  T  Q  M  E  E  I  D  D  Y  D  D  G  V  D  F  P  Y  P  N  P  P  L  V  C  C  F  G  A  A  Q  K  E  F  V  P  T  V  R  V  S  P  E  Q  M  D  K  D  K  Y  S  E  W  K  M  L  Q  W  N  P  P  E  F  V  R  A  P  G  G  P  P  S  N  V  A  I  S  H  V  R  L  G  G  R  A  A  F  M  G  K  V  G  S  D  E  L  G  Q  E  M  V  L  L  M  N  K  E  K  V  Q  T  R  A  V  K  F  S  D  S  M  R  T  G  C  S  Y  M  E  I  K  F  K  D  G  K  M  R  V  E  K  V  Q  D  S  A  E  D  S  L  L  S  S  E  L  N  L  D  V  L  K  E  :  A  R  M  F  H  F  N  S  E  V  L  T  S  S  S  M  R  S  T  L  F  K  A  I  T  L  S  K  K  F  G  G  L  V  F  F  D  L  N  L  P  L  P  L  W  R  S  R  D  E  T  R  D  L  I  K  E  A  W  Q  Q  A  N  I  I  E  V  S  R  Q  E  L  E  F  L  L  D  E  E  H  Y  E  R  K  R  N  Y  R  P  Q  Y  F  A  E  N  Y  E  Q  T  K  Q  R  R  N  Y  Y  H  Y  T  P  E  E  I  A  P  L  W  H  D  G  L  K  L  L  F  V  T  D  G  T  L  R  I  H  Y  Y  S  P  S  F  D  G  V  V  V  G  T  E  D  V  L  I  T  P  F  T  C  D  R  T  G  S  </second_frame>
            <third_frame>   I  A  K  T  P  W  Q  Q  Y  I  F  F  L  N  L  F  L  I  I  I  L  T  I  H  *  T  P  P  F  S  S  P  P  P  N  F  L  T  E  Q  I  H  P  S  P  P  P  M  T  T  P  P  L  P  K  N  P  L  P  P  L  A  V  A  V  K  N  H  P  P  P  Q  L  Q  K  N  Q  E  P  Q  K  I  Q  T  L  I  S  T  L  Q  N  P  T  P  K  W  K  K  L  M  I  M  M  M  G  L  I  F  H  T  Q  T  H  L  W  S  V  V  L  V  Q  R  R  R  S  L  C  Q  Q  *  E  Y  H  P  S  K  W  I  K  I  S  I  Q  S  G  K  C  C  S  G  I  H  L  S  L  L  E  L  L  V  D  L  H  L  M  L  L  Y  L  M  L  G  L  V  V  E  L  H  L  W  G  K  L  G  V  M  S  *  D  K  K  W  F  C  *  *  I  K  R  K  C  K  Q  G  L  S  N  L  V  I  V  *  G  L  D  V  V  I  W  K  L  S  L  K  M  G  K  *  G  W  R  K  F  K  T  L  L  R  I  H  C  L  A  P  N  *  I  L  M  F  *  K  R :   L  G  C  S  T  L  I  L  K  S  *  H  L  H  L  C  V  Q  L  F  L  K  Q  L  H  C  Q  R  S  L  V  V  L  Y  F  L  T  *  I  C  H  C  L  C  G  D  H  V  T  K  Q  G  I  *  S  R  K  P  G  S  K  L  T  S  L  R  F  R  G  K  S  L  N  F  F  L  T  K  S  I  T  R  G  K  G  I  I  D  L  N  T  L  R  R  I  T  N  K  P  N  K  E  E  I  I  I  T  I  L  L  R  K  L  L  P  C  G  T  T  D  *  N  F  C  L  L  Q  M  G  H  L  G  F  I  T  I  P  L  L  L  M  G  W  L  L  V  Q  K  M  C  S  *  H  R  L  L  V  I  E  L  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73819" stop="73061"/>
                    <exon start="71957" stop="71472"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSKNTMATIHFLPQSLPHHHSHNSLNPTIFFSSSKFPYRTNPPKSTTNDHPTTTQEPPTPSRRGRKKSSTPTTSKKSRTPKDSNFDINIAESNTQMEEIDDYDDGVDFPYPNPPLVCCFGAAQKEFVPTVRVSPEQMDKDKYSEWKMLQWNPPEFVRAPGGPPSNVAISHVRLGGRAAFMGKVGSDELGQEMVLLMNKEKVQTRAVKFSDSMRTGCSYMEIKFKDGKMRVEKVQDSAEDSLLSSELNLDVLKEARMFHFNSEVLTSSSMRSTLFKAITLSKKFGGLVFFDLNLPLPLWRSRDETRDLIKEAWQQANIIEVSRQELEFLLDEEHYERKRNYRPQYFAENYEQTKQRRNYYHYTPEEIAPLWHDGLKLLFVTDGTLRIHYYSPSFDGVVVGTEDVLITPFTCDRTGS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="78861" PGL_stop="77287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78861" e_stop="77287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="78861" e_stop="77287" e_length="1575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78861" stop="77287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGAGTAAAATCTTATTCAATTTTCACAACCTTCAAAGCCAAATCCACCACTCCCCATCACCCCCCACCCCCCCCATCACTCACCAACCTCTGTTACCCATTTCCCCAAGCAATTCCCCTCTACTCCTTTCTCAATACTCATCACAAACCCTAGAAATTCTTTGAGATAAAATACCTCAAAATCATATAAAAATTTAATCTTTCTTGAAATTCTATACATGGGTTCATTTAAGAAGAAATCTTGATAAGTCCCAGTTGAAAAAAGAGTACAAAGTTTACAGCTTTCTATAGCTAAAGTTGAGCCAAGATCAAGAATGGGTACTTTGTCAGCTTCCAGGTATCTTATGGTGTTGTTTATCTTCTGTTTTTACTTCAGAACTATCCAATCTGAGGAGAAAATGTCATTTGGTTTTGGAGATTTTGGTAAAGATTCAAACTTTGAGTCTCAGATTGCACTTTATGGTGATGCTAAGGTTGTTAATGGTGGTATACAAATGAGTGGTTCAATGGGTTTTAGTGCTGGAAGAATCTTGAACAAGAAACCCTTTAAGCTAATTGATGGAAATCCAAGAAAAATGGTGTCTTTTTCATTGCATTTTGTGTTTTCATTGTCAAGAGAAAATGGGGATGGATTTGCTTTTGTGATGGTACCTATTGGATATCCTTTTGATGTGTTTGATGGTGGCTCATTTGGGCTATTGGGTAATAGAAAAATGAAGTTTCTTGCTGTAGAATTTGATACATTTATGGATGAGAAATATGGTGATGTGAATGATAACCATGTTGGTGTTGATTTAAGCAGCTTTATATCTGTGAAAGTGAGTAATGTTAGTTCTGTTAAATTGGGGCTAATGAATAGTGGTGAAAAGATGCAATCTTGGATTGATTATGAAGCAAGTTCAAAGAGATTAGAAATCAGGTTGAGCAAATTAGGTGACATAAAGCCAGTTGATACATTACTTTCTTGCCCTATTGATATGTCACAAATGTGGAAAGAGGATGAATTGTTTGTGGGGTTAAGTTCTTCAAGTGGGAATTCCACTCAGAAATGCAATATCTATTCATTGAGCTTTAACACAAGGACTGCACCTCATTGGATGCACTCAGAACCATTAGATCCACAAGCATTTGTTGAGAAAAAAGAAGAGATGAAAGTTCATAGCAGAAGTGATTGTGCTTTGAGGATTCTTGGTGCATTGCTTTTCGGTACGGGATGTGGAGCATTAGGGGCATTAGTTGTTGTGATTGTGTGGACTGTGTTAGGGAGTAGAAGGCCAGTGGCACCAGAGGATCATCCTGCAGTAATGGAACTTCATAAGAAGGAATTCGACGAGTATAAAAAGTTCATAGTAGTTGTAGATAAAGCTATGGAAGATGGTAAGGTTAAGAATTAGGTAAAACTTGATTGAAGTGGGAATTTAGTTTTGTTGGTTATGTAAAAATCATCTTTGTTAAGTTTTGTGCTTTTTGTTCTTGTTATGTTGTGTAGCTGTAATTTAATGATTTACTATTCAAAGTGTACTAATTGCTCAGTATGGTCATTAAAATACAGCTTCAGATTGGTAGACACAAGT</gDNA_template>
            <first_frame> K  E  *  N  L  I  Q  F  S  Q  P  S  K  P  N  P  P  L  P  I  T  P  H  P  P  H  H  S  P  T  S  V  T  H  F  P  K  Q  F  P  S  T  P  F  S  I  L  I  T  N  P  R  N  S  L  R  *  N  T  S  K  S  Y  K  N  L  I  F  L  E  I  L  Y  M  G  S  F  K  K  K  S  *  *  V  P  V  E  K  R  V  Q  S  L  Q  L  S  I  A  K  V  E  P  R  S  R  M  G  T  L  S  A  S  R  Y  L  M  V  L  F  I  F  C  F  Y  F  R  T  I  Q  S  E  E  K  M  S  F  G  F  G  D  F  G  K  D  S  N  F  E  S  Q  I  A  L  Y  G  D  A  K  V  V  N  G  G  I  Q  M  S  G  S  M  G  F  S  A  G  R  I  L  N  K  K  P  F  K  L  I  D  G  N  P  R  K  M  V  S  F  S  L  H  F  V  F  S  L  S  R  E  N  G  D  G  F  A  F  V  M  V  P  I  G  Y  P  F  D  V  F  D  G  G  S  F  G  L  L  G  N  R  K  M  K  F  L  A  V  E  F  D  T  F  M  D  E  K  Y  G  D  V  N  D  N  H  V  G  V  D  L  S  S  F  I  S  V  K  V  S  N  V  S  S  V  K  L  G  L  M  N  S  G  E  K  M  Q  S  W  I  D  Y  E  A  S  S  K  R  L  E  I  R  L  S  K  L  G  D  I  K  P  V  D  T  L  L  S  C  P  I  D  M  S  Q  M  W  K  E  D  E  L  F  V  G  L  S  S  S  S  G  N  S  T  Q  K  C  N  I  Y  S  L  S  F  N  T  R  T  A  P  H  W  M  H  S  E  P  L  D  P  Q  A  F  V  E  K  K  E  E  M  K  V  H  S  R  S  D  C  A  L  R  I  L  G  A  L  L  F  G  T  G  C  G  A  L  G  A  L  V  V  V  I  V  W  T  V  L  G  S  R  R  P  V  A  P  E  D  H  P  A  V  M  E  L  H  K  K  E  F  D  E  Y  K  K  F  I  V  V  V  D  K  A  M  E  D  G  K  V  K  N  *  V  K  L  D  *  S  G  N  L  V  L  L  V  M  *  K  S  S  L  L  S  F  V  L  F  V  L  V  M  L  C  S  C  N  L  M  I  Y  Y  S  K  C  T  N  C  S  V  W  S  L  K  Y  S  F  R  L  V  D  T  S </first_frame>
            <second_frame>  K  S  K  I  L  F  N  F  H  N  L  Q  S  Q  I  H  H  S  P  S  P  P  T  P  P  I  T  H  Q  P  L  L  P  I  S  P  S  N  S  P  L  L  L  S  Q  Y  S  S  Q  T  L  E  I  L  *  D  K  I  P  Q  N  H  I  K  I  *  S  F  L  K  F  Y  T  W  V  H  L  R  R  N  L  D  K  S  Q  L  K  K  E  Y  K  V  Y  S  F  L  *  L  K  L  S  Q  D  Q  E  W  V  L  C  Q  L  P  G  I  L  W  C  C  L  S  S  V  F  T  S  E  L  S  N  L  R  R  K  C  H  L  V  L  E  I  L  V  K  I  Q  T  L  S  L  R  L  H  F  M  V  M  L  R  L  L  M  V  V  Y  K  *  V  V  Q  W  V  L  V  L  E  E  S  *  T  R  N  P  L  S  *  L  M  E  I  Q  E  K  W  C  L  F  H  C  I  L  C  F  H  C  Q  E  K  M  G  M  D  L  L  L  *  W  Y  L  L  D  I  L  L  M  C  L  M  V  A  H  L  G  Y  W  V  I  E  K  *  S  F  L  L  *  N  L  I  H  L  W  M  R  N  M  V  M  *  M  I  T  M  L  V  L  I  *  A  A  L  Y  L  *  K  *  V  M  L  V  L  L  N  W  G  *  *  I  V  V  K  R  C  N  L  G  L  I  M  K  Q  V  Q  R  D  *  K  S  G  *  A  N  *  V  T  *  S  Q  L  I  H  Y  F  L  A  L  L  I  C  H  K  C  G  K  R  M  N  C  L  W  G  *  V  L  Q  V  G  I  P  L  R  N  A  I  S  I  H  *  A  L  T  Q  G  L  H  L  I  G  C  T  Q  N  H  *  I  H  K  H  L  L  R  K  K  K  R  *  K  F  I  A  E  V  I  V  L  *  G  F  L  V  H  C  F  S  V  R  D  V  E  H  *  G  H  *  L  L  *  L  C  G  L  C  *  G  V  E  G  Q  W  H  Q  R  I  I  L  Q  *  W  N  F  I  R  R  N  S  T  S  I  K  S  S  *  *  L  *  I  K  L  W  K  M  V  R  L  R  I  R  *  N  L  I  E  V  G  I  *  F  C  W  L  C  K  N  H  L  C  *  V  L  C  F  L  F  L  L  C  C  V  A  V  I  *  *  F  T  I  Q  S  V  L  I  A  Q  Y  G  H  *  N  T  A  S  D  W  *  T  Q   </second_frame>
            <third_frame>   R  V  K  S  Y  S  I  F  T  T  F  K  A  K  S  T  T  P  H  H  P  P  P  P  P  S  L  T  N  L  C  Y  P  F  P  Q  A  I  P  L  Y  S  F  L  N  T  H  H  K  P  *  K  F  F  E  I  K  Y  L  K  I  I  *  K  F  N  L  S  *  N  S  I  H  G  F  I  *  E  E  I  L  I  S  P  S  *  K  K  S  T  K  F  T  A  F  Y  S  *  S  *  A  K  I  K  N  G  Y  F  V  S  F  Q  V  S  Y  G  V  V  Y  L  L  F  L  L  Q  N  Y  P  I  *  G  E  N  V  I  W  F  W  R  F  W  *  R  F  K  L  *  V  S  D  C  T  L  W  *  C  *  G  C  *  W  W  Y  T  N  E  W  F  N  G  F  *  C  W  K  N  L  E  Q  E  T  L  *  A  N  *  W  K  S  K  K  N  G  V  F  F  I  A  F  C  V  F  I  V  K  R  K  W  G  W  I  C  F  C  D  G  T  Y  W  I  S  F  *  C  V  *  W  W  L  I  W  A  I  G  *  *  K  N  E  V  S  C  C  R  I  *  Y  I  Y  G  *  E  I  W  *  C  E  *  *  P  C  W  C  *  F  K  Q  L  Y  I  C  E  S  E  *  C  *  F  C  *  I  G  A  N  E  *  W  *  K  D  A  I  L  D  *  L  *  S  K  F  K  E  I  R  N  Q  V  E  Q  I  R  *  H  K  A  S  *  Y  I  T  F  L  P  Y  *  Y  V  T  N  V  E  R  G  *  I  V  C  G  V  K  F  F  K  W  E  F  H  S  E  M  Q  Y  L  F  I  E  L  *  H  K  D  C  T  S  L  D  A  L  R  T  I  R  S  T  S  I  C  *  E  K  R  R  D  E  S  S  *  Q  K  *  L  C  F  E  D  S  W  C  I  A  F  R  Y  G  M  W  S  I  R  G  I  S  C  C  D  C  V  D  C  V  R  E  *  K  A  S  G  T  R  G  S  S  C  S  N  G  T  S  *  E  G  I  R  R  V  *  K  V  H  S  S  C  R  *  S  Y  G  R  W  *  G  *  E  L  G  K  T  *  L  K  W  E  F  S  F  V  G  Y  V  K  I  I  F  V  K  F  C  A  F  C  S  C  Y  V  V  *  L  *  F  N  D  L  L  F  K  V  Y  *  L  L  S  M  V  I  K  I  Q  L  Q  I  G  R  H  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78612" stop="77467"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1143</number_coding_nucleotides>
                  <number_encoded_amino_acids>381</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPVEKRVQSLQLSIAKVEPRSRMGTLSASRYLMVLFIFCFYFRTIQSEEKMSFGFGDFGKDSNFESQIALYGDAKVVNGGIQMSGSMGFSAGRILNKKPFKLIDGNPRKMVSFSLHFVFSLSRENGDGFAFVMVPIGYPFDVFDGGSFGLLGNRKMKFLAVEFDTFMDEKYGDVNDNHVGVDLSSFISVKVSNVSSVKLGLMNSGEKMQSWIDYEASSKRLEIRLSKLGDIKPVDTLLSCPIDMSQMWKEDELFVGLSSSSGNSTQKCNIYSLSFNTRTAPHWMHSEPLDPQAFVEKKEEMKVHSRSDCALRILGALLFGTGCGALGALVVVIVWTVLGSRRPVAPEDHPAVMELHKKEFDEYKKFIVVVDKAMEDGKVKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="95953" PGL_stop="89868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95953" e_stop="95678"/>
            <exon e_start="94477" e_stop="94299"/>
            <exon e_start="93506" e_stop="93152"/>
            <exon e_start="92779" e_stop="92663"/>
            <exon e_start="90269" e_stop="89868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.986"/>
          <exon-intron don_prob="0.972" acc_prob="0.649" e_score="0.983"/>
          <exon-intron don_prob="0.198" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.970" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.884"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="95953" e_stop="95678" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="95677" i_stop="94478" i_length="1200"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="94477" e_stop="94299" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.649">
            <gDNA_intron_boundary i_start="94298" i_stop="93507" i_length="792"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="93506" e_stop="93152" e_length="355"/>
          </exon>
          <intron i_serial="3" don_prob="0.198" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93151" i_stop="92780" i_length="372"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92779" e_stop="92663" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.987">
            <gDNA_intron_boundary i_start="92662" i_stop="90270" i_length="2393"/>
          </intron>
          <exon e_serial="5" e_score="0.884">
            <gDNA_exon_boundary e_start="90269" e_stop="89868" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95953" stop="95678"/>
              <exon start="94477" stop="94299"/>
              <exon start="93506" stop="93152"/>
              <exon start="92779" stop="92663"/>
              <exon start="90269" stop="89882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90153" stop="89868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323403" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAGAATTTGCTAACAGCTAAAGAGAGAAGGCAAATGAGAAATGAGAGAAGAGAGAGTAAAACAGGTTACAATTGGAGAGAAGAAGTAGAGGAAAAGCTTATTAAGAAACCTAAGAAGCAATACAAGTCCTGGACTGAAGAGCTTAATCTTGATAACCTTGCTAAATTGGGTCCTCAATGGTGGGTTGTTAGAGTTTCTAGAGTTAATGGTCATGAAACTGCTGAACGGATGGCTCGTGCTCTTGCTAGGAACTTTCCTGATATTGATTTTCAG : GTATACATTCCATCCGTACAAGTCAAAAGGAAATTAAAAAATGGAACACTTTCAATTAAGCCAAAACCCCTTTTCCCAGGATGTGTGTTTCTGAGATGTGTACTGAACAAGGAAATACATGATTTCATTCGAGAATGTACTGGAATTGGAGGCTTTGTTGGATCCAAGGTTGGAAATAC : AAAACGGCAGATCAACAAACCCAGACCTGTTGATGAGGATGACCTGGAGGCCATATTCAAACAAGCGAAGGAAGAGCAAGAGAAAGCTGATCAAGCTTTTGAAGAAGAGGAACAAGGAGAAGGAGGTTTAGATTCCAAGCTGACAAAAAACTCTAGTATAGCTACCCTTGACGACAAAGCTGTGCCCAAAAAACGAGGAAGGCAATCTAAAAAAGCTTCAGACCTGCTTGCAGTTGATGCGTTGAGAGGATCAGATGATAAATCTTTAATACCAGGGTCAACTATTGAAGTTGTGTCCGGAGCCTTTGCTGGATTTTCAGGGATTCTCAAGAAGGTTGATAGCAAGGCAGGATTG : GCAACTGTTGGATTTTCTCTGTTTGGCAAGGAGACTCTAGCTGATATAGATGTCAAAGAAATTGTAGCAGAGGTTGGCTGACCTGTTTAGGCTGTGGATACTTTTTTGTCTGAGATG : GGACAAGCAAAATCTTATGATGAGTCAACAGTAGGCAGCAGGATATTAGGGCAAAGGTCTGCAAGTGATTAAAGCTAAGGCATGTTTTAAGCTAATTTGCCTAGGGGATTTTATTCCACAGTTAACTTGGGTATCGAACTGCTGCAATTTTGATGGAGTATACTGTTGCTGAAGAATGAACATTCGGGTGCAGATCAAATGTCTGTAAAGCTACTTGAAGTTATATGCATGAATGTGTCAAATAAAAGAGGATGCAGCTCTCATAAATGGAAGTTGTCTTGTATTATTTTTCCTTGTGGATGAACATACTCGTGTTTTTTTCTCTTTGTAGGCTGTATTCGAAGCCTGTCAATCTGTTATGAAATTAGTTGCAAGTTCTTGGAGTTTAATCTATCATCCTAA</gDNA_template>
            <first_frame> E  E  N  L  L  T  A  K  E  R  R  Q  M  R  N  E  R  R  E  S  K  T  G  Y  N  W  R  E  E  V  E  E  K  L  I  K  K  P  K  K  Q  Y  K  S  W  T  E  E  L  N  L  D  N  L  A  K  L  G  P  Q  W  W  V  V  R  V  S  R  V  N  G  H  E  T  A  E  R  M  A  R  A  L  A  R  N  F  P  D  I  D  F  Q  :  V  Y  I  P  S  V  Q  V  K  R  K  L  K  N  G  T  L  S  I  K  P  K  P  L  F  P  G  C  V  F  L  R  C  V  L  N  K  E  I  H  D  F  I  R  E  C  T  G  I  G  G  F  V  G  S  K  V  G  N  T :   K  R  Q  I  N  K  P  R  P  V  D  E  D  D  L  E  A  I  F  K  Q  A  K  E  E  Q  E  K  A  D  Q  A  F  E  E  E  E  Q  G  E  G  G  L  D  S  K  L  T  K  N  S  S  I  A  T  L  D  D  K  A  V  P  K  K  R  G  R  Q  S  K  K  A  S  D  L  L  A  V  D  A  L  R  G  S  D  D  K  S  L  I  P  G  S  T  I  E  V  V  S  G  A  F  A  G  F  S  G  I  L  K  K  V  D  S  K  A  G  L  :  A  T  V  G  F  S  L  F  G  K  E  T  L  A  D  I  D  V  K  E  I  V  A  E  V  G  *  P  V  *  A  V  D  T  F  L  S  E  M  :  G  Q  A  K  S  Y  D  E  S  T  V  G  S  R  I  L  G  Q  R  S  A  S  D  *  S  *  G  M  F  *  A  N  L  P  R  G  F  Y  S  T  V  N  L  G  I  E  L  L  Q  F  *  W  S  I  L  L  L  K  N  E  H  S  G  A  D  Q  M  S  V  K  L  L  E  V  I  C  M  N  V  S  N  K  R  G  C  S  S  H  K  W  K  L  S  C  I  I  F  P  C  G  *  T  Y  S  C  F  F  L  F  V  G  C  I  R  S  L  S  I  C  Y  E  I  S  C  K  F  L  E  F  N  L  S  S  * </first_frame>
            <second_frame>  K  R  I  C  *  Q  L  K  R  E  G  K  *  E  M  R  E  E  R  V  K  Q  V  T  I  G  E  K  K  *  R  K  S  L  L  R  N  L  R  S  N  T  S  P  G  L  K  S  L  I  L  I  T  L  L  N  W  V  L  N  G  G  L  L  E  F  L  E  L  M  V  M  K  L  L  N  G  W  L  V  L  L  L  G  T  F  L  I  L  I  F  R :   Y  T  F  H  P  Y  K  S  K  G  N  *  K  M  E  H  F  Q  L  S  Q  N  P  F  S  Q  D  V  C  F  *  D  V  Y  *  T  R  K  Y  M  I  S  F  E  N  V  L  E  L  E  A  L  L  D  P  R  L  E  I   : Q  N  G  R  S  T  N  P  D  L  L  M  R  M  T  W  R  P  Y  S  N  K  R  R  K  S  K  R  K  L  I  K  L  L  K  K  R  N  K  E  K  E  V  *  I  P  S  *  Q  K  T  L  V  *  L  P  L  T  T  K  L  C  P  K  N  E  E  G  N  L  K  K  L  Q  T  C  L  Q  L  M  R  *  E  D  Q  M  I  N  L  *  Y  Q  G  Q  L  L  K  L  C  P  E  P  L  L  D  F  Q  G  F  S  R  R  L  I  A  R  Q  D  W :   Q  L  L  D  F  L  C  L  A  R  R  L  *  L  I  *  M  S  K  K  L  *  Q  R  L  A  D  L  F  R  L  W  I  L  F  C  L  R  W :   D  K  Q  N  L  M  M  S  Q  Q  *  A  A  G  Y  *  G  K  G  L  Q  V  I  K  A  K  A  C  F  K  L  I  C  L  G  D  F  I  P  Q  L  T  W  V  S  N  C  C  N  F  D  G  V  Y  C  C  *  R  M  N  I  R  V  Q  I  K  C  L  *  S  Y  L  K  L  Y  A  *  M  C  Q  I  K  E  D  A  A  L  I  N  G  S  C  L  V  L  F  F  L  V  D  E  H  T  R  V  F  F  S  L  *  A  V  F  E  A  C  Q  S  V  M  K  L  V  A  S  S  W  S  L  I  Y  H  P   </second_frame>
            <third_frame>   R  E  F  A  N  S  *  R  E  K  A  N  E  K  *  E  K  R  E  *  N  R  L  Q  L  E  R  R  S  R  G  K  A  Y  *  E  T  *  E  A  I  Q  V  L  D  *  R  A  *  S  *  *  P  C  *  I  G  S  S  M  V  G  C  *  S  F  *  S  *  W  S  *  N  C  *  T  D  G  S  C  S  C  *  E  L  S  *  Y  *  F  S   : G  I  H  S  I  R  T  S  Q  K  E  I  K  K  W  N  T  F  N  *  A  K  T  P  F  P  R  M  C  V  S  E  M  C  T  E  Q  G  N  T  *  F  H  S  R  M  Y  W  N  W  R  L  C  W  I  Q  G  W  K  Y  :  K  T  A  D  Q  Q  T  Q  T  C  *  *  G  *  P  G  G  H  I  Q  T  S  E  G  R  A  R  E  S  *  S  S  F  *  R  R  G  T  R  R  R  R  F  R  F  Q  A  D  K  K  L  *  Y  S  Y  P  *  R  Q  S  C  A  Q  K  T  R  K  A  I  *  K  S  F  R  P  A  C  S  *  C  V  E  R  I  R  *  *  I  F  N  T  R  V  N  Y  *  S  C  V  R  S  L  C  W  I  F  R  D  S  Q  E  G  *  *  Q  G  R  I   : G  N  C  W  I  F  S  V  W  Q  G  D  S  S  *  Y  R  C  Q  R  N  C  S  R  G  W  L  T  C  L  G  C  G  Y  F  F  V  *  D   : G  T  S  K  I  L  *  *  V  N  S  R  Q  Q  D  I  R  A  K  V  C  K  *  L  K  L  R  H  V  L  S  *  F  A  *  G  I  L  F  H  S  *  L  G  Y  R  T  A  A  I  L  M  E  Y  T  V  A  E  E  *  T  F  G  C  R  S  N  V  C  K  A  T  *  S  Y  M  H  E  C  V  K  *  K  R  M  Q  L  S  *  M  E  V  V  L  Y  Y  F  S  L  W  M  N  I  L  V  F  F  S  L  C  R  L  Y  S  K  P  V  N  L  L  *  N  *  L  Q  V  L  G  V  *  S  I  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95953" stop="95678"/>
                    <exon start="94477" stop="94299"/>
                    <exon start="93506" stop="93152"/>
                    <exon start="92779" stop="92699"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EENLLTAKERRQMRNERRESKTGYNWREEVEEKLIKKPKKQYKSWTEELNLDNLAKLGPQWWVVRVSRVNGHETAERMARALARNFPDIDFQVYIPSVQVKRKLKNGTLSIKPKPLFPGCVFLRCVLNKEIHDFIRECTGIGGFVGSKVGNTKRQINKPRPVDEDDLEAIFKQAKEEQEKADQAFEEEEQGEGGLDSKLTKNSSIATLDDKAVPKKRGRQSKKASDLLAVDALRGSDDKSLIPGSTIEVVSGAFAGFSGILKKVDSKAGLATVGFSLFGKETLADIDVKEIVAEVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="105360" PGL_stop="105773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105360" e_stop="105375"/>
            <exon e_start="105461" e_stop="105773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.930" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105360" e_stop="105375" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.930">
            <gDNA_intron_boundary i_start="105376" i_stop="105460" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="105461" e_stop="105773" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105360" stop="105375"/>
              <exon start="105461" stop="105773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTTTAAGCCCAG : TTAAAAATATCAGAAGCTTGAAGGATTAGAAGATCTTTGTGCAAGAAATCGATGAATACTTACACCGATGACTATGACAGTTGACTGAATTCATCAAATTTAGTTTTACATAGTAACTGTCCATTCATTAGCAAAAAAGTGCAAGTGCACTGGATTAGGATTTATTTCCATAGGATTAACAGCTGCAGGCCTAGCCAGTATATTGATTATATATAGCTTATGTCTAAGCATATTAGGGGAATTTGATAAATATATTTGACATGACCAAGCTTATAGCAAATTTGATTATGAGAAATATCTGATTATTGTTATG</gDNA_template>
            <first_frame> Q  I  L  S  P   : V  K  N  I  R  S  L  K  D  *  K  I  F  V  Q  E  I  D  E  Y  L  H  R  *  L  *  Q  L  T  E  F  I  K  F  S  F  T  *  *  L  S  I  H  *  Q  K  S  A  S  A  L  D  *  D  L  F  P  *  D  *  Q  L  Q  A  *  P  V  Y  *  L  Y  I  A  Y  V  *  A  Y  *  G  N  L  I  N  I  F  D  M  T  K  L  I  A  N  L  I  M  R  N  I  *  L  L  L   </first_frame>
            <second_frame>  K  F  *  A  Q  :  L  K  I  S  E  A  *  R  I  R  R  S  L  C  K  K  S  M  N  T  Y  T  D  D  Y  D  S  *  L  N  S  S  N  L  V  L  H  S  N  C  P  F  I  S  K  K  V  Q  V  H  W  I  R  I  Y  F  H  R  I  N  S  C  R  P  S  Q  Y  I  D  Y  I  *  L  M  S  K  H  I  R  G  I  *  *  I  Y  L  T  *  P  S  L  *  Q  I  *  L  *  E  I  S  D  Y  C  Y  </second_frame>
            <third_frame>   N  F  K  P  S :   *  K  Y  Q  K  L  E  G  L  E  D  L  C  A  R  N  R  *  I  L  T  P  M  T  M  T  V  D  *  I  H  Q  I  *  F  Y  I  V  T  V  H  S  L  A  K  K  C  K  C  T  G  L  G  F  I  S  I  G  L  T  A  A  G  L  A  S  I  L  I  I  Y  S  L  C  L  S  I  L  G  E  F  D  K  Y  I  *  H  D  Q  A  Y  S  K  F  D  Y  E  K  Y  L  I  I  V  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026P14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="108702" PGL_stop="106138"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108702" e_stop="108242"/>
            <exon e_start="107505" e_stop="107281"/>
            <exon e_start="106986" e_stop="106480"/>
            <exon e_start="106382" e_stop="106138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108702" e_stop="108242" e_length="461"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107505" e_stop="107281" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.885" acc_prob="0.990">
            <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106986" e_stop="106480" e_length="507"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="106479" i_stop="106383" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="106382" e_stop="106138" e_length="245"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108702" stop="108242"/>
              <exon start="107505" stop="107281"/>
              <exon start="106986" stop="106480"/>
              <exon start="106382" stop="106138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACTTGTAAACTGAGAAATTTTAGTGATTTCAAGAATCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGACAAGAACAAGCTGGAGTTATTGATGCTGAACTTACCATAGTAATTTCAAGTATTTCAATGGCTTGTAAACAGATTGCTTCTTTGGTCCAAAGAGCTGGAATTTCTAACCTTACTGGAGTTCAAGGTGCTGTCAATATTCAAGGAGAAGATCAGAAGAAACTTGATGTTGTCTCTAATGAG : GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG : CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTACCAGCTCTGGGATGACAAGTTGAAAAAATATATCGATGACTTGAAAGACCCTGGTCCTAGTGGCAAGCCTTACTCTGCAAGGTACATTGGTAGTTTGGTAGGTGACTTCCATAGAACTCTTCTATATGGTGGCATTTATGGTTATCCTAGAGACAGAAAGAGCAAGAATGGAAAGTTGAGGCTTTTGTACGAATGTGCTCCCATGAGCTTCATTGTGGAACAAGCTGGTGGCAAAGGATCCGATGGTCACCAAAGAGTTCTCGATATCCAACCAACTGAG : ATACATCAACGAGTTCCATTGTACATTGGAAGCACAGAAGAAGTTGAAAAATTGGAGAAGTACTTGTCTTAATTCCAAAATCAAGACGAGACTGTGAATTTGTAATACTCGAAAGAAATTCTTTTCACAAGAAGTCTAGGAACCAATTGCTAAAGTCATTATGGTTCAAAGCTTTGCGGTGATTCAATTCATAAAACAATGTAAAGGTTTTTCCATATCTAAAATCTGTCATCCTCTTTCTTGAA</gDNA_template>
            <first_frame> E  L  V  N  *  E  I  L  V  I  S  R  I  L  R  K  S  Q  W  Q  Q  Q  Q  Q  L  H  I  *  V  L  *  T  K  R  L  H  F  Y  L  P  W  T  K  R  L  H  F  Y  A  Q  K  T  A  Q  R  E  G  H  L  M  E  E  L  S  A  W  Q  *  R  Q  L  Q  V  L  H  K  P  R  K  R  V  A  M  S  Y  K  L  *  Q  V  G  Y  *  D  K  N  K  L  E  L  L  M  L  N  L  P  *  *  F  Q  V  F  Q  W  L  V  N  R  L  L  L  W  S  K  E  L  E  F  L  T  L  L  E  F  K  V  L  S  I  F  K  E  K  I  R  R  N  L  M  L  S  L  M  R :   F  S  R  I  V  *  D  Q  V  E  G  L  G  L  *  H  Q  K  K  R  M  Y  L  W  Q  W  K  R  V  T  Q  A  T  T  L  W  C  L  I  L  L  M  D  H  Q  T  L  M  L  L  Y  L  P  V  L  S  L  E  Y  T  A  R  M  M  S  A  *  L  I  L  E  M  I  P  R :   L  T  I  *  S  K  S  A  S  *  M  Y  V  N  Q  G  Q  T  F  L  Q  Q  D  T  A  C  T  Q  A  L  *  F  S  Y  S  P  W  E  M  A  F  F  P  L  T  W  I  Q  C  M  E  N  L  F  *  L  K  K  M  S  K  Y  Q  S  L  E  R  S  I  H  S  M  K  E  T  T  S  S  G  M  T  S  *  K  N  I  S  M  T  *  K  T  L  V  L  V  A  S  L  T  L  Q  G  T  L  V  V  W  *  V  T  S  I  E  L  F  Y  M  V  A  F  M  V  I  L  E  T  E  R  A  R  M  E  S  *  G  F  C  T  N  V  L  P  *  A  S  L  W  N  K  L  V  A  K  D  P  M  V  T  K  E  F  S  I  S  N  Q  L  R :   Y  I  N  E  F  H  C  T  L  E  A  Q  K  K  L  K  N  W  R  S  T  C  L  N  S  K  I  K  T  R  L  *  I  C  N  T  R  K  K  F  F  S  Q  E  V  *  E  P  I  A  K  V  I  M  V  Q  S  F  A  V  I  Q  F  I  K  Q  C  K  G  F  S  I  S  K  I  C  H  P  L  S  *  </first_frame>
            <second_frame>  N  L  *  T  E  K  F  *  *  F  Q  E  S  *  E  N  H  N  G  S  N  S  N  N  F  I  F  K  C  S  R  Q  K  D  S  I  F  I  C  L  G  Q  K  D  S  I  F  M  P  K  K  Q  H  K  E  K  V  I  *  W  R  S  *  V  H  G  N  R  D  S  F  R  C  Y  T  N  Q  E  K  E  W  L  *  V  T  N  F  N  K  L  A  I  E  T  R  T  S  W  S  Y  *  C  *  T  Y  H  S  N  F  K  Y  F  N  G  L  *  T  D  C  F  F  G  P  K  S  W  N  F  *  P  Y  W  S  S  R  C  C  Q  Y  S  R  R  R  S  E  E  T  *  C  C  L  *  *   : G  F  L  E  L  S  K  I  K  W  K  D  W  D  Y  S  I  R  R  R  G  C  T  C  G  S  G  R  E  L  L  R  Q  L  H  C  G  V  *  S  S  *  W  I  I  K  H  *  C  C  C  I  Y  R  F  Y  L  W  N  I  Q  P  E  *  *  V  P  S  *  S  W  R  *  F  H   : A  *  Q  Y  R  A  K  V  H  R  E  C  M  S  T  R  D  K  P  S  C  S  R  I  L  H  V  L  K  L  C  D  F  R  T  H  L  G  K  W  R  F  F  L  *  L  G  S  N  V  W  R  I  C  S  D  S  R  K  C  P  N  T  K  V  W  K  D  L  F  I  Q  *  R  K  L  P  A  L  G  *  Q  V  E  K  I  Y  R  *  L  E  R  P  W  S  *  W  Q  A  L  L  C  K  V  H  W  *  F  G  R  *  L  P  *  N  S  S  I  W  W  H  L  W  L  S  *  R  Q  K  E  Q  E  W  K  V  E  A  F  V  R  M  C  S  H  E  L  H  C  G  T  S  W  W  Q  R  I  R  W  S  P  K  S  S  R  Y  P  T  N  *   : D  T  S  T  S  S  I  V  H  W  K  H  R  R  S  *  K  I  G  E  V  L  V  L  I  P  K  S  R  R  D  C  E  F  V  I  L  E  R  N  S  F  H  K  K  S  R  N  Q  L  L  K  S  L  W  F  K  A  L  R  *  F  N  S  *  N  N  V  K  V  F  P  Y  L  K  S  V  I  L  F  L  E </second_frame>
            <third_frame>   T  C  K  L  R  N  F  S  D  F  K  N  P  K  K  I  T  M  A  A  T  A  T  T  S  Y  L  S  A  L  D  K  K  T  P  F  L  F  A  L  D  K  K  T  P  F  L  C  P  K  N  S  T  K  R  R  S  F  N  G  G  V  K  C  M  A  I  E  T  A  S  G  V  T  Q  T  K  K  K  S  G  Y  E  L  Q  T  L  T  S  W  L  L  R  Q  E  Q  A  G  V  I  D  A  E  L  T  I  V  I  S  S  I  S  M  A  C  K  Q  I  A  S  L  V  Q  R  A  G  I  S  N  L  T  G  V  Q  G  A  V  N  I  Q  G  E  D  Q  K  K  L  D  V  V  S  N  E  :  V  F  S  N  C  L  R  S  S  G  R  T  G  I  I  A  S  E  E  E  D  V  P  V  A  V  E  E  S  Y  S  G  N  Y  I  V  V  F  D  P  L  D  G  S  S  N  I  D  A  A  V  S  T  G  S  I  F  G  I  Y  S  P  N  D  E  C  L  A  D  L  G  D  D  S  T  :  L  D  N  I  E  Q  K  C  I  V  N  V  C  Q  P  G  T  N  L  L  A  A  G  Y  C  M  Y  S  S  S  V  I  F  V  L  T  L  G  N  G  V  F  S  F  N  L  D  P  M  Y  G  E  F  V  L  T  Q  E  N  V  Q  I  P  K  S  G  K  I  Y  S  F  N  E  G  N  Y  Q  L  W  D  D  K  L  K  K  Y  I  D  D  L  K  D  P  G  P  S  G  K  P  Y  S  A  R  Y  I  G  S  L  V  G  D  F  H  R  T  L  L  Y  G  G  I  Y  G  Y  P  R  D  R  K  S  K  N  G  K  L  R  L  L  Y  E  C  A  P  M  S  F  I  V  E  Q  A  G  G  K  G  S  D  G  H  Q  R  V  L  D  I  Q  P  T  E  :  I  H  Q  R  V  P  L  Y  I  G  S  T  E  E  V  E  K  L  E  K  Y  L  S  *  F  Q  N  Q  D  E  T  V  N  L  *  Y  S  K  E  I  L  F  T  R  S  L  G  T  N  C  *  S  H  Y  G  S  K  L  C  G  D  S  I  H  K  T  M  *  R  F  F  H  I  *  N  L  S  S  S  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108700" stop="108242"/>
                    <exon start="107505" stop="107281"/>
                    <exon start="106986" stop="106480"/>
                    <exon start="106382" stop="106311"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCKLRNFSDFKNPKKITMAATATTSYLSALDKKTPFLFALDKKTPFLCPKNSTKRRSFNGGVKCMAIETASGVTQTKKKSGYELQTLTSWLLRQEQAGVIDAELTIVISSISMACKQIASLVQRAGISNLTGVQGAVNIQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADLGDDSTLDNIEQKCIVNVCQPGTNLLAAGYCMYSSSVIFVLTLGNGVFSFNLDPMYGEFVLTQENVQIPKSGKIYSFNEGNYQLWDDKLKKYIDDLKDPGPSGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDRKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKLEKYLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108665" e_stop="108421"/>
            <exon e_start="108268" e_stop="108242"/>
            <exon e_start="107505" e_stop="107281"/>
            <exon e_start="106986" e_stop="106760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108665" e_stop="108421" e_length="245"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108420" i_stop="108269" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108268" e_stop="108242" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="108241" i_stop="107506" i_length="736"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107505" e_stop="107281" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.885" acc_prob="0.990">
            <gDNA_intron_boundary i_start="107280" i_stop="106987" i_length="294"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="106986" e_stop="106760" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108665" stop="108421"/>
              <exon start="108268" stop="108242"/>
              <exon start="107505" stop="107281"/>
              <exon start="106986" stop="106760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTAAGAAAATCACAATGGCAGCAACAGCAACAACTTCATATTTAAGTGCTCTAGACAAAAAGACTCCATTTTTATTTGCCTTGGACAAAAAGACTCCATTTTTATGCCCAAAAAACAGCACAAAGAGAAGGTCATTTAATGGAGGAGTTAAGTGCATGGCAATAGAGACAGCTTCAGGTGTTACACAAACCAAGAAAAAGAGTGGCTATGAGTTACAAACTTTAACAAGTTGGCTATTGAGAC : AAGAAACTTGATGTTGTCTCTAATGAG : GTTTTCTCGAATTGTCTAAGATCAAGTGGAAGGACTGGGATTATAGCATCAGAAGAAGAGGATGTACCTGTGGCAGTGGAAGAGAGTTACTCAGGCAACTACATTGTGGTGTTTGATCCTCTTGATGGATCATCAAACATTGATGCTGCTGTATCTACCGGTTCTATCTTTGGAATATACAGCCCGAATGATGAGTGCCTAGCTGATCTTGGAGATGATTCCACG : CTTGACAATATAGAGCAAAAGTGCATCGTGAATGTATGTCAACCAGGGACAAACCTTCTTGCAGCAGGATACTGCATGTACTCAAGCTCTGTGATTTTCGTACTCACCTTGGGAAATGGCGTTTTTTCCTTTAACTTGGATCCAATGTATGGAGAATTTGTTCTGACTCAAGAAAATGTCCAAATACCAAAGTCTGGAAAGATCTATTCATTCAATGAAGGAAACTA</gDNA_template>
            <first_frame> S  *  E  N  H  N  G  S  N  S  N  N  F  I  F  K  C  S  R  Q  K  D  S  I  F  I  C  L  G  Q  K  D  S  I  F  M  P  K  K  Q  H  K  E  K  V  I  *  W  R  S  *  V  H  G  N  R  D  S  F  R  C  Y  T  N  Q  E  K  E  W  L  *  V  T  N  F  N  K  L  A  I  E  T :   R  N  L  M  L  S  L  M  R :   F  S  R  I  V  *  D  Q  V  E  G  L  G  L  *  H  Q  K  K  R  M  Y  L  W  Q  W  K  R  V  T  Q  A  T  T  L  W  C  L  I  L  L  M  D  H  Q  T  L  M  L  L  Y  L  P  V  L  S  L  E  Y  T  A  R  M  M  S  A  *  L  I  L  E  M  I  P  R :   L  T  I  *  S  K  S  A  S  *  M  Y  V  N  Q  G  Q  T  F  L  Q  Q  D  T  A  C  T  Q  A  L  *  F  S  Y  S  P  W  E  M  A  F  F  P  L  T  W  I  Q  C  M  E  N  L  F  *  L  K  K  M  S  K  Y  Q  S  L  E  R  S  I  H  S  M  K  E  T  </first_frame>
            <second_frame>  P  K  K  I  T  M  A  A  T  A  T  T  S  Y  L  S  A  L  D  K  K  T  P  F  L  F  A  L  D  K  K  T  P  F  L  C  P  K  N  S  T  K  R  R  S  F  N  G  G  V  K  C  M  A  I  E  T  A  S  G  V  T  Q  T  K  K  K  S  G  Y  E  L  Q  T  L  T  S  W  L  L  R   : Q  E  T  *  C  C  L  *  *   : G  F  L  E  L  S  K  I  K  W  K  D  W  D  Y  S  I  R  R  R  G  C  T  C  G  S  G  R  E  L  L  R  Q  L  H  C  G  V  *  S  S  *  W  I  I  K  H  *  C  C  C  I  Y  R  F  Y  L  W  N  I  Q  P  E  *  *  V  P  S  *  S  W  R  *  F  H   : A  *  Q  Y  R  A  K  V  H  R  E  C  M  S  T  R  D  K  P  S  C  S  R  I  L  H  V  L  K  L  C  D  F  R  T  H  L  G  K  W  R  F  F  L  *  L  G  S  N  V  W  R  I  C  S  D  S  R  K  C  P  N  T  K  V  W  K  D  L  F  I  Q  *  R  K  L </second_frame>
            <third_frame>   L  R  K  S  Q  W  Q  Q  Q  Q  Q  L  H  I  *  V  L  *  T  K  R  L  H  F  Y  L  P  W  T  K  R  L  H  F  Y  A  Q  K  T  A  Q  R  E  G  H  L  M  E  E  L  S  A  W  Q  *  R  Q  L  Q  V  L  H  K  P  R  K  R  V  A  M  S  Y  K  L  *  Q  V  G  Y  *  D  :  K  K  L  D  V  V  S  N  E  :  V  F  S  N  C  L  R  S  S  G  R  T  G  I  I  A  S  E  E  E  D  V  P  V  A  V  E  E  S  Y  S  G  N  Y  I  V  V  F  D  P  L  D  G  S  S  N  I  D  A  A  V  S  T  G  S  I  F  G  I  Y  S  P  N  D  E  C  L  A  D  L  G  D  D  S  T  :  L  D  N  I  E  Q  K  C  I  V  N  V  C  Q  P  G  T  N  L  L  A  A  G  Y  C  M  Y  S  S  S  V  I  F  V  L  T  L  G  N  G  V  F  S  F  N  L  D  P  M  Y  G  E  F  V  L  T  Q  E  N  V  Q  I  P  K  S  G  K  I  Y  S  F  N  E  G  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108423" stop="108421"/>
                    <exon start="108268" stop="108242"/>
                    <exon start="107505" stop="107281"/>
                    <exon start="106986" stop="106762"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLADLGDDSTLDNIEQKCIVNVCQPGTNLLAAGYCMYSSSVIFVLTLGNGVFSFNLDPMYGEFVLTQENVQIPKSGKIYSFNEGN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108664" stop="108421"/>
                    <exon start="108268" stop="108258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKKITMAATATTSYLSALDKKTPFLFALDKKTPFLCPKNSTKRRSFNGGVKCMAIETASGVTQTKKKSGYELQTLTSWLLRQET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="110982" PGL_stop="113502"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110982" e_stop="111103"/>
            <exon e_start="111579" e_stop="111914"/>
            <exon e_start="112121" e_stop="112409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.993" e_score="0.967"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.988"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="110982" e_stop="111103" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.993">
            <gDNA_intron_boundary i_start="111104" i_stop="111578" i_length="475"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="111579" e_stop="111914" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206"/>
          </intron>
          <exon e_serial="3" e_score="0.924">
            <gDNA_exon_boundary e_start="112121" e_stop="112409" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110982" stop="111103"/>
              <exon start="111579" stop="111914"/>
              <exon start="112121" stop="112409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATTTAAAAATTTACAACAAAATAAAAGAGAAAACAAATGGCCTCATCAATGAAATCATCTTTGATCCTTTTCTTGACATGTTCCCTTTTCCTTCAGGTCACTTATGCTGTGTATAAGA : CTGAGGTGAAATGTGAGAGTTTGCCAAATGGTGATTGTGCATTTGCAATTTCATCAACAGGAAAAAGGTGTGTATTAGAAAAAGCAAAAACACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAG : GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGAAT</gDNA_template>
            <first_frame> K  N  L  K  I  Y  N  K  I  K  E  K  T  N  G  L  I  N  E  I  I  F  D  P  F  L  D  M  F  P  F  P  S  G  H  L  C  C  V  *  D :   *  G  E  M  *  E  F  A  K  W  *  L  C  I  C  N  F  I  N  R  K  K  V  C  I  R  K  S  K  N  T  K  R  *  L  N  *  *  *  I  *  M  Q  D  I  R  S  Y  G  S  K  H  E  G  T  H  *  N  R  *  M  Y  *  I  L  W  S  *  *  K  F  L  W  N  F  I  *  *  F  A  *  A  S  I  C  L  Q  I  M  C  P  C  L  L  S  T  M  P  Q  Y  C  *  P  L  L  Q  L  G  C  C  *  R :   S  I  L  A  R  P  M  Q  Q  E  Q  *  V  E  E  *  W  C  C  *  R  W  C  *  C  S  C  S  I  S  F  F  I  L  N  I  F  A  P  F  *  I  K  I  Y  I  N  D  C  F  F  T  N  N  F  S  V  V  C  E  D  I  A  L  N  V  L  I  L  W  V  C  *  N  F  S  L  Y  *  F  F  C  H  *  E  F  N  K  D  S  S  S  F  T  W  N </first_frame>
            <second_frame>  K  I  *  K  F  T  T  K  *  K  R  K  Q  M  A  S  S  M  K  S  S  L  I  L  F  L  T  C  S  L  F  L  Q  V  T  Y  A  V  Y  K   : T  E  V  K  C  E  S  L  P  N  G  D  C  A  F  A  I  S  S  T  G  K  R  C  V  L  E  K  A  K  T  P  K  D  D  L  I  S  S  E  Y  E  C  K  T  S  E  V  M  V  Q  N  M  K  E  H  I  E  T  D  E  C  I  E  S  C  G  L  N  R  N  F  F  G  I  S  S  D  D  L  L  E  P  Q  F  V  S  K  L  C  A  P  A  C  Y  Q  Q  C  P  N  I  V  D  L  Y  F  N  L  A  V  A  E   : G  A  Y  L  P  D  L  C  N  K  N  N  K  L  K  S  S  G  A  A  E  D  G  V  D  A  P  A  P  S  P  S  S  F  *  I  F  L  H  L  F  K  *  K  Y  I  *  M  I  V  F  L  Q  T  I  L  V  L  F  V  K  I  L  H  L  M  F  *  F  F  G  F  A  E  I  F  P  C  T  N  S  F  V  T  E  N  L  I  K  I  L  L  L  L  H  G   </second_frame>
            <third_frame>   K  F  K  N  L  Q  Q  N  K  R  E  N  K  W  P  H  Q  *  N  H  L  *  S  F  S  *  H  V  P  F  S  F  R  S  L  M  L  C  I  R  :  L  R  *  N  V  R  V  C  Q  M  V  I  V  H  L  Q  F  H  Q  Q  E  K  G  V  Y  *  K  K  Q  K  H  Q  K  M  T  *  L  V  V  N  M  N  A  R  H  Q  K  L  W  F  K  T  *  R  N  T  L  K  Q  M  N  V  L  N  L  V  V  L  I  E  I  S  L  E  F  H  L  M  I  C  L  S  L  N  L  S  P  N  Y  V  P  L  L  V  I  N  N  A  P  I  L  L  T  S  T  S  T  W  L  L  L  K  :  E  H  T  C  Q  T  Y  A  T  R  T  I  S  *  R  V  V  V  L  L  K  M  V  L  M  L  L  L  H  L  L  L  H  S  K  Y  F  C  T  F  L  N  K  N  I  Y  K  *  L  F  F  Y  K  Q  F  *  C  C  L  *  R  Y  C  T  *  C  F  N  S  L  G  L  L  K  F  F  L  V  L  I  L  L  S  L  R  I  *  *  R  F  F  F  F  Y  M  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111010" stop="111103"/>
                    <exon start="111579" stop="111914"/>
                    <exon start="112121" stop="112224"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKQMASSMKSSLILFLTCSLFLQVTYAVYKTEVKCESLPNGDCAFAISSTGKRCVLEKAKTPKDDLISSEYECKTSEVMVQNMKEHIETDECIESCGLNRNFFGISSDDLLEPQFVSKLCAPACYQQCPNIVDLYFNLAVAEGAYLPDLCNKNNKLKSSGAAEDGVDAPAPSPSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111700" e_stop="111914"/>
            <exon e_start="112121" e_stop="112407"/>
            <exon e_start="113460" e_stop="113502"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="0.958"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.895"/>
          <exon-only e_score="0.651"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="111700" e_stop="111914" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111915" i_stop="112120" i_length="206"/>
          </intron>
          <exon e_serial="2" e_score="0.895">
            <gDNA_exon_boundary e_start="112121" e_stop="112407" e_length="287"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112408" i_stop="113459" i_length="1052"/>
          </intron>
          <exon e_serial="3" e_score="0.651">
            <gDNA_exon_boundary e_start="113460" e_stop="113502" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111700" stop="111914"/>
              <exon start="112121" stop="112407"/>
              <exon start="113460" stop="113502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313953" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCAATTTGTCTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTCTACTTCAACTTGGCTGTTGCTGAAG : GAGCATACTTGCCAGACCTATGCAACAAGAACAATAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCTTCATTCTAAATATTTTTGCACCTTTTTAAATAAAAATATATATAAATGATTGTTTTTTTACAAACAATTTTAGTGTTGTTTGTGAAGATATTGCACTTAATGTTTTAATTCTTTGGGTTTGCTGAAATTTTTCCTTGTACTAATTCTTTTGTCACTGAGAATTTAATAAAGATTCTTCTTCTTTTACATGGA : AAAAGAAAAGAAAAAAAAATAGTTACTACATAAAAAGAGATGA</gDNA_template>
            <first_frame> *  M  Q  D  I  R  S  Y  G  S  K  H  E  G  T  H  *  N  R  *  M  Y  *  I  L  W  S  *  *  K  F  L  W  N  F  I  *  *  F  A  *  A  S  I  C  L  Q  I  M  C  P  C  L  L  S  T  M  P  Q  Y  C  *  P  L  L  Q  L  G  C  C  *  R :   S  I  L  A  R  P  M  Q  Q  E  Q  *  V  E  E  *  W  C  C  *  R  W  C  *  C  S  C  S  I  S  F  F  I  L  N  I  F  A  P  F  *  I  K  I  Y  I  N  D  C  F  F  T  N  N  F  S  V  V  C  E  D  I  A  L  N  V  L  I  L  W  V  C  *  N  F  S  L  Y  *  F  F  C  H  *  E  F  N  K  D  S  S  S  F  T  W   : K  K  K  R  K  K  N  S  Y  Y  I  K  R  D   </first_frame>
            <second_frame>  E  C  K  T  S  E  V  M  V  Q  N  M  K  E  H  I  E  T  D  E  C  I  E  S  C  G  L  N  R  N  F  F  G  I  S  S  D  D  L  L  E  P  Q  F  V  S  K  L  C  A  P  A  C  Y  Q  Q  C  P  N  I  V  D  L  Y  F  N  L  A  V  A  E   : G  A  Y  L  P  D  L  C  N  K  N  N  K  L  K  S  S  G  A  A  E  D  G  V  D  A  P  A  P  S  P  S  S  F  *  I  F  L  H  L  F  K  *  K  Y  I  *  M  I  V  F  L  Q  T  I  L  V  L  F  V  K  I  L  H  L  M  F  *  F  F  G  F  A  E  I  F  P  C  T  N  S  F  V  T  E  N  L  I  K  I  L  L  L  L  H  G  :  K  R  K  E  K  K  I  V  T  T  *  K  E  M  </second_frame>
            <third_frame>   N  A  R  H  Q  K  L  W  F  K  T  *  R  N  T  L  K  Q  M  N  V  L  N  L  V  V  L  I  E  I  S  L  E  F  H  L  M  I  C  L  S  L  N  L  S  P  N  Y  V  P  L  L  V  I  N  N  A  P  I  L  L  T  S  T  S  T  W  L  L  L  K  :  E  H  T  C  Q  T  Y  A  T  R  T  I  S  *  R  V  V  V  L  L  K  M  V  L  M  L  L  L  H  L  L  L  H  S  K  Y  F  C  T  F  L  N  K  N  I  Y  K  *  L  F  F  Y  K  Q  F  *  C  C  L  *  R  Y  C  T  *  C  F  N  S  L  G  L  L  K  F  F  L  V  L  I  L  L  S  L  R  I  *  *  R  F  F  F  F  Y  M  E :   K  E  K  K  K  K  *  L  L  H  K  K  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111701" stop="111914"/>
                    <exon start="112121" stop="112224"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECKTSEVMVQNMKEHIETDECIESCGLNRNFFGISSDDLLEPQFVSKLCAPACYQQCPNIVDLYFNLAVAEGAYLPDLCNKNNKLKSSGAAEDGVDAPAPSPSSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="120687" PGL_stop="122025"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120687" e_stop="120851"/>
            <exon e_start="121345" e_stop="121680"/>
            <exon e_start="121885" e_stop="122025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.685" acc_prob="0.954" e_score="0.976"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.970"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="120687" e_stop="120851" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.685" acc_prob="0.954">
            <gDNA_intron_boundary i_start="120852" i_stop="121344" i_length="493"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="121345" e_stop="121680" e_length="336"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121681" i_stop="121884" i_length="204"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="121885" e_stop="122025" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120687" stop="120851"/>
              <exon start="121345" stop="121680"/>
              <exon start="121885" stop="122025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313956" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTTTCCAACAACAAAAAAAAAATATACAAAAAAATAATCAAATTCCCAACTAAACAAAAGAGAAAAACAAGAAAAATAAATGGGTTCATCAATGAAATCATCTTTGATCCTTTTTTTTACATGTTCCCTTTTCCTCCAAGTCGCTTATGCGGTATATAAAA : CTGAGGTAAAATGTGAGAGTTTACCAAATAGTGATTGTGCATTTGCAATTTCATCAACTGGAAAAAGGTGTGTATTAGAAAAAGCAAAAAAACCAAAAGATGACTTAATTAGTAGTGAATATGAATGCAAGACATCAGAAGTTATGGTTCAAAACATGAAGGAACACATTGAAACAGATGAATGTATTGAATCTTGTGGTCTTAATAGAAATTTCTTTGGAATTTCATCTGATGATTTGCTTGAGCCTCGATTTGTTTCCAAATTATGTGCCCCTGCTTGTTATCAACAATGCCCCAATATTGTTGACCTTTACTTCAACTTGGCTGCTGGTGAAG : GAGCATACTTGCCAGACATATGCAACAAGAACAAGAAGTTGAAGAGTAGTGGTGCTGCTGAAGATGGTGTTGATGCTCCTGCTCCATCTCCTTCATTTTTATAAAATTATTTTTACACCTTATTATAAAATAATATATATG</gDNA_template>
            <first_frame> S  F  F  Q  Q  Q  K  K  N  I  Q  K  N  N  Q  I  P  N  *  T  K  E  K  N  K  K  N  K  W  V  H  Q  *  N  H  L  *  S  F  F  L  H  V  P  F  S  S  K  S  L  M  R  Y  I  K  :  L  R  *  N  V  R  V  Y  Q  I  V  I  V  H  L  Q  F  H  Q  L  E  K  G  V  Y  *  K  K  Q  K  N  Q  K  M  T  *  L  V  V  N  M  N  A  R  H  Q  K  L  W  F  K  T  *  R  N  T  L  K  Q  M  N  V  L  N  L  V  V  L  I  E  I  S  L  E  F  H  L  M  I  C  L  S  L  D  L  F  P  N  Y  V  P  L  L  V  I  N  N  A  P  I  L  L  T  F  T  S  T  W  L  L  V  K  :  E  H  T  C  Q  T  Y  A  T  R  T  R  S  *  R  V  V  V  L  L  K  M  V  L  M  L  L  L  H  L  L  H  F  Y  K  I  I  F  T  P  Y  Y  K  I  I  Y  M </first_frame>
            <second_frame>  L  F  S  N  N  K  K  K  I  Y  K  K  I  I  K  F  P  T  K  Q  K  R  K  T  R  K  I  N  G  F  I  N  E  I  I  F  D  P  F  F  Y  M  F  P  F  P  P  S  R  L  C  G  I  *  N :   *  G  K  M  *  E  F  T  K  *  *  L  C  I  C  N  F  I  N  W  K  K  V  C  I  R  K  S  K  K  T  K  R  *  L  N  *  *  *  I  *  M  Q  D  I  R  S  Y  G  S  K  H  E  G  T  H  *  N  R  *  M  Y  *  I  L  W  S  *  *  K  F  L  W  N  F  I  *  *  F  A  *  A  S  I  C  F  Q  I  M  C  P  C  L  L  S  T  M  P  Q  Y  C  *  P  L  L  Q  L  G  C  W  *  R :   S  I  L  A  R  H  M  Q  Q  E  Q  E  V  E  E  *  W  C  C  *  R  W  C  *  C  S  C  S  I  S  F  I  F  I  K  L  F  L  H  L  I  I  K  *  Y  I   </second_frame>
            <third_frame>   F  F  P  T  T  K  K  K  Y  T  K  K  *  S  N  S  Q  L  N  K  R  E  K  Q  E  K  *  M  G  S  S  M  K  S  S  L  I  L  F  F  T  C  S  L  F  L  Q  V  A  Y  A  V  Y  K   : T  E  V  K  C  E  S  L  P  N  S  D  C  A  F  A  I  S  S  T  G  K  R  C  V  L  E  K  A  K  K  P  K  D  D  L  I  S  S  E  Y  E  C  K  T  S  E  V  M  V  Q  N  M  K  E  H  I  E  T  D  E  C  I  E  S  C  G  L  N  R  N  F  F  G  I  S  S  D  D  L  L  E  P  R  F  V  S  K  L  C  A  P  A  C  Y  Q  Q  C  P  N  I  V  D  L  Y  F  N  L  A  A  G  E   : G  A  Y  L  P  D  I  C  N  K  N  K  K  L  K  S  S  G  A  A  E  D  G  V  D  A  P  A  P  S  P  S  F  L  *  N  Y  F  Y  T  L  L  *  N  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120770" stop="120851"/>
                    <exon start="121345" stop="121680"/>
                    <exon start="121885" stop="121988"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGSSMKSSLILFFTCSLFLQVAYAVYKTEVKCESLPNSDCAFAISSTGKRCVLEKAKKPKDDLISSEYECKTSEVMVQNMKEHIETDECIESCGLNRNFFGISSDDLLEPRFVSKLCAPACYQQCPNIVDLYFNLAAGEGAYLPDICNKNKKLKSSGAAEDGVDAPAPSPSFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="153917" PGL_stop="151351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="153917" e_stop="153899"/>
            <exon e_start="153814" e_stop="153709"/>
            <exon e_start="153517" e_stop="153432"/>
            <exon e_start="153300" e_stop="153112"/>
            <exon e_start="152743" e_stop="152579"/>
            <exon e_start="151668" e_stop="151555"/>
            <exon e_start="151360" e_stop="151351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.783" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.154" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="153917" e_stop="153899" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="153898" i_stop="153815" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="153814" e_stop="153709" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.783" acc_prob="0.983">
            <gDNA_intron_boundary i_start="153708" i_stop="153518" i_length="191"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="153517" e_stop="153432" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.894" acc_prob="0.154">
            <gDNA_intron_boundary i_start="153431" i_stop="153301" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="153300" e_stop="153112" e_length="189"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="153111" i_stop="152744" i_length="368"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="152743" e_stop="152579" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="152578" i_stop="151669" i_length="910"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="151668" e_stop="151555" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.905">
            <gDNA_intron_boundary i_start="151554" i_stop="151361" i_length="194"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="151360" e_stop="151351" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="153917" stop="153899"/>
              <exon start="153814" stop="153709"/>
              <exon start="153517" stop="153432"/>
              <exon start="153300" stop="153112"/>
              <exon start="152743" stop="152579"/>
              <exon start="151668" stop="151555"/>
              <exon start="151360" stop="151351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGAATCTTATTCGATCAG : GATGGTAATCCTAGACTCTCTTGCTTTGGCTTGATGAAGAACAGTAGAGACGGGAAGAGTTATAGTACAAACTTGGCTTTCACTCCCCCAGAGTACTTGAAAACAG : GAAGAGTGACCCCTGAAAGTGTAGTTTACAGCTTTGGAACAATGTTGCTAGATCTTTTGAGTGGAAAGCATATTCCTCCAAGCCAT : GCACTTGATCTAATTCGAGGGAAGAATTTTTTGATGCTTATGGATTCTTGTTTGGAGGGTCATTTTTCAAATGATGATGGAAGTGAGCTTGTTCGGCTAGCCACTCGTTGTTTACAATATGAGGCACGTGAGAGGCCAAATGCAAAATCTCTCGTCACTTCACTTATGTCTCTTCAGAAAGAAACAGAG : GTGCCATCACATGTTTTGTTGGGTATTCCACATGGAACTGAAACCCCACCTCAGCCATTATTATTGACTCCAATGGGTGAAGCATGCTTGAGAAAGGATCTTACTGCCCTTCATGAAATATTGGAAAAGAGTGGGTACAAGGATGATGAAGGAATTGCCAATGAG : CTTTCGTTCCAAATGTGGACAAATCAGATGCAGGAAACCTTGAATTCTAAGAAGCATGGTGATGCTGCTTTCCGAGCCAAGGATTTCATTACTGCTATTGACTGCTACACACAG : TTCATTGATG</gDNA_template>
            <first_frame> *  N  L  I  R  S   : G  W  *  S  *  T  L  L  L  W  L  D  E  E  Q  *  R  R  E  E  L  *  Y  K  L  G  F  H  S  P  R  V  L  E  N  R :   K  S  D  P  *  K  C  S  L  Q  L  W  N  N  V  A  R  S  F  E  W  K  A  Y  S  S  K  P   : C  T  *  S  N  S  R  E  E  F  F  D  A  Y  G  F  L  F  G  G  S  F  F  K  *  *  W  K  *  A  C  S  A  S  H  S  L  F  T  I  *  G  T  *  E  A  K  C  K  I  S  R  H  F  T  Y  V  S  S  E  R  N  R   : G  A  I  T  C  F  V  G  Y  S  T  W  N  *  N  P  T  S  A  I  I  I  D  S  N  G  *  S  M  L  E  K  G  S  Y  C  P  S  *  N  I  G  K  E  W  V  Q  G  *  *  R  N  C  Q  *   : A  F  V  P  N  V  D  K  S  D  A  G  N  L  E  F  *  E  A  W  *  C  C  F  P  S  Q  G  F  H  Y  C  Y  *  L  L  H  T   : V  H  *   </first_frame>
            <second_frame>  R  I  L  F  D  Q  :  D  G  N  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  F  T  P  P  E  Y  L  K  T   : G  R  V  T  P  E  S  V  V  Y  S  F  G  T  M  L  L  D  L  L  S  G  K  H  I  P  P  S  H  :  A  L  D  L  I  R  G  K  N  F  L  M  L  M  D  S  C  L  E  G  H  F  S  N  D  D  G  S  E  L  V  R  L  A  T  R  C  L  Q  Y  E  A  R  E  R  P  N  A  K  S  L  V  T  S  L  M  S  L  Q  K  E  T  E  :  V  P  S  H  V  L  L  G  I  P  H  G  T  E  T  P  P  Q  P  L  L  L  T  P  M  G  E  A  C  L  R  K  D  L  T  A  L  H  E  I  L  E  K  S  G  Y  K  D  D  E  G  I  A  N  E  :  L  S  F  Q  M  W  T  N  Q  M  Q  E  T  L  N  S  K  K  H  G  D  A  A  F  R  A  K  D  F  I  T  A  I  D  C  Y  T  Q  :  F  I  D  </second_frame>
            <third_frame>   E  S  Y  S  I  R :   M  V  I  L  D  S  L  A  L  A  *  *  R  T  V  E  T  G  R  V  I  V  Q  T  W  L  S  L  P  Q  S  T  *  K  Q  :  E  E  *  P  L  K  V  *  F  T  A  L  E  Q  C  C  *  I  F  *  V  E  S  I  F  L  Q  A  M :   H  L  I  *  F  E  G  R  I  F  *  C  L  W  I  L  V  W  R  V  I  F  Q  M  M  M  E  V  S  L  F  G  *  P  L  V  V  Y  N  M  R  H  V  R  G  Q  M  Q  N  L  S  S  L  H  L  C  L  F  R  K  K  Q  R :   C  H  H  M  F  C  W  V  F  H  M  E  L  K  P  H  L  S  H  Y  Y  *  L  Q  W  V  K  H  A  *  E  R  I  L  L  P  F  M  K  Y  W  K  R  V  G  T  R  M  M  K  E  L  P  M  S :   F  R  S  K  C  G  Q  I  R  C  R  K  P  *  I  L  R  S  M  V  M  L  L  S  E  P  R  I  S  L  L  L  L  T  A  T  H  S :   S  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026P14.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="153916" stop="153899"/>
                    <exon start="153814" stop="153709"/>
                    <exon start="153517" stop="153432"/>
                    <exon start="153300" stop="153112"/>
                    <exon start="152743" stop="152579"/>
                    <exon start="151668" stop="151555"/>
                    <exon start="151360" stop="151352"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLKTGRVTPESVVYSFGTMLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGSELVRLATRCLQYEARERPNAKSLVTSLMSLQKETEVPSHVLLGIPHGTETPPQPLLLTPMGEACLRKDLTALHEILEKSGYKDDEGIANELSFQMWTNQMQETLNSKKHGDAAFRAKDFITAIDCYTQFID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 41 chains have been computed
$ 
$ memory statistics:
$ 272200 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 10888 bytes was the average size of a spliced alignment
$ 25976 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1528 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 52 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 02:36:13
-->
