<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-13 02:26:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-DiGt5/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-AhRYcO/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-AhRYcO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326041" ref_strand="+" ref_description="SGN-U326041        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C2H2 type) family protein, contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr5:745643-749002 FORWARD | Aliases: F15A17.180, F15A17_180(evalue: 4e-84, score=308) genbank/nr: Zinc(evalue: 3e-83, score=311)">
      <seq>tcttatctccctctttaaagatcttaaaaactttgagcaaagccaagaaaaaaaaaatgtctttataagttttaagttcttgttttttacttagtgtttttcaaagattcaaactttagtgtcttttattgtgttttttgttcttttggaacaatcttaaaaataaaaataaaaacttgtgagttttaagttctttttatctgtttgtatttgaaaaaaaaattaagctttttttgtgagttagctttgttttctagctccaacaaagctaaaacaaaaaccccattttcttaaaaatgatgtctggagatttgttttcaattcatcaacaacaacatcagcaagtactagttgaacaaaaccctaaccctaaagctaattcttcttctaagaaaagaagaaatcttccaggtacaccagatccagatgctgaagtgattgcaatatcaccaaaaacactgatggctacaaacagattcatatgtgaaatctgcaacaaaggttttcagagggatcaaaacttgcaactccatagaagaggacataatcttccatggaagttgaagcaaaggaacaaacaagaaatagttaagaagaaagtttacatatgtccagaaaagagttgtgtacatcatgatccatcaagagcacttggtgaccttactggtataaagaagcattttagcagaaaacatggtgagaaaaaatggaagtgtgaaaagtgttcaaagaaatatgcagttcaatctgattggaaagctcatactaagacttgtggtactagagagtataaatgtgactgtggaacactcttttccaggaaagatagtttcattacccatagagctttctgtgatgctttagctgaagagagtgcaagaatcactactaccaacaatttgaacttcaaccagcaacaacaacaacctgttggagtttcacaaattgggacaagttttgctcaagattttacaagtatgacaactgtgaatccactacatcagcatcagcaaaaaccaagattgtcactttggctaaatcaagctaataacaacatgtcatcacaaagttcaaatctttttggcttaccagatcatcatatggtccaaatcccatctcataacatgtttggtacttaaccaaatacctaaccccacccccaccaccaccaccaccaccaacaccaacactaacactaacacccctgcaaccccaaacccccctataccaatgtcagcaacagcccttctacaaaaagcagcacaaatggggtcaacaaaaagcactccaaactacttttccacacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DiGt5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0072G22.2" temp_strand="-" temp_description="C09HBa0072G22.2  EF576813.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0072G22 sequenced_by:sistemasgenomicos">
        <position start="8740" stop="6491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8740" g_stop="8381" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="420" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8380" i_stop="7995" i_length="386">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7994" g_stop="7595" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="820" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7594" i_stop="7281" i_length="314">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7280" g_stop="6791" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="1310" r_length="490" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.2" gen_strand="-" ref_id="SGN-U326041" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1250</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8740" e_stop="8381"/>
          <exon e_start="7994" e_stop="7595"/>
          <exon e_start="7280" e_stop="6791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAGGTAAATTTAGAACTATATGTTCATTTAACTAGCGTTTGGTCATAGATTTTTTTTCGAGTAGTATTTTCAAATTTACCACCTTGTGAACTATGAAACACTCCTTCATAAACTTAGAGTTTCAACTTCAAAACCTATGGCCGAACGAAGAGCTTAGTACAATAGTACAAAAATATTCACTTTTGCATGTCAAAGATTGAATCTTTATTGTTTCTTTCTTCAAACTACTTTGTATTGTTTCTTGTTGTGTGTGTATATACTAGTGTTGTAAAGATTGAATCTTTATTGTTTCTTTCTTCAAACTACTTTGTATTGTTTCTTGTTGTATGTGTGTATATACTAGTGTTGTAAAGATTGAATCTTTTTAACTTTGTTGTTATGTTAAACAGATCCAGATGCTGAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCAAAGGAACAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGAGTTGTGTACATCATGATCCATCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGACTTGTGGTACTAGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAGGTAATTAATTTTGGTACCATCTAGTAATAATATTATGTTCTTGTTTTAGGAATATTTGTTTCAAAACTGAATTAAATGCTCATTCATTCATGGAAAAGTTCAATTTATTGCTCCCTCCTGACTACAAACTACCCACCATTAAGCTCCCGTTTGGTCATAAATTTTGATAAACTTGTGTTTAGGCATGCACTAGTCAGTTTTTGAGCCGACTAGCTAGCATCCCTGCCCTCTTAAAATCTATGACCAAACGCTAGTTAAATTGTGTATGTTATTGTGCTTTAGTTTAATGATGAGTTCTTTTTTCTTGTACACAGGAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACTACTACCAACAATTTGAACTTCAACCAGCAACAACAACAACCTGTTGGAGTTTCACAAATTGGGACAAGTTTTGCTCAAGATTTTACAAGTATGACAACTGTGAATCCACTACATCAGCATCAGCAAAAACCAAGATTGTCACTTTGGCTAAATCAAGCTAATAACAACATGTCATCACAAAGTTCAAATCTTTTTGGCTTACCAGATCATCATATGGTCCAAATCCCATCTCATAACATGTTTGGTAC-TAACCAAATACTCAACCCCACCCCCACCACCACCACCACCACCAACACCAACACTAACACTAACACCCCTGCAACCCCAAACCCCCCTATACCAATGTCAGCAACAGCCCTTCTACAAAAAGCAGCACAAATGGGGTCAACAAAAAGCACTCCAAACTACTTTTCCAACACATTT</genome_strand>
        <mrna_strand>CTTTATAAGTTTTAAGTTCTTGTTTTTTACTTAGTGTTTTTCAAAGATTCAAACTTTAGTGTCTTTTATTGTGTTTTTTGTTCTTTTGGAACAATCTTAAAAATAAAAATAAAAACTTGTGAGTTTTAAGTTCTTTTTATCTGTTTGTATTTGAAAAAAAAATTAAGCTTTTTTTGTGAGTTAGCTTTGTTTTCTAGCTCCAACAAAGCTAAAACAAAAACCCCATTTTCTTAAAAATGATGTCTGGAGATTTGTTTTCAATTCATCAACAACAACATCAGCAAGTACTAGTTGAACAAAACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAG..................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGATGCTGAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCAAAGGAACAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGAGTTGTGTACATCATGATCCATCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGACTTGTGGTACTAGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAG..........................................................................................................................................................................................................................................................................................................................GAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACTACTACCAACAATTTGAACTTCAACCAGCAACAACAACAACCTGTTGGAGTTTCACAAATTGGGACAAGTTTTGCTCAAGATTTTACAAGTATGACAACTGTGAATCCACTACATCAGCATCAGCAAAAACCAAGATTGTCACTTTGGCTAAATCAAGCTAATAACAACATGTCATCACAAAGTTCAAATCTTTTTGGCTTACCAGATCATCATATGGTCCAAATCCCATCTCATAACATGTTTGGTACTTAACCAAATACCTAACCCCACCCCCACCACCACCACCACCACCAACACCAACACTAACACTAACACCCCTGCAACCCCAAACCCCCCTATACCAATGTCAGCAACAGCCCTTCTACAAAAAGCAGCACAAATGGGGTCAACAAAAAGCACTCCAAACTACTTTTCC-ACACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-AhRYcO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319839" ref_strand="+" ref_description="SGN-U319839        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | valyl-tRNA synthetase / valine--tRNA ligase (VALRS), nearly identical to SP:P93736 Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS) {Arabidopsis thaliana} | chr1:5008239-5014512 REVERSE | Aliases: T5E21.11, T5E21_11(evalue: 0, score=631) genbank/nr: gi|7527726|gb|AAF63175.1| T5E21.11 [Arabidopsis thaliana] >gi|25293099|pir||F86280 protein T5E21.11 [imported] - Arabidopsis thaliana (evalue: 3e-179, score=631)">
      <seq>tggttttcgtctggtcttttcccattatctgtattggggtggccagataatactgcagatttcaaaacattttatccaacttcagttcttgaaaccggacatgatattctcttcttctgggtcgcacgaatggtaatgttgggaataaagctgggaggtgatcttccattttcaaaggtttatttgcatccaatgatccgcgatgctcatgggcgtaagatgtcgaagtcgttgggaaatgttattgatccccttgaagttattaatggaatcacacttgatggtcttcataagagattaaaggagggtaacctagacgcaaaagaatttgagagggcaaaagagggacaggcaaaggactttcctgatggtattcctgaatgtggtgcagatgctcttcgatttgcccttgtctcatacactgcccagtccgataagatcaatcttgatattcagagagtggttggttatcgtcaatggtgtaacaaactgtggaatgccattaggtttgccatgagtaaattgggtgaagattacacccctccaacaaagatagttcctcatgaaatgccttttagctgccagtggatactctcagcacttaacaaggccatagcaagaactgtctcatccctggaatcttatgatttctccgatgcagcaacagcagtatattcttggtggcagtttcagttgtgtgatgtgtttatagaagtaatcaagccatacttcactggtgataatccagaatttgtatctgcaagaagatctgctcaggacaccttgtggctttgcttagataacgggttgagattactccatccatttatgccttttgtcaccgaagaattgtggcagcgccttcctgctagcggggattctataaagaaagaatctatagtgataagtgattatccttcatatgtagagagctggaataatgataatgtggaaactgagatggaaaaggtgtcatccattgttagaggactgaggtcgaagagggcattgttgcctccaaaggagagatttgcaaggcgagaagcgtttgtgctttgccggacaaatgatactgttgagatcataaaaagccgcgaacttgagatttctactttagctacactgtcatctttgaaggtctcaagtgacactgatgcagctccaactcaatggctgacagaagtggtggatgaatcaatcacagtttttctcgaggataaggggactatcattaaccctgaggctgaagttgaaaggctcaaaaagaagagagaggagacgagaaagcaatatgaaaccttaaccaaaaccatgagtacctctggctacaaagagaaagttcgtgctaacgttcacgaagaaaatacattaaaacttggtgccctcaagcaagaactggaatcattcgaagaaaatattgagcgtctcatacgtcaaatggaggcactataattggagtaatttcatcatgttgtgccttgattgttcaacacattctgcccctatatcttttttcattttttaaaatgttttaagttaaattttgctgttattagtgtaccatgttgcattttttttgtatactaattacgattcttgaaatttttgagataacaaggtgatttctgtaatttgtgatatgaataggcttaatattagcttcctcaatttgctaatattttgcccttgaccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DiGt5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0072G22.2" temp_strand="-" temp_description="C09HBa0072G22.2  EF576813.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0072G22 sequenced_by:sistemasgenomicos">
        <position start="22615" stop="16532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22315" g_stop="22139" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22138" i_stop="21665" i_length="474">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21664" g_stop="21413" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="429" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21412" i_stop="21325" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.594" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21324" g_stop="20824" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="930" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20823" i_stop="20287" i_length="537">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20286" g_stop="20180" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="931" r_stop="1037" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20179" i_stop="19283" i_length="897">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.576" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19282" g_stop="19183" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1038" r_stop="1137" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19182" i_stop="18459" i_length="724">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18458" g_stop="18310" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1138" r_stop="1286" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18309" i_stop="17246" i_length="1064">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17245" g_stop="16833" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1287" r_stop="1699" r_length="413" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1700" polyA_stop="1712"/>
      <MATCH_line gen_id="C09HBa0072G22.2" gen_strand="-" ref_id="SGN-U319839" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1699</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22315" e_stop="22139"/>
          <exon e_start="21664" e_stop="21413"/>
          <exon e_start="21324" e_stop="20824"/>
          <exon e_start="20286" e_stop="20180"/>
          <exon e_start="19282" e_stop="19183"/>
          <exon e_start="18458" e_stop="18310"/>
          <exon e_start="17245" e_stop="16833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAGGTTAGCAAACCTAATCCTCCCTAATATGGAAAACCTTTTTTCTTGTTGAGCTTTATGTTATAAGTGGATTTTGATTCTTTGAATCTATTTTAGGGATCATGTTCACCAAGATAGTTCTGGTTCCTTGATTTATGGTTTTTTACTCCTTAAAACTGACTCTGTGAGCTTGCTCACATTGCTGGTCCCAACCCGGATTAAGGAGGTGGGTTACTGAGGGTCAAATCAGAAACAACCTCTCTACCCCATAAAGGTAGGGGTAGGGGTAAGGCTGCATACATCTTACCCTCACTCCACTTGTGGGATTATACTGGATTTGTTGTTGTTGGTCTCAGTCCTTGACATTGAATATTAAGTAGAGATATTGGCTACGAAAGTTATATTTAGTAGTTCATTTTTTATCTACATGAAGTAGTTGTATAACTTGACCGTTCTGCTGTCATCTAACAAATCTATTCATTTTAAAATGATTTGTAGGTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAGGTTTGTCACATTTGTGCCTTAAGATTTAATAAGCTGTTTCTTTTGACTTTCTTTGGATATTGCTAACTTTCTTAAGTTGTCCTTCCAGTCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAGGTATGATCTAATCACAAATTTTAAATGTCTAGAACTAGCAAATAGACATATTACCTTTGTTGGTGGCTGTTAACTGTTAAGTAAGTTTTGGTGTGAACTTTTTCTTTTCAGTTGACTCGGACTGAAGTGTAGTTTCTTTTCCTTCTTTTCCTCTTCTTCTTGCTGTTGGTTTTGAATGATGATATAGTGTCTTGGTTACTCTAAACTTAGGTATATGATCTGTTTCTGAAAAATCAATTTAGAATCGTGCATGTACGATGTTAGACTTCTCATCTAGTATCTGTGAAAAGAAAACCATGTAGACAATTCATTTTGCAAGAATACGTATTTGAAATATGTTAACTTGCTTGAGGATCTGAAACAAGCAGCTTATCAACACGAGTCTAGTAGTAGAAAACAGGACTTAGTATAGTGTGAGCTTATCAAGACGAGTCTAGTTGTAAAAAACAAGACTTAATATAATGCTCCATGCCAGCTGCTACTTGATTCTTATATTGTCTAATGACCATGTTGCTTTACGTCTCTTCAATTTTTCAGAGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAGGTAAACAATTGGGTGTATCTGTCTCCTGGGTCACTTATAATTTCCATACATAAAAAGCATTTCAAATGGTATTTCTGGTTTTCTTCATGAATCTCTTTGTATGTGAAGTTTATGTTATAGATGCCATTCAATTTTTATTATCTGTTGAGCATTAAGCCAAAATTTTGTGAACATGTGTAAACTGTCCTCATAAGAATGGTTGAAGTACCATAGGAATTGTTTTTGAATGAAAAAAAAGTATTAGGGTGGATAACGAGCATGTTAATTCCATTTCGTGTTTAATGGGATTGAATATGTCGTCATTCAATATGGCTTTTTGACTATTAGAGATGACAGATGTGAAAAGGTTGAATTTATCTTGGAAGTGGTGGAAATGCAAGTTTGTTCTTAAAAGTGGAAGCACTTAAAGTACACACAAGTGGGGTGGGAGTACAATGCAAATAAAGAAGGCTCAACCATTCAAGTGCCTTTCATGATATAATCGACAATCTATGAATTAGTTAATGTCTTCATTCCTAATCCAACCTCTCATCTAAGTTGTTTGAGGTATCACTCTTTCTTGTCCATCTTTAGAAAATTGTAATTCACTTCGCCAGCTTTCATACTGCAGCTATTGGTATTTTTCTGTTCAGTTGTAATTTTTTTTGGAGGACCTATCCCAAATGCCACGATATACATCATGTATAACACTTGGATGAAGGATACCAGTGTGCTGTAATCTGTTTGACTATGTGTCTGTGAGTCATTCATACAGTCATGCACCCTTAATATATGTTAATGATTGCAAGAGAGATTTATATGTTAGGCTTTTTTTGTATGACTTGAAAAAATGTTCTCATAAATCCAATTAGGACATTTAACTTTCCAAACTAATGGTGGTGATCGTGCTGTCCGCAGGCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAGGTATCTCTTTCTATGTCTGGTTTGGTTCTCTTTGATTCAAAGCTTTTTAATGTCTTCCTAGTGTTGTCTTCTCAGTTTTGAAATAAGAAAACAAATTAGATTGCTAATGTTGCTTATTTATGAACTATTTTGAGAAAAATGGCTTATACTTGTATTTCAATTGAATGCACATATTAGCTGGAAACATTGTCCAACCAATGTATGCTGTTTTGATGTGCATTGCACAACAACACTCTAAAAAACTAGTTCTATTGTTTTCCATTCTATGTTGCTCAGGCTCTTCCAAAATGTCAACGGTGCATGTTGGATTCTCCAAAAGTAGTGTATTTTTGGAAAATCCAACACGGGTGTGGCATCAAAAGTGAAGAGTCAGCGCAACTTAGTTTCCAAATTGTATCAAAAACATGTTATTAATCCTCATCTTCCCAAAAAGTAGAGAATCTTCAACATCCCTATTTAGTTGTTTACCTTTCCTCTTCCACATGATATGAAGCTGGATATCTTCAAACATCCTTAATGGCCAGTCATCAGGTCATGATCAACAACCACCTTGCCCCAACATGTTCTTAGTCGAGGACACAATCAATTGAAACCTTTGCCTTTTGAGGGAGAAGTGGAATTAGATGATTCATATTTGCTGACAATATCATAGTTCATGCATGTTATTTTTTATTATTTTTCCTCATTTTGCTGAATCTATATTTCTTGCGCTTATCTTCATCAGGTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAAGTAAGTGAAATTTCGAAGGCTGGACTATTTACTACAAAATGATTTTCTGGCTAGATGAATAAGTGCCTTTCAATTGCTTTCCTCGGGGAGCGAGACTCTCTTTTTCTTGTCAGGCAATGAAATAAAATTAGCTTTTTGTGTAGAAGAGAAGTAAAAGCAATGTTGAATCCTATGTTGTTTGAACTCTTCAAATATGTTGATAGATGCATGTCGGATCCTCCAAGAGTAATACATTTTTGGAGGATCTGATAGGGCGCAACAACATTTTTGGAGAGTCTGATAGGGTGCAACAACATTTTTGGAGAGTCTGAGCAACATGGATTGAATCAGTATATAAGACATTTCAACTTACAAAAACAGGAAATTTGTGATGGTCTTTAGTTTTATGAGTTACTGAAACTCGAGGAAAGTTCCAATCAGGTAAGCCGTCATTATGTTGAGAAAGATTCTGGTTGAATTAGGAAAATGTGTAAAAGATCAGTCTTGTTTCTTGTTAAGAAGTCCCACATCGGAAAAGGGTAGGCAATTGGTCTTGTTATATGGACTTGGACAATCACCCCCTCATAAGCTAGTTTTTGGGGTTGAGTTAAGCCCAAGATCCATCTTTACATGGTTTAGAGCCAAGCCCATCCCAGTTCTTCGTTCACCGATGTTGGGGCCTTCTATTGTATTGTCCAAGCTCCCGATAACGAGGTCTGAGTGTGCGAGGGGTGTTAAGAAGTCCCATATCAGAAAAAGGATGACGGCCAATTGGTCTCGTTATATGGACTTGGACAATCCTCCTCCACTCATAAGCTAGTTTTTAGGGTTGAGTTAGGTCCTAGATCTATCTTTACATTTTTCACTAGATATTACTATCTTTTTTCCAAATATTTATCAATTTAACGTAGTGATGGTCCGGAATCATGAATTGTACTCAATTTTGTTCAGCTAGTGCATCATTCAGTTGTCTTCGTTCAAAAGTGGGCTGAAGTTATATATCGCGAAATTTGAGTCAATTTAAATTGTGAAGTTTACTAGCTGTTCAATTTGTGTCATTGTACCATCCTTTTCTTCTTTTGCAGGCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCTTCCTCAATTTGCTAATATTTTGCCCTTGACCACATAAA</genome_strand>
        <mrna_strand>TGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAG........................................................................................TCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCTTCCTCAATTTGCTAATATTTTGCCCTTGACCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-AhRYcO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U328842" ref_strand="+" ref_description="SGN-U328842        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | valyl-tRNA synthetase / valine--tRNA ligase (VALRS), nearly identical to SP:P93736 Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS) {Arabidopsis thaliana} | chr1:5008239-5014512 REVERSE | Aliases: T5E21.11, T5E21_11(evalue: 2e-107, score=384) genbank/nr: gi|7527726|gb|AAF63175.1| T5E21.11 [Arabidopsis thaliana] >gi|25293099|pir||F86280 protein T5E21.11 [imported] - Arabidopsis thaliana (evalue: 1e-105, score=384)">
      <seq>ggaagacagcttccaatagtttgtgatgatatacttgtagatatgaactttgggactggtgctgttaagataactccagcccatgacccaaatgattttgaggttggacagcgtcacaaactagaattcataagtatttttactgatgatgggaatataaatagcaatgctggtccagactttgaaggaatgcctcgtttcaaagctcgtgtcgctgtaacagaagctttaaaagaaaagggtctctacaggggtgctaagaataatgagatgcgccttgggatttgttcaagaagcaatgatgtagtggagcctcttataaagcctcaatggtttgtcaactgcaaaattatggccaagcaggctttggatgctgttgtggatgaggataatcagaaactggagatcatcccaaagcaatatggtgctgaatggagaagatggcttgagaatattcgtgattggtgcatctcaaggcaactttggtggggtcatcgtattcctgcttggtatgtcacactgagtgatgataagcagaaggaatttggtgtgtctgacgatcactggattgttgctagaaatgaagaagaagctcgagatttggcttctaggaaattttcggggaagaagattgttgagctctctcaagatccagatgtgctggatacctggttttcgtctggtcttttcccattatctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DiGt5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0072G22.2" temp_strand="-" temp_description="C09HBa0072G22.2  EF576813.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0072G22 sequenced_by:sistemasgenomicos">
        <position start="26080" stop="21983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25780" g_stop="25712" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25711" i_stop="25616" i_length="96">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25615" g_stop="25445" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="240" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25444" i_stop="23144" i_length="2301">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23143" g_stop="22944" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="440" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22943" i_stop="22545" i_length="399">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22544" g_stop="22283" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="702" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.2" gen_strand="-" ref_id="SGN-U328842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25780" e_stop="25712"/>
          <exon e_start="25615" e_stop="25445"/>
          <exon e_start="23143" e_stop="22944"/>
          <exon e_start="22544" e_stop="22283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAGGTATTCTATATCATTATGTTCTGAATGTGGTGAAATAATTGTGGTGTCTCAAGTACTCATCATTGCTTATGGACCATTCTTTGAATATCCTGGCAGATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAGGTATCTTCATTACTTTTCTGTACTGTTTTAGCTGGAAATAAAATGTTAATAGACTGCATGCATGTATTGATACACAAATTTGTTCTAATTTATGTTGTCTCACATATAAAAGATCCATGGATGTGATGGACTCACTTCCTTCTGAGATATCCATGTATATACCCATGTCTGTCCAATATGAGTATATATAGGAAGGACTTCATAAGCATAATTTTCATAAATGTTTGGTCCTCATTTACATAGTCTCTCTCCATTTGAAACCAACATTCCGTATCTTGGAAAATGTAAGGTATTTTTTTATAAGGTAATATACTTCTATTATTATCTGGAAAAAAACTGTAAGAGGCATATAAAAAGTAGAACTACATGTAGATGAAGTGGGGAGAACCATAATGGAATAGTTGAGGTGTGTGCGTGCAAGCATGCCCTCACCATCATCAGAAAAGAAAAAATAAAGTAGAGACTACATCAATAGAGGATTCTCTACAAAATGCACCCGTCATCTAACTGATAGGTTGACGAAAGCTCTTTTGTTCAGGTCATTCGTTTCCCTCATATTCCATGACAATATCTTCAACTTCTATGAACCACAATCTTCTGCTTTCCCCATCCCTTTACCCCTTTGCCTCTGGCCCTCTGTCCCTTTCATCACCTGACCTTTCCTCCAATTCACCACAATATTACCCCTACCTTCTTTCACGCCCTAGCTATCCCTCACCACTCTTCTATCTCCTTGCTCTACAGCATGTATCAACATAAATGAAAAAAGCATTTTCAATTGTAAGATTTGTCTTGTACATGTGTTGCCCATGCTCAAAACATGCTATTGGGCATTGTGTTTATGACCATTCTTTAGCATTATGCTCCAGAGGTAATGGAAGCCTAGTATATAAGTATACTTCATATGGAATTCCAATTTGCTATACAGAGGGATTAGTTATGTTCCTAACCAAAAACCTTTATCAGTATGTACCTAACCAAAAACATATATGCTATATGAAAGTATGACGCAAGCCCACATTATGGATGTATGAACTAAAGTACAACACTACAACCTGAGCTAACATGCTTTAGTTTATTTCTTATTAACTAATTCTGTTTGGTATGTTAGATATGTTCCATATGATTACAATAAAAAGTTCATTGAAATATAGGCTTTTCGTATTTTTTCAATTTTATTGATTGGAAGGACCTTAATGCGTATATCAAATGTAAACTTTGTGATCCAGCTATGTTATCGTTAGGTTCTTGTTGTACTTCCCCCTTTGAGTGTGGTAGTTGTAATAGGGAATCACAATCTCTGTCCTCAACTCCTGATGTACATGTCATTTCCTATTTTGGTACATCCAAGAGCTTTTACACGCTTAGACACAGTAAAATTATCCTATCCAACTATTACAAATTTCAAGTTGTCAAATCCATGAACAACTAAATACAAATTTTGTTGCAAATAATGCTAATAATCTACAATTTAACGATCGCTGGAACCTATTTAAAATATAAATTGAATAAAACAAATTCAGTGAATAGATGTTACAATAGATAAATGCCTTACAAGCCAATTAGTTTTCATGGTTGAGCAGTGTTACTTACTACAAGGTTTGTGCATGAATGTTGGACTGAGCCACTTTTGGCGTCAGCTGCATGCATGAAACTACAATTTTAATGATCACTGGAACCTATTTAAAATATAAACTACAATAAAACAAATTTAGTGAATAGATAGAGCCAACGGTACAATATGTAAATGCCTTACAAGCCAATTAGTTTCGTGGTTGAGTAGTCTTATTTACTAAAAGGTTTGTGAATGAATGTTGGCTGAGCCACTTTTGGTGTCAGCTGCATGCATAGCTTATCAGTGGAAACAAGTTTTGTGCCAGGGCCACAGTAGCAGAGGATCTGCCTTGGTATTGATCTTCCATTTTTGAAATTCAGTTTCAACAAGAGCCCAGGCCTTTCCTGTTTATGTTTTTTTTCCTTAACCTAGTAGAACTCCATAACATAAATTACAATAGATCTTGAGTATTTTATTTACTTGGAATTGGGTAAAGCACATACTGTTCCAACTTTTTCTTTTCTCTATATAACATTGTGTCTCACTTTTAGCTCTCTGAGTTCTCGAGTCTTTTGAATCGTGCTTAAGTTATGACCTATGAAAGCATGGTTAGATTTGAGGATGCCCCGTAGAAGAAACTGTGCTACATAACATTGGGCTTAAGGATTTTATATTGAAAATTGTGACCTGGGATGATTTGAGTTCTCTGTGGCTAAGATGCATTGTCTTTGACTTATGTGTTACAGGGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAGGTGATTTTGGATTTTAAAAAAAAGGTTGAATAAATGCTAGGGTTCAAATGAGACATCAATTTGTGCTGTGGTCTCTACGACCCTATACATATGTACACTGGTGTAATTTGATGCACTGTGTTTTAGTTTCTAATTGATATCGTCTTTTCTTCATTGCGGCAATGGATATCCTATCATTTACTTTTTGTGCCAGTATCTCATCAGACATCAACGCATACATGCAAAAAACCTGGTTGTGATTTTTGTTATGGATTCAATTATACACTTAATACAGGATATACTTCCATAAAATGAACTTTATACAGGATATTTTGTGCCATTTTCTCATTTCTTGATGCATTATCTGCTTCAAAATCTTTTGTCCTCTATGTCAAGAAGACTTATGTGGTGAACATGCAGATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTA</genome_strand>
        <mrna_strand>GGAAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAG................................................................................................ATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................ATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-AhRYcO/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326354" ref_strand="+" ref_description="SGN-U326354        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | valyl-tRNA synthetase / valine--tRNA ligase (VALRS), nearly identical to SP:P93736 Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS) {Arabidopsis thaliana} | chr1:5008239-5014512 REVERSE | Aliases: T5E21.11, T5E21_11(evalue: 4e-67, score=251) genbank/nr: gi|1890130|gb|AAB49704.1| valyl tRNA synthetase [Arabidopsis thaliana](evalue: 3e-65, score=251)">
      <seq>taaacttcataacggcttgccttagggtactcgtcaaagcctcccagtattcactaactcagtccaccacctccatcggccgccggcggccatttccaacgaacttttctcatctccgacgtcgtattttctcttctaaacccgataatatggctgactcggagagtaaatcacacgagacagggaaaaattgcaaaccggaggcagcagcatcagaaggaaaacaattgacacctgaagagctggagaagaagaagaagaaagaagaaaaggctagagagaaagagttgaaaaaactcaaggctgcacaaaaagccgaagcagcaaaacaggcacaagccagctccactgtgtcaaagactgctaagaagaagagctcaaaaagggatggtggagaggagaaccctgaggattttgttgatccagaaacacgtctgggggagaagaagaaactctcccgagaaatggcaaagacttttaatcccagtgctgtagagaaatcgtggtatgcgtggtgggaaaagtccaatttctttgttgcagacccaaacagcgctaaaccaccttttgtgattgtcttgcccccaccaaatgtgactggtgctctccatataggacatgcacttactgctgccatcgaggatactattattcgttggcggagaatgtctggatacaacaccttgtgggtccccgggatggatcatgctgggatagcaactcaggttgttgtggagaagaagatcatgcgagaaaggaatttgactagacatgatattggtcgggagaagtttgttgctgaggtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-DiGt5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0072G22.2" temp_strand="-" temp_description="C09HBa0072G22.2  EF576813.2 htgs_phase:2 submitted_to_sgn_as:C09HBa0072G22 sequenced_by:sistemasgenomicos">
        <position start="30304" stop="26538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30004" g_stop="29853" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29852" i_stop="29768" i_length="85">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29767" g_stop="29717" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="203" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29716" i_stop="29643" i_length="74">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29642" g_stop="29574" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="272" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29573" i_stop="29361" i_length="213">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29360" g_stop="29301" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="332" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29300" i_stop="29045" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29044" g_stop="28875" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="502" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28874" i_stop="28774" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28773" g_stop="28701" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="575" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28700" i_stop="27295" i_length="1406">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27294" g_stop="27229" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="641" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27228" i_stop="27148" i_length="81">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27147" g_stop="27064" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="725" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27063" i_stop="26918" i_length="146">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26917" g_stop="26840" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="803" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="26839" i_stop="26549" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="26548" g_stop="26543" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="809" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0072G22.2" gen_strand="-" ref_id="SGN-U326354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0072G22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30004" e_stop="29853"/>
          <exon e_start="29767" e_stop="29717"/>
          <exon e_start="29642" e_stop="29574"/>
          <exon e_start="29360" e_stop="29301"/>
          <exon e_start="29044" e_stop="28875"/>
          <exon e_start="28773" e_stop="28701"/>
          <exon e_start="27294" e_stop="27229"/>
          <exon e_start="27147" e_stop="27064"/>
          <exon e_start="26917" e_stop="26840"/>
          <exon e_start="26548" e_stop="26543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTCATAACGGCTTGCCTTAGGGTACTCGTCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATGGTTAGATTTTTTCGTATACTTATTGATTTCATTTCTGAAAATCAAACTTCCTGTGCTTTATATGAATGAATTGAAATGATTGTAGGCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAGGTAGTTATTGTAATACACATTGTGATTTTTCTGTATTGAGCTTGCTTTTTTGATTGACTTTGAGTATTTGATAGGCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAGGTCTGTAGACTACTTCTTTTTTTTGGACTTTGCTGTGATGGATGATTCCTCAGATTGAACCGTTGCAATTCGATACTGTGTTTTGGCTTTTATACTATCAATTCCTTGTTACAATCATTATTTCAGTGATATTCAACTCTAACTTATGATTGAATCAGTTATTTGATTGATTCAGAATATCTAAGTGGTCCCTTTGTGTTTATTGTTTGGCAGGCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAGGTAAAACTACTTTGTTTATTTATCTAATTATGTTTGATACTTGTGTACTTCATAAATGCATAACTTGGTAGAATTGCTCTTAGCTATCTCTGTTATGCTGTTTGCGATATACTGATTGAGGAACAGGAATTGCCGACTCTCGGTACCACTGGCAATACATCCAGCAAGCCTGGACAATGATGAAATAATGAAATTTCTTGTTACACTAATTGCTTTTTCCAAGCTTCTCTGACTTGGTTCGTCTGTATTAATTAAGGCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATCGTGAGTTCGAAATTGGCTTACCTTAATTTTTCAATTTACTGATTCAGACAAAGATTCTATTGTTAGCACACTGTTATGATTCTTTATGCTAACCTGACTAGGTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATTGTGAGTTTATCTTCTGACATCTTGTGCTGTTGTTTAAATTGATGCATTTGGTGTGAATGATATTTAGGACATATAGGATCTATAAGGAGCTTGGTTCATCTACAAATGCAACTATTGTAGTTCGAGTTCTTAGGATAATATTTTAAGGAGAAGCACAAGTTGGTACTCATGGCATATGACAATTTTTACTTGCTGGGATGTTAATGTTTTGAATTTATGTTCGTACAGCTAGACCTTTTTATTTGATATCTTAACTTGATTTGGTTCCACCTATTTTCTACCCTCTTTCTCATGGATCACAAAAGTACCCTTTAACAATTTCGAAGTTGCTAATGAGGAAGAGAATTTTCAGTTGCTCATTTTCCTCAAGTACTCTCGGACAGTTTTGTTAATCTTAACTTCTCATATTCTGTTTTGGTGTCATGATATGGGTTTGGAAACCTATTCTCTTCTCCCTTCCTCAGTTGTTCATTATCCTGGAGTACTTGGACACTTTGTCAATTTCAATAGATCATTTCTCTAGGATTTTACAGTGGATGGTGCTATTATGCCAGTTAAGAGGGAAATTCGTTTACCCTCTTTAGAGTTTGGATTAGGTGAAATTTTATTAAGAACAGAAACATTTGTGGCTGGTGATTTCAGTTGGGGAAACAAGTTATAGTTAGATGATTCTGCAGTGAACTAATAAAACCATACATGGCAGTCAAAATCATTTATAACAGCCAACTTGTTCCAAAAAGAAAGCAAATAATACAATTGAACATAAGATTAAGATGGTGTTTGTATTGGCTTAAAAGCGGGTCAAACCTACTTTTAAGTCAATTTTTGACTCCCGGAAGTGGTTGGCAAATATAAAAAATTAACTTAAAATAAGTCAAAAATGACTTATAATAAGTTGGGAAGTGTTTAATAGGTCAAACATGATTTAAGATGAGTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTTCCTTCCTTTTTATTTTTTGACTTAAGTCATTTCAGTTTGAATTTTTATTTTTGACTTAAAAGCTACTTCTTCAAGCCAATCCAAATGGGCTCGAAGTATAAAATACTTTTTGTCTAAAAAATTTCTGAAGTTGCTTTCTCCTTGGATTGCCCACCAAATGGCTGCCTGGATGTAATATCATGTCGTCAATGACACTCTGATTTACTTACTTACAGTGAATGCTCATGTGGAGCCAAAAGTAAAATAACTCTATAAAGAGTACTATAATGAAGAACTTAACTGGTATTTTCATTGGACAATCACTTGGTAAATTGGATTAATAATTTGGAAGAAAATAAGTTGAAATGAAAATCTTGTTTGTTACTGTGTTCCTGGTCTAAGCTTGGACTTCTTTCTCCCAAGCTGCTTACCTCTACATCTAAATGCAGGTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAGGTATCAAAATTCAGAATCACTGGGCCTAGTTCTCTGAGTGTTCTTCCGCTTATACAGATTTATATTTACCTTTGTGTCCAGGATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAGGTTGTGTTTCAAACATATCAAATCCTGACTTCAAACATCGTTCTAGGGTGTTAAGTTTATCTGGTTTATCTTTACCTATAATTACATGTTCTTTTATGTTGTTTATCTACTATTTTCTAAGTGTGCATCGTGGATGGTGAATCTAGGTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAGGTGAGTATATACTGCTAACACCTTATTTCACGTCTTGTGCTTATTTTGAAGTCTATGATTAGTTGTTTTTCATCCCATAAAAATCATTTCAATGACTTAAATATCCTTCCAATTGTTGTTTTCAAGCAAATAAGATCTTTCCAATTTTTGCCACTTTCTCAGTCTGGAATAAGGTGTCTTCTTTTGAAGATTTAAATAAAGAAAAGCAAGTGCTAATTTTAACAATTATTTGCACACATAGGTTTATTTTGTTAATTGTAATATTAACTGTACTCGCTAAGGTTTTTGTAGGTCTGG</genome_strand>
        <mrna_strand>TAAACTTCATAACGGCTTGCCTTAGGGTACTCGTCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATG.....................................................................................GCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAG..........................................................................GCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG.....................................................................................................................................................................................................................GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAG................................................................................................................................................................................................................................................................GCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATC.....................................................................................................GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAG.................................................................................GATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAG..................................................................................................................................................GTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAG...................................................................................................................................................................................................................................................................................................GTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8740" PGL_stop="6791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8740" e_stop="8381"/>
            <exon e_start="7994" e_stop="7595"/>
            <exon e_start="7280" e_stop="6791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8740" e_stop="8381" e_length="360"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="8380" i_stop="7995" i_length="386"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7994" e_stop="7595" e_length="400"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="7594" i_stop="7281" i_length="314"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="7280" e_stop="6791" e_length="490"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8740" stop="8381"/>
              <exon start="7994" stop="7595"/>
              <exon start="7280" stop="6791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCTAACCCTAAAGCTAATTCTTCTTCTAAGAAAAGAAGAAATCTTCCAGGTACACCAG : ATCCAGATGCTGAAGTGATTGCAATATCACCAAAAACACTGATGGCTACAAACAGATTCATATGTGAAATCTGCAACAAAGGTTTTCAGAGGGATCAAAACTTGCAACTCCATAGAAGAGGACATAATCTTCCATGGAAGTTGAAGCAAAGGAACAAACAAGAAATAGTTAAGAAGAAAGTTTACATATGTCCAGAAAAGAGTTGTGTACATCATGATCCATCAAGAGCACTTGGTGACCTTACTGGTATAAAGAAGCATTTTAGCAGAAAACATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCAAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATACTAAGACTTGTGGTACTAGAGAGTATAAATGTGACTGTGGAACACTCTTTTCCAG : GAAAGATAGTTTCATTACCCATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGAATCACTACTACCAACAATTTGAACTTCAACCAGCAACAACAACAACCTGTTGGAGTTTCACAAATTGGGACAAGTTTTGCTCAAGATTTTACAAGTATGACAACTGTGAATCCACTACATCAGCATCAGCAAAAACCAAGATTGTCACTTTGGCTAAATCAAGCTAATAACAACATGTCATCACAAAGTTCAAATCTTTTTGGCTTACCAGATCATCATATGGTCCAAATCCCATCTCATAACATGTTTGGTACTAACCAAATACTCAACCCCACCCCCACCACCACCACCACCACCAACACCAACACTAACACTAACACCCCTGCAACCCCAAACCCCCCTATACCAATGTCAGCAACAGCCCTTCTACAAAAAGCAGCACAAATGGGGTCAACAAAAAGCACTCCAAACTACTTTTCCAACACATTT</gDNA_template>
            <first_frame> F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  T  L  T  L  K  L  I  L  L  L  R  K  E  E  I  F  Q  V  H  Q  :  I  Q  M  L  K  *  L  Q  Y  H  Q  K  H  *  W  L  Q  T  D  S  Y  V  K  S  A  T  K  V  F  R  G  I  K  T  C  N  S  I  E  E  D  I  I  F  H  G  S  *  S  K  G  T  N  K  K  *  L  R  R  K  F  T  Y  V  Q  K  R  V  V  Y  I  M  I  H  Q  E  H  L  V  T  L  L  V  *  R  S  I  L  A  E  N  M  V  R  K  N  G  S  V  K  S  V  Q  R  N  M  Q  F  N  L  I  G  K  L  I  L  R  L  V  V  L  E  S  I  N  V  T  V  E  H  S  F  P   : G  K  I  V  S  L  P  I  E  L  S  V  M  L  *  L  K  R  V  Q  E  S  L  L  P  T  I  *  T  S  T  S  N  N  N  N  L  L  E  F  H  K  L  G  Q  V  L  L  K  I  L  Q  V  *  Q  L  *  I  H  Y  I  S  I  S  K  N  Q  D  C  H  F  G  *  I  K  L  I  T  T  C  H  H  K  V  Q  I  F  L  A  Y  Q  I  I  I  W  S  K  S  H  L  I  T  C  L  V  L  T  K  Y  S  T  P  P  P  P  P  P  P  P  P  T  P  T  L  T  L  T  P  L  Q  P  Q  T  P  L  Y  Q  C  Q  Q  Q  P  F  Y  K  K  Q  H  K  W  G  Q  Q  K  A  L  Q  T  T  F  P  T  H   </first_frame>
            <second_frame>  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  P  *  P  *  S  *  F  F  F  *  E  K  K  K  S  S  R  Y  T  R :   S  R  C  *  S  D  C  N  I  T  K  N  T  D  G  Y  K  Q  I  H  M  *  N  L  Q  Q  R  F  S  E  G  S  K  L  A  T  P  *  K  R  T  *  S  S  M  E  V  E  A  K  E  Q  T  R  N  S  *  E  E  S  L  H  M  S  R  K  E  L  C  T  S  *  S  I  K  S  T  W  *  P  Y  W  Y  K  E  A  F  *  Q  K  T  W  *  E  K  M  E  V  *  K  V  F  K  E  I  C  S  S  I  *  L  E  S  S  Y  *  D  L  W  Y  *  R  V  *  M  *  L  W  N  T  L  F  Q  :  E  R  *  F  H  Y  P  *  S  F  L  *  C  F  S  *  R  E  C  K  N  H  Y  Y  Q  Q  F  E  L  Q  P  A  T  T  T  T  C  W  S  F  T  N  W  D  K  F  C  S  R  F  Y  K  Y  D  N  C  E  S  T  T  S  A  S  A  K  T  K  I  V  T  L  A  K  S  S  *  *  Q  H  V  I  T  K  F  K  S  F  W  L  T  R  S  S  Y  G  P  N  P  I  S  *  H  V  W  Y  *  P  N  T  Q  P  H  P  H  H  H  H  H  H  Q  H  Q  H  *  H  *  H  P  C  N  P  K  P  P  Y  T  N  V  S  N  S  P  S  T  K  S  S  T  N  G  V  N  K  K  H  S  K  L  L  F  Q  H  I  </second_frame>
            <third_frame>   F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  Y  P  N  P  K  A  N  S  S  S  K  K  R  R  N  L  P  G  T  P   : D  P  D  A  E  V  I  A  I  S  P  K  T  L  M  A  T  N  R  F  I  C  E  I  C  N  K  G  F  Q  R  D  Q  N  L  Q  L  H  R  R  G  H  N  L  P  W  K  L  K  Q  R  N  K  Q  E  I  V  K  K  K  V  Y  I  C  P  E  K  S  C  V  H  H  D  P  S  R  A  L  G  D  L  T  G  I  K  K  H  F  S  R  K  H  G  E  K  K  W  K  C  E  K  C  S  K  K  Y  A  V  Q  S  D  W  K  A  H  T  K  T  C  G  T  R  E  Y  K  C  D  C  G  T  L  F  S  R :   K  D  S  F  I  T  H  R  A  F  C  D  A  L  A  E  E  S  A  R  I  T  T  T  N  N  L  N  F  N  Q  Q  Q  Q  Q  P  V  G  V  S  Q  I  G  T  S  F  A  Q  D  F  T  S  M  T  T  V  N  P  L  H  Q  H  Q  Q  K  P  R  L  S  L  W  L  N  Q  A  N  N  N  M  S  S  Q  S  S  N  L  F  G  L  P  D  H  H  M  V  Q  I  P  S  H  N  M  F  G  T  N  Q  I  L  N  P  T  P  T  T  T  T  T  T  N  T  N  T  N  T  N  T  P  A  T  P  N  P  P  I  P  M  S  A  T  A  L  L  Q  K  A  A  Q  M  G  S  T  K  S  T  P  N  Y  F  S  N  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0072G22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8738" stop="8381"/>
                    <exon start="7994" stop="7595"/>
                    <exon start="7280" stop="6791"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1248</number_coding_nucleotides>
                  <number_encoded_amino_acids>416</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYPNPKANSSSKKRRNLPGTPDPDAEVIAISPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRNKQEIVKKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTTNNLNFNQQQQQPVGVSQIGTSFAQDFTSMTTVNPLHQHQQKPRLSLWLNQANNNMSSQSSNLFGLPDHHMVQIPSHNMFGTNQILNPTPTTTTTTNTNTNTNTPATPNPPIPMSATALLQKAAQMGSTKSTPNYFSNTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="25780" PGL_stop="16833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25780" e_stop="25712"/>
            <exon e_start="25615" e_stop="25445"/>
            <exon e_start="23143" e_stop="22944"/>
            <exon e_start="22544" e_stop="22139"/>
            <exon e_start="21664" e_stop="21413"/>
            <exon e_start="21324" e_stop="20824"/>
            <exon e_start="20286" e_stop="20180"/>
            <exon e_start="19282" e_stop="19183"/>
            <exon e_start="18458" e_stop="18310"/>
            <exon e_start="17245" e_stop="16833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.594" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.576" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25780" e_stop="25712" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25711" i_stop="25616" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25615" e_stop="25445" e_length="171"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25444" i_stop="23144" i_length="2301"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23143" e_stop="22944" e_length="200"/>
          </exon>
          <intron i_serial="3" don_prob="0.858" acc_prob="0.981">
            <gDNA_intron_boundary i_start="22943" i_stop="22545" i_length="399"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22544" e_stop="22139" e_length="406"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="22138" i_stop="21665" i_length="474"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21664" e_stop="21413" e_length="252"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.594">
            <gDNA_intron_boundary i_start="21412" i_stop="21325" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="21324" e_stop="20824" e_length="501"/>
          </exon>
          <intron i_serial="6" don_prob="0.932" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20823" i_stop="20287" i_length="537"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="20286" e_stop="20180" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.576">
            <gDNA_intron_boundary i_start="20179" i_stop="19283" i_length="897"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="19282" e_stop="19183" e_length="100"/>
          </exon>
          <intron i_serial="8" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19182" i_stop="18459" i_length="724"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18458" e_stop="18310" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.931" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18309" i_stop="17246" i_length="1064"/>
          </intron>
          <exon e_serial="10" e_score="0.995">
            <gDNA_exon_boundary e_start="17245" e_stop="16833" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25780" stop="25712"/>
              <exon start="25615" stop="25445"/>
              <exon start="23143" stop="22944"/>
              <exon start="22544" stop="22283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22315" stop="22139"/>
              <exon start="21664" stop="21413"/>
              <exon start="21324" stop="20824"/>
              <exon start="20286" stop="20180"/>
              <exon start="19282" stop="19183"/>
              <exon start="18458" stop="18310"/>
              <exon start="17245" stop="16833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGACAGCTTCCAATAGTTTGTGATGATATACTTGTAGATATGAACTTTGGGACTGGTGCTGTTAAG : ATAACTCCAGCCCATGACCCAAATGATTTTGAGGTTGGACAGCGTCACAAACTAGAATTCATAAGTATTTTTACTGATGATGGGAATATAAATAGCAATGCTGGTCCAGACTTTGAAGGAATGCCTCGTTTCAAAGCTCGTGTCGCTGTAACAGAAGCTTTAAAAGAAAAG : GGTCTCTACAGGGGTGCTAAGAATAATGAGATGCGCCTTGGGATTTGTTCAAGAAGCAATGATGTAGTGGAGCCTCTTATAAAGCCTCAATGGTTTGTCAACTGCAAAATTATGGCCAAGCAGGCTTTGGATGCTGTTGTGGATGAGGATAATCAGAAACTGGAGATCATCCCAAAGCAATATGGTGCTGAATGGAGAAG : ATGGCTTGAGAATATTCGTGATTGGTGCATCTCAAGGCAACTTTGGTGGGGTCATCGTATTCCTGCTTGGTATGTCACACTGAGTGATGATAAGCAGAAGGAATTTGGTGTGTCTGACGATCACTGGATTGTTGCTAGAAATGAAGAAGAAGCTCGAGATTTGGCTTCTAGGAAATTTTCGGGGAAGAAGATTGTTGAGCTCTCTCAAGATCCAGATGTGCTGGATACCTGGTTTTCGTCTGGTCTTTTCCCATTATCTGTATTGGGGTGGCCAGATAATACTGCAGATTTCAAAACATTTTATCCAACTTCAGTTCTTGAAACCGGACATGATATTCTCTTCTTCTGGGTCGCACGAATGGTAATGTTGGGAATAAAGCTGGGAGGTGATCTTCCATTTTCAAAG : GTTTATTTGCATCCAATGATCCGCGATGCTCATGGGCGTAAGATGTCGAAGTCGTTGGGAAATGTTATTGATCCCCTTGAAGTTATTAATGGAATCACACTTGATGGTCTTCATAAGAGATTAAAGGAGGGTAACCTAGACGCAAAAGAATTTGAGAGGGCAAAAGAGGGACAGGCAAAGGACTTTCCTGATGGTATTCCTGAATGTGGTGCAGATGCTCTTCGATTTGCCCTTGTCTCATACACTGCCCAG : TCCGATAAGATCAATCTTGATATTCAGAGAGTGGTTGGTTATCGTCAATGGTGTAACAAACTGTGGAATGCCATTAGGTTTGCCATGAGTAAATTGGGTGAAGATTACACCCCTCCAACAAAGATAGTTCCTCATGAAATGCCTTTTAGCTGCCAGTGGATACTCTCAGCACTTAACAAGGCCATAGCAAGAACTGTCTCATCCCTGGAATCTTATGATTTCTCCGATGCAGCAACAGCAGTATATTCTTGGTGGCAGTTTCAGTTGTGTGATGTGTTTATAGAAGTAATCAAGCCATACTTCACTGGTGATAATCCAGAATTTGTATCTGCAAGAAGATCTGCTCAGGACACCTTGTGGCTTTGCTTAGATAACGGGTTGAGATTACTCCATCCATTTATGCCTTTTGTCACCGAAGAATTGTGGCAGCGCCTTCCTGCTAGCGGGGATTCTATAAAGAAAGAATCTATAGTGATAAGTGATTATCCTTCATATGTAGAG : AGCTGGAATAATGATAATGTGGAAACTGAGATGGAAAAGGTGTCATCCATTGTTAGAGGACTGAGGTCGAAGAGGGCATTGTTGCCTCCAAAGGAGAGATTTGCAAG : GCGAGAAGCGTTTGTGCTTTGCCGGACAAATGATACTGTTGAGATCATAAAAAGCCGCGAACTTGAGATTTCTACTTTAGCTACACTGTCATCTTTGAAG : GTCTCAAGTGACACTGATGCAGCTCCAACTCAATGGCTGACAGAAGTGGTGGATGAATCAATCACAGTTTTTCTCGAGGATAAGGGGACTATCATTAACCCTGAGGCTGAAGTTGAAAGGCTCAAAAAGAAGAGAGAGGAGACGAGAAA : GCAATATGAAACCTTAACCAAAACCATGAGTACCTCTGGCTACAAAGAGAAAGTTCGTGCTAACGTTCACGAAGAAAATACATTAAAACTTGGTGCCCTCAAGCAAGAACTGGAATCATTCGAAGAAAATATTGAGCGTCTCATACGTCAAATGGAGGCACTATAATTGGAGTAATTTCATCATGTTGTGCCTTGATTGTTCAACACATTCTGCCCCTATATCTTTTTTCATTTTTTAAAATGTTTTAAGTTAAATTTTGCTGTTATTAGTGTACCATGTTGCATTTTTTTTGTATACTAATTACGATTCTTGAAATTTTTGAGATAACAAGGTGATTTCTGTAATTTGTGATATGAATAGGCTTAATATTAGCTTCCTCAATTTGCTAATATTTTGCCCTTGACCACATAAA</gDNA_template>
            <first_frame> G  R  Q  L  P  I  V  C  D  D  I  L  V  D  M  N  F  G  T  G  A  V  K  :  I  T  P  A  H  D  P  N  D  F  E  V  G  Q  R  H  K  L  E  F  I  S  I  F  T  D  D  G  N  I  N  S  N  A  G  P  D  F  E  G  M  P  R  F  K  A  R  V  A  V  T  E  A  L  K  E  K  :  G  L  Y  R  G  A  K  N  N  E  M  R  L  G  I  C  S  R  S  N  D  V  V  E  P  L  I  K  P  Q  W  F  V  N  C  K  I  M  A  K  Q  A  L  D  A  V  V  D  E  D  N  Q  K  L  E  I  I  P  K  Q  Y  G  A  E  W  R  R :   W  L  E  N  I  R  D  W  C  I  S  R  Q  L  W  W  G  H  R  I  P  A  W  Y  V  T  L  S  D  D  K  Q  K  E  F  G  V  S  D  D  H  W  I  V  A  R  N  E  E  E  A  R  D  L  A  S  R  K  F  S  G  K  K  I  V  E  L  S  Q  D  P  D  V  L  D  T  W  F  S  S  G  L  F  P  L  S  V  L  G  W  P  D  N  T  A  D  F  K  T  F  Y  P  T  S  V  L  E  T  G  H  D  I  L  F  F  W  V  A  R  M  V  M  L  G  I  K  L  G  G  D  L  P  F  S  K  :  V  Y  L  H  P  M  I  R  D  A  H  G  R  K  M  S  K  S  L  G  N  V  I  D  P  L  E  V  I  N  G  I  T  L  D  G  L  H  K  R  L  K  E  G  N  L  D  A  K  E  F  E  R  A  K  E  G  Q  A  K  D  F  P  D  G  I  P  E  C  G  A  D  A  L  R  F  A  L  V  S  Y  T  A  Q  :  S  D  K  I  N  L  D  I  Q  R  V  V  G  Y  R  Q  W  C  N  K  L  W  N  A  I  R  F  A  M  S  K  L  G  E  D  Y  T  P  P  T  K  I  V  P  H  E  M  P  F  S  C  Q  W  I  L  S  A  L  N  K  A  I  A  R  T  V  S  S  L  E  S  Y  D  F  S  D  A  A  T  A  V  Y  S  W  W  Q  F  Q  L  C  D  V  F  I  E  V  I  K  P  Y  F  T  G  D  N  P  E  F  V  S  A  R  R  S  A  Q  D  T  L  W  L  C  L  D  N  G  L  R  L  L  H  P  F  M  P  F  V  T  E  E  L  W  Q  R  L  P  A  S  G  D  S  I  K  K  E  S  I  V  I  S  D  Y  P  S  Y  V  E  :  S  W  N  N  D  N  V  E  T  E  M  E  K  V  S  S  I  V  R  G  L  R  S  K  R  A  L  L  P  P  K  E  R  F  A  R :   R  E  A  F  V  L  C  R  T  N  D  T  V  E  I  I  K  S  R  E  L  E  I  S  T  L  A  T  L  S  S  L  K  :  V  S  S  D  T  D  A  A  P  T  Q  W  L  T  E  V  V  D  E  S  I  T  V  F  L  E  D  K  G  T  I  I  N  P  E  A  E  V  E  R  L  K  K  K  R  E  E  T  R  K :   Q  Y  E  T  L  T  K  T  M  S  T  S  G  Y  K  E  K  V  R  A  N  V  H  E  E  N  T  L  K  L  G  A  L  K  Q  E  L  E  S  F  E  E  N  I  E  R  L  I  R  Q  M  E  A  L  *  L  E  *  F  H  H  V  V  P  *  L  F  N  T  F  C  P  Y  I  F  F  H  F  L  K  C  F  K  L  N  F  A  V  I  S  V  P  C  C  I  F  F  V  Y  *  L  R  F  L  K  F  L  R  *  Q  G  D  F  C  N  L  *  Y  E  *  A  *  Y  *  L  P  Q  F  A  N  I  L  P  L  T  T  *  </first_frame>
            <second_frame>  E  D  S  F  Q  *  F  V  M  I  Y  L  *  I  *  T  L  G  L  V  L  L  R :   *  L  Q  P  M  T  Q  M  I  L  R  L  D  S  V  T  N  *  N  S  *  V  F  L  L  M  M  G  I  *  I  A  M  L  V  Q  T  L  K  E  C  L  V  S  K  L  V  S  L  *  Q  K  L  *  K  K  R :   V  S  T  G  V  L  R  I  M  R  C  A  L  G  F  V  Q  E  A  M  M  *  W  S  L  L  *  S  L  N  G  L  S  T  A  K  L  W  P  S  R  L  W  M  L  L  W  M  R  I  I  R  N  W  R  S  S  Q  S  N  M  V  L  N  G  E   : D  G  L  R  I  F  V  I  G  A  S  Q  G  N  F  G  G  V  I  V  F  L  L  G  M  S  H  *  V  M  I  S  R  R  N  L  V  C  L  T  I  T  G  L  L  L  E  M  K  K  K  L  E  I  W  L  L  G  N  F  R  G  R  R  L  L  S  S  L  K  I  Q  M  C  W  I  P  G  F  R  L  V  F  S  H  Y  L  Y  W  G  G  Q  I  I  L  Q  I  S  K  H  F  I  Q  L  Q  F  L  K  P  D  M  I  F  S  S  S  G  S  H  E  W  *  C  W  E  *  S  W  E  V  I  F  H  F  Q  R :   F  I  C  I  Q  *  S  A  M  L  M  G  V  R  C  R  S  R  W  E  M  L  L  I  P  L  K  L  L  M  E  S  H  L  M  V  F  I  R  D  *  R  R  V  T  *  T  Q  K  N  L  R  G  Q  K  R  D  R  Q  R  T  F  L  M  V  F  L  N  V  V  Q  M  L  F  D  L  P  L  S  H  T  L  P  S :   P  I  R  S  I  L  I  F  R  E  W  L  V  I  V  N  G  V  T  N  C  G  M  P  L  G  L  P  *  V  N  W  V  K  I  T  P  L  Q  Q  R  *  F  L  M  K  C  L  L  A  A  S  G  Y  S  Q  H  L  T  R  P  *  Q  E  L  S  H  P  W  N  L  M  I  S  P  M  Q  Q  Q  Q  Y  I  L  G  G  S  F  S  C  V  M  C  L  *  K  *  S  S  H  T  S  L  V  I  I  Q  N  L  Y  L  Q  E  D  L  L  R  T  P  C  G  F  A  *  I  T  G  *  D  Y  S  I  H  L  C  L  L  S  P  K  N  C  G  S  A  F  L  L  A  G  I  L  *  R  K  N  L  *  *  *  V  I  I  L  H  M  *  R :   A  G  I  M  I  M  W  K  L  R  W  K  R  C  H  P  L  L  E  D  *  G  R  R  G  H  C  C  L  Q  R  R  D  L  Q   : G  E  K  R  L  C  F  A  G  Q  M  I  L  L  R  S  *  K  A  A  N  L  R  F  L  L  *  L  H  C  H  L  *  R :   S  Q  V  T  L  M  Q  L  Q  L  N  G  *  Q  K  W  W  M  N  Q  S  Q  F  F  S  R  I  R  G  L  S  L  T  L  R  L  K  L  K  G  S  K  R  R  E  R  R  R  E   : S  N  M  K  P  *  P  K  P  *  V  P  L  A  T  K  R  K  F  V  L  T  F  T  K  K  I  H  *  N  L  V  P  S  S  K  N  W  N  H  S  K  K  I  L  S  V  S  Y  V  K  W  R  H  Y  N  W  S  N  F  I  M  L  C  L  D  C  S  T  H  S  A  P  I  S  F  F  I  F  *  N  V  L  S  *  I  L  L  L  L  V  Y  H  V  A  F  F  L  Y  T  N  Y  D  S  *  N  F  *  D  N  K  V  I  S  V  I  C  D  M  N  R  L  N  I  S  F  L  N  L  L  I  F  C  P  *  P  H  K </second_frame>
            <third_frame>   K  T  A  S  N  S  L  *  *  Y  T  C  R  Y  E  L  W  D  W  C  C  *   : D  N  S  S  P  *  P  K  *  F  *  G  W  T  A  S  Q  T  R  I  H  K  Y  F  Y  *  *  W  E  Y  K  *  Q  C  W  S  R  L  *  R  N  A  S  F  Q  S  S  C  R  C  N  R  S  F  K  R  K   : G  S  L  Q  G  C  *  E  *  *  D  A  P  W  D  L  F  K  K  Q  *  C  S  G  A  S  Y  K  A  S  M  V  C  Q  L  Q  N  Y  G  Q  A  G  F  G  C  C  C  G  *  G  *  S  E  T  G  D  H  P  K  A  I  W  C  *  M  E  K  :  M  A  *  E  Y  S  *  L  V  H  L  K  A  T  L  V  G  S  S  Y  S  C  L  V  C  H  T  E  *  *  *  A  E  G  I  W  C  V  *  R  S  L  D  C  C  *  K  *  R  R  S  S  R  F  G  F  *  E  I  F  G  E  E  D  C  *  A  L  S  R  S  R  C  A  G  Y  L  V  F  V  W  S  F  P  I  I  C  I  G  V  A  R  *  Y  C  R  F  Q  N  I  L  S  N  F  S  S  *  N  R  T  *  Y  S  L  L  L  G  R  T  N  G  N  V  G  N  K  A  G  R  *  S  S  I  F  K   : G  L  F  A  S  N  D  P  R  C  S  W  A  *  D  V  E  V  V  G  K  C  Y  *  S  P  *  S  Y  *  W  N  H  T  *  W  S  S  *  E  I  K  G  G  *  P  R  R  K  R  I  *  E  G  K  R  G  T  G  K  G  L  S  *  W  Y  S  *  M  W  C  R  C  S  S  I  C  P  C  L  I  H  C  P   : V  R  *  D  Q  S  *  Y  S  E  S  G  W  L  S  S  M  V  *  Q  T  V  E  C  H  *  V  C  H  E  *  I  G  *  R  L  H  P  S  N  K  D  S  S  S  *  N  A  F  *  L  P  V  D  T  L  S  T  *  Q  G  H  S  K  N  C  L  I  P  G  I  L  *  F  L  R  C  S  N  S  S  I  F  L  V  A  V  S  V  V  *  C  V  Y  R  S  N  Q  A  I  L  H  W  *  *  S  R  I  C  I  C  K  K  I  C  S  G  H  L  V  A  L  L  R  *  R  V  E  I  T  P  S  I  Y  A  F  C  H  R  R  I  V  A  A  P  S  C  *  R  G  F  Y  K  E  R  I  Y  S  D  K  *  L  S  F  I  C  R   : E  L  E  *  *  *  C  G  N  *  D  G  K  G  V  I  H  C  *  R  T  E  V  E  E  G  I  V  A  S  K  G  E  I  C  K  :  A  R  S  V  C  A  L  P  D  K  *  Y  C  *  D  H  K  K  P  R  T  *  D  F  Y  F  S  Y  T  V  I  F  E   : G  L  K  *  H  *  C  S  S  N  S  M  A  D  R  S  G  G  *  I  N  H  S  F  S  R  G  *  G  D  Y  H  *  P  *  G  *  S  *  K  A  Q  K  E  E  R  G  D  E  K  :  A  I  *  N  L  N  Q  N  H  E  Y  L  W  L  Q  R  E  S  S  C  *  R  S  R  R  K  Y  I  K  T  W  C  P  Q  A  R  T  G  I  I  R  R  K  Y  *  A  S  H  T  S  N  G  G  T  I  I  G  V  I  S  S  C  C  A  L  I  V  Q  H  I  L  P  L  Y  L  F  S  F  F  K  M  F  *  V  K  F  C  C  Y  *  C  T  M  L  H  F  F  C  I  L  I  T  I  L  E  I  F  E  I  T  R  *  F  L  *  F  V  I  *  I  G  L  I  L  A  S  S  I  C  *  Y  F  A  L  D  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0072G22.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25780" stop="25712"/>
                    <exon start="25615" stop="25445"/>
                    <exon start="23143" stop="22944"/>
                    <exon start="22544" stop="22139"/>
                    <exon start="21664" stop="21413"/>
                    <exon start="21324" stop="20824"/>
                    <exon start="20286" stop="20180"/>
                    <exon start="19282" stop="19183"/>
                    <exon start="18458" stop="18310"/>
                    <exon start="17245" stop="17080"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2118</number_coding_nucleotides>
                  <number_encoded_amino_acids>706</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRQLPIVCDDILVDMNFGTGAVKITPAHDPNDFEVGQRHKLEFISIFTDDGNINSNAGPDFEGMPRFKARVAVTEALKEKGLYRGAKNNEMRLGICSRSNDVVEPLIKPQWFVNCKIMAKQALDAVVDEDNQKLEIIPKQYGAEWRRWLENIRDWCISRQLWWGHRIPAWYVTLSDDKQKEFGVSDDHWIVARNEEEARDLASRKFSGKKIVELSQDPDVLDTWFSSGLFPLSVLGWPDNTADFKTFYPTSVLETGHDILFFWVARMVMLGIKLGGDLPFSKVYLHPMIRDAHGRKMSKSLGNVIDPLEVINGITLDGLHKRLKEGNLDAKEFERAKEGQAKDFPDGIPECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAIRFAMSKLGEDYTPPTKIVPHEMPFSCQWILSALNKAIARTVSSLESYDFSDAATAVYSWWQFQLCDVFIEVIKPYFTGDNPEFVSARRSAQDTLWLCLDNGLRLLHPFMPFVTEELWQRLPASGDSIKKESIVISDYPSYVESWNNDNVETEMEKVSSIVRGLRSKRALLPPKERFARREAFVLCRTNDTVEIIKSRELEISTLATLSSLKVSSDTDAAPTQWLTEVVDESITVFLEDKGTIINPEAEVERLKKKREETRKQYETLTKTMSTSGYKEKVRANVHEENTLKLGALKQELESFEENIERLIRQMEAL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="30004" PGL_stop="26543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30004" e_stop="29853"/>
            <exon e_start="29767" e_stop="29717"/>
            <exon e_start="29642" e_stop="29574"/>
            <exon e_start="29360" e_stop="29301"/>
            <exon e_start="29044" e_stop="28875"/>
            <exon e_start="28773" e_stop="28701"/>
            <exon e_start="27294" e_stop="27229"/>
            <exon e_start="27147" e_stop="27064"/>
            <exon e_start="26917" e_stop="26840"/>
            <exon e_start="26548" e_stop="26543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.943" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30004" e_stop="29853" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29852" i_stop="29768" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29767" e_stop="29717" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29716" i_stop="29643" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29642" e_stop="29574" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29573" i_stop="29361" i_length="213"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29360" e_stop="29301" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.923">
            <gDNA_intron_boundary i_start="29300" i_stop="29045" i_length="256"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29044" e_stop="28875" e_length="170"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="28874" i_stop="28774" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28773" e_stop="28701" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.982">
            <gDNA_intron_boundary i_start="28700" i_stop="27295" i_length="1406"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27294" e_stop="27229" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.917" acc_prob="0.943">
            <gDNA_intron_boundary i_start="27228" i_stop="27148" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27147" e_stop="27064" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27063" i_stop="26918" i_length="146"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26917" e_stop="26840" e_length="78"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26839" i_stop="26549" i_length="291"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26548" e_stop="26543" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30004" stop="29853"/>
              <exon start="29767" stop="29717"/>
              <exon start="29642" stop="29574"/>
              <exon start="29360" stop="29301"/>
              <exon start="29044" stop="28875"/>
              <exon start="28773" stop="28701"/>
              <exon start="27294" stop="27229"/>
              <exon start="27147" stop="27064"/>
              <exon start="26917" stop="26840"/>
              <exon start="26548" stop="26543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326354" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAACTTCATAACGGCTTGCCTTAGGGTACTCGTCAAAGCCTCCCAGTATTCACTAACTCAGTCCACCACCTCCATCGGCCGCCGGCGGCCATTTCCAACGAACTTTTCTCATCTCCGACGTCGTATTTTCTCTTCTAAACCCGATAATATG : GCTGACTCGGAGAGTAAATCACACGAGACAGGGAAAAATTGCAAACCGGAG : GCAGCAGCATCAGAAGGAAAACAATTGACACCTGAAGAGCTGGAGAAGAAGAAGAAGAAAGAAGAAAAG : GCTAGAGAGAAAGAGTTGAAAAAACTCAAGGCTGCACAAAAAGCCGAAGCAGCAAAACAG : GCACAAGCCAGCTCCACTGTGTCAAAGACTGCTAAGAAGAAGAGCTCAAAAAGGGATGGTGGAGAGGAGAACCCTGAGGATTTTGTTGATCCAGAAACACGTCTGGGGGAGAAGAAGAAACTCTCCCGAGAAATGGCAAAGACTTTTAATCCCAGTGCTGTAGAGAAATC : GTGGTATGCGTGGTGGGAAAAGTCCAATTTCTTTGTTGCAGACCCAAACAGCGCTAAACCACCTTTTGTGATT : GTCTTGCCCCCACCAAATGTGACTGGTGCTCTCCATATAGGACATGCACTTACTGCTGCCATCGAG : GATACTATTATTCGTTGGCGGAGAATGTCTGGATACAACACCTTGTGGGTCCCCGGGATGGATCATGCTGGGATAGCAACTCAG : GTTGTTGTGGAGAAGAAGATCATGCGAGAAAGGAATTTGACTAGACATGATATTGGTCGGGAGAAGTTTGTTGCTGAG : GTCTGG</gDNA_template>
            <first_frame> *  T  S  *  R  L  A  L  G  Y  S  S  K  P  P  S  I  H  *  L  S  P  P  P  P  S  A  A  G  G  H  F  Q  R  T  F  L  I  S  D  V  V  F  S  L  L  N  P  I  I  W :   L  T  R  R  V  N  H  T  R  Q  G  K  I  A  N  R  R :   Q  Q  H  Q  K  E  N  N  *  H  L  K  S  W  R  R  R  R  R  K  K  K  R :   L  E  R  K  S  *  K  N  S  R  L  H  K  K  P  K  Q  Q  N  R :   H  K  P  A  P  L  C  Q  R  L  L  R  R  R  A  Q  K  G  M  V  E  R  R  T  L  R  I  L  L  I  Q  K  H  V  W  G  R  R  R  N  S  P  E  K  W  Q  R  L  L  I  P  V  L  *  R  N   : R  G  M  R  G  G  K  S  P  I  S  L  L  Q  T  Q  T  A  L  N  H  L  L  *  L :   S  C  P  H  Q  M  *  L  V  L  S  I  *  D  M  H  L  L  L  P  S  R :   I  L  L  F  V  G  G  E  C  L  D  T  T  P  C  G  S  P  G  W  I  M  L  G  *  Q  L  R :   L  L  W  R  R  R  S  C  E  K  G  I  *  L  D  M  I  L  V  G  R  S  L  L  L  R :   S   </first_frame>
            <second_frame>  K  L  H  N  G  L  P  *  G  T  R  Q  S  L  P  V  F  T  N  S  V  H  H  L  H  R  P  P  A  A  I  S  N  E  L  F  S  S  P  T  S  Y  F  L  F  *  T  R  *  Y   : G  *  L  G  E  *  I  T  R  D  R  E  K  L  Q  T  G   : G  S  S  I  R  R  K  T  I  D  T  *  R  A  G  E  E  E  E  E  R  R  K   : G  *  R  E  R  V  E  K  T  Q  G  C  T  K  S  R  S  S  K  T   : G  T  S  Q  L  H  C  V  K  D  C  *  E  E  E  L  K  K  G  W  W  R  G  E  P  *  G  F  C  *  S  R  N  T  S  G  G  E  E  E  T  L  P  R  N  G  K  D  F  *  S  Q  C  C  R  E  I  :  V  V  C  V  V  G  K  V  Q  F  L  C  C  R  P  K  Q  R  *  T  T  F  C  D   : C  L  A  P  T  K  C  D  W  C  S  P  Y  R  T  C  T  Y  C  C  H  R   : G  Y  Y  Y  S  L  A  E  N  V  W  I  Q  H  L  V  G  P  R  D  G  S  C  W  D  S  N  S   : G  C  C  G  E  E  D  H  A  R  K  E  F  D  *  T  *  Y  W  S  G  E  V  C  C  *   : G  L  </second_frame>
            <third_frame>   N  F  I  T  A  C  L  R  V  L  V  K  A  S  Q  Y  S  L  T  Q  S  T  T  S  I  G  R  R  R  P  F  P  T  N  F  S  H  L  R  R  R  I  F  S  S  K  P  D  N  M  :  A  D  S  E  S  K  S  H  E  T  G  K  N  C  K  P  E  :  A  A  A  S  E  G  K  Q  L  T  P  E  E  L  E  K  K  K  K  K  E  E  K  :  A  R  E  K  E  L  K  K  L  K  A  A  Q  K  A  E  A  A  K  Q  :  A  Q  A  S  S  T  V  S  K  T  A  K  K  K  S  S  K  R  D  G  G  E  E  N  P  E  D  F  V  D  P  E  T  R  L  G  E  K  K  K  L  S  R  E  M  A  K  T  F  N  P  S  A  V  E  K  S :   W  Y  A  W  W  E  K  S  N  F  F  V  A  D  P  N  S  A  K  P  P  F  V  I  :  V  L  P  P  P  N  V  T  G  A  L  H  I  G  H  A  L  T  A  A  I  E  :  D  T  I  I  R  W  R  R  M  S  G  Y  N  T  L  W  V  P  G  M  D  H  A  G  I  A  T  Q  :  V  V  V  E  K  K  I  M  R  E  R  N  L  T  R  H  D  I  G  R  E  K  F  V  A  E  :  V  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0072G22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30002" stop="29853"/>
                    <exon start="29767" stop="29717"/>
                    <exon start="29642" stop="29574"/>
                    <exon start="29360" stop="29301"/>
                    <exon start="29044" stop="28875"/>
                    <exon start="28773" stop="28701"/>
                    <exon start="27294" stop="27229"/>
                    <exon start="27147" stop="27064"/>
                    <exon start="26917" stop="26840"/>
                    <exon start="26548" stop="26543"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>807</number_coding_nucleotides>
                  <number_encoded_amino_acids>269</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFITACLRVLVKASQYSLTQSTTSIGRRRPFPTNFSHLRRRIFSSKPDNMADSESKSHETGKNCKPEAAASEGKQLTPEELEKKKKKEEKAREKELKKLKAAQKAEAAKQAQASSTVSKTAKKKSSKRDGGEENPEDFVDPETRLGEKKKLSREMAKTFNPSAVEKSWYAWWEKSNFFVADPNSAKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKIMRERNLTRHDIGREKFVAEVW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 6 chains have been computed
$ 
$ memory statistics:
$ 8352 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2088 bytes was the average size of a spliced alignment
$ 8520 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2840 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 6 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-13 02:27:04
-->
