<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 11:02:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E716286" ref_strand="+" ref_description="SGN-E716286 [FB16CE08]">
      <seq>ccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanannnnnnntttggggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121" g_stop="171" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="62" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="151" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="203" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="260" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1085" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="612" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1086" i_stop="2384" i_length="1299">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.544" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2385" g_stop="2469" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="697" r_length="85" r_score="0.494"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E716286" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1085"/>
          <exon e_start="2385" e_stop="2469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAACCAAACGTACAACTAGCATCAAATCTCTTTCTATCTATCTGAAAAGAATATATCACTCGATCGCTTTCGATATCATTGACGGTTATCATGGAATAGATAAAATCTCATGTTCAAATTCTAAAAATGTAAAAAGAGTTTCGATAGAGAATGCTTTCCCATTTAATCGGCGTTACATGGAGCGAAATCGAATGAAATATGAATAAAGAGGAAATTTTTAAAAAAAAATTAACATTAAAAAAAAAAATTTTAAAAAAATTGCTGGCTATGGGGTTCGAACCCATGCGCACTTATGTGCAGAAGATCTTAAGTCTTCCCCCTTAACCTCTCGGGCAAACCAGCTCAATGTTTAATTAAGTCAAAAATAATATATATAATATTTTGGTTTATGAATGTGGTATAAATTGATGTACTAAATAAATTATTACTTTTAAATCCAGACTTGAAATAGATCACGATTTTATTTTATACTACTCTTAGAGAATACGAGTATATAGAAGAAAGAACAGAAAAATAAAAAATCATAGAGCATAAAAGTTATTGTAAGAATATGGGAATATAGTCG</genome_strand>
        <mrna_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANANNNNNNNTTTGGGGGGGGGGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E357008" ref_strand="+" ref_description="SGN-E357008 [cTOS-22-I19]">
      <seq>ttcttgtcaccaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="1380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121" g_stop="171" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="71" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="160" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="212" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="269" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1080" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="616" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E357008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTT</genome_strand>
        <mrna_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E213943" ref_strand="+" ref_description="SGN-E213943 [cLEC-80-M3]">
      <seq>accaaccctatcaggggcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgacagtattgaagctgtgaatatgtccaaaaaggcaggatggggtgtaatgaccagtcaccgcagtggaaaaacacaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcatagcgtctcgcctagtacaaccagctgttgaggatctaagaggaactcggatcataggctgtttatgcatgagcaagcttccgcaagcccgttgagccctactagatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttatattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttggtttctgaggatttattatgattttgaattctgacaagaaaaaaaaagagttatttttaggcttggctactgtaaaactgtgatatgcgaggctctactatgtactaattaatattctgatggacttcggtgtatagatggcggccacacaacatgcccaaaaactcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="1381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121" g_stop="171" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="63" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="204" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="261" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1069" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="597" r_length="336" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E213943" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATG</genome_strand>
        <mrna_strand>AGGGGCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGACAGTATTGAAGCTGTGAATATGTCCAAAAAGGCAGGATGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAAAAACACAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCATAGCGTCTCGCCTAGTACAACCAG.............................................................................................CTGTTGAGGATCTAAGAGGAACTCGGATCATAGGCTGTTTATGCATGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAGATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTATATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGGTTTCTGAGGATTTATTATGATTTTGAATTCTGACAAGAAAAAAAAAGAGTTATTTTTAGGCTTGGCTACTGTAAAACTGTGATATGCGAGGCTCTACTATGTACTAATTAATATTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E214104" ref_strand="+" ref_description="SGN-E214104 [cLEC-80-M2]">
      <seq>accaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatatttttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="1369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121" g_stop="171" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="63" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="204" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="261" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1069" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="598" r_length="337" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E214104" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATA-TTTTGATG</genome_strand>
        <mrna_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E201182" ref_strand="+" ref_description="SGN-E201182 [cLEC-10-E1]">
      <seq>accaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="1138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121" g_stop="171" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="63" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="204" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="261" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="838" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="366" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E201182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAG</genome_strand>
        <mrna_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E255512" ref_strand="-" ref_description="SGN-E255512 [cLEG-30-H17]">
      <seq>gtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124" g_stop="171" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="137" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="189" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="246" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1058" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="571" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1059" i_stop="2404" i_length="1346">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2405" g_stop="2425" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="592" r_length="21" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E255512" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255512" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1058"/>
          <exon e_start="2405" e_stop="2425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAACCAAACGTACAACTAGCATCAAATCTCTTTCTATCTATCTGAAAAGAATATATCACTCGATCGCTTTCGATATCATTGACGGTTATCATGGAATAGATAAAATCTCATGTTCAAATTCTAAAAATGTAAAAAGAGTTTCGATAGAGAATGCTTTCCCATTTAATCGGCGTTACATGGAGCGAAATCGAATGAAATATGAATAAAGAGGAAATTTTTAAAAAAAAATTAACATTAAAAAAAAAAATTTTAAAAAAATTGCTGGCTATGGGGTTCGAACCCATGCGCACTTATGTGCAGAAGATCTTAAGTCTTCCCCCTTAACCTCTCGGGCAAACCAGCTCAATGTTTAATTAAGTCAAAAATAATATATATAATATTTTGGTTTATGAATGTGGTATAAATTGATGTACTAAATAAATTATTACTTTTAAATCCAGACTTGAAATAGATCACGATTTTATTTTATACTACTCTTAGAGAATACGAGTATATAGAAGAAAGAACAGAAAAATAAAAAA</genome_strand>
        <mrna_strand>GTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E369610" ref_strand="-" ref_description="SGN-E369610 [TUS-25-P24]">
      <seq>gtcgccaaggcaattgcaaaaaaaacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaaaatgtccaagaaggcaggttggggtgtaatgaccagtccccccagtggagaaacaaaaaataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcaaagcgtctcgccaagtacaaccagctgttgaggatcgaaaaggaactcggatcaaaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttttgaggttttattagtattttgaattttaaaaaaaaaaaaaaaaagttttttttaggcttggttactgtaaaactttgatatgcaagtttttactatgttctaattaatattttgatggttttggttttttccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="1386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124" g_stop="171" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="137" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="189" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="246" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1085" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="598" r_length="352" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="611"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E369610" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369610" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>GTCGCCAAGGCAATTGCAAAAAAAACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAAATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCCCCCCAG........................................................................................................TGGAGAAACAAAAAATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAAAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAAAGGAACTCGGATCAAAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTTTGAGGTTTTATTAGTATTTTGAATTTTAAAAAAAAAAAAAAAAAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTTTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E259244" ref_strand="-" ref_description="SGN-E259244 [cLEG-43-N7]">
      <seq>aattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggtcactgtaaaactttgatatgcaagtttctactatgttctaattaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135" g_stop="171" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="126" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="178" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="235" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1060" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="562" r_length="327" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1061" i_stop="2408" i_length="1348">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2409" g_stop="2428" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="582" r_length="20" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E259244" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259244" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="135" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1060"/>
          <exon e_start="2409" e_stop="2428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAACCAAACGTACAACTAGCATCAAATCTCTTTCTATCTATCTGAAAAGAATATATCACTCGATCGCTTTCGATATCATTGACGGTTATCATGGAATAGATAAAATCTCATGTTCAAATTCTAAAAATGTAAAAAGAGTTTCGATAGAGAATGCTTTCCCATTTAATCGGCGTTACATGGAGCGAAATCGAATGAAATATGAATAAAGAGGAAATTTTTAAAAAAAAATTAACATTAAAAAAAAAAATTTTAAAAAAATTGCTGGCTATGGGGTTCGAACCCATGCGCACTTATGTGCAGAAGATCTTAAGTCTTCCCCCTTAACCTCTCGGGCAAACCAGCTCAATGTTTAATTAAGTCAAAAATAATATATATAATATTTTGGTTTATGAATGTGGTATAAATTGATGTACTAAATAAATTATTACTTTTAAATCCAGACTTGAAATAGATCACGATTTTATTTTATACTACTCTTAGAGAATACGAGTATATAGAAGAAAGAACAGAAAAATAAAAAATCA</genome_strand>
        <mrna_strand>AATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTCACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E259652" ref_strand="-" ref_description="SGN-E259652 [cLEG-42-E4]">
      <seq>cagagaagacttgcaatgctcttcttctcaaggttaaccaaatcgggtagtgtgaccgagagtattgaagctggtgaagatgtccaagaaggcaggttgggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgttcttgctgtcggtttgtcaacgggacaaatcaagactggaggctccttggcaggtcagaggcggtctcgccaaggtacaaccagctggttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaaggcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaaggttttgttttctgaggttttattaggtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttgggttactggtaaaactttgatatgcaaggtttctactatgttctaattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="1361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="140" g_stop="171" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="124" r_length="92" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="176" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="238" r_length="62" r_score="0.825"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="0.78"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1061" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="573" r_length="335" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E259652" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259652" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="140" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATC-GGTAGTGTGACCGAGAGTATTGAAGCT-GTGAAGATGTCCAAGAAGGCAGGTT-GGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGA-GCTCCTT-GCAGGTCAGA-GC-GTCTCGCCAA-GTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCT-GTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAA-GCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAA-GTTTTGTTTTCTGAGGTTTTATTA-GTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTT-GGTTACT-GTAAAACTTTGATATGCAA-GTTTCTACTATGTTCTAATTAATA</genome_strand>
        <mrna_strand>CAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGGTAGTGTGACCGAGAGTATTGAAGCTGGTGAAGATGTCCAAGAAGGCAGGTTGGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGTTCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGGCTCCTTGGCAGGTCAGAGGCGGTCTCGCCAAGGTACAACCAG.............................................................................................CTGGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGGTTTTGTTTTCTGAGGTTTTATTAGGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGGTTACTGGTAAAACTTTGATATGCAAGGTTTCTACTATGTTCTAATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E250505" ref_strand="-" ref_description="SGN-E250505 [cLEG-18-K1]">
      <seq>agacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="25370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146" g_stop="171" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="115" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="167" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="224" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1085" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="576" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1086" i_stop="2408" i_length="1323">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2409" g_stop="2425" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="593" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E250505" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250505" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="146" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1085"/>
          <exon e_start="2409" e_stop="2425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAACCAAACGTACAACTAGCATCAAATCTCTTTCTATCTATCTGAAAAGAATATATCACTCGATCGCTTTCGATATCATTGACGGTTATCATGGAATAGATAAAATCTCATGTTCAAATTCTAAAAATGTAAAAAGAGTTTCGATAGAGAATGCTTTCCCATTTAATCGGCGTTACATGGAGCGAAATCGAATGAAATATGAATAAAGAGGAAATTTTTAAAAAAAAATTAACATTAAAAAAAAAAATTTTAAAAAAATTGCTGGCTATGGGGTTCGAACCCATGCGCACTTATGTGCAGAAGATCTTAAGTCTTCCCCCTTAACCTCTCGGGCAAACCAGCTCAATGTTTAATTAAGTCAAAAATAATATATATAATATTTTGGTTTATGAATGTGGTATAAATTGATGTACTAAATAAATTATTACTTTTAAATCCAGACTTGAAATAGATCACGATTTTATTTTATACTACTCTTAGAGAATACGAGTATATAGAAGAAAGAACAGAAAAATAAAAAA</genome_strand>
        <mrna_strand>AGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E555897" ref_strand="+" ref_description="SGN-E555897 [cTSD-1-M10]">
      <seq>acttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttgtactatgttctaattaatattttgatggttttggtttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148" g_stop="171" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="113" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="165" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="222" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1096" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="586" r_length="364" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E555897" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAG-AAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTT</genome_strand>
        <mrna_strand>ACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTGTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E213865" ref_strand="-" ref_description="SGN-E213865 [cLEC-76-B6]">
      <seq>caaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="1352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="168" g_stop="171" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="93" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="145" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="202" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="1052" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="521" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E213865" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213865" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="168" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTC</genome_strand>
        <mrna_strand>CAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E259518" ref_strand="-" ref_description="SGN-E259518 [cLEG-42-O10]">
      <seq>aatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttggtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaaggtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcaggttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggtttaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="266" g_stop="346" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="134" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="192" r_length="58" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="734" g_stop="1102" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="561" r_length="369" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E259518" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259518" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="266" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTT-GTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAA-GTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCA-GTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTT</genome_strand>
        <mrna_strand>AATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGG-TTTAAAAAAAAAAAAAAAAAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E337329" ref_strand="+" ref_description="SGN-E337329 [cTOE-7-P8]">
      <seq>atgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="3" stop="1386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="303" g_stop="346" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="96" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="153" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="734" g_stop="1093" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="513" r_length="360" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E337329" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="303" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAAT</genome_strand>
        <mrna_strand>ATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E226367" ref_strand="-" ref_description="SGN-E226367 [cLEL-26-O22]">
      <seq>ggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="18" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="318" g_stop="346" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="81" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="138" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="734" g_stop="1085" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="490" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1086" i_stop="2125" i_length="1040">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2126" g_stop="2151" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="516" r_length="26" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E226367" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226367" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="318" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1085"/>
          <exon e_start="2126" e_stop="2151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAACCAAACGTACAACTAGCATCAAATCTCTTTCTATCTATCTGAAAAGAATATATCACTCGATCGCTTTCGATATCATTGACGGTTATCATGGAATAGATAAAATCTCATGTTCAAATTCTAAAAATGTAAAAAGAGTTTCGATAGAGAATGCTTTCCCATTTAATCGGCGTTACATGGAGCGAAATCGAATGAAATATGAATAAAGAGGAAATTTTTAAAAAAAAATTAACATTAAAAAAAAAAA</genome_strand>
        <mrna_strand>GGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E250457" ref_strand="-" ref_description="SGN-E250457 [cLEG-18-K13]">
      <seq>gttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatcttttgatggttttggttttttcaaacaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="19" stop="1386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="319" g_stop="346" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="80" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="137" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="734" g_stop="1085" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="489" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E250457" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250457" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="319" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>GTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATCTTTTGATGGTTTTGGTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E714405" ref_strand="+" ref_description="SGN-E714405 [FB11BD10]">
      <seq>cctttccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="147" stop="1355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="329" g_stop="346" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.778"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="70" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="127" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="734" g_stop="1055" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="449" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E714405" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="329" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAA</genome_strand>
        <mrna_strand>CCTTTCCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E393743" ref_strand="-" ref_description="SGN-E393743 [TUS-42-B3]">
      <seq>gaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagcccttctaaatttcagcagttccaagtgttgagattgttgagttgttgatttgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttttgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttttactatgttctaattaatattttgatggttttggtttaaaaaaaaggaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="155" stop="1379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="455" g_stop="502" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="105" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="734" g_stop="1075" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="447" r_length="342" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E393743" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393743" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="455" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTG</genome_strand>
        <mrna_strand>GAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTTCTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATTTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTTTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTTTACTATGTTCTAATTAATATTTTGATGGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E257623" ref_strand="-" ref_description="SGN-E257623 [cLEG-45-H6]">
      <seq>cttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgcccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtatttcgaattctgaaaagaaaaaaaaagcgttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="169" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="469" g_stop="502" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="91" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="734" g_stop="1085" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="443" r_length="352" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1086" i_stop="2408" i_length="1323">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2409" g_stop="2428" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="463" r_length="20" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E257623" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257623" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="469" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1085"/>
          <exon e_start="2409" e_stop="2428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAACCAAACGTACAACTAGCATCAAATCTCTTTCTATCTATCTGAAAAGAATATATCACTCGATCGCTTTCGATATCATTGACGGTTATCATGGAATAGATAAAATCTCATGTTCAAATTCTAAAAATGTAAAAAGAGTTTCGATAGAGAATGCTTTCCCATTTAATCGGCGTTACATGGAGCGAAATCGAATGAAATATGAATAAAGAGGAAATTTTTAAAAAAAAATTAACATTAAAAAAAAAAATTTTAAAAAAATTGCTGGCTATGGGGTTCGAACCCATGCGCACTTATGTGCAGAAGATCTTAAGTCTTCCCCCTTAACCTCTCGGGCAAACCAGCTCAATGTTTAATTAAGTCAAAAATAATATATATAATATTTTGGTTTATGAATGTGGTATAAATTGATGTACTAAATAAATTATTACTTTTAAATCCAGACTTGAAATAGATCACGATTTTATTTTATACTACTCTTAGAGAATACGAGTATATAGAAGAAAGAACAGAAAAATAAAAAATCA</genome_strand>
        <mrna_strand>CTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGCCCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTCGAATTCTGAAAAGAAAAAAAAAGCGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E220597" ref_strand="-" ref_description="SGN-E220597 [cLEL-12-F4]">
      <seq>cttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="169" stop="25370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="469" g_stop="502" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="91" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="734" g_stop="1085" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="443" r_length="352" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1086" i_stop="2408" i_length="1323">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2409" g_stop="2425" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="460" r_length="17" r_score="0.824"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E220597" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220597" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="469" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1085"/>
          <exon e_start="2409" e_stop="2425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAACCAAACGTACAACTAGCATCAAATCTCTTTCTATCTATCTGAAAAGAATATATCACTCGATCGCTTTCGATATCATTGACGGTTATCATGGAATAGATAAAATCTCATGTTCAAATTCTAAAAATGTAAAAAGAGTTTCGATAGAGAATGCTTTCCCATTTAATCGGCGTTACATGGAGCGAAATCGAATGAAATATGAATAAAGAGGAAATTTTTAAAAAAAAATTAACATTAAAAAAAAAAATTTTAAAAAAATTGCTGGCTATGGGGTTCGAACCCATGCGCACTTATGTGCAGAAGATCTTAAGTCTTCCCCCTTAACCTCTCGGGCAAACCAGCTCAATGTTTAATTAAGTCAAAAATAATATATATAATATTTTGGTTTATGAATGTGGTATAAATTGATGTACTAAATAAATTATTACTTTTAAATCCAGACTTGAAATAGATCACGATTTTATTTTATACTACTCTTAGAGAATACGAGTATATAGAAGAAAGAACAGAAAAATAAAAAA</genome_strand>
        <mrna_strand>CTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E268754" ref_strand="-" ref_description="SGN-E268754 [cLEM-16-L19]">
      <seq>tcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgcccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="171" stop="25370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="471" g_stop="502" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="89" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="734" g_stop="1058" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="414" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1059" i_stop="1892" i_length="834">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1893" g_stop="1907" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="429" r_length="15" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E268754" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268754" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="471" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1058"/>
          <exon e_start="1893" e_stop="1907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAA</genome_strand>
        <mrna_strand>TCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGCCCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E267512" ref_strand="-" ref_description="SGN-E267512 [cLEI-8-A11]">
      <seq>tgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaataaaaaaaaaaaacaaaccaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="175" stop="94173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="475" g_stop="502" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="85" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="734" g_stop="1060" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="412" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1061" i_stop="2124" i_length="1064">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2125" g_stop="2156" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="444" r_length="32" r_score="0.719"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E267512" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267512" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="475" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1060"/>
          <exon e_start="2125" e_stop="2156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAACCAAACGTACAACTAGCATCAAATCTCTTTCTATCTATCTGAAAAGAATATATCACTCGATCGCTTTCGATATCATTGACGGTTATCATGGAATAGATAAAATCTCATGTTCAAATTCTAAAAATGTAAAAAGAGTTTCGATAGAGAATGCTTTCCCATTTAATCGGCGTTACATGGAGCGAAATCGAATGAAATATGAATAAAGAGGAAATTTTTAAAAAAAAATTAACATTAAAAAAAAAAATTTTA</genome_strand>
        <mrna_strand>TGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACAAACCAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E218649" ref_strand="-" ref_description="SGN-E218649 [cLEL-18-M22]">
      <seq>gatcttgcttcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctcaggttttattagtattttgaattctataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="263" stop="1296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="479" g_stop="502" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="80" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="734" g_stop="997" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="344" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E218649" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218649" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="479" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAG</genome_strand>
        <mrna_strand>GATCTTGCT-TCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTCAGGTTTTATTAGTATTTTGAATTCTATAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E226772" ref_strand="-" ref_description="SGN-E226772 [cLEL-26-O22]">
      <seq>tgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="266" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="487" g_stop="502" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="73" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="734" g_stop="1085" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="425" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1086" i_stop="2125" i_length="1040">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2126" g_stop="2151" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="451" r_length="26" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E226772" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226772" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="487" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="1085"/>
          <exon e_start="2126" e_stop="2151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAACCAAACGTACAACTAGCATCAAATCTCTTTCTATCTATCTGAAAAGAATATATCACTCGATCGCTTTCGATATCATTGACGGTTATCATGGAATAGATAAAATCTCATGTTCAAATTCTAAAAATGTAAAAAGAGTTTCGATAGAGAATGCTTTCCCATTTAATCGGCGTTACATGGAGCGAAATCGAATGAAATATGAATAAAGAGGAAATTTTTAAAAAAAAATTAACATTAAAAAAAAAAA</genome_strand>
        <mrna_strand>TGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E257457" ref_strand="-" ref_description="SGN-E257457 [cLEG-45-H5]">
      <seq>gcctggagctccttccaggtcagagcgtctcgccaagtccacccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgcccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttcctgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttcaaaaaaaaaaaaaaacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="295" stop="1386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="595" g_stop="640" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="0.91"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="734" g_stop="1085" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="398" r_length="352" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="417"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E257457" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257457" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="595" e_stop="640"/>
          <exon e_start="734" e_stop="1085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>GCCTGGAGCTCCTTCCAGGTCAGAGCGTCTCGCCAAGTCCACCCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGCCCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTCCTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E268720" ref_strand="-" ref_description="SGN-E268720 [cLEM-16-L7]">
      <seq>aggtcagagcgtctcgccaagtacaaccagctgttgaggatccaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccttactaaatttcagcagttccaagtgatgagattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgcccttggtgaaataccaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaacttgaaaagcccctttctactatgttctaattaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="311" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="611" g_stop="640" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="734" g_stop="1058" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="354" r_length="324" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1059" i_stop="2404" i_length="1346">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2405" g_stop="2425" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="375" r_length="21" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E268720" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268720" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="611" e_stop="640"/>
          <exon e_start="734" e_stop="1058"/>
          <exon e_start="2405" e_stop="2425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTTGCTATATAACATAAGATGTGCTCTTTTTGGAGAAAACTATTATTTATTAGAAAGGACTTGAATAAAAATAACTATAGTTAATATTACAATGGAAAAAGGGCTTAAAACACTTTAAAGTATTGAAAATGGTACAAAATTATCTTACTCCCTTGTCATACTCCTATCCGCTCTCAAATATCTCTTTGCGTCCAATATTGGTCACTTTTATAACAGATTATCATTTAAATACACGCTTCGATCCAAATAAATTAATTTCACCCGTCCCAAGTAACAATTTTCTAACATTTCACTTAATCTTGCAGCTTTCTTCTCCAATATATTCGCTTACGATCTCTAAAAACACTACCTAAGTACGCACATGTATTATCATAAAAAATCATGCATGTTTTGGTAAATTTCTTATGGTATATTTAGGTAGTAATTTTTTGTTGGGGAAGTAAAGTTGGAAGAGGAAGTAAAATATTGGGAATGAAGGGTGCATTTGTTTTAATCGATGGGGGTAAATGTAATTTTGGGAGGGTGTGGTTAATTTGAGTTGGGTATAGTTAACTCCTATAAAAGTGGTCAGTATTGAATTCAAATATGGATAAAAAGATACTGAGAGCCAATAGGTGGATGAAGGATAATTTCGTATCAATTCAAATAATTTAAGAATATTTTAGATCCTTTTCCGATAATACAATTAACTAAAGTAGAGGAAATAATGTAAAACTTCTATACAATTTTGTGAGCTATCAACCACAAAGAATAGTAGAACCAACTATAAATGATATACATAAAAGTTTATTAGAAAGTAAAATAAAAACCAAACGTACAACTAGCATCAAATCTCTTTCTATCTATCTGAAAAGAATATATCACTCGATCGCTTTCGATATCATTGACGGTTATCATGGAATAGATAAAATCTCATGTTCAAATTCTAAAAATGTAAAAAGAGTTTCGATAGAGAATGCTTTCCCATTTAATCGGCGTTACATGGAGCGAAATCGAATGAAATATGAATAAAGAGGAAATTTTTAAAAAAAAATTAACATTAAAAAAAAAAATTTTAAAAAAATTGCTGGCTATGGGGTTCGAACCCATGCGCACTTATGTGCAGAAGATCTTAAGTCTTCCCCCTTAACCTCTCGGGCAAACCAGCTCAATGTTTAATTAAGTCAAAAATAATATATATAATATTTTGGTTTATGAATGTGGTATAAATTGATGTACTAAATAAATTATTACTTTTAAATCCAGACTTGAAATAGATCACGATTTTATTTTATACTACTCTTAGAGAATACGAGTATATAGAAGAAAGAACAGAAAAATAAAAAA</genome_strand>
        <mrna_strand>AGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCCAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCTTACTAAATTTCAGCAGTTCCAAGTGATGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGCCCTTGGTGAAATACCAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAAC-TTGAAAAGCCCCTTTCTACTATGTTCTAATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E220461" ref_strand="-" ref_description="SGN-E220461 [cLEL-12-F4]">
      <seq>tgtttatgcaggagcaagcttccgcaagcccgttaacccctactaaatttcagcagttccaagtgttgaaattgttgagttgttgatctgccaaaaataaattcctcttagattggtcattttaggattatattatatgaccttggtgaaataacaagcagactcaaaaacaagttttgttttctgaggttttattagtattttgaattctgaaaagaaaaaaaaagagttttttttaggcttggttactgtaaaactttgatatgcaagtttctactatgttctaattaatattttgatggttttggttttttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="469" stop="1386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="769" g_stop="1085" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="334"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E220461" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220461" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="769" e_stop="1085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA</genome_strand>
        <mrna_strand>TGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTAACCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAAATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E257151" ref_strand="+" ref_description="SGN-E257151 [cLEG-46-M1]">
      <seq>tcgagtttttttttttttttttttaaccaaaaccatcaaaatattaattagaacatagtagaaacttgcatatcaaagttttacagtaaccaagcctaaaaaaaactctttttttttcttttcagaattcaaaatactaataaaacctcagaaaacaaaacttggttttgagtctgcttggtatttcaccaagggcatataatataatcctaaaatgaccaatctaagaggaatttatttttgggagaataacaactccacaatctccacacttggaactggtgaaatttaataagggtccacggggttggggaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="25371" stop="483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3082" g_stop="3068" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.733"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3067" i_stop="1088" i_length="1980">
            <donor d_prob="0.477" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1087" g_stop="783" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="320" r_length="305" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E257151" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3082" e_stop="3068"/>
          <exon e_start="1087" e_stop="783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGCATTTTTTTTGCAACTTCTTAGCACTTATAACTTTCTTCTTCTTATTACTATTATTCATCAACATCTCCTTCATCCTTCTGCAAATATCAAAAACCTCCATTGATGAATTAACCTAAAAACTTTTAGTAAAAAAATAATAGCGGAAAAAGACTTGTGAGTATTTTAGTAACTTTTGAGAAAAATGTAAGTTATATATAGTTTTTATTTTCGTAAAATTCGGATCCTAATAAAAGTAGGATTAATTAAAGTAGGATTTAAATAAGGAAACAAACATATAAATATATAGCAATAACAATTTTTTTAAATCCTAATTGAAGTAGATTTAAGTCGGCTAATCAACTTTCCAAATTTCTTCTCAATGGGTTTAGGGTATTTTTTCTTATAAAAAAAAGTAAATAATTATTATAAATATTTGTGTATATATAATTCAATTTATTATATTTAAAAATATATGAAAATAATTAGTATTAGTAGGTATGTTTCATCATAATAAGTACATAAATAATATTAACACATAATTTGATCATGATAAAAATTAAAAACTCTTTTTCCAAAATAGAAGCCTAAAACATATGCCTTATTTTTTTTATAAGCATAGAGTTGACCTCGACTATATTCCCATATTCTTACAATAACTTTTATGCTCTATGATTTTTTATTTTTCTGTTCTTTCTTCTATATACTCGTATTCTCTAAGAGTAGTATAAAATAAAATCGTGATCTATTTCAAGTCTGGATTTAAAAGTAATAATTTATTTAGTACATCAATTTATACCACATTCATAAACCAAAATATTATATATATTATTTTTGACTTAATTAAACATTGAGCTGGTTTGCCCGAGAGGTTAAGGGGGAAGACTTAAGATCTTCTGCACATAAGTGCGCATGGGTTCGAACCCCATAGCCAGCAATTTTTTTAAAATTTTTTTTTTTAATGTTAATTTTTTTTTAAAAATTTCCTCTTTATTCATATTTCATTCGATTTCGCTCCATGTAACGCCGATTAAATGGGAAAGCATTCTCTATCGAAACTCTTTTTACATTTTTAGAATTTGAACATGAGATTTTATCTATTCCATGATAACCGTCAATGATATCGAAAGCGATCGAGTGATATATTCTTTTCAGATAGATAGAAAGAGATTTGATGCTAGTTGTACGTTTGGTTTTTATTTTACTTTCTAATAAACTTTTATGTATATCATTTATAGTTGGTTCTACTATTCTTTGTGGTTGATAGCTCACAAAATTGTATAGAAGTTTTACATTATTTCCTCTACTTTAGTTAATTGTATTATCGGAAAAGGATCTAAAATATTCTTAAATTATTTGAATTGATACGAAATTATCCTTCATCCACCTATTGGCTCTCAGTATCTTTTTATCCATATTTGAATTCAATACTGACCACTTTTATAGGAGTTAACTATACCCAACTCAAATTAACCACACCCTCCCAAAATTACATTTACCCCCATCGATTAAAACAAATGCACCCTTCATTCCCAATATTTTACTTCCTCTTCCAACTTTACTTCCCCAACAAAAAATTACTACCTAAATATACCATAAGAAATTTACCAAAACATGCATGATTTTTTATGATAATACATGTGCGTACTTAGGTAGTGTTTTTAGAGATCGTAAGCGAATATATTGGAGAAGAAAGCTGCAAGATTAAGTGAAATGTTAGAAAATTGTTACTTGGGACGGGTGAAATTAATTTATTTGGATCGAAGCGTGTATTTAAATGATAATCTGTTATAAAAGTGACCAATATTGGACGCAAAGAGATATTTGAGAGCGGATAGGAGTATGACAAGGGAGTAAGATAATTTTGTACCATTTTCAATACTTTAAAGTGTTTTAAGCCCTTTTTCCATTGTAATATTAACTATAGTTATTTTTATTCAAGTCCTTTCTAATAAATAATAGTTTTCTCCAAAAAGAGCACATCTTATGTTATATAGCAAAGTAAAGATTGAGATTTGAAAAAACCAAAACCATCAAAATATTAATTAGAACATAGTAGAAACTTGCATATCAAAGTTTTACAGTAACCAAGCCTAAAAAAAACTCTTTTTTTTTCTTTTCAGAATTCAAAATACTAATAAAACCTCAGAAAACAAAACTTGTTTTTGAGTCTGCTTGTTATTTCACCAAGGTCATATAATATAATCCTAAAATGACCAATCTAAGAGGAATTTATTTTTGGCAGATCAACAACTCAACAATCTCAACACTTGGAACTGCTGAAATTTAGTAGGGCTCAACGGGCTTGCGGAAGCTTG</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTAACCAAAACCATCAAAATATTAATTAGAACATAGTAGAAACTTGCATATCAAAGTTTTACAGTAACCAAGCCTAAAAAAAACTCTTTTTTTTTCTTTTCAGAATTCAAAATACTAATAAAACCTCAGAAAACAAAACTTGGTTTTGAGTCTGCTTGGTATTTCACCAAGGGCATATAATATAATCCTAAAATGACCAATCTAAGAGGAATTTATTTTTGGGAGAATAACAACTCCACAATCTCCACACTTGGAACTGGTGAAATTTAATAAGGGTCCACGGGGTTGGGGAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E371889" ref_strand="-" ref_description="SGN-E371889 [TUS-30-E18]">
      <seq>aacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttttaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttttgaaggtgctctcgaatttcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatttgatgtaaaggaaagatgagttacatttattatgatctatctttaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcagagaatgttattgcctgttggtatcttgttatttgggaaaaaaaaaactaatgttaacattacaatctcaatctatcattaagtatttactactttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="6893" stop="3676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6593" g_stop="6486" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="153" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="244" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="347" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4344" g_stop="3971" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="721" r_length="374" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E371889" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371889" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6593" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="3971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTGAATCATG</genome_strand>
        <mrna_strand>AACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTTTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTTTGAAGGTGCTCTCGAATTTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATTTGATGTAAAGGAAAGATGAGTTACATTTATTATGATCTATCTTTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E275788" ref_strand="-" ref_description="SGN-E275788 [cLEN-18-M4]">
      <seq>tcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcagagaatgttattgcctgttggtatcttgttatttgggaaaaaaaaaactaatgttaacattacaatctcaatctatcattaagtatttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="4752" stop="3686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4452" g_stop="4432" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4344" g_stop="3979" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="387" r_length="366" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E275788" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275788" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4452" e_stop="4432"/>
          <exon e_start="4344" e_stop="3979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTT</genome_strand>
        <mrna_strand>TCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E351142" ref_strand="-" ref_description="SGN-E351142 [cTOS-6-N24]">
      <seq>aaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcagagaatgttattgcctgttggtatcttgttatttgggaaaaaaaaaactaatgttaacattccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="5161" stop="3710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4861" g_stop="4828" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="137" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4344" g_stop="4011" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="471" r_length="334" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="491"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E351142" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351142" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4861" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="4011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACA</genome_strand>
        <mrna_strand>AAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E353687" ref_strand="-" ref_description="SGN-E353687 [cTOS-10-F12]">
      <seq>aaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcagagaatgttattgcctgttggtatcttgttatttgggaaaaaaaaaactaatgttaacattacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="5161" stop="3710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4861" g_stop="4828" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="137" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4344" g_stop="4011" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="471" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="472" polyA_stop="491"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E353687" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353687" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4861" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="4011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACA</genome_strand>
        <mrna_strand>AAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E715865" ref_strand="+" ref_description="SGN-E715865 [FB15BH12]">
      <seq>ctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaatcagagaatgttattgcctgttggtatcttgttatttgggaaaaaaaaaactagtgttggcgttggtggcagacgaaacaaagggatatgcaaaacatggtaactgcggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="6816" stop="3714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6516" g_stop="6486" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="76" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="167" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="270" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4344" g_stop="4025" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="590" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E715865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6516" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="4025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTA</genome_strand>
        <mrna_strand>CTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E745576" ref_strand="+" ref_description="SGN-E745576 [GI|47105878]">
      <seq>gatagtacaccctagctgtctctttcttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgacagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcaccgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttaagacttgttatgttttcaatgagagttttggattgaaccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8914" stop="3770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8615" g_stop="8522" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="165" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="380" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="409" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="448" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="588" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="633" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="724" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="827" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="4344" g_stop="4079" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="1093" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1097" polyA_stop="1114"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E745576" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1093</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8615" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="4079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGTACACCCTAGCAGTCTCTTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGA</genome_strand>
        <mrna_strand>GATAGTACACCCTAGCTGTCTCTTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGACAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACCGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E716887" ref_strand="+" ref_description="SGN-E716887 [FB18BC10]">
      <seq>agaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacgaaaacacctgtcactgataaaaaggcaaaattgacaacacctcacaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttannaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="6909" stop="3815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6609" g_stop="6486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="169" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="260" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="363" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4344" g_stop="4112" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="596" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="611"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E716887" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6609" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="4112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGA</genome_strand>
        <mrna_strand>AGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACGAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCACAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E715556" ref_strand="+" ref_description="SGN-E715556 [FB14CE06]">
      <seq>agaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatcagaagagagcttttttagtcgtttttttccccgtttcgatttggttcatctgatgtaaaggaaagatgagttacatctattatgatctatctctaggtcaatcatctgttttgatgtttannaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="6909" stop="3815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6609" g_stop="6486" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="169" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="260" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="363" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4344" g_stop="4112" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="596" r_length="233" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="612"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E715556" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6609" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="4112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGA</genome_strand>
        <mrna_strand>AGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTANNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E705729" ref_strand="+" ref_description="SGN-E705729 [FA27DH10]">
      <seq>ctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaangtgctctcgaatctcactcgaaagctaaacacagtgctggaaagtaaatagacatggagacatttagtctttgtttggttgttacctatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8856" stop="3935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8556" g_stop="8522" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="106" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="321" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="350" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="389" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="529" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="574" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="665" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="768" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="4344" g_stop="4235" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="769" r_stop="878" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E705729" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8556" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="4235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATC</genome_strand>
        <mrna_strand>CTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAANGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E705645" ref_strand="+" ref_description="SGN-E705645 [FA27DA02]">
      <seq>taaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgccacaggagttttggttctgaaggtgctctcgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8872" stop="4014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8572" g_stop="8522" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="122" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="337" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="366" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="405" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="545" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="590" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="681" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="784" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="4344" g_stop="4314" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="785" r_stop="815" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E705645" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8572" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="4314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCTCGAATCT</genome_strand>
        <mrna_strand>TAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCCACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCTCGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E710902" ref_strand="+" ref_description="SGN-E710902 [FA57BC04]">
      <seq>cctttaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8876" stop="4021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8576" g_stop="8522" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="126" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="341" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="370" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="409" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="549" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="594" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="685" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="788" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="4344" g_stop="4321" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="812" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E710902" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8576" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="4321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCT</genome_strand>
        <mrna_strand>CCTTTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E709053" ref_strand="+" ref_description="SGN-E709053 [FA42CC04]">
      <seq>cgctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaaactgatggcaaaaaaggtggtgtccatgtagcaacaccgcacccttctaagcaggctagtaagactccaaaatcagctggatctcatcactgcaagccgtgcaacaggagttttggttctgaaggtgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8875" stop="4021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8575" g_stop="8522" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="125" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="340" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="369" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="408" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="548" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="593" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="685" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4534" g_stop="4432" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="788" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="4344" g_stop="4321" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="812" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E709053" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8575" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4432"/>
          <exon e_start="4344" e_stop="4321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTC-AAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAGGTACATATATTAATATCTCAACAAATTCAATTTGTTCAAGTAGACGCATTTGGATGTTTGGTGTATTCATGTATTGGTTCCTTGCAGGAGTTTTGGTTCTGAAGGTGCTCT</genome_strand>
        <mrna_strand>CGCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG.......................................................................................GAGTTTTGGTTCTGAAGGTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E335549" ref_strand="+" ref_description="SGN-E335549 [cTOE-2-J5]">
      <seq>tttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcanaaaaggtggtgtccatgtagcaacaccgcacccttctagcangctagtaagactccaaaatagnctggatctcatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8881" stop="4148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8581" g_stop="8522" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="346" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="375" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="414" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="554" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="599" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="690" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4534" g_stop="4448" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="776" r_length="86" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E335549" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8581" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACT</genome_strand>
        <mrna_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCANAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCT-AGCANGCTAGTAAGACTCCAAAATAGNCTGGATCTCATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E321444" ref_strand="+" ref_description="SGN-E321444 [cTOB-23-M8]">
      <seq>tttcttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaagaaagcagaaagtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgatagaaaggcaagattgacaacaccctcaaaaactgatggcaagaaaaggtggtgtccatgtagcaacaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8893" stop="4200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8593" g_stop="8522" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="143" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="358" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="387" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="426" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="566" r_length="140" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="611" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="702" r_length="91" r_score="0.945"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4534" g_stop="4500" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="738" r_length="36" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E321444" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8593" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAA-AAAAGGTGGTGTCCATGTAGCAACACCG</genome_strand>
        <mrna_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAAGAAAGCAGAAAGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAGAAAGGCAAGATTGACAACACCCTCAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAGAAAAGGTGGTGTCCATGTAGCAACACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E371890" ref_strand="+" ref_description="SGN-E371890 [TUS-30-E18]">
      <seq>tcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctgcaaaaaagaggaaggcagattcagctacaaaaacacctgtcactgataaaaaggcaaaattgacaacacctcaaaaaactgatggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8877" stop="4526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8577" g_stop="8522" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="127" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="342" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="371" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="410" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="550" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="595" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4918" g_stop="4828" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="686" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4534" g_stop="4527" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="694" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E371890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8577" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4828"/>
          <exon e_start="4534" e_stop="4527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTGGTTTGTCTTGTCACTCTAATTTTTTATTTTTACTTCTTCTGGTCCATATTATTCCAAGAAACTAAGAAGGTTTTGACTAATAGACCCTTGTGGTCGGCCCTTCCCCTTCCCCTGCGCATAGTGTGGCAGTTTAGTGCACCGGGCTGTCCTTTTATAGTTATTGTACCAGGAAAACTAAAATTGCTGAGTTTTTTTTTTCTGAAAGATGTAACTGATAAAATTAATTTGCTGGTACTGGTGGTCAAATGGCTCAATTTATTCAGTATCTTTTTCTACTTTTGTGGTTGATTTAGATGGCAAA</genome_strand>
        <mrna_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG.....................................................................................................................................................................................................................................................................................................ATGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E334934" ref_strand="+" ref_description="SGN-E334934 [cTOE-9-I19]">
      <seq>tgtcagtgaatattgatggcaagaaaaccttgttcttgggacacctcaactcagagaaggtgcctcaaccagcaatttgaccctggtttttgataaagacctttgaattatctcacaacttgaaaagtggcagtgtctaccttttttggataccaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagtgaggaggagacaccaaagaaggctgagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="7458" stop="4707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7158" g_stop="6990" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="206" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="245" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="385" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5055" g_stop="5011" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="430" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92">
            <donor d_prob="0.913" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4918" g_stop="4909" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="440" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E334934" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7158" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5011"/>
          <exon e_start="4918" e_stop="4909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAGTGAATATTGATGGCAAG-AAA-CTTGTTCTTGGGACA-CTCAACTCAGAGAAGGTGCCTCAA-CAGCAATTTGA-CCTGGTTTTTGATAAAGA-CTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTA-CTTTTTTGGATA-CAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAGGTAGTGATATTTCTGGGGTGGATAATTTATTGTTTTGCTGAGTATTTTGTTGTATGATTTATTGTTATTATGTGGTTTCATCTCTATTTTAGGCTGAGCCTG</genome_strand>
        <mrna_strand>TGTCAGTGAATATTGATGGCAAGAAAACCTTGTTCTTGGGACACCTCAACTCAGAGAAGGTGCCTCAACCAGCAATTTGACCCTGGTTTTTGATAAAGACCTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACCTTTTTTGGATACCAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG............................................................................................GCTGAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E326158" ref_strand="+" ref_description="SGN-E326158 [cTOC-16-E7]">
      <seq>atttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaagacgactctgatgagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8882" stop="4732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8582" g_stop="8522" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="132" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="347" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="376" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="415" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="555" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5055" g_stop="5032" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="579" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E326158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8582" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGT</genome_strand>
        <mrna_strand>ATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E328011" ref_strand="+" ref_description="SGN-E328011 [cTOC-22-I11]">
      <seq>agctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaatatccttttttatttgtctgttaacttttatttcttataggcatttatttttcgttcgatgtaaaattttgtgtatttgtttcattgactaaacttctgtggttcacggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgangattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaggatgaacacgactctgatgagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="7660" stop="4732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="88" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7204" g_stop="6853" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="440" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="479" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="619" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5055" g_stop="5032" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="643" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E328011" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAGT</genome_strand>
        <mrna_strand>GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACTAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGANGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACACGACTCTGATGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E315526" ref_strand="+" ref_description="SGN-E315526 [cTOA-22-A19]">
      <seq>tttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttgggagaagatgaagacgactctgatgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8881" stop="4733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8581" g_stop="8522" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="346" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="375" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="414" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6486" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="554" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5055" g_stop="5033" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="577" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E315526" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8581" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6486"/>
          <exon e_start="5055" e_stop="5033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAGGTACAATTTTTTTTATATCTTCATGGTGTTTAAATTATTGTCATGGTCTTTTGTAGTATTAGTTAGGGAAACCAATACAAGGACAAAAAATGGGTGCCACTTGTTTAAGCTTGTTTGATTATTTAACTGAAATGTTAAAATGCCCTACTAAATTGTGGTGTCCGGACAACATTTTTTAAAAATCAAATGTACATTATATTTATCTTCAACATGCCATTGCAAGGACTTCGAGAGAGTTGTACTATGTAATCTCTTCTCTTAAACAAAAAAGTAGTGGAAGGAAAGCTTATCACTCACTAATATGTAAGGAGATGCGGTAAAAACGTGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCCAAAAATAAATCTATGACTATGTAAGGAGATGCGGTAAAAACATGCTTTGGCAAGAACACCTACTAGACAAAGTAATGTGTATGAGGTCCATCCTATACAAGAGGTGGGGTACCTCCAAAAATAAATCTATGACTATCCACTTGTGGTAGGAGGTCATTCTTCATGGAGGCTGAAAGATATTCAGGTTGTTCTTTTTGAATTGCGCATGGTTGGTGGACTCCATCTATCAACTTTCACGAGGCCTTTAATAACTCCCTTGGTTTTAATTGTTTGTCTTACTTTCCTTTCTGGTTCTTTTAAAAGGTCTTTTTCTTTTTTCGACGACCTTTTAATATCAACTTTCCACCTGACATTTTTAAGACCTTAAGATCGAAAGTCATTTGGGTACATTATATATATCTTTAGTTTTAGAGCACTAGATTGATAAGTCTCCTTTACTTTCCTAAACTTTGTGCCAAGTCATAATTAGACAAACTAATTGAAACCGAGGGAAGTAAAACATTGAGATTGATATCATAAGCATTTTTTTGGGGAAGAAAATGGCGGCTACTTGGAATGGCTAAGAGATGTTGGCTGCTTGGTTTTCTTCACCAAAAACAGAGCTTCAATAATTTTACTTCATTCTTAGCCTTCTTCAATTCTTATATTTCATTCATACTTCTCTGAGGTATCATATTGTTTCAATTGACAGTAGAGCAGTTTAGTCATTTTCAACTTGGACCTATTGACATCTTTTAGAAATACACATCTGATTCCAGCTTAATGCTAGTGCCTCTGCTAGATTGGGCTGGAGGCTGTGTTGTGGTATTTGGGGCTGTTTAAAAGTGTTTTTGTGGTTTTGAATTATATTGAATGACTGAACAGTTTTCATCTCTTTTAGCTCAGAAGCATACTCTACTTAATGATGCATTACAAAACTGATATGCTATGCAGTTGCTTTTATCTAATTTGTGGCTATGCTTTTCTCTGTGTAATTTATTGAGTTATACTTCTGATGTATTTACTGTATAAATTATATTTGTATATTCAGGATGAAGACGACTCTGATGAGAG</genome_strand>
        <mrna_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGACGACTCTGATGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E306667" ref_strand="+" ref_description="SGN-E306667 [cLEY-19-C9]">
      <seq>tccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8885" stop="6189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8585" g_stop="8522" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="135" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="350" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="379" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="418" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6489" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="555" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E306667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8585" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGA</genome_strand>
        <mrna_strand>TCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E333123" ref_strand="+" ref_description="SGN-E333123 [cTOD-19-L17]">
      <seq>tttcttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8893" stop="6190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8593" g_stop="8522" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="143" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="358" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="387" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="426" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6490" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="562" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E333123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8593" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</genome_strand>
        <mrna_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E339551" ref_strand="+" ref_description="SGN-E339551 [cTOE-16-I2]">
      <seq>tttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8881" stop="6190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8581" g_stop="8522" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="346" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="375" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="414" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6490" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="550" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E339551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8581" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</genome_strand>
        <mrna_strand>TTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E324313" ref_strand="+" ref_description="SGN-E324313 [cTOC-4-N12]">
      <seq>tcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcatgaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgatggttctgacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8877" stop="6190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8577" g_stop="8522" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="127" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="342" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="371" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="410" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6490" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="546" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E324313" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8577" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</genome_strand>
        <mrna_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCATGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E324799" ref_strand="+" ref_description="SGN-E324799 [cTOC-8-M20]">
      <seq>tccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtggagcctactaaagatgatgaagatgagagctctgatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8885" stop="6204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8585" g_stop="8522" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="135" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="350" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="379" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="418" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6504" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="540" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E324799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8585" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGAT</genome_strand>
        <mrna_strand>TCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E337042" ref_strand="+" ref_description="SGN-E337042 [cTOE-20-N13]">
      <seq>cttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgcttcaggaaagcagaaggtgaggattgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8890" stop="6245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8590" g_stop="8522" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="140" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="355" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="384" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="423" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6545" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="504" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E337042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8590" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGG</genome_strand>
        <mrna_strand>CTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E313816" ref_strand="+" ref_description="SGN-E313816 [cTOA-17-M15]">
      <seq>tctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaaagaggctgggaagtctaacgctggaaaggattctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8879" stop="6273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8579" g_stop="8522" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="129" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="344" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="373" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="412" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6573" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="465" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E313816" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8579" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCT</genome_strand>
        <mrna_strand>TCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E315403" ref_strand="+" ref_description="SGN-E315403 [cTOA-22-O3]">
      <seq>tttcttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaacagtggtaaacctgaccctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8893" stop="6429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8593" g_stop="8522" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="143" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="358" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="387" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6732" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="426" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6625" g_stop="6610" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="442" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E315403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8593" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6732"/>
          <exon e_start="6625" e_stop="6610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTGGTATGGAAAATGCTTTTTTTTTTTACCAAGATATTATGTCAATTTAATAGATGGTTATACATCTTAATTGGCTAATGTTATTGTCTACTTTGTTAACTGACTTCAGGTAAACCTGACCCTAA</genome_strand>
        <mrna_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG..........................................................................................................GTAAACCTGACCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E310009" ref_strand="+" ref_description="SGN-E310009 [cTOA-4-I19]">
      <seq>tctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcataaagtgcctgcttgtcagtgaatattgatggcaagaaacttgatcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggcttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaagcaactaacccgtttgatgaggaagaggatgacgaagatgattatgatgattctgatgaggatatccccctcactcttgccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8874" stop="6435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8574" g_stop="8522" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="124" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="339" r_length="215" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="368" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6735" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="404" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E310009" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8574" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTCTTGCCAACA</genome_strand>
        <mrna_strand>TCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCATAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGATCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGCTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAAGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAGATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E283068" ref_strand="+" ref_description="SGN-E283068 [cLER-17-H14]">
      <seq>tcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatgaggaagaggatgacgaaaatgattatgatgattctgatgaggatatccccctcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8877" stop="6444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8577" g_stop="8522" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="127" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6990" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="342" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6881" g_stop="6853" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="371" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6770" g_stop="6744" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="398" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E283068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8577" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6990"/>
          <exon e_start="6881" e_stop="6853"/>
          <exon e_start="6770" e_stop="6744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATGGTAAATGCACATTTTCTTTTGTTTGGACATCCATACTGTTCTGTGATTAGTTATTGATCGTCTGGTGTTCTTGTGTTTTCAGATTCTGATGAGGATATCCCCCTCACTC</genome_strand>
        <mrna_strand>TCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA............................................................................................................GGAAGAGGATGACGAAAATGATTATGATG..................................................................................ATTCTGATGAGGATATCCCCCTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E315641" ref_strand="+" ref_description="SGN-E315641 [cTOA-22-N9]">
      <seq>tttcttcctccatttctcctctaaaaccctaatttctctctaaaaccctaaaagcagctatggagttttggggtgctgaggtgaaaagtggagagccattaactgtacagcctggagatgggatggttttgcatctttcacaggcatctctaggtgagttgaagaaggataaatcagaaagtgcctgcttgtcagtgaatattgatggcaagaaacttgttcttgggacactcaactcagagaaggtgcctcaacagcaatttgacctggtttttgataaagactttgaattatctcacaacttgaaaagtggcagtgtctacttttttggatacaaggcaactaacccgtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="8893" stop="6691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8593" g_stop="8522" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162">
            <donor d_prob="0.853" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7359" g_stop="7289" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="143" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7204" g_stop="6991" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="357" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E315641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8593" e_stop="8522"/>
          <exon e_start="7359" e_stop="7289"/>
          <exon e_start="7204" e_stop="6991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGGGTAAATCTCTTTACATACACTAATTCAATTTGATATGTTTGTATTTGATTGTTTCAATTTCAATTGCTGTTTCATGTATTTGTGTTCGTTTTGCTGTTTATGTTTTATGTTTTTTTTTTTACATTTTGATTTGTATGCATGCGTTTGTTTTTGCTCAAACATCAGTGAAATCTTATTATTGTGTGTGATTTTGGTACTAGAAATGTTGAGGTTGGTGCAGATATATGCAATTTGTATTTTCTAATTTTGATTGGCTTGCTTGATTAAAAGAGTTTTCCTGCGTTGGACAGCTACTGTGTCCTTCAATTTCTATTGCTCTACCATGTGTTTATGTTTGTTTTGATGTTGATTTTGTGTGTTTTTTTTTTTGCGTTTTGGTTTGTATGCGTGTCTTTGTTTTTGCTCACATATCAGTAAAATCTTATTACTTTATCATGAAATAATAATGTTGTGTCTGATTTGTGTACTAGAAATGTTGAGGCTAGCATTTTGAGTATTCTATATTTGATTGTTTTGATACCAATTGCTCTTTAATGTATATATGTATGTATGTTTTTCTGTTAATGTTTTATGTGATTTTTTTAATGTGTTTTGCCCAAGCATCAATCAAATTTATTACATTATCATAAAAATGTTTTGTGTGAGATCTTATTAGCAGAAATGGTTGAGGTTTTAGATTATTTTAGCTGGCTACAGTGTATTTTTCCCTAGAGTGGAAATATTTTATTGTATTATCTCAAAAGTTATTAGATTTTAATTATAAGCCTCAAGTTAGTATCTTTCATACTTGAACATAGATTGTTTTAGCAGGTTATGTTTGTTTTCGGGGAAGAAATGATGAGGTATAGCCTAAGGTTAGGGGCCTTGGTTGGGGGTTTTGAGTCAAGAAGGGCAAAGTGGGAAAAAGTTGTTTGTCTCTTTGTAGTTTTTTTTGACTTTTGAGAAGGCAGGGGTGGACGTTGTGGTGAGGTTTACCATAAAAAGGATGAAGTTTCTTTTCACAACATATCTGTTTGGGTTTATGCGTCCTTCATTCAAAGTTCAAATTTTCTCTTATTTGTGTTCTGTTTCTGGTGCACTTTTATTGAACATGCTTAATATGTTACTTGTATTGCTATTCCTGAACTCTCATTTTCTGAATTGAATATTTATTTGTGCATAGGTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAGGTTTTATAATTTGCTACAACTTGATAAGCTTAGTTATTCGTAGTTGTCATTAGCTAATTCTCATTACTATGTTGTTATCTGCAGGCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATG</genome_strand>
        <mrna_strand>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG....................................................................................GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E340989" ref_strand="+" ref_description="SGN-E340989 [cTOF-5-J11]">
      <seq>tcaataatctcttcatttctctcactccatcatggacttcggtgtctatgttgatcggattttttctctatttagctaccgttggatctattctacccggaaaacttgttcctggggcgactttatctgatggaactcgactccattatcgttgcaatggtttattatcacttctgttgttggttttgcttcttggagttgggtcgcagatgaatcttgtttcacctactgctatagcagatagaggacttgagcttttgtccacaacacttatctttagtgttcttgtgacattgatgctttatttggttggcctgaactcacgtgcaaagagttcatcactgaaacctcatgtctcaggaaatctaatccatgactggtggtttgggatacaactgaatcctgaattcatgggcattgatctcaaatttttctttgttagagctggtatgatgggatggttacttatcaatctttcagttcttgcaaaatgtgttatagaggctaaattgagccaatcaatgattctctaccagctattttgtgggctctacatccttgactacttcttctatgaagagttcatgacctccacatgggatataatagcagagaggttgggctacatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="11641" stop="17248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11941" g_stop="11981" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11982" i_stop="12079" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12080" g_stop="12197" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="159" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12198" i_stop="13078" i_length="881">
            <donor d_prob="0.507" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13079" g_stop="13149" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="230" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13150" i_stop="13976" i_length="827">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13977" g_stop="14033" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="287" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14034" i_stop="14179" i_length="146">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14180" g_stop="14271" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="379" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14272" i_stop="15041" i_length="770">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15042" g_stop="15089" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="427" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15090" i_stop="15594" i_length="505">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15595" g_stop="15715" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="548" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15716" i_stop="15804" i_length="89">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15805" g_stop="15851" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="595" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15852" i_stop="16911" i_length="1060">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16912" g_stop="16948" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="632" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E340989" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11941" e_stop="11981"/>
          <exon e_start="12080" e_stop="12197"/>
          <exon e_start="13079" e_stop="13149"/>
          <exon e_start="13977" e_stop="14033"/>
          <exon e_start="14180" e_stop="14271"/>
          <exon e_start="15042" e_stop="15089"/>
          <exon e_start="15595" e_stop="15715"/>
          <exon e_start="15805" e_stop="15851"/>
          <exon e_start="16912" e_stop="16948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCGGTCAGTATTTTTTCTTCTCTATTTGACTGTACATGTATCTATACAATCTGTGTGATTTTTTTTTTTTGCTGATTTTGTTCTTGTTTTGGTGAATATAGGTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATGGTAATGTGAATTGGTGTGTATTTTGATGAGTGGAGTCAGGATTTGAAGTTTATGGGTTTTGAGCTTGTTATCGAAAGCATTTAGTTAATGGGGGTTCGAATAATTTAAGCAAAAACTATTGAGTTCGTCTGGACTCTTGGTTAATGTTGTAGTTTTGTCTAGGGGATTTGAAGTTTATGGATTGTGAACTTTTTGTGGAACCCGTTCAGCTAAGCTATTGAGTTTGTTTGGACTCCTAGGGAATATTGTAGTTTTTCCTGGTGGGATTTGAGGTATATGGATTCTGAACTTGTTATCGAACCTGCTTAGTTAGTGGGTTGTTACTTGAATATTTATGCTTATCTAATGGATTTCCTAATACAATTATAAGGTTTAAGCAAAAGTTATTGGGTTTGTTTTAACTCCTATTTAATAGTGTAGTTTTGCTTGGACCCTTCGGGGTGGCTCAGTGGTTTGAGCTTGGGACTTCCATGTTGGACGTCTCAAGTTCGAAATCCTTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGATCGAGAAAGCCTGGTGCGGGTTACGTCTCCTATGTGTTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCTGTGCGCACCCTTTAAGGGTAGGTTTCCCTTGTCATAAAAAAAATGTAGTTTTGCTTGGTAGGACTTTGAAGTTGATGGATTCTGAACTTCTTGATGAATATATAGCTCGTTTTTGGTAATGTCTTTGCGATTAATATATAAATGCTTATTTAATAGAGTCTGTGCAAAAACTATTGGGTTGGTTCAAACCCGTACTTAATACTGTAGCTCTGCCCTTGTATATTTTCATGTTTCTCCATGCGGGTTGAGCTTAGATTATTTGTTGTTGCTATTTCAGGTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACTGTGAGTGTGGAATATTTCTTTTGTAGCAAAGGATGTACTTTGGGTTCATTTGCATTCCCTGTTTATTAAGTTTGTTTGCACAAGTATTGCTTGTAAAACCTTCTTATGCGGATGAGCGAGGAACAATTTCTTGCTACACTTCGTGTAGAAGTGATGAGAGTGAGGATTTGTACTCATTGTTCCCAAGAGTCTCGTCTCCGGTGGAACAAATATTCTGTTGTTACTTTCTTTTCCTTGCATGGATGGTGAGATTGAGAAGCTGCATAATTTCACGTGAATTTATTCTTCCTTTTCATATCATTAAATTTAGGAACCAGGTTGTCATTTCAGTGAAAAAGAAATAATTGTGATATTATATGGCTTTCTCATTTCATACCAAAACCTTCAACAGAATTGGTGGTATGATGTCCAACTGCTGTAGTACCTTTCTGTTGTTTTTCCTCCTGCTTTTTTGATGACAATGTACTGTTAGCTTTTGTTCTTTTGTTATCTTTCTATTGTTGTCAATCTGATTTATCTTCATCGTCCCTGGAGAATTACTTGGTTAAGTACAAAACAAATTGTCAATCTGTTCATCTTCAATATCCCTATAGAATAACTTGGTGAAGTACAAAAACTGAAATAGAAGGACAAATTCTGCTGTTTACATGAGTGTACAAACTGGTTACTTAAAAGAACTTCACTTGGATCCAAAATTGCTCACAATGCTGCATCTTCAAATGATGCTGAAAACATGTGAAGGTCTAGAGTGTTGTATGTTTGGACAGGTTTTCTGTTTTTGGTATACTCATAAAGAGATGAAATCACCTATTCCTAATGCATTGCAGGCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTTGTAAGTGAAGAATGTCATACCATAAGAAAGTAATTTATTCTTGATTATGCTTTTATTGACACAAACTTTCTTGTTCTGCAAAAGTTTCTAGCAAGTTAGAAGTTTCATTCTGGTATCTTAATTGTGAATGGCTGAATGATATTTAGGTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGACTGGTAAGTCAATTGACTCTATGCTGTCGTTTATATTCTGAAAAGTTCTTAACACTAATAAAATGGTAATGTCATTCTTTATTGAACTGTCTTCCATCCATCCTTTGATCTATCTGTGTATTTATAAGACAGTTTGTGAATTGTTGTGAAGTTACCATTCAACATAAGATTTTTATTACTATTAAATAGTAAGAGCAGGAGTGAATAATTTTAATTTTCTCAATTAGTACCGGCATTTTGGCCTTTACCCAAGATATACTTAGATAACCATAGAATCGAGAGTTCTAATATATCTGTAATAATATATGACTATTAACAGTCATTAATTTTCTCACTTGACTCTGAGTGCACCTTAACAACCGGTAGTTCATTTTTCGGAAAAAGAAAAAGGAGAAGAATAATTTAGCTGTGGAAATTCATTGTTTTTCAGCTTTCATTAAAAAAGAGTAGGTTGATCTAGGTTTGACACATGACAACGAAAGTTTGTCGTTGAAGAGAACACCTCAGTATTATGAATCCTCAGCTCACTGCTGGAAAGCTTCTGCAATAGAAATCAGGGTAACATGATTTTGGCTATTATTCGACATATATAGGTAGTGATGGTCAAACACAGTACGAATATGGTTAAATTAAGCCGACTGTAGACTGATAACATCTTGTGTTTTCACCACATTGGAGCAAGATATTTATTTTGTTCTCTACATTAAGATTCTGTTGATTTTATTGTAATGAATACTCTCCTAATCTTTCTTCTATCCTATTTCCTTGACTAGGTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAAGTATGTACTCATATCTCAGACCTTGTCTTTCACCATTGTTACAAGTGAACATTGAGAATTCAAAGTTTTCATCAGGCTATAATTTGATTATTTAGTTTATTTTGTTCGATATGTCCGGTAGTAACTTTGCTTAATCCTTTTCATGTTAATGACCAATCCATAAGCACTCAGCAGTTCCCACCAATAGTGAATTGTATATTTTGTAACCTAATTTAGTTTAGCTCTAAAAATGCTTTCTTCTGCTACCTGAAGGAAGAAAATATAGAGAATCCTTAATTTGTTTGGAGTGAACTATTGATGTTTGGCATGAAAAACTTACATGTTTTTGATGAACCAGAACTCATTTTCTGTCAAACTCCAAGCATAGTTGAATTCCTAGTCGAAGAGATTTTGAGAGGCCAGAATAGTTATTTTTGTTGTAATGAACTAATGACTCTCAGCTTCAATCAAGGCTATTTGGTTATTTCTTTTGACTTCTCTGCTTATGATGAATTTTCTGCTGTAGATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGGGTAAGTCGCTGGCTGTACACTTCCAAGTATACCTTCTTGAGTATTTGCTAGTGATTTTTAAAACTTCTTTTATATGTGTTTAATTGCAGCTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCACGTAAGTTGGCGGCTTCTTCTCCGTTTAACTTTTTTAAGATTGAAAAGTTGTTGTGAAGCAAGAACTGGTGTTTCTCTTCTATCCCTTCTTTAATTTATGTCAGCTGTCCAGAATTTTATCTCTCTTTCACTAGCAGTTTCTTCATCTTTATTTGTTGTGTTGTTATTATGCTTTGATCTAAAATTCAAAATAAATCATCCATATGACAAGAATACCACATTGTACGCAACAAAATTAGAAGAGGGTAGGAAAAGGTTTAGGTGTTTAGCCATGAGAAGCATTAGCTTGGGAAGGATAATATGGTTTCTGGTCATTTTCGTGCTTTAATAAGGTAATGCTGGAAGCTGTATAATTAAAGGATTATGAGGTTTGCCGACTGGACTTGTTTGGGACTGAGGTGTTGTTGTTTATGAGGTAGCTGGGTTTGGTCCCTGGTGTCATGGTCAGAGAATCAACAACTGGAAGGAAATGGAGGGAGTTAGGGCAGCATAGGTTGTTTTGCATGGTCTAGGGGTGGTTGATTAGTAGCCTGGTCACAAGGGTTAGAATTAAAACAAGAAACTTCTTCCGAGTTCTATACATCCAATAACATGTCAGTTGAAACGAAGCAACTCTGAAGAACCTCTAGTGATGCTAACATTTGAACCCTACGGAACACAACTACTCCCAGAAACCTTGGAAGGGTCTGGCTGGGGCACCACTATTCTCATGTTAGGATTGTTTTGGGGGTGGGTGGGTGTTGAATTATGATATGATTGTTTTTTAGCTATAGTGAGTGGTTTTAATTTGTACGTAGCATGTACCAATTCAATATTATTGGGAGCATGAATTTTTATTGAAAATTTGAATTTATAAGGTTTGACCTTTCTAAGCCCTAAAATGTCTCATTATTGGCTGAATGATATGTTTGTTTTGTTAATTGTTAACCAGTGATTATATATTGATGGTGGTCACCTCATCTATTCCTCTTACCTTTCCCTTTCTTTGTAGTCTTAATATTATCTTCCTCCATTAAGTTTCTCAGCTACGGTTGTGTAAAGTCTTGTTTCTCCATTCTCAGATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTG</genome_strand>
        <mrna_strand>TCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCG..................................................................................................GTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTT..................................................................................................................................................GTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTATAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG.........................................................................................CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E245579" ref_strand="+" ref_description="SGN-E245579 [cLEF-43-K11]">
      <seq>acaactgaatcctgaattcatgggcattgatctcaaagttttctttgttagagctggtatgatgggatggttacttatcaatctttcagttcttgcaaaatgtgttatagaggctaaattgagccaatcaatgattctctaccagctattttgtgggctctacatccttgactacttcttctatgaagagttcatgacctccacatgggatataatagcagagaggttgggctacatgctggtttttggtgatctagtctttataccgttcaccttcagtattcagggttggtggcttttgagtaacaaagtggagctaacaacagcagcaataattgccaattgcctcgtctttcttattgggtactcggtgttcagaggagccaataagcagaagcatgtatttaaaaaggatcccaaggcacccatatggggtagtcctccaaaagttattgggggaaagttgcttgcttctggctattggggcattgcacggcactgtaattacctcggggatttgttgctggcatcgtcttttagtttaccttgtggtataagctctgtggttccatacttttaccccatatatcttctcattctactcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="14754" stop="19844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15054" g_stop="15089" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15090" i_stop="15594" i_length="505">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.760" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15595" g_stop="15715" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="157" r_length="121" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15716" i_stop="15804" i_length="89">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15805" g_stop="15851" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="204" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15852" i_stop="16911" i_length="1060">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16912" g_stop="16993" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="286" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18716" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="363" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18936" g_stop="19055" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="483" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19333" g_stop="19407" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="558" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.001" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19495" g_stop="19544" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="608" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E245579" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15054" e_stop="15089"/>
          <exon e_start="15595" e_stop="15715"/>
          <exon e_start="15805" e_stop="15851"/>
          <exon e_start="16912" e_stop="16993"/>
          <exon e_start="18716" e_stop="18792"/>
          <exon e_start="18936" e_stop="19055"/>
          <exon e_start="19333" e_stop="19407"/>
          <exon e_start="19495" e_stop="19544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTGAATCCTGAATTCATGGGCATTGATCTCAAGTATGTACTCATATCTCAGACCTTGTCTTTCACCATTGTTACAAGTGAACATTGAGAATTCAAAGTTTTCATCAGGCTATAATTTGATTATTTAGTTTATTTTGTTCGATATGTCCGGTAGTAACTTTGCTTAATCCTTTTCATGTTAATGACCAATCCATAAGCACTCAGCAGTTCCCACCAATAGTGAATTGTATATTTTGTAACCTAATTTAGTTTAGCTCTAAAAATGCTTTCTTCTGCTACCTGAAGGAAGAAAATATAGAGAATCCTTAATTTGTTTGGAGTGAACTATTGATGTTTGGCATGAAAAACTTACATGTTTTTGATGAACCAGAACTCATTTTCTGTCAAACTCCAAGCATAGTTGAATTCCTAGTCGAAGAGATTTTGAGAGGCCAGAATAGTTATTTTTGTTGTAATGAACTAATGACTCTCAGCTTCAATCAAGGCTATTTGGTTATTTCTTTTGACTTCTCTGCTTATGATGAATTTTCTGCTGTAGATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGGGTAAGTCGCTGGCTGTACACTTCCAAGTATACCTTCTTGAGTATTTGCTAGTGATTTTTAAAACTTCTTTTATATGTGTTTAATTGCAGCTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCACGTAAGTTGGCGGCTTCTTCTCCGTTTAACTTTTTTAAGATTGAAAAGTTGTTGTGAAGCAAGAACTGGTGTTTCTCTTCTATCCCTTCTTTAATTTATGTCAGCTGTCCAGAATTTTATCTCTCTTTCACTAGCAGTTTCTTCATCTTTATTTGTTGTGTTGTTATTATGCTTTGATCTAAAATTCAAAATAAATCATCCATATGACAAGAATACCACATTGTACGCAACAAAATTAGAAGAGGGTAGGAAAAGGTTTAGGTGTTTAGCCATGAGAAGCATTAGCTTGGGAAGGATAATATGGTTTCTGGTCATTTTCGTGCTTTAATAAGGTAATGCTGGAAGCTGTATAATTAAAGGATTATGAGGTTTGCCGACTGGACTTGTTTGGGACTGAGGTGTTGTTGTTTATGAGGTAGCTGGGTTTGGTCCCTGGTGTCATGGTCAGAGAATCAACAACTGGAAGGAAATGGAGGGAGTTAGGGCAGCATAGGTTGTTTTGCATGGTCTAGGGGTGGTTGATTAGTAGCCTGGTCACAAGGGTTAGAATTAAAACAAGAAACTTCTTCCGAGTTCTATACATCCAATAACATGTCAGTTGAAACGAAGCAACTCTGAAGAACCTCTAGTGATGCTAACATTTGAACCCTACGGAACACAACTACTCCCAGAAACCTTGGAAGGGTCTGGCTGGGGCACCACTATTCTCATGTTAGGATTGTTTTGGGGGTGGGTGGGTGTTGAATTATGATATGATTGTTTTTTAGCTATAGTGAGTGGTTTTAATTTGTACGTAGCATGTACCAATTCAATATTATTGGGAGCATGAATTTTTATTGAAAATTTGAATTTATAAGGTTTGACCTTTCTAAGCCCTAAAATGTCTCATTATTGGCTGAATGATATGTTTGTTTTGTTAATTGTTAACCAGTGATTATATATTGATGGTGGTCACCTCATCTATTCCTCTTACCTTTCCCTTTCTTTGTAGTCTTAATATTATCTTCCTCCATTAAGTTTCTCAGCTACGGTTGTGTAAAGTCTTGTTTCTCCATTCTCAGATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAGGCATGTATTCACAACCAATTCTTATTGCCACATACAAATCTATCCTTGTTTATATATGAATTATGGCACCTTTGATATCAGTATAATACAAATGTATATGACACCATTGGTATTAGTATAACACAAATGTATAGCTTGTAAATGAATTCTCTTCAAAAGCATAGTTTTGAACTATCACTTCTTGTGTCCTTCATCTCCTACTATATGTAATGATGCCTAGTTTCGTGGATACCAACACATTTTTTTTTTGAAATGGTAAAGGTTAGGCCATGCAACATATCCTTTTCCTGGAATTTATACCTCGCCTCATGCTACGATATTTTAATGGATATACTACTTGTTTGAATACCCAGAAAACTTTTTGTTTGTGTTTAGTTTTAAAGAATTTGAATCAAGGGCCTGTTAAAGAAGAGAAATGGAAAAGGAGAAACACATGTGTTTGTTTATCTTTTATTTTCTGAGGAAACCATGTATGGAAACTGTTGTCCCCTTCCTGAAAATGTTCTGAACAAGTTTTGTTTTTCGTAAAACACAGACGAATATTTCCATGTGTCCCCAATAATCAAAACGTGAACAACTTATGTTGTTAAAAGTACCCATTGCGCTGTGAAATCATACAGAATGAGAGAAGTCCTGATAACTTTGTTTTAGATAATATCCAATAGGGACCCTTTGGGGTGGCTTGGATGGTTTGGCTTGAGACTTCCATTATGGAGGTCTCAAGTTCGAAACCCCTTGTCTGCGACGACAGGATATTATCCTTCTAGGTTCAGCTTGTCGCACGGGGTGTGTATGTTGCTGTTGACCTCTTTTGTGTGGTTTACGGACCATTCCATAGGAGTGGGGTTTATCCTGTGCGCATTCGAAGGGTAGCGGCCGTAGGGTCCATTGTCATTAAAAAAACAATATCCAAGAGGGTATCCTGATTAAAGAGTTCTACTCTACTTATTATAGGGTAAATAATTGTTCTCGTTTATTAATAAGACAAGTAACTATTCTCCTTCATTAAACACAGAATAATTAGAAATAACCGGTAAAATTTTTATACATAACATTCTCCCACTCGAGTTCAATGACCCTAAACATATTTGCAACCTAGAAATCTACCATAATGGCCCTAAACATTCTTGCCTCATTAATGTTCTTGATTTTCAATTGTAGCAAGAATGTTTTTGTATTTTCTGTTGACCAGGCAATTGATAGTTCTGTGGCCTGATTGTGATTATCATGGTGCCAATTTCATGGTTGGGTTCATTGTGGAAAGGAGTCTAAACAATTTGTGTTCGGGTACAATGGTGTCCTGATGTGTGTCAGATAGTATTTGGAAAAGTTTTATAGTATGTCCAAGGACATGTGAAGAAGGCTTATGACTTTACCTTATCAAGAGAAGAGTTAAATATTATCTAGGAGCGGGAGTTCTCATTTCACTGCAGCCACTACCTAATATATATTTGGAATTAATGGCATACAAGAGTAACAAACAGAGATAGATGAAGCTGATTCTGGTTTCCAACTTTGAGTTCTATTACATCTGTGACTTGTGAGAATATAACACTGGAGAAAAGGGCGTATGCGAATGCATGGATTGTAATGACTCACGCTTCTACTCATATATATAGAGAGACTTTGTAATGAGGATATTTGCACTTGTTCAATGCAGGACAGTATACAAAGCTAGACTAACCTGTTTACTATCTAATAATATTTCTCTTCCTTTTTCAGGGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGGGTAAGCATGCAAGGCCATCTCAATACTATTTTTTCCTCCGTCATCTGTATTGTGCACTTTTGTTATGTTTTTCAGACAATTTTTTGTTTATTTGTTGCTTTCACTAACATTTCTTGACATGGACCCCTGTTTCGGATTGAAAGGTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTGGTAAGCTCTTGATCTTGCTTTTCTACTCTGTGTTATCGGTATCTTAATAATCCAGAACACGAAATGACTCCAGATTGAGAAAGACTATGTAATTTTTAATTTAGATACATGCGAGCTAGCTGTTGGATAAATACTTGAACTATATGATTAGTGTCCGTGAACATTTCATTCTGAACCACATTTCTTCTGAAGCTCATCAAATGTGGCATAGTGGCACATAAATTCTCTTCAGTTCTTCAAATTTTCGAAATTCTAAATCATTATATATTTTCTGAAGGGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAGGTAATAATTTTGAACTCTTGCTACTTCAGTTTCAATGACAATTTGCATAGTAGTGAAAAAAATTACATTACTCGTGTATGCCTGCAGCTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATAT</genome_strand>
        <mrna_strand>ACAACTGAATCCTGAATTCATGGGCATTGATCTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTATAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG.........................................................................................CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG...............................................................................................................................................GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG.....................................................................................................................................................................................................................................................................................GGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAG.......................................................................................CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E242453" ref_strand="+" ref_description="SGN-E242453 [cLED-30-L4]">
      <seq>atggttacttatcaatctttcagttcttgcaaaatgtgttatagaggctaaattgagccaatcaatgattctctaccagctattttgtgggctctacatccttgactacttcttctatgaagagttcatgacctccacatgggatataatagcagagaggttgggctacatgctggtttttggtgatctagtctttataccgttcaccttcagtattcagggttggtggcttttgagtaacaaagtggagctaacaacagcagcaataattgccaattgcctcgtctttcttattgggtactcggtgttcagaggagccaataagcagaagcatgtatttaaaaaggatcccaaggcacccatatggggtagtcctccaaaagttattgggggaaagttgcttgcttctggctattgnggcattgcacggcactgtaattacctcggggatttgttgctggcatcgtctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="15325" stop="19687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15625" g_stop="15715" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15716" i_stop="15804" i_length="89">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15805" g_stop="15851" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="138" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15852" i_stop="16911" i_length="1060">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16912" g_stop="16993" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="220" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18716" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="297" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18936" g_stop="19055" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="417" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19333" g_stop="19387" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="472" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E242453" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15625" e_stop="15715"/>
          <exon e_start="15805" e_stop="15851"/>
          <exon e_start="16912" e_stop="16993"/>
          <exon e_start="18716" e_stop="18792"/>
          <exon e_start="18936" e_stop="19055"/>
          <exon e_start="19333" e_stop="19387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGGGTAAGTCGCTGGCTGTACACTTCCAAGTATACCTTCTTGAGTATTTGCTAGTGATTTTTAAAACTTCTTTTATATGTGTTTAATTGCAGCTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCACGTAAGTTGGCGGCTTCTTCTCCGTTTAACTTTTTTAAGATTGAAAAGTTGTTGTGAAGCAAGAACTGGTGTTTCTCTTCTATCCCTTCTTTAATTTATGTCAGCTGTCCAGAATTTTATCTCTCTTTCACTAGCAGTTTCTTCATCTTTATTTGTTGTGTTGTTATTATGCTTTGATCTAAAATTCAAAATAAATCATCCATATGACAAGAATACCACATTGTACGCAACAAAATTAGAAGAGGGTAGGAAAAGGTTTAGGTGTTTAGCCATGAGAAGCATTAGCTTGGGAAGGATAATATGGTTTCTGGTCATTTTCGTGCTTTAATAAGGTAATGCTGGAAGCTGTATAATTAAAGGATTATGAGGTTTGCCGACTGGACTTGTTTGGGACTGAGGTGTTGTTGTTTATGAGGTAGCTGGGTTTGGTCCCTGGTGTCATGGTCAGAGAATCAACAACTGGAAGGAAATGGAGGGAGTTAGGGCAGCATAGGTTGTTTTGCATGGTCTAGGGGTGGTTGATTAGTAGCCTGGTCACAAGGGTTAGAATTAAAACAAGAAACTTCTTCCGAGTTCTATACATCCAATAACATGTCAGTTGAAACGAAGCAACTCTGAAGAACCTCTAGTGATGCTAACATTTGAACCCTACGGAACACAACTACTCCCAGAAACCTTGGAAGGGTCTGGCTGGGGCACCACTATTCTCATGTTAGGATTGTTTTGGGGGTGGGTGGGTGTTGAATTATGATATGATTGTTTTTTAGCTATAGTGAGTGGTTTTAATTTGTACGTAGCATGTACCAATTCAATATTATTGGGAGCATGAATTTTTATTGAAAATTTGAATTTATAAGGTTTGACCTTTCTAAGCCCTAAAATGTCTCATTATTGGCTGAATGATATGTTTGTTTTGTTAATTGTTAACCAGTGATTATATATTGATGGTGGTCACCTCATCTATTCCTCTTACCTTTCCCTTTCTTTGTAGTCTTAATATTATCTTCCTCCATTAAGTTTCTCAGCTACGGTTGTGTAAAGTCTTGTTTCTCCATTCTCAGATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAGGCATGTATTCACAACCAATTCTTATTGCCACATACAAATCTATCCTTGTTTATATATGAATTATGGCACCTTTGATATCAGTATAATACAAATGTATATGACACCATTGGTATTAGTATAACACAAATGTATAGCTTGTAAATGAATTCTCTTCAAAAGCATAGTTTTGAACTATCACTTCTTGTGTCCTTCATCTCCTACTATATGTAATGATGCCTAGTTTCGTGGATACCAACACATTTTTTTTTTGAAATGGTAAAGGTTAGGCCATGCAACATATCCTTTTCCTGGAATTTATACCTCGCCTCATGCTACGATATTTTAATGGATATACTACTTGTTTGAATACCCAGAAAACTTTTTGTTTGTGTTTAGTTTTAAAGAATTTGAATCAAGGGCCTGTTAAAGAAGAGAAATGGAAAAGGAGAAACACATGTGTTTGTTTATCTTTTATTTTCTGAGGAAACCATGTATGGAAACTGTTGTCCCCTTCCTGAAAATGTTCTGAACAAGTTTTGTTTTTCGTAAAACACAGACGAATATTTCCATGTGTCCCCAATAATCAAAACGTGAACAACTTATGTTGTTAAAAGTACCCATTGCGCTGTGAAATCATACAGAATGAGAGAAGTCCTGATAACTTTGTTTTAGATAATATCCAATAGGGACCCTTTGGGGTGGCTTGGATGGTTTGGCTTGAGACTTCCATTATGGAGGTCTCAAGTTCGAAACCCCTTGTCTGCGACGACAGGATATTATCCTTCTAGGTTCAGCTTGTCGCACGGGGTGTGTATGTTGCTGTTGACCTCTTTTGTGTGGTTTACGGACCATTCCATAGGAGTGGGGTTTATCCTGTGCGCATTCGAAGGGTAGCGGCCGTAGGGTCCATTGTCATTAAAAAAACAATATCCAAGAGGGTATCCTGATTAAAGAGTTCTACTCTACTTATTATAGGGTAAATAATTGTTCTCGTTTATTAATAAGACAAGTAACTATTCTCCTTCATTAAACACAGAATAATTAGAAATAACCGGTAAAATTTTTATACATAACATTCTCCCACTCGAGTTCAATGACCCTAAACATATTTGCAACCTAGAAATCTACCATAATGGCCCTAAACATTCTTGCCTCATTAATGTTCTTGATTTTCAATTGTAGCAAGAATGTTTTTGTATTTTCTGTTGACCAGGCAATTGATAGTTCTGTGGCCTGATTGTGATTATCATGGTGCCAATTTCATGGTTGGGTTCATTGTGGAAAGGAGTCTAAACAATTTGTGTTCGGGTACAATGGTGTCCTGATGTGTGTCAGATAGTATTTGGAAAAGTTTTATAGTATGTCCAAGGACATGTGAAGAAGGCTTATGACTTTACCTTATCAAGAGAAGAGTTAAATATTATCTAGGAGCGGGAGTTCTCATTTCACTGCAGCCACTACCTAATATATATTTGGAATTAATGGCATACAAGAGTAACAAACAGAGATAGATGAAGCTGATTCTGGTTTCCAACTTTGAGTTCTATTACATCTGTGACTTGTGAGAATATAACACTGGAGAAAAGGGCGTATGCGAATGCATGGATTGTAATGACTCACGCTTCTACTCATATATATAGAGAGACTTTGTAATGAGGATATTTGCACTTGTTCAATGCAGGACAGTATACAAAGCTAGACTAACCTGTTTACTATCTAATAATATTTCTCTTCCTTTTTCAGGGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGGGTAAGCATGCAAGGCCATCTCAATACTATTTTTTCCTCCGTCATCTGTATTGTGCACTTTTGTTATGTTTTTCAGACAATTTTTTGTTTATTTGTTGCTTTCACTAACATTTCTTGACATGGACCCCTGTTTCGGATTGAAAGGTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTGGTAAGCTCTTGATCTTGCTTTTCTACTCTGTGTTATCGGTATCTTAATAATCCAGAACACGAAATGACTCCAGATTGAGAAAGACTATGTAATTTTTAATTTAGATACATGCGAGCTAGCTGTTGGATAAATACTTGAACTATATGATTAGTGTCCGTGAACATTTCATTCTGAACCACATTTCTTCTGAAGCTCATCAAATGTGGCATAGTGGCACATAAATTCTCTTCAGTTCTTCAAATTTTCGAAATTCTAAATCATTATATATTTTCTGAAGGGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTT</genome_strand>
        <mrna_strand>ATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTATAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG.........................................................................................CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG...............................................................................................................................................GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG.....................................................................................................................................................................................................................................................................................NGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E236254" ref_strand="+" ref_description="SGN-E236254 [cLED-20-C3]">
      <seq>atggttacttatcaatctttcagttcttgcaaaatgtgttatagaggctaaattgagccaatcaatgattctctaccagctattttgtgggctctacatccttgactacttcttctatgaagagttcatgacctccacatgggatataatagcagagaggttgggctacatgctggtttttggtgatctagtctttataccgttcaccttcagtattcagggttggtggcttttgagtaacaaagtggagctaacaacagcagcaataattgccaattgcctcgtctttcttattgggtactcggtgttcagaggagccaataagcagaagcatgtatttaaaaaggatcccaaggcacccatatggggtagtcctccaaaagttattgggggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="15325" stop="19335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15625" g_stop="15715" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15716" i_stop="15804" i_length="89">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15805" g_stop="15851" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="138" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15852" i_stop="16911" i_length="1060">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16912" g_stop="16993" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="220" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18716" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="297" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18936" g_stop="19035" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="397" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E236254" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15625" e_stop="15715"/>
          <exon e_start="15805" e_stop="15851"/>
          <exon e_start="16912" e_stop="16993"/>
          <exon e_start="18716" e_stop="18792"/>
          <exon e_start="18936" e_stop="19035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGGGTAAGTCGCTGGCTGTACACTTCCAAGTATACCTTCTTGAGTATTTGCTAGTGATTTTTAAAACTTCTTTTATATGTGTTTAATTGCAGCTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCACGTAAGTTGGCGGCTTCTTCTCCGTTTAACTTTTTTAAGATTGAAAAGTTGTTGTGAAGCAAGAACTGGTGTTTCTCTTCTATCCCTTCTTTAATTTATGTCAGCTGTCCAGAATTTTATCTCTCTTTCACTAGCAGTTTCTTCATCTTTATTTGTTGTGTTGTTATTATGCTTTGATCTAAAATTCAAAATAAATCATCCATATGACAAGAATACCACATTGTACGCAACAAAATTAGAAGAGGGTAGGAAAAGGTTTAGGTGTTTAGCCATGAGAAGCATTAGCTTGGGAAGGATAATATGGTTTCTGGTCATTTTCGTGCTTTAATAAGGTAATGCTGGAAGCTGTATAATTAAAGGATTATGAGGTTTGCCGACTGGACTTGTTTGGGACTGAGGTGTTGTTGTTTATGAGGTAGCTGGGTTTGGTCCCTGGTGTCATGGTCAGAGAATCAACAACTGGAAGGAAATGGAGGGAGTTAGGGCAGCATAGGTTGTTTTGCATGGTCTAGGGGTGGTTGATTAGTAGCCTGGTCACAAGGGTTAGAATTAAAACAAGAAACTTCTTCCGAGTTCTATACATCCAATAACATGTCAGTTGAAACGAAGCAACTCTGAAGAACCTCTAGTGATGCTAACATTTGAACCCTACGGAACACAACTACTCCCAGAAACCTTGGAAGGGTCTGGCTGGGGCACCACTATTCTCATGTTAGGATTGTTTTGGGGGTGGGTGGGTGTTGAATTATGATATGATTGTTTTTTAGCTATAGTGAGTGGTTTTAATTTGTACGTAGCATGTACCAATTCAATATTATTGGGAGCATGAATTTTTATTGAAAATTTGAATTTATAAGGTTTGACCTTTCTAAGCCCTAAAATGTCTCATTATTGGCTGAATGATATGTTTGTTTTGTTAATTGTTAACCAGTGATTATATATTGATGGTGGTCACCTCATCTATTCCTCTTACCTTTCCCTTTCTTTGTAGTCTTAATATTATCTTCCTCCATTAAGTTTCTCAGCTACGGTTGTGTAAAGTCTTGTTTCTCCATTCTCAGATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAGGCATGTATTCACAACCAATTCTTATTGCCACATACAAATCTATCCTTGTTTATATATGAATTATGGCACCTTTGATATCAGTATAATACAAATGTATATGACACCATTGGTATTAGTATAACACAAATGTATAGCTTGTAAATGAATTCTCTTCAAAAGCATAGTTTTGAACTATCACTTCTTGTGTCCTTCATCTCCTACTATATGTAATGATGCCTAGTTTCGTGGATACCAACACATTTTTTTTTTGAAATGGTAAAGGTTAGGCCATGCAACATATCCTTTTCCTGGAATTTATACCTCGCCTCATGCTACGATATTTTAATGGATATACTACTTGTTTGAATACCCAGAAAACTTTTTGTTTGTGTTTAGTTTTAAAGAATTTGAATCAAGGGCCTGTTAAAGAAGAGAAATGGAAAAGGAGAAACACATGTGTTTGTTTATCTTTTATTTTCTGAGGAAACCATGTATGGAAACTGTTGTCCCCTTCCTGAAAATGTTCTGAACAAGTTTTGTTTTTCGTAAAACACAGACGAATATTTCCATGTGTCCCCAATAATCAAAACGTGAACAACTTATGTTGTTAAAAGTACCCATTGCGCTGTGAAATCATACAGAATGAGAGAAGTCCTGATAACTTTGTTTTAGATAATATCCAATAGGGACCCTTTGGGGTGGCTTGGATGGTTTGGCTTGAGACTTCCATTATGGAGGTCTCAAGTTCGAAACCCCTTGTCTGCGACGACAGGATATTATCCTTCTAGGTTCAGCTTGTCGCACGGGGTGTGTATGTTGCTGTTGACCTCTTTTGTGTGGTTTACGGACCATTCCATAGGAGTGGGGTTTATCCTGTGCGCATTCGAAGGGTAGCGGCCGTAGGGTCCATTGTCATTAAAAAAACAATATCCAAGAGGGTATCCTGATTAAAGAGTTCTACTCTACTTATTATAGGGTAAATAATTGTTCTCGTTTATTAATAAGACAAGTAACTATTCTCCTTCATTAAACACAGAATAATTAGAAATAACCGGTAAAATTTTTATACATAACATTCTCCCACTCGAGTTCAATGACCCTAAACATATTTGCAACCTAGAAATCTACCATAATGGCCCTAAACATTCTTGCCTCATTAATGTTCTTGATTTTCAATTGTAGCAAGAATGTTTTTGTATTTTCTGTTGACCAGGCAATTGATAGTTCTGTGGCCTGATTGTGATTATCATGGTGCCAATTTCATGGTTGGGTTCATTGTGGAAAGGAGTCTAAACAATTTGTGTTCGGGTACAATGGTGTCCTGATGTGTGTCAGATAGTATTTGGAAAAGTTTTATAGTATGTCCAAGGACATGTGAAGAAGGCTTATGACTTTACCTTATCAAGAGAAGAGTTAAATATTATCTAGGAGCGGGAGTTCTCATTTCACTGCAGCCACTACCTAATATATATTTGGAATTAATGGCATACAAGAGTAACAAACAGAGATAGATGAAGCTGATTCTGGTTTCCAACTTTGAGTTCTATTACATCTGTGACTTGTGAGAATATAACACTGGAGAAAAGGGCGTATGCGAATGCATGGATTGTAATGACTCACGCTTCTACTCATATATATAGAGAGACTTTGTAATGAGGATATTTGCACTTGTTCAATGCAGGACAGTATACAAAGCTAGACTAACCTGTTTACTATCTAATAATATTTCTCTTCCTTTTTCAGGGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGGGTAAGCATGCAAGGCCATCTCAATACTATTTTTTCCTCCGTCATCTGTATTGTGCACTTTTGTTATGTTTTTCAGACAATTTTTTGTTTATTTGTTGCTTTCACTAACATTTCTTGACATGGACCCCTGTTTCGGATTGAAAGGTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAG</genome_strand>
        <mrna_strand>ATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTATAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG.........................................................................................CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG...............................................................................................................................................GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E306290" ref_strand="+" ref_description="SGN-E306290 [cLEX-13-K19]">
      <seq>tgttatagaggctaaattgagccaatcaatgattctctaccagctattttgtgggctctacatccttgactacttcttctatgaagagttcatgacctccacatgggatataatagcagagaggttgggctacatgctggtttttggtgatctagtctttataccgttcaccttcagtattcagggttggtggcttttgagtaacaaagtggagctaacaacagcagcaataattgccaattgcctcgtctttcttattgggtactcggtgttcagaggagccaataagcagaagcatgtatttaaaaaggatcccaaggcacccatatggggtagtcctccaaaagttattgggggaaagttgcttgcttctggctattggggcattgcacggcactgtaattacctcggggatttgttgctggcatcgtcttttagtttaccttgtggtataagctctgtggttccatacttttaccccatatatcttctcattctactcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="15361" stop="19844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15661" g_stop="15715" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15716" i_stop="15804" i_length="89">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15805" g_stop="15851" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="102" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15852" i_stop="16911" i_length="1060">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16912" g_stop="16993" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="184" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18716" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="261" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18936" g_stop="19055" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="381" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19333" g_stop="19407" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="456" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.001" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19495" g_stop="19544" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="506" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E306290" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15661" e_stop="15715"/>
          <exon e_start="15805" e_stop="15851"/>
          <exon e_start="16912" e_stop="16993"/>
          <exon e_start="18716" e_stop="18792"/>
          <exon e_start="18936" e_stop="19055"/>
          <exon e_start="19333" e_stop="19407"/>
          <exon e_start="19495" e_stop="19544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGGGTAAGTCGCTGGCTGTACACTTCCAAGTATACCTTCTTGAGTATTTGCTAGTGATTTTTAAAACTTCTTTTATATGTGTTTAATTGCAGCTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCACGTAAGTTGGCGGCTTCTTCTCCGTTTAACTTTTTTAAGATTGAAAAGTTGTTGTGAAGCAAGAACTGGTGTTTCTCTTCTATCCCTTCTTTAATTTATGTCAGCTGTCCAGAATTTTATCTCTCTTTCACTAGCAGTTTCTTCATCTTTATTTGTTGTGTTGTTATTATGCTTTGATCTAAAATTCAAAATAAATCATCCATATGACAAGAATACCACATTGTACGCAACAAAATTAGAAGAGGGTAGGAAAAGGTTTAGGTGTTTAGCCATGAGAAGCATTAGCTTGGGAAGGATAATATGGTTTCTGGTCATTTTCGTGCTTTAATAAGGTAATGCTGGAAGCTGTATAATTAAAGGATTATGAGGTTTGCCGACTGGACTTGTTTGGGACTGAGGTGTTGTTGTTTATGAGGTAGCTGGGTTTGGTCCCTGGTGTCATGGTCAGAGAATCAACAACTGGAAGGAAATGGAGGGAGTTAGGGCAGCATAGGTTGTTTTGCATGGTCTAGGGGTGGTTGATTAGTAGCCTGGTCACAAGGGTTAGAATTAAAACAAGAAACTTCTTCCGAGTTCTATACATCCAATAACATGTCAGTTGAAACGAAGCAACTCTGAAGAACCTCTAGTGATGCTAACATTTGAACCCTACGGAACACAACTACTCCCAGAAACCTTGGAAGGGTCTGGCTGGGGCACCACTATTCTCATGTTAGGATTGTTTTGGGGGTGGGTGGGTGTTGAATTATGATATGATTGTTTTTTAGCTATAGTGAGTGGTTTTAATTTGTACGTAGCATGTACCAATTCAATATTATTGGGAGCATGAATTTTTATTGAAAATTTGAATTTATAAGGTTTGACCTTTCTAAGCCCTAAAATGTCTCATTATTGGCTGAATGATATGTTTGTTTTGTTAATTGTTAACCAGTGATTATATATTGATGGTGGTCACCTCATCTATTCCTCTTACCTTTCCCTTTCTTTGTAGTCTTAATATTATCTTCCTCCATTAAGTTTCTCAGCTACGGTTGTGTAAAGTCTTGTTTCTCCATTCTCAGATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAGGCATGTATTCACAACCAATTCTTATTGCCACATACAAATCTATCCTTGTTTATATATGAATTATGGCACCTTTGATATCAGTATAATACAAATGTATATGACACCATTGGTATTAGTATAACACAAATGTATAGCTTGTAAATGAATTCTCTTCAAAAGCATAGTTTTGAACTATCACTTCTTGTGTCCTTCATCTCCTACTATATGTAATGATGCCTAGTTTCGTGGATACCAACACATTTTTTTTTTGAAATGGTAAAGGTTAGGCCATGCAACATATCCTTTTCCTGGAATTTATACCTCGCCTCATGCTACGATATTTTAATGGATATACTACTTGTTTGAATACCCAGAAAACTTTTTGTTTGTGTTTAGTTTTAAAGAATTTGAATCAAGGGCCTGTTAAAGAAGAGAAATGGAAAAGGAGAAACACATGTGTTTGTTTATCTTTTATTTTCTGAGGAAACCATGTATGGAAACTGTTGTCCCCTTCCTGAAAATGTTCTGAACAAGTTTTGTTTTTCGTAAAACACAGACGAATATTTCCATGTGTCCCCAATAATCAAAACGTGAACAACTTATGTTGTTAAAAGTACCCATTGCGCTGTGAAATCATACAGAATGAGAGAAGTCCTGATAACTTTGTTTTAGATAATATCCAATAGGGACCCTTTGGGGTGGCTTGGATGGTTTGGCTTGAGACTTCCATTATGGAGGTCTCAAGTTCGAAACCCCTTGTCTGCGACGACAGGATATTATCCTTCTAGGTTCAGCTTGTCGCACGGGGTGTGTATGTTGCTGTTGACCTCTTTTGTGTGGTTTACGGACCATTCCATAGGAGTGGGGTTTATCCTGTGCGCATTCGAAGGGTAGCGGCCGTAGGGTCCATTGTCATTAAAAAAACAATATCCAAGAGGGTATCCTGATTAAAGAGTTCTACTCTACTTATTATAGGGTAAATAATTGTTCTCGTTTATTAATAAGACAAGTAACTATTCTCCTTCATTAAACACAGAATAATTAGAAATAACCGGTAAAATTTTTATACATAACATTCTCCCACTCGAGTTCAATGACCCTAAACATATTTGCAACCTAGAAATCTACCATAATGGCCCTAAACATTCTTGCCTCATTAATGTTCTTGATTTTCAATTGTAGCAAGAATGTTTTTGTATTTTCTGTTGACCAGGCAATTGATAGTTCTGTGGCCTGATTGTGATTATCATGGTGCCAATTTCATGGTTGGGTTCATTGTGGAAAGGAGTCTAAACAATTTGTGTTCGGGTACAATGGTGTCCTGATGTGTGTCAGATAGTATTTGGAAAAGTTTTATAGTATGTCCAAGGACATGTGAAGAAGGCTTATGACTTTACCTTATCAAGAGAAGAGTTAAATATTATCTAGGAGCGGGAGTTCTCATTTCACTGCAGCCACTACCTAATATATATTTGGAATTAATGGCATACAAGAGTAACAAACAGAGATAGATGAAGCTGATTCTGGTTTCCAACTTTGAGTTCTATTACATCTGTGACTTGTGAGAATATAACACTGGAGAAAAGGGCGTATGCGAATGCATGGATTGTAATGACTCACGCTTCTACTCATATATATAGAGAGACTTTGTAATGAGGATATTTGCACTTGTTCAATGCAGGACAGTATACAAAGCTAGACTAACCTGTTTACTATCTAATAATATTTCTCTTCCTTTTTCAGGGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGGGTAAGCATGCAAGGCCATCTCAATACTATTTTTTCCTCCGTCATCTGTATTGTGCACTTTTGTTATGTTTTTCAGACAATTTTTTGTTTATTTGTTGCTTTCACTAACATTTCTTGACATGGACCCCTGTTTCGGATTGAAAGGTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTGGTAAGCTCTTGATCTTGCTTTTCTACTCTGTGTTATCGGTATCTTAATAATCCAGAACACGAAATGACTCCAGATTGAGAAAGACTATGTAATTTTTAATTTAGATACATGCGAGCTAGCTGTTGGATAAATACTTGAACTATATGATTAGTGTCCGTGAACATTTCATTCTGAACCACATTTCTTCTGAAGCTCATCAAATGTGGCATAGTGGCACATAAATTCTCTTCAGTTCTTCAAATTTTCGAAATTCTAAATCATTATATATTTTCTGAAGGGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAGGTAATAATTTTGAACTCTTGCTACTTCAGTTTCAATGACAATTTGCATAGTAGTGAAAAAAATTACATTACTCGTGTATGCCTGCAGCTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATAT</genome_strand>
        <mrna_strand>TGTTATAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG.........................................................................................CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG...............................................................................................................................................GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG.....................................................................................................................................................................................................................................................................................GGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAG.......................................................................................CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E376859" ref_strand="+" ref_description="SGN-E376859 [TUS-19-P19]">
      <seq>tggtttttggtgatctagtctttataccgttcaccttcagtattcagggttggtggcttttgagtaacaaagtggagctaacaacagcagcaataattgccaattgcctcgtctttcttattgggtactcggtgttcagaggagccaataagcagaagcatgtatttaaaaaggatcccaaggcacccatatggggtagtcctccaaaagttattgggggaaagttgcttgcttctggctattggggcattgcacggcactgtaattacctcggggatttgttgctggcatcgtcttttagtttaccttgtggtataagctctgtggttccatacttttaccccatatatcttctcattctactcatatggagggagagaagggacgaagctagatgtgcagagaagtacaaagatgtgtgggctgaataccgtaaacttgttccttacaggatcttaccttacgtttactagctcaatcgtttgtccacgttgcttgtgcattagagtcagaattagcctcactgtaccgcactacccaagcatgagaagggacgaactcatgaatgaatattacatcaaattcgagcttttgccctatctatgcagctttctcatctcctctacgaaagtaatctttttatctatttcagttaggatcaacactgtatccaggttgtaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="16647" stop="20161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16947" g_stop="16993" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18716" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="124" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18936" g_stop="19055" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="244" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19333" g_stop="19407" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="319" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.001" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19495" g_stop="19861" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="686" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E376859" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16947" e_stop="16993"/>
          <exon e_start="18716" e_stop="18792"/>
          <exon e_start="18936" e_stop="19055"/>
          <exon e_start="19333" e_stop="19407"/>
          <exon e_start="19495" e_stop="19861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAGGCATGTATTCACAACCAATTCTTATTGCCACATACAAATCTATCCTTGTTTATATATGAATTATGGCACCTTTGATATCAGTATAATACAAATGTATATGACACCATTGGTATTAGTATAACACAAATGTATAGCTTGTAAATGAATTCTCTTCAAAAGCATAGTTTTGAACTATCACTTCTTGTGTCCTTCATCTCCTACTATATGTAATGATGCCTAGTTTCGTGGATACCAACACATTTTTTTTTTGAAATGGTAAAGGTTAGGCCATGCAACATATCCTTTTCCTGGAATTTATACCTCGCCTCATGCTACGATATTTTAATGGATATACTACTTGTTTGAATACCCAGAAAACTTTTTGTTTGTGTTTAGTTTTAAAGAATTTGAATCAAGGGCCTGTTAAAGAAGAGAAATGGAAAAGGAGAAACACATGTGTTTGTTTATCTTTTATTTTCTGAGGAAACCATGTATGGAAACTGTTGTCCCCTTCCTGAAAATGTTCTGAACAAGTTTTGTTTTTCGTAAAACACAGACGAATATTTCCATGTGTCCCCAATAATCAAAACGTGAACAACTTATGTTGTTAAAAGTACCCATTGCGCTGTGAAATCATACAGAATGAGAGAAGTCCTGATAACTTTGTTTTAGATAATATCCAATAGGGACCCTTTGGGGTGGCTTGGATGGTTTGGCTTGAGACTTCCATTATGGAGGTCTCAAGTTCGAAACCCCTTGTCTGCGACGACAGGATATTATCCTTCTAGGTTCAGCTTGTCGCACGGGGTGTGTATGTTGCTGTTGACCTCTTTTGTGTGGTTTACGGACCATTCCATAGGAGTGGGGTTTATCCTGTGCGCATTCGAAGGGTAGCGGCCGTAGGGTCCATTGTCATTAAAAAAACAATATCCAAGAGGGTATCCTGATTAAAGAGTTCTACTCTACTTATTATAGGGTAAATAATTGTTCTCGTTTATTAATAAGACAAGTAACTATTCTCCTTCATTAAACACAGAATAATTAGAAATAACCGGTAAAATTTTTATACATAACATTCTCCCACTCGAGTTCAATGACCCTAAACATATTTGCAACCTAGAAATCTACCATAATGGCCCTAAACATTCTTGCCTCATTAATGTTCTTGATTTTCAATTGTAGCAAGAATGTTTTTGTATTTTCTGTTGACCAGGCAATTGATAGTTCTGTGGCCTGATTGTGATTATCATGGTGCCAATTTCATGGTTGGGTTCATTGTGGAAAGGAGTCTAAACAATTTGTGTTCGGGTACAATGGTGTCCTGATGTGTGTCAGATAGTATTTGGAAAAGTTTTATAGTATGTCCAAGGACATGTGAAGAAGGCTTATGACTTTACCTTATCAAGAGAAGAGTTAAATATTATCTAGGAGCGGGAGTTCTCATTTCACTGCAGCCACTACCTAATATATATTTGGAATTAATGGCATACAAGAGTAACAAACAGAGATAGATGAAGCTGATTCTGGTTTCCAACTTTGAGTTCTATTACATCTGTGACTTGTGAGAATATAACACTGGAGAAAAGGGCGTATGCGAATGCATGGATTGTAATGACTCACGCTTCTACTCATATATATAGAGAGACTTTGTAATGAGGATATTTGCACTTGTTCAATGCAGGACAGTATACAAAGCTAGACTAACCTGTTTACTATCTAATAATATTTCTCTTCCTTTTTCAGGGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGGGTAAGCATGCAAGGCCATCTCAATACTATTTTTTCCTCCGTCATCTGTATTGTGCACTTTTGTTATGTTTTTCAGACAATTTTTTGTTTATTTGTTGCTTTCACTAACATTTCTTGACATGGACCCCTGTTTCGGATTGAAAGGTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTGGTAAGCTCTTGATCTTGCTTTTCTACTCTGTGTTATCGGTATCTTAATAATCCAGAACACGAAATGACTCCAGATTGAGAAAGACTATGTAATTTTTAATTTAGATACATGCGAGCTAGCTGTTGGATAAATACTTGAACTATATGATTAGTGTCCGTGAACATTTCATTCTGAACCACATTTCTTCTGAAGCTCATCAAATGTGGCATAGTGGCACATAAATTCTCTTCAGTTCTTCAAATTTTCGAAATTCTAAATCATTATATATTTTCTGAAGGGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAGGTAATAATTTTGAACTCTTGCTACTTCAGTTTCAATGACAATTTGCATAGTAGTGAAAAAAATTACATTACTCGTGTATGCCTGCAGCTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGTTTGTCCACGTTGCTTGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGCACTACCCAAGCATGAGAAGGGACGAACTCATGAATGAATATTACATCAAATTCGAGCTTTTGCCCTATCTATGCAGCTTTCTCATCTCCTCTACGAAAGTAATCTTTTAATCTATTTCAGTTAGGATCAACACTGTATCCAGGTTGTAACTGAT</genome_strand>
        <mrna_strand>TGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG...............................................................................................................................................GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG.....................................................................................................................................................................................................................................................................................GGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAG.......................................................................................CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGTTTGTCCACGTTGCTTGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGCACTACCCAAGCATGAGAAGGGACGAACTCATGAATGAATATTACATCAAATTCGAGCTTTTGCCCTATCTATGCAGCTTTCTCATCTCCTCTACGAAAGTAATCTTTTTATCTATTTCAGTTAGGATCAACACTGTATCCAGGTTGTAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E233283" ref_strand="+" ref_description="SGN-E233283 [cLED-6-D6]">
      <seq>tggtttttggtgatctagtctttataccgttcaccttcagtattcagggttggtggcttttgagtaacaaagtggagctaacaacagcagcaataattgccaattgcctcgtctttcttattgggtactcggtgttcagaggagccaataagcagaagcatgtatttaaaaaggatcccaaggcacccatatggggtagtcctccaaaagttattgggggaaagttgcttgcttctggctattggggcattgcacggcactgtaattacctcggggatttgttgctggcatcgtcttttagtttaccttgtggtataagctctgtggttccatacttttaccccatatatcttctcattctactcatatggagggagagaagggacgaagctagatgtgcagagaagtacaaagatgtgtgggctgaataccgtaaacttgttccttacaggatcttaccttacgtttactagctcaatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="16647" stop="19957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16947" g_stop="16993" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18716" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="124" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18936" g_stop="19055" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="244" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19333" g_stop="19407" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="319" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.001" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19495" g_stop="19657" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="482" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E233283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16947" e_stop="16993"/>
          <exon e_start="18716" e_stop="18792"/>
          <exon e_start="18936" e_stop="19055"/>
          <exon e_start="19333" e_stop="19407"/>
          <exon e_start="19495" e_stop="19657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAGGCATGTATTCACAACCAATTCTTATTGCCACATACAAATCTATCCTTGTTTATATATGAATTATGGCACCTTTGATATCAGTATAATACAAATGTATATGACACCATTGGTATTAGTATAACACAAATGTATAGCTTGTAAATGAATTCTCTTCAAAAGCATAGTTTTGAACTATCACTTCTTGTGTCCTTCATCTCCTACTATATGTAATGATGCCTAGTTTCGTGGATACCAACACATTTTTTTTTTGAAATGGTAAAGGTTAGGCCATGCAACATATCCTTTTCCTGGAATTTATACCTCGCCTCATGCTACGATATTTTAATGGATATACTACTTGTTTGAATACCCAGAAAACTTTTTGTTTGTGTTTAGTTTTAAAGAATTTGAATCAAGGGCCTGTTAAAGAAGAGAAATGGAAAAGGAGAAACACATGTGTTTGTTTATCTTTTATTTTCTGAGGAAACCATGTATGGAAACTGTTGTCCCCTTCCTGAAAATGTTCTGAACAAGTTTTGTTTTTCGTAAAACACAGACGAATATTTCCATGTGTCCCCAATAATCAAAACGTGAACAACTTATGTTGTTAAAAGTACCCATTGCGCTGTGAAATCATACAGAATGAGAGAAGTCCTGATAACTTTGTTTTAGATAATATCCAATAGGGACCCTTTGGGGTGGCTTGGATGGTTTGGCTTGAGACTTCCATTATGGAGGTCTCAAGTTCGAAACCCCTTGTCTGCGACGACAGGATATTATCCTTCTAGGTTCAGCTTGTCGCACGGGGTGTGTATGTTGCTGTTGACCTCTTTTGTGTGGTTTACGGACCATTCCATAGGAGTGGGGTTTATCCTGTGCGCATTCGAAGGGTAGCGGCCGTAGGGTCCATTGTCATTAAAAAAACAATATCCAAGAGGGTATCCTGATTAAAGAGTTCTACTCTACTTATTATAGGGTAAATAATTGTTCTCGTTTATTAATAAGACAAGTAACTATTCTCCTTCATTAAACACAGAATAATTAGAAATAACCGGTAAAATTTTTATACATAACATTCTCCCACTCGAGTTCAATGACCCTAAACATATTTGCAACCTAGAAATCTACCATAATGGCCCTAAACATTCTTGCCTCATTAATGTTCTTGATTTTCAATTGTAGCAAGAATGTTTTTGTATTTTCTGTTGACCAGGCAATTGATAGTTCTGTGGCCTGATTGTGATTATCATGGTGCCAATTTCATGGTTGGGTTCATTGTGGAAAGGAGTCTAAACAATTTGTGTTCGGGTACAATGGTGTCCTGATGTGTGTCAGATAGTATTTGGAAAAGTTTTATAGTATGTCCAAGGACATGTGAAGAAGGCTTATGACTTTACCTTATCAAGAGAAGAGTTAAATATTATCTAGGAGCGGGAGTTCTCATTTCACTGCAGCCACTACCTAATATATATTTGGAATTAATGGCATACAAGAGTAACAAACAGAGATAGATGAAGCTGATTCTGGTTTCCAACTTTGAGTTCTATTACATCTGTGACTTGTGAGAATATAACACTGGAGAAAAGGGCGTATGCGAATGCATGGATTGTAATGACTCACGCTTCTACTCATATATATAGAGAGACTTTGTAATGAGGATATTTGCACTTGTTCAATGCAGGACAGTATACAAAGCTAGACTAACCTGTTTACTATCTAATAATATTTCTCTTCCTTTTTCAGGGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGGGTAAGCATGCAAGGCCATCTCAATACTATTTTTTCCTCCGTCATCTGTATTGTGCACTTTTGTTATGTTTTTCAGACAATTTTTTGTTTATTTGTTGCTTTCACTAACATTTCTTGACATGGACCCCTGTTTCGGATTGAAAGGTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTGGTAAGCTCTTGATCTTGCTTTTCTACTCTGTGTTATCGGTATCTTAATAATCCAGAACACGAAATGACTCCAGATTGAGAAAGACTATGTAATTTTTAATTTAGATACATGCGAGCTAGCTGTTGGATAAATACTTGAACTATATGATTAGTGTCCGTGAACATTTCATTCTGAACCACATTTCTTCTGAAGCTCATCAAATGTGGCATAGTGGCACATAAATTCTCTTCAGTTCTTCAAATTTTCGAAATTCTAAATCATTATATATTTTCTGAAGGGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAGGTAATAATTTTGAACTCTTGCTACTTCAGTTTCAATGACAATTTGCATAGTAGTGAAAAAAATTACATTACTCGTGTATGCCTGCAGCTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGT</genome_strand>
        <mrna_strand>TGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG...............................................................................................................................................GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG.....................................................................................................................................................................................................................................................................................GGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAG.......................................................................................CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E227039" ref_strand="+" ref_description="SGN-E227039 [cLED-1-L6]">
      <seq>tggtttttggtgatctagtctttataccgttcaccttcagtattcagggttggtggcttttgagtaacaaagtggagctaacaacagcagcgttaattgccaattgcctcgtctttcttattggattctccgtgttcaaaaggaccaataagcagaagcatgtatttaaaaaggatcccaaggcacccatatggggtagtcctccaaaagttattgggggaaagttgcttgcttctggctattggggcattgcacggcactgtaattacctcggggatttgttgctggcatcgtcttttagtttaccttgtggtataagctctgtggttccatacttttaccccatatatcttctcattctactcatatggagggagagaagggacgaagctagatgtgcagagaagtacaaagatgtgtgggctgaataccgtaaacttgttccttacaggatcttaccttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="16647" stop="19940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16947" g_stop="16993" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18716" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="124" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.811" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18936" g_stop="19055" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="244" r_length="120" r_score="0.942"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19333" g_stop="19407" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="319" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.001" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19495" g_stop="19640" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="465" r_length="146" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E227039" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16947" e_stop="16993"/>
          <exon e_start="18716" e_stop="18792"/>
          <exon e_start="18936" e_stop="19055"/>
          <exon e_start="19333" e_stop="19407"/>
          <exon e_start="19495" e_stop="19640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAGGCATGTATTCACAACCAATTCTTATTGCCACATACAAATCTATCCTTGTTTATATATGAATTATGGCACCTTTGATATCAGTATAATACAAATGTATATGACACCATTGGTATTAGTATAACACAAATGTATAGCTTGTAAATGAATTCTCTTCAAAAGCATAGTTTTGAACTATCACTTCTTGTGTCCTTCATCTCCTACTATATGTAATGATGCCTAGTTTCGTGGATACCAACACATTTTTTTTTTGAAATGGTAAAGGTTAGGCCATGCAACATATCCTTTTCCTGGAATTTATACCTCGCCTCATGCTACGATATTTTAATGGATATACTACTTGTTTGAATACCCAGAAAACTTTTTGTTTGTGTTTAGTTTTAAAGAATTTGAATCAAGGGCCTGTTAAAGAAGAGAAATGGAAAAGGAGAAACACATGTGTTTGTTTATCTTTTATTTTCTGAGGAAACCATGTATGGAAACTGTTGTCCCCTTCCTGAAAATGTTCTGAACAAGTTTTGTTTTTCGTAAAACACAGACGAATATTTCCATGTGTCCCCAATAATCAAAACGTGAACAACTTATGTTGTTAAAAGTACCCATTGCGCTGTGAAATCATACAGAATGAGAGAAGTCCTGATAACTTTGTTTTAGATAATATCCAATAGGGACCCTTTGGGGTGGCTTGGATGGTTTGGCTTGAGACTTCCATTATGGAGGTCTCAAGTTCGAAACCCCTTGTCTGCGACGACAGGATATTATCCTTCTAGGTTCAGCTTGTCGCACGGGGTGTGTATGTTGCTGTTGACCTCTTTTGTGTGGTTTACGGACCATTCCATAGGAGTGGGGTTTATCCTGTGCGCATTCGAAGGGTAGCGGCCGTAGGGTCCATTGTCATTAAAAAAACAATATCCAAGAGGGTATCCTGATTAAAGAGTTCTACTCTACTTATTATAGGGTAAATAATTGTTCTCGTTTATTAATAAGACAAGTAACTATTCTCCTTCATTAAACACAGAATAATTAGAAATAACCGGTAAAATTTTTATACATAACATTCTCCCACTCGAGTTCAATGACCCTAAACATATTTGCAACCTAGAAATCTACCATAATGGCCCTAAACATTCTTGCCTCATTAATGTTCTTGATTTTCAATTGTAGCAAGAATGTTTTTGTATTTTCTGTTGACCAGGCAATTGATAGTTCTGTGGCCTGATTGTGATTATCATGGTGCCAATTTCATGGTTGGGTTCATTGTGGAAAGGAGTCTAAACAATTTGTGTTCGGGTACAATGGTGTCCTGATGTGTGTCAGATAGTATTTGGAAAAGTTTTATAGTATGTCCAAGGACATGTGAAGAAGGCTTATGACTTTACCTTATCAAGAGAAGAGTTAAATATTATCTAGGAGCGGGAGTTCTCATTTCACTGCAGCCACTACCTAATATATATTTGGAATTAATGGCATACAAGAGTAACAAACAGAGATAGATGAAGCTGATTCTGGTTTCCAACTTTGAGTTCTATTACATCTGTGACTTGTGAGAATATAACACTGGAGAAAAGGGCGTATGCGAATGCATGGATTGTAATGACTCACGCTTCTACTCATATATATAGAGAGACTTTGTAATGAGGATATTTGCACTTGTTCAATGCAGGACAGTATACAAAGCTAGACTAACCTGTTTACTATCTAATAATATTTCTCTTCCTTTTTCAGGGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGGGTAAGCATGCAAGGCCATCTCAATACTATTTTTTCCTCCGTCATCTGTATTGTGCACTTTTGTTATGTTTTTCAGACAATTTTTTGTTTATTTGTTGCTTTCACTAACATTTCTTGACATGGACCCCTGTTTCGGATTGAAAGGTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTGGTAAGCTCTTGATCTTGCTTTTCTACTCTGTGTTATCGGTATCTTAATAATCCAGAACACGAAATGACTCCAGATTGAGAAAGACTATGTAATTTTTAATTTAGATACATGCGAGCTAGCTGTTGGATAAATACTTGAACTATATGATTAGTGTCCGTGAACATTTCATTCTGAACCACATTTCTTCTGAAGCTCATCAAATGTGGCATAGTGGCACATAAATTCTCTTCAGTTCTTCAAATTTTCGAAATTCTAAATCATTATATATTTTCTGAAGGGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAGGTAATAATTTTGAACTCTTGCTACTTCAGTTTCAATGACAATTTGCATAGTAGTGAAAAAAATTACATTACTCGTGTATGCCTGCAGCTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACG</genome_strand>
        <mrna_strand>TGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCGTTAATTGCCAATTGCCTCGTCTTTCTTATTGG...............................................................................................................................................ATTCTCCGTGTTCAAAAGGACCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG.....................................................................................................................................................................................................................................................................................GGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAG.......................................................................................CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E376858" ref_strand="-" ref_description="SGN-E376858 [TUS-19-P19]">
      <seq>atttggtgctggcatcgtcttttagtttcccttgtggtataagctctgtggttccatacttttaccccatatatcttctcattctactcatatggagggagagaagggacgaagctagatgtgcagagaagtacaaagatgtgtgggctgaataccgtaaacttgttccttacaggatcttaccttacgtttactagctcaatcgtttgtccacgttgcttgtgcattagagtcagaattagcctcactgtaccgccctacccaagcatgagaagggacgaactcatgaatgaatattacatcaaattcgagcttttgccctatctatgcagctttctcatctcctctacgaaagtaatcttttaatctatttcagttaggatcaaccctgtatccaggttgtaactgattgcttagcttttgaaagtttttccagaaccaacttgtacactagatgtactttatcatggcaggatttaaatgtgctgcttgtattgaatgccaactatggaattatttttcatggtttgtaatcttggagcagcttactaatgtgtgctgaaattttcgaatgattttcccgactttttagttttttgtatgccccttgactaatttcaggagatatttgctacgttccccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="19065" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19365" g_stop="19407" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87">
            <donor d_prob="0.985" d_score="0.95"/>
            <acceptor a_prob="0.001" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19495" g_stop="20096" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="645" r_length="602" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="673"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E376858" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376858" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19365" e_stop="19407"/>
          <exon e_start="19495" e_stop="20096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAGGTAATAATTTTGAACTCTTGCTACTTCAGTTTCAATGACAATTTGCATAGTAGTGAAAAAAATTACATTACTCGTGTATGCCTGCAGCTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGTTTGTCCACGTTGCTTGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGCACTACCCAAGCATGAGAAGGGACGAACTCATGAATGAATATTACATCAAATTCGAGCTTTTGCCCTATCTATGCAGCTTTCTCATCTCCTCTACGAAAGTAATCTTTTAATCTATTTCAGTTAGGATCAACACTGTATCCAGGTTGTAACTGATTGCTTAGCTTTTGAAAGTTTTTCCAGAACCAACTTGTACACTAGATGTACTTTATCATGGCAGGATTTAAATGTGCTGCTTGTATTGAATGCCAACTATGGAATTATTTTTCATGGTTTGTAATCTTGGAGCAGCTTACTAATGTGTGCTGAAATTTTCGAATGATTTTCCCGACTTTCTAGTTTTTTGTATGCACCTTGACTAATTTCAGGAGATATTTGCTACGTTCCACCAG</genome_strand>
        <mrna_strand>ATTTGGTGCTGGCATCGTCTTTTAGTTTCCCTTGTGGTATAAG.......................................................................................CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGTTTGTCCACGTTGCTTGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGCCCTACCCAAGCATGAGAAGGGACGAACTCATGAATGAATATTACATCAAATTCGAGCTTTTGCCCTATCTATGCAGCTTTCTCATCTCCTCTACGAAAGTAATCTTTTAATCTATTTCAGTTAGGATCAACCCTGTATCCAGGTTGTAACTGATTGCTTAGCTTTTGAAAGTTTTTCCAGAACCAACTTGTACACTAGATGTACTTTATCATGGCAGGATTTAAATGTGCTGCTTGTATTGAATGCCAACTATGGAATTATTTTTCATGGTTTGTAATCTTGGAGCAGCTTACTAATGTGTGCTGAAATTTTCGAATGATTTTCCCGACTTTTTAGTTTTTTGTATGCCCCTTGACTAATTTCAGGAGATATTTGCTACGTTCCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E227040" ref_strand="+" ref_description="SGN-E227040 [cLED-1-L6]">
      <seq>ttttttttttttttttttttttttttttttggtggaacgtagcaaatatctcctgaaattagtcaaggggcatacaaaaaactagaaagtcgggaaaatcattcgaaaatttcagcacacattagtaagctgctccaagattacaaaccatgaaaaataattccatagttggcattcaatacaagcagcacatttaaatcctgccatgataaagtacatctagtgtacaagttggttctggaaaaactttcaaaagctaagcaatcagttacaacctggatacagtgttgatcctaactgaaatagattaaaagattactttcgtagaggagatgagaaagctgcatagatagggcaaaagctcgaatttgatgtaatattcattcatgagttcgtcccttctcatgcttgggtagtgcggtacagtgaggctaattctgactctaatgcacaagcaacgtggacaaacgattgagctagtaaacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="25371" stop="19337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21870" g_stop="21850" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21849" i_stop="20104" i_length="1746">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20103" g_stop="19637" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="488" r_length="467" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E227040" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21870" e_stop="21850"/>
          <exon e_start="20103" e_stop="19637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTATTCCTTATTTTACAATATCCTCGATCCTCGAACCTAAGATGCTTTTAGAAAAGGTCAACGTACGGACAATCAGAAATAACCTCCAAATCCAAAAAAGTTAATTCAAATTTATATAGCTGAGATTTTATATTCGCCTCTATACATATTTAGGATATAATAAGAAAATTCTAAATTATGTGAGAATATTTTCATAAATTATTATATAAATTCTCAAAGAATCTCCATATAATTCATACTTTTCTTTTTCTTGTAGTACGACTATCTATTATCTTGGCCTCTATTTTATTTTGAAGATTCCAGCACTAGTCATTTTGATTTCCAGAAATTGAGAGCCATTAAGCATAGCACGTGTAAGTCGCTTGTTAAAATTTTCAAGGCAACTAAAATATGAAGAGATTATACTATAATTTATATTTTTATGGTATTAATTTATATGACACATTTTAAATTTCAAAATTCAAATAATTTTATTTTGTTAGTGAATTTTTCATTCTTTTAAATATTTTGAATTATTAATTATCGTGATTTATAATTTTTTTATATAATTTACAAATATATAAATTTTATTTTAAAAAATTTGAAGATTATGTAAATAAATTCTCAATCAAACCTAAATTGTTTGACTCAAAAAACGAAAATGTGTAACATAATATATTGAGACTTTCATCTAAGTAGCCTAGAGAATATGTTGAAAATTCGCATTCTAACCAACCAAGGTAATGGTGGAGTGGTAAGTACTTCATCTTTAACTTATAGATCTGGGGTTCGTGTTTCCTTGAATGTAGAGTCATCTTTGTTAGCGAGTATTTTATCCCAATATAGAACTTTCCTACCGAATTTAAATTAAATCAAACTCTAATATGAATTCGAATTCTACTAAGCTCCAATATAGATCACTCTTAGAATAAAGAACCATAAGAGACATTTGCCCTTTCACAAGTTCAAACATTATTAAGTCATCATTACTTAATTTCCTATTGTAATATTTAAATAACTTGTTCCGATCAAATGAACCAAAGAGTCCTACGTTCTTAAAATTAAATAAACGTAGTAGGTTGGCTTTTTAGTTATAGAGAACTTAAAAGGAATAAAAGTTGAAGCAAACCTAACCCTACTGATTAGTGTAAGACAACCAAATTATATTGTTTTCAATACTTCAATAAAATATTCCACATTCGTTCTTTTTTATCTGAAAATTTATCGAAAAATAACCATTCTACCCCATGAAAATAGACTGCGTATGTTGTTGCTTCAGCATTGAAACAGAAGTGCAAATATTGACTGGGCCAAATTTGGATCATAATAAGAGGGCTGATTTGTATCATCTTGGTGTTTATTCAACATCTTGGGCCTTAATTTGGATCACAATTACAATTTAGAGGGCTTAAGCTTGCTTCATGTTAATATACATTCATCATAGTAGGCCTTAATAACCCATTACATTTCTTGTATACACTTTGTACATACTGTATAATTTATAGTACAATGTGTATAATCAGAGTGTATGCATTATACACTTCCAATTTTATATCACCCTTCAATTCGAATAAGCAAAAGCAATATCTCCTTTCATTACTATACAGTCAGTTCCCGCGTCGTTGCCGCATGGCCGGGAACCACCATAAATAGAAAAAAAGATGAGCAACAATTCAATTTGATATGGACAGTACTGTTACATATCTGAATTTGCTTCAATCTGTAGTAGATTAAGAAAATGAGTCAAATATGTCCTGAGCTTAGTGGACAGAATCACCATATACATGTTGCCTGGTGGAACGTAGCAAATATCTCCTGAAATTAGTCAAGGTGCATACAAAAAACTAGAAAGTCGGGAAAATCATTCGAAAATTTCAGCACACATTAGTAAGCTGCTCCAAGATTACAAACCATGAAAAATAATTCCATAGTTGGCATTCAATACAAGCAGCACATTTAAATCCTGCCATGATAAAGTACATCTAGTGTACAAGTTGGTTCTGGAAAAACTTTCAAAAGCTAAGCAATCAGTTACAACCTGGATACAGTGTTGATCCTAACTGAAATAGATTAAAAGATTACTTTCGTAGAGGAGATGAGAAAGCTGCATAGATAGGGCAAAAGCTCGAATTTGATGTAATATTCATTCATGAGTTCGTCCCTTCTCATGCTTGGGTAGTGCGGTACAGTGAGGCTAATTCTGACTCTAATGCACAAGCAACGTGGACAAACGATTGAGCTAGTAAACGTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTGGTGGAACGTAGCAAATATCTCCTGAAATTAGTCAAGGGGCATACAAAAAACTAGAAAGTCGGGAAAATCATTCGAAAATTTCAGCACACATTAGTAAGCTGCTCCAAGATTACAAACCATGAAAAATAATTCCATAGTTGGCATTCAATACAAGCAGCACATTTAAATCCTGCCATGATAAAGTACATCTAGTGTACAAGTTGGTTCTGGAAAAACTTTCAAAAGCTAAGCAATCAGTTACAACCTGGATACAGTGTTGATCCTAACTGAAATAGATTAAAAGATTACTTTCGTAGAGGAGATGAGAAAGCTGCATAGATAGGGCAAAAGCTCGAATTTGATGTAATATTCATTCATGAGTTCGTCCCTTCTCATGCTTGGGTAGTGCGGTACAGTGAGGCTAATTCTGACTCTAATGCACAAGCAACGTGGACAAACGATTGAGCTAGTAAACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E325216" ref_strand="+" ref_description="SGN-E325216 [cTOC-1-I15]">
      <seq>aaaagagaaaagacagcaaacacaatggattcactagactgggacgcagtgaggtgtgcagatgtcaatgagatatcccataccattagagaacgggggatgaacaatatgctagcagagagaatcaaggatttccttaatcggatttttagagaacatggaagtattgatcttgaatggctgagagacgttccaccagacaaagcaaaagagtatctactaagcatcaggggcttgggcctgaagagcgtagagtgtgtgcgacttttaacacttcacaaccttgcttttccggtcgacacaaatgttgggcgtatagctgttagactgggatgggtgcccctgcagccactgccagagtcactacaattgcatcttctggaattgtaccctgtgctggagtcaattcaaaaatacctctggccacgtctctgcaagcttgatcaaagaacattatatgagttgcattaccatatgatcacttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="40270" stop="42019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40570" g_stop="40698" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40699" i_stop="40822" i_length="124">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40823" g_stop="40902" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="209" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40903" i_stop="40988" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40989" g_stop="41073" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="294" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41074" i_stop="41153" i_length="80">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41154" g_stop="41245" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="386" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41246" i_stop="41320" i_length="75">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41321" g_stop="41389" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="455" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41390" i_stop="41686" i_length="297">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41687" g_stop="41719" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="488" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E325216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40570" e_stop="40698"/>
          <exon e_start="40823" e_stop="40902"/>
          <exon e_start="40989" e_stop="41073"/>
          <exon e_start="41154" e_stop="41245"/>
          <exon e_start="41321" e_stop="41389"/>
          <exon e_start="41687" e_stop="41719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAAAAGACAGCAAACACAATGGATTCACTAGACTGGGACGCAGTGAGGTGTGCAGATGTCAATGAGATATCCCATACCATTAGAGAACGGGGGATGAACAATATGCTAGCAGAGAGAATCAAGGTACATCAGTGAAAATTGCAATTAACAGCCTAATTGTTTTAAAATCTGGATACCTCCATTATTCATCTACCAAAGTAATTCCCTAACCTTAAGAGACTGTTCAATGGAAACTGAACAATTGCAGGATTTCCTTAATCGGATTTTTAGAGAACATGGAAGTATTGATCTTGAATGGCTGAGAGACGTTCCACCAGACAAAGCAAAGTAAGCTTTCAATTGACCAAATAATTTCTTCCATGTTTTATCTATTCCTCTGCACTGACTAAACAAATTCACATGCATGGTATCAGAGAGTATCTACTAAGCATCAGGGGCTTGGGCCTGAAGAGCGTAGAGTGTGTGCGACTTTTAACACTTCACAACCTTGCTTTTCCGGTAAGATTTCTGAACCAATTATTGAAGACATAATTAATATGAAATGACCCGTGTTTCTCACTAATCATGTCTTTTATAAGGTCGACACAAATGTTGGGCGTATAGCTGTTAGACTGGGATGGGTGCCCCTGCAGCCACTGCCAGAGTCACTACAATTGCATCTTCTGGAATTGTGAGTATCTTGTGTAGTGTGTATATAAAGAATTTCCAAAATTGCCTACACAGTCTAACTCTGCTATTTCTTCAGGTACCCTGTGCTGGAGTCAATTCAAAAATACCTCTGGCCACGTCTCTGCAAGCTTGATCAAAGAACATTGTAAGTAACATCCTATTCTCTATCATTTTGCCCAGCCTGGTTGACAAGCATCAATTTACTATTAAATGTAAGTGGTTCCATTTCATCTTATTGAAACATCCAATTGTAACAGTATACTGCATAGTGGATGAAAAGATTTTGATTTTAAGGAAGTGCAGAGGGACTTGTAGATTAGGGTAGTTGATTTCTTCAAAGGGAGAAAAAATAATATACGTGCATAGTACTTGTAACTAAAAAAGATATTTTTTCTTCTAATAAAGCAATGCATTTACTGATTCAAATCCTACTTGATTACAGATATGAGTTGCATTACCATATGATCACTTTTGG</genome_strand>
        <mrna_strand>AAAAGAGAAAAGACAGCAAACACAATGGATTCACTAGACTGGGACGCAGTGAGGTGTGCAGATGTCAATGAGATATCCCATACCATTAGAGAACGGGGGATGAACAATATGCTAGCAGAGAGAATCAAG............................................................................................................................GATTTCCTTAATCGGATTTTTAGAGAACATGGAAGTATTGATCTTGAATGGCTGAGAGACGTTCCACCAGACAAAGCAAA......................................................................................AGAGTATCTACTAAGCATCAGGGGCTTGGGCCTGAAGAGCGTAGAGTGTGTGCGACTTTTAACACTTCACAACCTTGCTTTTCCG................................................................................GTCGACACAAATGTTGGGCGTATAGCTGTTAGACTGGGATGGGTGCCCCTGCAGCCACTGCCAGAGTCACTACAATTGCATCTTCTGGAATT...........................................................................GTACCCTGTGCTGGAGTCAATTCAAAAATACCTCTGGCCACGTCTCTGCAAGCTTGATCAAAGAACATT.........................................................................................................................................................................................................................................................................................................ATATGAGTTGCATTACCATATGATCACTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E293319" ref_strand="+" ref_description="SGN-E293319 [cLET-18-N19]">
      <seq>agcaaacacaatggattcactagactgggacgcagtgaggtgtgcagatgtcaatgagatatcccataccattagagaacgggggatgaacaatatgctagcagagagaatcaaggatttccttaatcggatttttagagaacatggaagtattgatcttgaatggctgagagacgttccaccagacaaagcaaaagagtatctactaagcatcaggggcttgggcctgaagagcgtagagtgtgtgcgacttttaacacttcacaaccttgcttttccggtcgacacagatgttgggcgtatagctgttagactgggatgggtgcccctgcagccactgccagagtcactacaattgcatcttgtggaattgtaccctgtgctggagtcaattcaaaaatacctctggccacgtctctgcaagcttgatcaaagaacattatatgagttgcattaccatatgatcacttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="40284" stop="42019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40584" g_stop="40698" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40699" i_stop="40822" i_length="124">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40823" g_stop="40902" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="195" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40903" i_stop="40988" i_length="86">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40989" g_stop="41073" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="280" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41074" i_stop="41153" i_length="80">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41154" g_stop="41245" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="372" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41246" i_stop="41320" i_length="75">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41321" g_stop="41389" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="441" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41390" i_stop="41686" i_length="297">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41687" g_stop="41719" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="474" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E293319" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40584" e_stop="40698"/>
          <exon e_start="40823" e_stop="40902"/>
          <exon e_start="40989" e_stop="41073"/>
          <exon e_start="41154" e_stop="41245"/>
          <exon e_start="41321" e_stop="41389"/>
          <exon e_start="41687" e_stop="41719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAACACAATGGATTCACTAGACTGGGACGCAGTGAGGTGTGCAGATGTCAATGAGATATCCCATACCATTAGAGAACGGGGGATGAACAATATGCTAGCAGAGAGAATCAAGGTACATCAGTGAAAATTGCAATTAACAGCCTAATTGTTTTAAAATCTGGATACCTCCATTATTCATCTACCAAAGTAATTCCCTAACCTTAAGAGACTGTTCAATGGAAACTGAACAATTGCAGGATTTCCTTAATCGGATTTTTAGAGAACATGGAAGTATTGATCTTGAATGGCTGAGAGACGTTCCACCAGACAAAGCAAAGTAAGCTTTCAATTGACCAAATAATTTCTTCCATGTTTTATCTATTCCTCTGCACTGACTAAACAAATTCACATGCATGGTATCAGAGAGTATCTACTAAGCATCAGGGGCTTGGGCCTGAAGAGCGTAGAGTGTGTGCGACTTTTAACACTTCACAACCTTGCTTTTCCGGTAAGATTTCTGAACCAATTATTGAAGACATAATTAATATGAAATGACCCGTGTTTCTCACTAATCATGTCTTTTATAAGGTCGACACAAATGTTGGGCGTATAGCTGTTAGACTGGGATGGGTGCCCCTGCAGCCACTGCCAGAGTCACTACAATTGCATCTTCTGGAATTGTGAGTATCTTGTGTAGTGTGTATATAAAGAATTTCCAAAATTGCCTACACAGTCTAACTCTGCTATTTCTTCAGGTACCCTGTGCTGGAGTCAATTCAAAAATACCTCTGGCCACGTCTCTGCAAGCTTGATCAAAGAACATTGTAAGTAACATCCTATTCTCTATCATTTTGCCCAGCCTGGTTGACAAGCATCAATTTACTATTAAATGTAAGTGGTTCCATTTCATCTTATTGAAACATCCAATTGTAACAGTATACTGCATAGTGGATGAAAAGATTTTGATTTTAAGGAAGTGCAGAGGGACTTGTAGATTAGGGTAGTTGATTTCTTCAAAGGGAGAAAAAATAATATACGTGCATAGTACTTGTAACTAAAAAAGATATTTTTTCTTCTAATAAAGCAATGCATTTACTGATTCAAATCCTACTTGATTACAGATATGAGTTGCATTACCATATGATCACTTTTGG</genome_strand>
        <mrna_strand>AGCAAACACAATGGATTCACTAGACTGGGACGCAGTGAGGTGTGCAGATGTCAATGAGATATCCCATACCATTAGAGAACGGGGGATGAACAATATGCTAGCAGAGAGAATCAAG............................................................................................................................GATTTCCTTAATCGGATTTTTAGAGAACATGGAAGTATTGATCTTGAATGGCTGAGAGACGTTCCACCAGACAAAGCAAA......................................................................................AGAGTATCTACTAAGCATCAGGGGCTTGGGCCTGAAGAGCGTAGAGTGTGTGCGACTTTTAACACTTCACAACCTTGCTTTTCCG................................................................................GTCGACACAGATGTTGGGCGTATAGCTGTTAGACTGGGATGGGTGCCCCTGCAGCCACTGCCAGAGTCACTACAATTGCATCTTGTGGAATT...........................................................................GTACCCTGTGCTGGAGTCAATTCAAAAATACCTCTGGCCACGTCTCTGCAAGCTTGATCAAAGAACATT.........................................................................................................................................................................................................................................................................................................ATATGAGTTGCATTACCATATGATCACTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E553964" ref_strand="+" ref_description="SGN-E553964 [cTSC-2-M21]">
      <seq>tggatcccccgggctgcaggttagactgggatgggtgcccctgcagccactgccagagtcactacaattgcatcttctggaattgtaccctgtgctggagtcaattcaaaaatacctctggccacgtctctgcaagcttgatcaaagaacattatatgagttgcattaccatatgatcacttttggaaaggtcttctgttcaaaaagcaaacccaactgcaacgcatgtccaatgagaggagaatgcagacacttcgcaagtgcttttgcaagcgcaaggcttgccctgccagcaccagaagagaaaagtatagtgagtgcaacagagaacaatgcagctgaccagaatccattccagaacttcaatcaacagccgctaaccttaccccaggctaatcaaacacctttagagcatcccaaattgatcaactccgcacctattattgaggtgccagcaacaccacagcccattgtcgaagagcctgcctcacctgagccagagcaagatgctcccgaaatcgacattgaagatgtttgctttgaagatcctgatgaaattcctacaattgaattgaatatggcgcagttcactcaaaatgtgaagaactttgtgcaaaacaatatggagcttcaacaggtcgaaatgtcaaaagccttagtagctttaactccagcagctgcttcaattcctacacctaaacttaagcatataagccggctcagaactgaacatcaagtatatgaacttccagattctcatcctcttcttgaagggttcgagaaaagagaaccagatgatccatcctcctatcttctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="40881" stop="43425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41179" g_stop="41245" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="84" r_length="67" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41246" i_stop="41320" i_length="75">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41321" g_stop="41389" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="153" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41390" i_stop="41686" i_length="297">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41687" g_stop="41723" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="190" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41724" i_stop="41806" i_length="83">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.470" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41807" g_stop="41889" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="273" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41890" i_stop="42332" i_length="443">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42333" g_stop="42797" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="738" r_length="465" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42798" i_stop="42924" i_length="127">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42925" g_stop="42961" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="775" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42962" i_stop="43081" i_length="120">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43082" g_stop="43125" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="819" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E553964" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41179" e_stop="41245"/>
          <exon e_start="41321" e_stop="41389"/>
          <exon e_start="41687" e_stop="41723"/>
          <exon e_start="41807" e_stop="41889"/>
          <exon e_start="42333" e_stop="42797"/>
          <exon e_start="42925" e_stop="42961"/>
          <exon e_start="43082" e_stop="43125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTAGACTGGGATGGGTGCCCCTGCAGCCACTGCCAGAGTCACTACAATTGCATCTTCTGGAATTGTGAGTATCTTGTGTAGTGTGTATATAAAGAATTTCCAAAATTGCCTACACAGTCTAACTCTGCTATTTCTTCAGGTACCCTGTGCTGGAGTCAATTCAAAAATACCTCTGGCCACGTCTCTGCAAGCTTGATCAAAGAACATTGTAAGTAACATCCTATTCTCTATCATTTTGCCCAGCCTGGTTGACAAGCATCAATTTACTATTAAATGTAAGTGGTTCCATTTCATCTTATTGAAACATCCAATTGTAACAGTATACTGCATAGTGGATGAAAAGATTTTGATTTTAAGGAAGTGCAGAGGGACTTGTAGATTAGGGTAGTTGATTTCTTCAAAGGGAGAAAAAATAATATACGTGCATAGTACTTGTAACTAAAAAAGATATTTTTTCTTCTAATAAAGCAATGCATTTACTGATTCAAATCCTACTTGATTACAGATATGAGTTGCATTACCATATGATCACTTTTGGAAAGGTATGTCTATACCACTAGTTACTCTCCCCTAGAACTAGCATCTGCAATCACAGTTTAAATCAATTTCATGGCTACTTCATTAGGTCTTCTGTTCAAAAAGCAAACCCAACTGCAACGCATGTCCAATGAGAGGAGAATGCAGACACTTCGCAAGTGCTTTTGCAAGGTTTGCCTATTATTCTATATACTTTCATGCAAGAAATTAGTTCTCTTGTTTGTCTATCTTTATTGCTTCTTCTCAAGCTTCTCGACATCTAATCCAAAGAACCATATCCAGAATGTGGCTGCTGAAACTAGATTTGACAAATCTATTTACTCTTACTCAGACAACATAAAATTTGCACTTAAGCTAACCTGGTAGTGTTTTCACTCATCCATGAAGCGTATGACATACTGTCAGTCACTCAGTGATGAAGCAACTCTAGCAGAAACTTTGAAATTCACGGATCTCTTCTTGTATAAGATAGAACTCCTACATTTTCAAACTTAAGCTAATACCCTTCTTGTTAGCACATTCAAGTAATGCATTCTAACTAGATTAGTAATTTCATAGTCTAAAATTGAAGCACTGTTTTTTCATATATGATACTTGACACATTTCTCTTTCAGCGCAAGGCTTGCCCTGCCAGCACCAGAAGAGAAAAGTATAGTGAGTGCAACAGAGAACAATGCAGCTGACCAGAATCCATTCCAGAACTTCAATCAACAGCCGCTAACCTTACCCCAGGCTAATCAAACACCTTTAGAGCATCCCAAATTGATCAACTCCGCACCTATTATTGAGGTGCCAGCAACACCACAGCCCATTGTCGAAGAGCCTGCCTCACCTGAGCCAGAGCAAGATGCTCCCGAAATCGACATTGAAGATGTTTGCTTTGAAGATCCTGATGAAATTCCTACAATTGAATTGAATATGGCGCAGTTCACTCAAAATGTGAAGAACTTTGTGCAAAACAATATGGAGCTTCAACAGGTCGAAATGTCAAAAGCCTTAGTAGCTTTAACTCCAGCAGCTGCTTCAATTCCTACACCTAAACTTAAGCATATAAGCCGGCTCAGAACTGAACATCAAGTGTAAGTGGATGCTCCAAATAACTTCTGATAGATCGCCAATGCAGTAGGGTAGCCAATTTTTTCCTAGGCTATAAAATTCTCGTAAATTTGTTTTTTTGCTTACTATCAATTGTTTCTCCACCCACAGATATGAACTTCCAGATTCTCATCCTCTTCTTGAAGGGGTCAGTTTTTCTTTTCTATTTTTGATTGGTTAAATACTAAGTTGTAAATCCATATATAAGCAGCATGTAAGCTTATATTTAAATTGATCCTCCTGATAATTACATCTTTTCATGTTGCAGTTCGAGAAAAGAGAACCAGATGATCCATCCTCCTATCTTCTGGC</genome_strand>
        <mrna_strand>AGGTTAGACTGGGATGGGTGCCCCTGCAGCCACTGCCAGAGTCACTACAATTGCATCTTCTGGAATT...........................................................................GTACCCTGTGCTGGAGTCAATTCAAAAATACCTCTGGCCACGTCTCTGCAAGCTTGATCAAAGAACATT.........................................................................................................................................................................................................................................................................................................ATATGAGTTGCATTACCATATGATCACTTTTGGAAAG...................................................................................GTCTTCTGTTCAAAAAGCAAACCCAACTGCAACGCATGTCCAATGAGAGGAGAATGCAGACACTTCGCAAGTGCTTTTGCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGGCTTGCCCTGCCAGCACCAGAAGAGAAAAGTATAGTGAGTGCAACAGAGAACAATGCAGCTGACCAGAATCCATTCCAGAACTTCAATCAACAGCCGCTAACCTTACCCCAGGCTAATCAAACACCTTTAGAGCATCCCAAATTGATCAACTCCGCACCTATTATTGAGGTGCCAGCAACACCACAGCCCATTGTCGAAGAGCCTGCCTCACCTGAGCCAGAGCAAGATGCTCCCGAAATCGACATTGAAGATGTTTGCTTTGAAGATCCTGATGAAATTCCTACAATTGAATTGAATATGGCGCAGTTCACTCAAAATGTGAAGAACTTTGTGCAAAACAATATGGAGCTTCAACAGGTCGAAATGTCAAAAGCCTTAGTAGCTTTAACTCCAGCAGCTGCTTCAATTCCTACACCTAAACTTAAGCATATAAGCCGGCTCAGAACTGAACATCAAGT...............................................................................................................................ATATGAACTTCCAGATTCTCATCCTCTTCTTGAAGGG........................................................................................................................TTCGAGAAAAGAGAACCAGATGATCCATCCTCCTATCTTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E747472" ref_strand="+" ref_description="SGN-E747472 [GI|40781627]">
      <seq>aagcttataaacgaatcaaattaatatacacatacttttctgacatatttatacatttaatattccgatgtgcttttaagtcaagtgcttactgttcttatgaactcaaatcagtcaaaagtcataagcttatcatctctaagtcgtaatttttcagcttataagcatttttggattgatcggaaacggaagaaagtgaggccaaatgggttgtaagagtaatacttgaaattatatagggaatcatttgaaatatgataaaagtagaggggagtttaatataattaagttaaacttataacttaaagtcgaaaattccaggaatattacgactaaaacaagacttcccccatcttttttttctctcacttctcattcgacaagtacgaagaagaagaagaaaagagagaaaacttttagtgagagaaagtctttgagagagagagggagttgaagctatagtgtaatgaacaatttctagctagggttttgttgaattgataaattattgagatggaaatgtctactagacgatcgaattatactttgttgagtcaagttgcagatgacaattaccttcctccgccaccgaagtactccgtcactggcggtggcggtggaggtggaggagtagcaccgtattatgagtctcattctggtgaaaagggtaaaggcaaaacaggtgataatagaggatttgattgggatttgagtgatcaccgtagtaatatgatgcaagcgtcgaatcggatcggtgcggcggcatttccaggttcgattggcttgcagaggcaatcaagtgggagcagctttggtgaaagttcgatctccggggagtattacatgccgtcgttgtctaatgcggaggcgtcatttggatatctcaatgatggcggtggcggtgctgaagtgaggatgaagccgttggaagctaatttgttcggtggctcgtcttctaagagctgggcgcagcagactgaggagagttatcagctgcagttagctttggctttacggctttcttccgaagctacctgtgctgatgatccaaattttttggatcatgtgcctgatgaatccgcatcccgtgcttcagcttcagctgcttcggcggagaccctttcccatcgattctgggtaaatggatgcttgtcgtactttgacaaagtgcctgatggattttacttgatccatgggatggatccatatgtctggattgtctgctcagatctacaagaaaatgcccgggttccatctattgaatcaatgagagctgttgatccctctgtagtaccatcagttgaagtgattttgattgatcggcgtacggatccaagcttgaaagaactgcagaatcggatccatagtctctctcctacttgtggcacaacaaaagaagttgttgatcagcttgctcagctggtctgcagtcatatggggggcgcaacttctgccggagaagatgagttggttcctttgtggaaggagtgtagttatgagctgaaggattgtctaggatccactgtgcttcccattggtagcctgtctgttggcctttgcaggcatcgagctttgctatttaaagttctagctgacgccattggtttaccatgtcgaattgccaaaggatgtaaatattgtaacagagctgatgcttcctcatgtttagttcgttttggacctgacagggagtacctggttgatttgattgggagccctggatgcttatgcgaaccagattcctcgctcaacggcccatcttctatctcaatctcttcaccattgcgatttccgagattcagagaagttgaaccgacaactgatttcaggtcacttgccaaacagtatttctcggattgtcaatcgcttaatcttgtgtttgaggaatcttcagcaggagctgctgttgatggagacgcaggacaaactgaccgaaataacattgagagaaacagtgctgtcactggtccaagtaaccgtgatgaagtttctcggttacctgtgcctgcaattagggacatggctcctgtgaagtatgtccgtccagttttgcatggagatacacaattatcagacccaagagatatagggaatgatatgcgatttcttgagagaggaagtcaacttgttccctctaaaataagtagagacattgcccttgaaatagaagattttgatataccctgggaagatcttgttctgaaggagaggattggggcagggtcttttggtactgttcaccgtgctgattggaatggttctgatgttgctgtgaagatactcatggaacaagattttcatgcagagcgattcaaggaatttttgcgggaggttgcaattatgaagcggttgcgacacccaaatattgtgctttttatgggtgcagttactcagcgaccaaacttgtccatagttacagaatatttatcaagaggtagcttatatagacttcttcataaacctggtgctagggaggttttggatgaaaggcgtcggttgtctatggcatatgatgtggcaaaggggatgaattatctacataaacgcaatcctcccatcgttcatagagatttgaaatctccaaatcttttagtggacaaaaaatacacagtgaaggtctgtgattttggcctttctcgtttaaaagcgaacacatttctctcgtcaaagtctgctgctgggactccggaatggatggcacctgaagttcttcgtgatgaaccatcaaatgagaaatctgatgtatacagctttggtgttattttgtgggagctggcaacgttgcaacagccttggagtaatttgaacccagcacaggttgtagcagctgtgggctttaaggggaaaagactcgacattccacgtgacttgactcctcaagtggcaagcattatagaggcttgctgggccaaagaaccatggaaacgtccctcctttgctgcaatcatggatatgctgagaccactaattaaacctcctgtaacacctcctcaaccaggccgtacagacacgcagttgattgcgtgaatgcgtgtaatagatgtatgatttctgcacatatttggcattctttgttaatcatcttctgggaggaacaaatctttgtttacttcaggcttttgttccgtacatattagttcagaatgcccgtctagagccattttttttcttcacaaattcaagcagccatttctcccagaagagcatttgcaattgacttgtacgtttcctcgtggaaataatgtctagccatatgattttgttaatgtaagcaaataacagttcttctattttctatcaagaaatgattttgtacgtacaagaatttataatgggaatgcacagttcgtatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="52430" stop="68580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52730" g_stop="53870" g_length="1141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1137" r_length="1137" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53871" i_stop="59631" i_length="5761">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59632" g_stop="59933" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1138" r_stop="1439" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59934" i_stop="60020" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60021" g_stop="60165" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1440" r_stop="1584" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60166" i_stop="60418" i_length="253">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60419" g_stop="60522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1585" r_stop="1688" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60523" i_stop="61785" i_length="1263">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61786" g_stop="61994" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1689" r_stop="1897" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61995" i_stop="63999" i_length="2005">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64000" g_stop="64117" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1898" r_stop="2015" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64118" i_stop="64205" i_length="88">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64206" g_stop="64411" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="2016" r_stop="2221" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64412" i_stop="64551" i_length="140">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64552" g_stop="64592" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="2222" r_stop="2262" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64593" i_stop="64887" i_length="295">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64888" g_stop="64956" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="2263" r_stop="2331" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64957" i_stop="65099" i_length="143">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="65100" g_stop="65200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="2332" r_stop="2432" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="65201" i_stop="65283" i_length="83">
            <donor d_prob="0.353" d_score="1.00"/>
            <acceptor a_prob="0.415" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="65284" g_stop="65368" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="2433" r_stop="2517" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="65369" i_stop="65442" i_length="74">
            <donor d_prob="0.570" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="65443" g_stop="65541" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="2518" r_stop="2616" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="65542" i_stop="66363" i_length="822">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="66364" g_stop="66432" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="2617" r_stop="2685" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="66433" i_stop="66531" i_length="99">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="66532" g_stop="66663" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="2686" r_stop="2817" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="66664" i_stop="67433" i_length="770">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="67434" g_stop="67528" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="2818" r_stop="2912" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="67529" i_stop="67616" i_length="88">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="67617" g_stop="67819" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="2913" r_stop="3115" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="67820" i_stop="68041" i_length="222">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="68042" g_stop="68281" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="3116" r_stop="3355" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="3356" polyA_stop="3371"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E747472" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>3359</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52730" e_stop="53870"/>
          <exon e_start="59632" e_stop="59933"/>
          <exon e_start="60021" e_stop="60165"/>
          <exon e_start="60419" e_stop="60522"/>
          <exon e_start="61786" e_stop="61994"/>
          <exon e_start="64000" e_stop="64117"/>
          <exon e_start="64206" e_stop="64411"/>
          <exon e_start="64552" e_stop="64592"/>
          <exon e_start="64888" e_stop="64956"/>
          <exon e_start="65100" e_stop="65200"/>
          <exon e_start="65284" e_stop="65368"/>
          <exon e_start="65443" e_stop="65541"/>
          <exon e_start="66364" e_stop="66432"/>
          <exon e_start="66532" e_stop="66663"/>
          <exon e_start="67434" e_stop="67528"/>
          <exon e_start="67617" e_stop="67819"/>
          <exon e_start="68042" e_stop="68281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTATAAACGAATCAAATTAATATACACATACTTTTCTGACATATTTATACATTTAATAAAATATCCGATGTGCTTTTAAGTCAAGTGCTTACTGTTCTTATGAACTCAAATCAGTCAAAAGTCATAAGTTTATCATCTCTAAGTCGTAATTTTTCAGCTTATAAGCATTTTTGGATTGATCGGAAACGGAAGAAAGTGAGGCCAAATGGGTTGTAAGAGTAATACTTGAAATTATATAGGGAATCATTTGAAATATGATAAAAGTAGAGGGGAGTTTAATATAATTAAGTTAAACTTATAACTTAAAGTCGAAAATTCCAGGAATATTACGACTAAAACAAGACTTCCCCCATCTTTTTTTTCTCTCACTTCTCATTCGACAAGTACGAAGAAGAAGAAGAAAAGAGAGAAAACTTTTAGTGAGAGAAAGTCTTTGAGAGAGAGAGGGAGTTGAAGCTATAGTGTAATGAACAATTTCTAGCTAGGGTTTTGTTGAATTGATAAATTATTGAGATGGAAATGTCTACTAGACGATCGAATTATACTTTGTTGAGTCAAGTTGCAGATGACAATTACCTTCCTCCGCCACCGAAGTACTCCGTCACTGGCGGTGGCGGTGGAGGTGGAGGAGTAGCACCGTATTATGAGTCTCATTCTGGTGAAAAGGGTAAAGGCAAAACAGGTGATAATAGAGGATTTGATTGGGATTTGAGTGATCACCGTAGTAATATGATGCAAGCGTCGAATCGGATCGGTGCGGCGGCATTTCCAGGTTCGATTGGCTTGCAGAGGCAATCAAGTGGGAGCAGCTTTGGTGAAAGTTCGATCTCCGGGGAGTATTACATGCCGTCGTTGTCTAATGCGGAGGCGTCATTTGGATATCTCAATGATGGCGGTGGCGGTGCTGAAGTGAGGATGAAGCCGTTGGAAGCTAATTTGTTCGGTGGCTCGTCTTCTAAGAGCTGGGCGCAGCAGACTGAGGAGAGTTATCAGCTGCAGTTAGCTTTGGCTTTACGGCTTTCTTCCGAAGCTACCTGTGCTGATGATCCAAATTTTTTGGATCATGTGCCTGATGAATCCGCATCCCGTGCTTCAGCTTCAGCTGCTTCGGCGGAGACCCTTTCCCATCGATTCTGGGTATGGTTGGGTTATTGTTTTGTGTTGATTTTCCTTGTCGTCTATATTTATTTTCTCTGTCAATTGCCTTAATCCAATTATGATTTTAGCTGCAACAGAGGGAAATGTGTTCCTATTATGCTTAAGGTATGTGTTGAATAATTAGCATTGTACACACAAAAAAAATAGCTTGGTTTAGATTACAAATGATTCCAGGCTTTGAATTAGGTAACAGTTTGATGTAAAGGAAATGTTTTCCTTGGATCAACTAGGACTGTTTCGTTGGGTATATGTAGGTGACATAGACTACTTTTAGTCTTGTAGAAGTGGACTATATGGTGTTATGGTAGTGTTTTGGTGATACTTCTGAGTTCTGAGTATTAATAAAGGTTGACAATAATGTAGTAGTGTGGAAAAGTGGGAAAATGACTTCTGTCAAGAAGCAAGGGAAGCCATCTTTTTGTTTGCTGAGAAACTATTTATTGGGTAAGGTGATATTTTCCTGGAAAGTGTTTTCCGTCATACCAAACACAGAATCGACAAATGGATGTGTTCCTTCAAATGTAAGTGCACTGAATCAGTTTTGATAATATTTAAACTACTAGATCCTTTCATAATTTAAAGAAAGATATGTAGCTTCTATATTATTACTGCATCCGGATAGTTCTAGAATACTAGAATATGTCGAGACTAATGCGTCAAGTAATGTGGAGGTCAAGAACAAATTTAATGCTTTTAGTTTCTCAGATGTTTGCGAACATCTCAAGCTACTCTGGAAGTGGAATTGTTGTAGTCGATATAACTGATGCCCATTTTTGTTCTCCACAAAGAAATTGGATGTTTTCTCTATGTAAAGTCTGTATGTCAGTTCTCTTTCTCATTATATAATGCTACACCAATGTGGAATGGGTTCTTTCTAAACCTGCAGTATATAATTAGGGATCATTTGGTAGAGTGTATAAGAATAATTCTAAATAAGGTGTATTGGTATTACTGATATTGGTTATGCTTGCATTAGTTATGCGGAGCTTATGCAGTGTTTAGTTTGGTGTATTAAAAACAACATTCATTGCATATTTCAAAAAAAGTTTTATTTATTACAAAAATACCTTTATTTTGAAAATTGAGAAATCCGTCGGTTACCCGCCGCCATTTGGACAATGGAAAGGATGTGAAGAGATTTTGAGGGGTAATAGTGTCTTTACCCTTGCTAATGTATGCATCAGATCCCTTGACTCTCTGCACTTGATGCACCTACAACTTGAGCACTATTTTATAAGGGAGCTATGTTTACCTGTTCTGACGTGAATTCTTTGCAACAAATTCATATCCTTACTGAAACTGTGATGTCAATGAACTTTCATTTATACATAGTTCAACTAGTAAAACACGTAGAAGTTAATAAATGTCTAAGCCCTTTACTCTATGTTGCTCACACTCTTCGATAATGTCGACGTGTGCGTGTAAGATCCTCCAAAATAGTGTATTTTTGAAGGATACAACACAGGTGCGACACATTTTTGGAGAGTCCGAGCAACCTAGCTTTTACTGTTTTGAAACATTGTATAATGAATCAATGTGTATGACACAAACTATCGAGATTATTCCCTTTATCAGTCTATCATGAGATCCATACTCGTTTTACGTACATCATGTACATATTGATGAAAATGAATCTAAGATCCATTTTCCAGCTAACACACCCTATATCCAAAATAATATTGCAATATGGGAATTAATGCAAAATTTATGACCACTCCAACAATTAGTTAAAAAGAGGATTATAAAAATTCCTTGCAATTGTGTTTTAGTAAAAGAGGTCTAGAAGTAGAATAAATTGATTTGTTTTGAGTTTGAATTTTAATTTTTTAGTATGAAGTAGATCAAACTATATTCATCAAAGAAGATAAAGGATTTTACATTACACGGTTTCACAAGATGTTAAGGGAAATCTTTTGGTTATTGATCAATAATCATGTTTTTCATTATGTGTTAATGAAATCTTTTGCGTACTAACTAAAAAGAAAACATATTTGTGGAAATGGAGAAGAACTAAAGAGTGTAGATAAAAGTTTCTCTTTTGGAGAAGTGGACAAAGGTTTGGATAAGTGAAAAAAGAAGGGGTTTTATTTTCGGATCAGATGAGTAGAAGATATCTACAAATATTATAGTGTATGAGATTGTTTGTTGTTGTATTGCATTTAACACATAAATATTCATTTTTTGGGTGTTGATTGCCTAGGTTAGACTTAGATTAGTTCAAGTCTAATGACATACATATTTCGGGTGTTGATTACCCTTTTGATCGTTTCTCTTATTCCCAAACCTTACAAATGTCGGCAGGAATGTAAGGGTGAAATGAAGTAATTCCATAAAAAATAGATTATAGAAGAAAATGGCTAGAAGACGATTCACTATTTGGCGCCCTAGATAAATATGCAAAGAATCTTGAAGCCGAAGGTCACAAATCACAATTTAAAACAATGTTATTTGTGTGGTAGAAAAAATTGGAAGAACATAGTAAAAATGGAACCCATGTCCAACAACAATAACATACCCAATGTAGTGTAGTCCCACAAGGTGGGATCAGGGGTTAGGGTATATACAAACTTCACCCATATCTCACACATAGAGAGTTGTTCCCGAAAAGACTCCGACTCAGTAACGCATATCAAAGAACATATAGAAGAAAAGTGTTATAACAAGTACTGGAGGAAAAATCAAATGACATATAGGAAAAGAAATAATAACATAAAAAGGTAGTGCAATAATCAAACAACAAGACACAATTGGTAGTAACATAAATCGTAGAATAAAGAATTACGCCAAAAAGTTAATACTACTAGTATTAAAAGAGAAACAAAACGGGGTGCCAAACTACCACCGAGCGTGATCATAGGAAAGCGAGACAACAATCAACTATCTATTAACCTTTTATCCTAGTCAACAACCTCCAAATCCTTCTATTTAAGGTCATGTTCTCGCTGAGCTGAAAATGCGCCATAACTTGTCTAATTACCTCTCCCAATACTTTTTCAGCCTACCTTTACACTTCCTCGAACCCATTATTACCAACTTTCTGCACGTCTCACTAGGCCTCTCCACATACTTGAATCGTCTCTATCTCACTTCTATTCTTGTCCACCACAGTGGCTACTCCGACCTTCTCCTGGATGTCTTCATTCCTAATTTTATTCTTCCTAGTATGTCCACATATCCACCATCACCGATCTCCCCATTTTCTTGGAATAAAGACCTAAGATACATGAACTTTCTTTCCTGGGGATGACTTGCATACCAAGCTTTACTTACACGATAAGTTCTAGTGTTCCAAGCATCATACTATTTGAATGTCTAGTTTTTATTCAGCATGAACTAAATTAGGAGTAGAACTTGTGAATTATATTAAATATCAATTGCGAGCATGTTGAGTTAATAGTCGTCTTTTACTGTGTGGTTAAATTAGGACAGAAGAAGACAAGAAGTGGAATATAACAATTTGTTAAATTACCTTTATGGAAAGAGGAATGTGTAGTTTGATAGAATGTTGAAGTGAGTAAAAATGTGAAATTTTCACATATGAAGTAAAAAGCATATCGAGTTTGTAGCTCCTTTTTACCCTTTGAAATTTAAGATGGATGAAGGTGGAATTATAATAAATAGTTTAACCTCCCCTTTAAGACATTATAAGTTATGTACTAAATTGAATGCTCAGATTAGTGGCTCTATCATAAAGATTAGAACATTCATTCTCTTTCTTCTATTCTATATTAACAGAAGTCTAGACAATGTCCCATACAAAGAAATAATCATTAACTATTGAAAATATTAATATTGTTTTCATCATACGAATGTCAAATATCTACTAACCATAGGCTTGATATTTGACCATGAATCTTGCCAAAACTATTGGCAGCATATAGTAGAAGTATTTGGTAGCGGATTCACAGGTGCCATTGCAAAAAGCAAATGTAATGAAGAGGTGGAAGTTGGGACATTGATGACTTCACATTTTACATGATAAGTTAGGGAGGGCCTTTCTACTCTATCAAAGCAAAAAGACTCGAGAGACGCTTATAATGCCTGTGAAGAACATGTCTCTACCCTCGATCAGTGATCTTGACATCGAGTTTTGGAATAGAGAAACTGTTGGCAAGGAGTGTTACCCCTTTTTGTGGGCCATATGTGAGGTGATTGGTATTCTCATGCCAATGGGTTTTGCATACTAGATGGTTCGACTATTCCATCGAGTACATGCTATTTCCATTTAGCACAAGTATTGAGTAATTTTGTTTAAGGCTTAAGACATGGGCAGATGTGAAGAAATTACTTATCGTCCTTTGTGTCTGCTACTAGGATTTGAATCCTGATCTTTTATGTTTTTCACCCTTGTTGTACTAAATTCAGCGGAGAAACTTTTGGATCTTTGTGGTAATGTGCCAAAACCCTTCGAAAATATTTCCTAATGTTTTTGTTAAATTAGGTCTTAGGCCTAAATCACACTCCAAAAACTAACTCAAAGGGAGTAGGATTGCCCAAGCCTTATAAGGAGTCCACCCATCTCATTAACCATCAATGTGGGGGGTTTTGTTATTCTTTAACACCCCACCTCACGCCCAGTGCTTTGCATTTGGTGCGTGAGCAATTTGATTTTTTGAGCCCCAACATTGGATGAGACGGGCCCTGCTCTGATACCATGTTAAATTAGGTTTAAGGCCTAACTTACACCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCTCAAGCCTTATAAGGAGTCCACCCATCTCATTAACCACCAATCTGTTCATGACAATTATACTTACTAGGCGACAAAATGGATTTCAACTTTATTGATTGCTAGGCCTCACTTGGGTTAGAGAAGAACATGTCATTTTGAGTGGAATAAAAAATCGACGAGCACGTGATAGCTGATACAATATGTATGCGTTGTTTCCTAAGTTCATTGATAGTATCTATGTTAGTATCAATGAAAACCTTGCTTGATAAGAAGAGTTCATTAATAGTATCTCATAAGCCGGTTTTTGTGTATATTTCTAATAAAGATTTTTTTTGACAAAATATTCCTCATAAAGATTTATTTTCCAATACTAGAATCTTTTGCGGAAGTAAGAGTAGAGAGGAAGGACCTAGGTATTGAATTAGAAGCCTCACAAAGGAGCTCTCGATGAGTTCAATTGGTGAAAAAATTTACTCGATTGTCTCAATCGGCTCATTTTGATACAATTTTCTATATCTAGAAGTGTTCGATCTTTCTTGTATCTTGTATTGGAGATATGAATTGATGCATGTAAATGCAGGTGAAGAAATTTATGAGGAAAGGTGCGTTCTTGTTTCATGAAACCTTATTGGTGACCGTTCTTTACTTTTTGATATACTGCTTGTATACATGAATTTTGGTAACATTTTGATAGAATTATTTACGTTATTTGTCCTGCATCAGTCCCTAAAAATGGTAAAAGCATGTTGATCACTTCTTCTGTGTCAGGTGTTTCTGTGCAAATAGGAACAACTAATAAATAGTGTCATTGATGATTTTGAATCTTGTCATTCTAACCAGTCGAGCAAGAGCATTTATTGTTTTCTATTTTTTGGTTATACATTATGTTATCATTTTCTGGCTGCTTATTGATTCTATTTTTTATGTTATGTGTTTATGTTCTTTTAGTCTCTCTTTCTTTGATCGATTCAATCATGCTTTCCAGGCTTCCTAGGTTTTTTGCTGAAAACCATTTTCTGCTTTGAATCGTTGTTCTGTACCAGGTAAATGGATGCTTGTCGTACTTTGACAAAGTGCCTGATGGATTTTACTTGATCCATGGGATGGATCCATATGTCTGGATTGTCTGCTCAGATCTACAAGAAAATGCCCGGGTTCCATCTATTGAATCAATGAGAGCTGTTGATCCCTCTGTAGTACCATCAGTTGAAGTGATTTTGATTGATCGGCGTACGGATCCAAGCTTGAAAGAACTGCAGAATCGGATCCATAGTCTCTCTCCTACTTGTGGCACAACAAAAGAAGTTGTTGATCAGCTTGCTCAGCTGGTCTGCAGTCATATGGGGTAAGTGCCAGAAACTTCTTTTGACTCCGATAAATTACTTTTTTTGTGTGTGTTTTCTCCTTTTTGTAATTAAGTTTTATTTCTTAGGGGCGCAACTTCTGCCGGAGAAGATGAGTTGGTTCCTTTGTGGAAGGAGTGTAGTTATGAGCTGAAGGATTGTCTAGGATCCACTGTGCTTCCCATTGGTAGCCTGTCTGTTGGCCTTTGCAGGCATCGAGCTTTGCTATTTAAAGTATGTTCTAGATGTGATCTACTGATTTTTAGTTTGCTGTTTTATTCTCAAGATTTACTTACACAGGAATTTATGGATCAGCATCTGATGAATGGCGTTCTTTTAAAAAAAACTAAAGAAAAAACATGTTTTTTGCAAATTGTTGTCTTCTCTCCTCTGTCAGAATAAATGTACGTTCAATCAGGAGTTTCTTAGTTTTGGTGGTACGATGGAACATTGATGTGATATCATGAATTTCACATGATTGTTGCAGGTTCTAGCTGACGCCATTGGTTTACCATGTCGAATTGCCAAAGGATGTAAATATTGTAACAGAGCTGATGCTTCCTCATGTTTAGTTCGTTTTGGACCTGACAGGTGCGAATCCAAATTTTAAATAATCTCGGAGTATATTATCATTTCATCCCCAAACTTGCATATTTGAGGAAAATTATTTTGTTAGCCATGTTTGTTTAAATATATAAAGCAATGATAGATGGAAATTGATGTTCCAACTTCCCTTCTGTTTCAAAAACCATTAATATGTATTTTGTTTGTGATAATCAATTTTTCCTTCCCTACTCATATATTCCTGTGCAGTTAACATGTGCAATTTATATGGACTTTGATCGTGTTGCCTATATCTTACCTCGTATTTAGTGTATAATATGGCCAACTTCTGAATTTCTTAATCTTTCTGGTTTAAGCTTTCTTTGAAATGCATAGAGCTAGTATATCTGTAGAAACTGAACTTAATATATTCATGTCTGGGAGATGAGAATGATGATGTTTTGAATATTTTTGTGTGGTCTTTCTGCATTCATGCTGCAAGAGATCTGTAAAGATCAGTCACTGTATGTAGTTCATGACCTATGTTGGTACTTGGTACTAACTGAAGTTTCTCCTTCGTCCTGATAGCTGCTCCTCTTAGTTCTTTTTGTTGTTGGAAAAGCCATATTTATTTTTGGTTTTTACAATATAACTACTGCAACCTCGGTGCCAAAAAGAACGGTGGCACTTCGAGTAAGTGGCACGCTGCATTCAATATGAATTCAGACATGGTTCTCTGAATGGTTTCTAGAGAAAAATTATACATCTAGAGACTGCATAAGGGTACTACATATGAAATTTTTTTAAATGGCTAACATTGTTTTTATAAAAGATTACATAAAACATCGTAATCAAAGAAAAGGTTGTTTGATTCCTCCAAATAGTAATGCTGCCATTCTTTTTGGATCAAAGGAGGAGTATCTTGGGGTGGTGATAGGAATCTTAATATTTGAAAGAACAGATCCCATTATTAAAGGAATACCTTATACACTTGTAATATAATAGATTCTCAATTTCGTGATTGAATTGCAACGAGATGTCCTCCTTTCTTCTGCTCAGCCCTAAAATGTGGAGGAGAAGAAATTAAATGGGGAAAAGTATAAGCAATTAAAATTAGAGATTGTGTAGCGAACAGCAGGATACTATTTTTCTATGCTACTTTCAAGTTTCAACTAGGATTTAGCCTGAAAAAAAATGGCGGTTCTTGTAAAGAAATGCAAGTGTTAGTTCTTCTTTACACAGTTAGATATATGCGATTTCTATTGATTGTTAAAGAGAACAGAGTCTTGATTTTCGCTCTTCACCATATAGGGAGTACCTGGTTGATTTGATTGGGAGCCCTGGATGCTTATGCGAACCAGATTCCTCGCTCAACGGCCCATCTTCTATCTCAATCTCTTCACCATTGCGATTTCCGAGATTCAGAGAAGTTGAACCGACAACTGATTTCAGGTCACTTGCCAAACAGTATTTCTCGGATTGTCAATCGCTTAATCTTGTGTTTGAGGAATCTTCAGCAGGTTATCCTCTAAATCCTACCTGCTTTCATGAGCAAATACATCTTTGCTGCTTGTTTTGGTTGTTTCCCGGATGTTAAGCTTGGTGTCTGCGATATTGTGATGAGAGATGTTCAGTTCACGCATAATTTTATAATGGCTTCAGACAGATGTTTCTCGGTTCCTAGCCAAGAAGAAATATCCTATTTCCTCGTGTTAAATGTTCCTCTATTTTTTTTCATAAAAAAAAGTTTAAATCTTTTATCTTTGGATCTGAAGGGTTATCCTTGGTTTCTCTAAACATATACTAGAAAAACTCAAACCTTATTAGTATTTATGGTATAAGCATTTCCCTAAAAATTTTGGCTGTACTTATTTGTCCTATTTTTGAAGGGCATTCTTTACAACTGGTTTCCCGACTTTTCACTCCCGGGCTTCCCAATTCCCATTACTAGTTGTACTTAAACAAACCTACAAGCATATTTGCTTTCTCAGAATTCACTCACCATTGTCTCTTCTACATGATGTCACTACTATCTGACTGTAATTAAGCTGGAACCTCACTAACCATAAATTTACTTGTACCTACTAAAAAATAAGTAAAATAATAATGGAGATAACAATACAATTGTTTCTTTTCCCTCCTCCATTTTATAGGTTTTGATTTATGGCGACTTAAGTTTTATTTTTCAGCAAAGTGGAAACCAAGAATCTAAGGTTGTAGAAACTTATAAATATATGCCTCAAATCCCAAGGTAGTTGAGGTCTGCTATATGAAACTCACTGTCCATGTTGCTCCCTTAAAGACCAGTCTTAATTCAATTATTTGGGTTTTCTAACACTAGAAGTTCTCTACATTTTTTACTGGCAAAGAAATCTACGTTGAAGGTGTTCCATATTTTGAGGATACATCGTGAAATGAGAAGTTTTGTAGTGGCTGCTAACTTACTAGAACCCTCCTCATTTATTGGGCTTGAGATTGGCAAAGGCGAAGCAGCTATCTATAATATCTGTCTTTCTTCTCTTTTATTGTTTTATTGTCGTTTTATGTTCTATTCGGGGCAACACAGGTTGTGCTCTCCGAAAACATAATTTCAATTTTCTATTCAATTCAAAATTCAAATTGTAGTATGATACTTTTCTGATATCTGATAATTCTATATCGGGAACATATATAAATAATATATATCCGTCTAACAATTTATCTTGGGGGGTTCACATATACTGATAATTGTTGTTATAATTATTATTAATAATTAAAATTGAGAAGGATTTTTTGATTGCAAATATCCATACTGAACTGATTAGTTATATATTATATATCAAGTTGTATTTTGTTATATCATTAGGATCTTTGCTTTTAGAAAGCCAATTTGACCTCTTGTATGGTAAAAGACACCTCTAGATTACACAAGGTCCACATTTGTGAACCTTTGACACCCAGAGGTTTTCTTGGCTAATTCTCTGGTTTACTGTGATGTTTACCAAAAGGTTTGACTCAAATTAATGAAACTAAGATGTTGAGACATTCGTTTTTTTTAAAAATGACTCAACTAACAGAATATATTTCTCATTCTTTTCTAATGTTATTGTATTTTGTTTTCTTTCACAAACTATACTTCATAATTTACTTAGAGAAGTTGATTAGTAGCTGTCTCCCTACCCTGCAGCTGTGAGCTTTTATGATCCTAGTTGCTGTATTCTTCAGCATTGTGGACATGCTGGACACCATAAAAAATGTTATATTAAAAAATAAAAATAGAAAAGAAGATACTAACACAGATCTTAATAAATCTACAAAATGACCTATATTCTCTAAACCTACTTCTTTACACCAAAAGTAGAAAGATATTATACAATTCCATTTAACTTTTCTTAGTCACGTTTAGCATATCTATCTAGTTGCCTTTCCTCTTCCCATACAAATAAATATTATTATCTTGACAAACTAATTCCCTTGATTGTTTCTTGAATTTTATACCCAAACATGTTCTGTTTCAAGGTTCTTAATTAATATTGTTTGTCACAGGAGCTGCTGTTGATGGAGACGCAGGACAAACTGACCGAAATAACATTGAGAGAAACAGTGCTGTCACTGGTCCAAGTAACCGTGATGAAGTTTCTCGGTTACCTGTGCCTGCAATTAGGTAAAACGGTCTTGACGAAGACTGTCAACTTACTATTTACTAGTGTAGATAGTCCTCAAAATATCTTAAACTCAGTTAACATGGACAGGGACATGGCTCCTGTGAAGTATGTCCGTCCAGTTTTGCATGGAGATACACAATTATCAGACCCAAGAGATATAGGGAATGATATGCGATTTCTTGAGAGAGGAAGTCAACTTGTTCCCTCTAAAATAAGTAGAGACATTGCCCTTGAAATAGAAGATTTTGATATACCCTGGGAAGATCTTGTTCTGAAGGAGAGGATTGGGGCAGGTAATCCCTGCCTGCTATCTTTTGTATCCTCATTTTTAGTCTCGTGCTATGATTGTCTCAGTACATGTTAGTGATATTGGGATGCTAGAGTATCATAGCATCCTCTTCTCATGTACCTAACACTGATTGTTGCATCTCAGGGTCTTTTGGTACTGTTCACCGTGCTGATTGGAATGGTTCTGTAAGACATCTCCTTTTAGTTCTGCATCCTTGATACTCGTTTTTGTTATATCAGTTAACTCATTTAGCACTTCGGAGAAGCATTTATTCAGTGTAATTTTTGTAAATGATTTGGGTGTTTATTTATTTCTATTTTGTTTTTGGCCTGATCCACTTCTCGAATAAATGTTGTTGGTTTATCTGTTGATCTCTCTCTTTTGTTTTCCTTATTTGAGATTATCTTTCTGAATTACCCTGTCTCGTTTGGTTTTATTCCTTCATAATTGCATGCTGATGGAAGTTTCAAATTACTTTAGGATGTTGCTGTGAAGATACTCATGGAACAAGATTTTCATGCAGAGCGATTCAAGGAATTTTTGCGGGAGGTAACTCTCATTTCCCTATCTCCTCAACTATTGATAAGCAAACTGGATAAAAGAGAGAAAATGAGGATGGGTGAATGCCAGTTTTATTGTTTATTTTCCTTAGACCAATTGCACTAATCCGACCTTCCTTCCGTTTTGTTTAGGTTGCAATTATGAAGCGGTTGCGACACCCAAATATTGTGCTTTTTATGGGTGCAGTTACTCAGCGACCAAACTTGTCCATAGTTACAGAATATTTATCAAGGTTTTATCTTGGCAAACCCTACAGTAATCGGACTTTTGATTTTTCAGTCTAGCTAACAGTGCCCATGTTGCAATGTATTTCAGAGGTAGCTTATATAGACTTCTTCATAAACCTGGTGCTAGGGAGGTTTTGGATGAAAGGTGTCGGTTGTCTATGGCATATGATGTGGTATGAATACGTCCCCGCTCTGCCTCATTTTATTTTGAATCTGGGGCTCATCTCCTTATATCATATTGGTGCAGGCAAAGGGGATGAATTATCTACATAAACGCAATCCTCCCATCGTTCATAGAGATTTGAAATCTCCAAATCTTTTAGTGGACAAAAAATACACAGTGAAGGTGAGAATAATTTCCTTTTCAGCACATGTTAAAATTGCAATCCATCTTTTCTCTATTGATACAGTTCTTGACTTGCGCTATCAGAGTCGTTTAAAGGAGAGAAAAATGGAGAGGATGTCTTAGTGTCAAAAACTTGTATACTTATGCATAATTATTGGAGAACAAAAAAGGAAGTTTGGAGGGATAAAGCTTATGTCAGATTTCTCAGATAATGGAGAACTAACGGCGTGTAATGTTGTGGGGAGGATTAAATTGCAACAGACAGCATATATCTTGAAGATTGTACATTATACTTCTGGTTTTGTAGGCCCGTGCGAGTCAGAGGTTTCTTTTGTCATCCGAATGGACATTGACCATCTGGAATCGTGGTAATTCAATGTCCACGTGGCAAGGATGCTGGTATTTGTTTATCTAGCGCCATGTTGATGTACTGGACACCTATCATAACTTCTTTTTTATGTTCTGGATGCAGCATCTCAAGATATTAAAACTCTATGAGGGGGAAGGTTTTTAGTATATTTTAGTTTTACTATTTAGATTAGTGTGAGATACAGGAAACTTCTAGTCCTAGAAAAGCCCTTAATTTGCGTCAACAGACATTATATTGTGTCTACAATGCTTATGCTGACAATACAACGTAAGCTCTGCATCTGATCTGACTCTACTGCATTCTGGAACAAGTCTTAATGAAAGTTGTTTATGATAGATAATTGAGTTCTGTTATGGTGTTTCTCTATGCATATTTTGTGCTCTTATATTATTAAAACCTTCTCTTTATGCAAAGATGTTGAATGTCCCCGGCCTGTCTGATGTCTTCGTCAGGTCTGTGATTTTGGCCTTTCTCGTTTAAAAGCGAACACATTTCTCTCGTCAAAGTCTGCTGCTGGGACTGTAAGTGCCTGATTCAACATATGATTTGTTCAACTTCCGCTCGTCTTTTTCTCTTCACGTCATCGATGCATTTTTTTAACTGGTTCTTCTTGTGAATAGCCGGAATGGATGGCACCTGAAGTTCTTCGTGATGAACCATCAAATGAGAAATCTGATGTATACAGCTTTGGTGTTATTTTGTGGGAGCTGGCAACGTTGCAACAGCCTTGGAGTAATTTGAACCCAGCACAGGTTTGTATTTCTTATCTCTATGCTCTATTGTCCCGGGGGTGGGGGGTGGGGGGGAGAGGGGGAGCCCATTCTTATGTAAATGTAAAATCTGGAGAATGGGCTATGTCTGGAGCCATTCAATTTTGTGTCAGGAGTTGACTAAAGTCTTTGTTTCTGTTTATGTCTGGTAGACTCATACCAGGGGATGGAGAACAATCCGATTTGCTTCAGCAATTCTCTGAAGAGTCATTTATTCCTCATTTTATATACCTCTCTTCTCCATTTGGTTTAGGGAGAGAGCTAGTCATTCATTGGGCATTGAATGTCGATGTCAATGTTATAAAGATTCTTCATGCTTTGATTAGTATTCTCATATCAGCTTCTTTATAGCAAAGATCTTTCTCTGACGAAGATACAGTCAATTAAGAAATGTGGATAAAACGATATCAATCGCATGGAAGATATTTCTATAAGTTCCCTCTTTTGATTTCCGAATTTCTGATATTTCTCTTTGATTAAAAACCAGGGAGGGCACTCAATCTTGTCTTGGTATCTAGGTGGCAACACCTTTATGATACCTCTGATTGAAAACATTGATTTAATACTAGAAAGACAACTTGGATAATTTGCAACACTACTTGGCACTTGTATTGCATCTTGGCTATATTTTAAAACGGAACATATGCATTGTTATCTTTATTGGTATGCTCGTTGTTAAGAGATGAGATAAGAGGGGGTGTGATATCGATTCTTGTGAATTCTGTATTGGTTAAATGCATCTAAACCTGCAGGTTGTAGCAGCTGTGAGCTTTAAGGGGAAAAGACTCGACATTCCACGTGACTTGACTCCTCAAGTGGCAAGCATTATAGAGGCTTGCTGGGCCAAGTATGTTGCTATGTTCTTCCATAGTTCAGTCACATGGGTTTTGGTTTGCTTTGATGTGTACTTCAAGTTACTTTTGGTAATGTTGCAGAGAACCATGGAAACGTCCCTCCTTTGCTGCAATCATGGATATGCTGAGACCACTAATTAAACCTCCTGTAACACCTCCTCAACCAGGCCGTACAGACACGCAGTTGATTGCGTGAATGCGTGTAATAGATGTATGATTTCTGCACATATTTGGCATTCTTTGTTAATCATCTTCTGGGAGGAACAAATCTTTGTTTACTTCAGGTTCGTGTATCCTGAAGTCTCTCTCTTCCTTCTGCTTAAATTTTACATTTGTCTTGATGTACACATGTTACTCCAACTTAAGTCGAAGTTGGAAGTGTTGGTGATTGTTTCGACTTTCTGACTTCAACTTGGCAGATGTGAAGAGGGTTCACCTCTTAGCTTCCTATGCTGTTTCGTTTGATAGTATGTGAGCTTGTAACAACCTTTTTTTTTTATTTACAGGCTTTTGTTCCGTACATATTAGTTCAGAATGCCCGTCTAGAGCCATTTTTTTTCTTCACAAATTCAAGCAGCCATTTCTCCCAGAAGAGCATTTGCAATTGACTTGTACGTTTCCTCGTGGAAATAATGTCTAGCCATATGATTTTGTTAATGTAAGCAAATAACAGTTCTTCTATTTTCTATCAAGAAATGATTTTGTACGTACAAGAATTTATAATGGGAATGCACAGTTCGTATCAC</genome_strand>
        <mrna_strand>AAGCTTATAAACGAATCAAATTAATATACACATACTTTTCTGACATATTTATACATTTAAT---AT-TCCGATGTGCTTTTAAGTCAAGTGCTTACTGTTCTTATGAACTCAAATCAGTCAAAAGTCATAAGCTTATCATCTCTAAGTCGTAATTTTTCAGCTTATAAGCATTTTTGGATTGATCGGAAACGGAAGAAAGTGAGGCCAAATGGGTTGTAAGAGTAATACTTGAAATTATATAGGGAATCATTTGAAATATGATAAAAGTAGAGGGGAGTTTAATATAATTAAGTTAAACTTATAACTTAAAGTCGAAAATTCCAGGAATATTACGACTAAAACAAGACTTCCCCCATCTTTTTTTTCTCTCACTTCTCATTCGACAAGTACGAAGAAGAAGAAGAAAAGAGAGAAAACTTTTAGTGAGAGAAAGTCTTTGAGAGAGAGAGGGAGTTGAAGCTATAGTGTAATGAACAATTTCTAGCTAGGGTTTTGTTGAATTGATAAATTATTGAGATGGAAATGTCTACTAGACGATCGAATTATACTTTGTTGAGTCAAGTTGCAGATGACAATTACCTTCCTCCGCCACCGAAGTACTCCGTCACTGGCGGTGGCGGTGGAGGTGGAGGAGTAGCACCGTATTATGAGTCTCATTCTGGTGAAAAGGGTAAAGGCAAAACAGGTGATAATAGAGGATTTGATTGGGATTTGAGTGATCACCGTAGTAATATGATGCAAGCGTCGAATCGGATCGGTGCGGCGGCATTTCCAGGTTCGATTGGCTTGCAGAGGCAATCAAGTGGGAGCAGCTTTGGTGAAAGTTCGATCTCCGGGGAGTATTACATGCCGTCGTTGTCTAATGCGGAGGCGTCATTTGGATATCTCAATGATGGCGGTGGCGGTGCTGAAGTGAGGATGAAGCCGTTGGAAGCTAATTTGTTCGGTGGCTCGTCTTCTAAGAGCTGGGCGCAGCAGACTGAGGAGAGTTATCAGCTGCAGTTAGCTTTGGCTTTACGGCTTTCTTCCGAAGCTACCTGTGCTGATGATCCAAATTTTTTGGATCATGTGCCTGATGAATCCGCATCCCGTGCTTCAGCTTCAGCTGCTTCGGCGGAGACCCTTTCCCATCGATTCTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGATGCTTGTCGTACTTTGACAAAGTGCCTGATGGATTTTACTTGATCCATGGGATGGATCCATATGTCTGGATTGTCTGCTCAGATCTACAAGAAAATGCCCGGGTTCCATCTATTGAATCAATGAGAGCTGTTGATCCCTCTGTAGTACCATCAGTTGAAGTGATTTTGATTGATCGGCGTACGGATCCAAGCTTGAAAGAACTGCAGAATCGGATCCATAGTCTCTCTCCTACTTGTGGCACAACAAAAGAAGTTGTTGATCAGCTTGCTCAGCTGGTCTGCAGTCATATGGG.......................................................................................GGGCGCAACTTCTGCCGGAGAAGATGAGTTGGTTCCTTTGTGGAAGGAGTGTAGTTATGAGCTGAAGGATTGTCTAGGATCCACTGTGCTTCCCATTGGTAGCCTGTCTGTTGGCCTTTGCAGGCATCGAGCTTTGCTATTTAAA.............................................................................................................................................................................................................................................................GTTCTAGCTGACGCCATTGGTTTACCATGTCGAATTGCCAAAGGATGTAAATATTGTAACAGAGCTGATGCTTCCTCATGTTTAGTTCGTTTTGGACCTGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACCTGGTTGATTTGATTGGGAGCCCTGGATGCTTATGCGAACCAGATTCCTCGCTCAACGGCCCATCTTCTATCTCAATCTCTTCACCATTGCGATTTCCGAGATTCAGAGAAGTTGAACCGACAACTGATTTCAGGTCACTTGCCAAACAGTATTTCTCGGATTGTCAATCGCTTAATCTTGTGTTTGAGGAATCTTCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTGTTGATGGAGACGCAGGACAAACTGACCGAAATAACATTGAGAGAAACAGTGCTGTCACTGGTCCAAGTAACCGTGATGAAGTTTCTCGGTTACCTGTGCCTGCAATTAG........................................................................................GGACATGGCTCCTGTGAAGTATGTCCGTCCAGTTTTGCATGGAGATACACAATTATCAGACCCAAGAGATATAGGGAATGATATGCGATTTCTTGAGAGAGGAAGTCAACTTGTTCCCTCTAAAATAAGTAGAGACATTGCCCTTGAAATAGAAGATTTTGATATACCCTGGGAAGATCTTGTTCTGAAGGAGAGGATTGGGGCAG............................................................................................................................................GGTCTTTTGGTACTGTTCACCGTGCTGATTGGAATGGTTCT.......................................................................................................................................................................................................................................................................................................GATGTTGCTGTGAAGATACTCATGGAACAAGATTTTCATGCAGAGCGATTCAAGGAATTTTTGCGGGAG...............................................................................................................................................GTTGCAATTATGAAGCGGTTGCGACACCCAAATATTGTGCTTTTTATGGGTGCAGTTACTCAGCGACCAAACTTGTCCATAGTTACAGAATATTTATCAAG...................................................................................AGGTAGCTTATATAGACTTCTTCATAAACCTGGTGCTAGGGAGGTTTTGGATGAAAGGCGTCGGTTGTCTATGGCATATGATGTG..........................................................................GCAAAGGGGATGAATTATCTACATAAACGCAATCCTCCCATCGTTCATAGAGATTTGAAATCTCCAAATCTTTTAGTGGACAAAAAATACACAGTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGATTTTGGCCTTTCTCGTTTAAAAGCGAACACATTTCTCTCGTCAAAGTCTGCTGCTGGGACT...................................................................................................CCGGAATGGATGGCACCTGAAGTTCTTCGTGATGAACCATCAAATGAGAAATCTGATGTATACAGCTTTGGTGTTATTTTGTGGGAGCTGGCAACGTTGCAACAGCCTTGGAGTAATTTGAACCCAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAGCAGCTGTGGGCTTTAAGGGGAAAAGACTCGACATTCCACGTGACTTGACTCCTCAAGTGGCAAGCATTATAGAGGCTTGCTGGGCCAA........................................................................................AGAACCATGGAAACGTCCCTCCTTTGCTGCAATCATGGATATGCTGAGACCACTAATTAAACCTCCTGTAACACCTCCTCAACCAGGCCGTACAGACACGCAGTTGATTGCGTGAATGCGTGTAATAGATGTATGATTTCTGCACATATTTGGCATTCTTTGTTAATCATCTTCTGGGAGGAACAAATCTTTGTTTACTTCAG..............................................................................................................................................................................................................................GCTTTTGTTCCGTACATATTAGTTCAGAATGCCCGTCTAGAGCCATTTTTTTTCTTCACAAATTCAAGCAGCCATTTCTCCCAGAAGAGCATTTGCAATTGACTTGTACGTTTCCTCGTGGAAATAATGTCTAGCCATATGATTTTGTTAATGTAAGCAAATAACAGTTCTTCTATTTTCTATCAAGAAATGATTTTGTACGTACAAGAATTTATAATGGGAATGCACAGTTCGTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E745183" ref_strand="+" ref_description="SGN-E745183 [GI|47105945]">
      <seq>gacttctcattcgacaagtacgaagaagaagaagaaaagagagaaaacttttagtgagagaaagtctttgagagagagagggagttgaagctatagtgtaatgaacaatttctagctagggttttgttgaattgataaattattgagatggaaatgtctactagacgatcgaattatactttgttgagtcaagttgcagatgacaattaccttcctccgccaccgaagtactccgtcactggcggtggcggtggaggtggaggagtagcaccgtattatgagtctcattctggtgaaaagggtaaaggcaaaacaggtgataatagaggatttgattgggatttgagtgatcaccgtagtaatatgatgcaagcgtcgaatcggatcggtgcggcggcatttccaggttcgattggcttgcagaggcaatcaagtgggagcagctttggtgaaagttcgatctccggggagtattacatgccgtcgttgtctaatgcggaggcgtcatttggatatctcaatgatggcggtggcggtgctgaagtgaggatgaagccgttggaagctaatttgttcggtggctcgtcttctaagactgggcgcagcagactgaggagagttatcagctgcagttagctttggctttacggctttcttccgaagctacctgtgctgatgatccaaattttttggatcatgtgcctgatgaatccgcatcccgtgcttcagcttcagctgcttcggcggagaccctttcccatcgattctgggtaaatggatgcttgtcgtactttgacaaagtgcctgatggattttacttgatccatgggatggatccatatgtctggattgtctgctcagatctacaagaaaatgcccgggttccatctattgaatcaatgagagctgttgatccctctgtagtaccatcagttgaagtgattttgattgatcggcgtacggatccaagcttgaaagaactgcagaatcggatccatagtctctctcctacttgtggcacaacaaaagaagttgttgatcagcttgctcagctggtctgcagtcatatggggggcgcaacttctgccggagaagatgagttggttcctttgtggaaggagtgtagttatgagctgaaggattgtctaggatccactgtgcttcccattggtagcctgtctgttggcctttgcaggcatcgagctttgctatttaaagttctagctgacgccattggtttaccatgtcgaattgccaaaggatgtaaatattgtaacagagctgatgcttcctcatgtttagttcgttttggacctgacagggagtacctggttgatttgattgggagccctggatgcttatgcgaaccagattcctcgctcaacggcccatcttctatctcaatctcttcaccattgcgatttccgagattcagagaagttgaaccgacaactgatttcaggtcacttgccaaacagtatttctcggattgtcaatcgcttaatcttgtgtttgaggaatcttcagcgggagctgctgttgatggagacgcaggacaaactgaccgaaataacattgagagaaacagtgctgtcactggtccaagtaaccgtgatgaagtttctcggttacctgtgcctgcaattagggacatggctcctgtgaagtatgtccgtccagttttgcatggagatacacaattatcagacccaagagatatagggaatgatatgcgatttcttgagagaggaagtcaacttgttccctctaaaataagtagagacattgcccttgaaatagaagattttgatataccctgggaagatcttgttctgaaggagaggattggggcagggtcttttggtactgttcaccgtgctgattggaatggttctgatgttgctgtgaagatactcatggaacaagattttcatgcagagcgattcaaggaatttttgcgggaggttgcaattatgaagcggttgcgacacccaaatattgtgctttttatgggtgcagttactcagcgaccaaacttgtccatagttacagaatatttatcaagaggtagcttatatagacttcttcataaacctggtgctagggaggttttggatgaaaggtgtcggttgtctatggcatatgatgtggcaaaggggatgaattatctacataaacgcaatcctcccatcgttcatagagatttgaaatctccaaatcttttagtggacaaaaaatacacagtgaaggtctgtgattttggcctttctcgtttaaaagcgaacacatttctctcgtcaaagtctgctgctgggactccggaatggatggcacctgaagttcttcgtgatgaaccatcaaatgagaaatctgatgtatacagctttggtgttattttgtgggagctggcaacgttgcaacagccttggagtaatttgaacccagcacaggttgtagcagctgtgagctttaaggggaaaagactcgacattccacgtgacttgactcctcaagtggcaagcattatagaggcttgctgggccaaagaaccatggaaacgtccctcctttgctgcaatcatggatatgctgagaccactaattaaacctcctgtaacacctcctcaaccaggccgtacagacacgcagttgattgcgtgaatgcgtgtaatagatgtatgatttctgcacatatttggcattctttgttaatcatcttctgggaggaacaaatctttgtttacttcaggcttttgttccgtacatattagttcagaatgcccgtctagagccattttttttcttcacaaattcaagcagccatttctcccagaagagcatttgcaattgacttgtacgtttcctcgtggaaataatgtctagccatatgattttgttaatgtaagcaaataacagttcttctattttctatcaagaaatgattttgtacgtacaagaatttataatgggaatgcacagttcgtagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="52801" stop="68580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53100" g_stop="53870" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53871" i_stop="59631" i_length="5761">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59632" g_stop="59933" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="1072" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59934" i_stop="60020" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60021" g_stop="60165" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1073" r_stop="1217" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60166" i_stop="60418" i_length="253">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60419" g_stop="60522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1218" r_stop="1321" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60523" i_stop="61785" i_length="1263">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61786" g_stop="61994" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1322" r_stop="1530" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61995" i_stop="63999" i_length="2005">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64000" g_stop="64117" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1531" r_stop="1648" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64118" i_stop="64205" i_length="88">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64206" g_stop="64411" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1649" r_stop="1854" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64412" i_stop="64551" i_length="140">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64552" g_stop="64592" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1855" r_stop="1895" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64593" i_stop="64887" i_length="295">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64888" g_stop="64956" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1896" r_stop="1964" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64957" i_stop="65099" i_length="143">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="65100" g_stop="65200" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1965" r_stop="2065" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="65201" i_stop="65283" i_length="83">
            <donor d_prob="0.353" d_score="1.00"/>
            <acceptor a_prob="0.415" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="65284" g_stop="65368" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="2066" r_stop="2150" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="65369" i_stop="65442" i_length="74">
            <donor d_prob="0.570" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="65443" g_stop="65541" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="2151" r_stop="2249" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="65542" i_stop="66363" i_length="822">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="66364" g_stop="66432" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="2250" r_stop="2318" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="66433" i_stop="66531" i_length="99">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="66532" g_stop="66663" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="2319" r_stop="2450" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="66664" i_stop="67433" i_length="770">
            <donor d_prob="0.710" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="67434" g_stop="67528" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="2451" r_stop="2545" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="67529" i_stop="67616" i_length="88">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="67617" g_stop="67819" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="2546" r_stop="2748" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="67820" i_stop="68041" i_length="222">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="68042" g_stop="68276" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="2749" r_stop="2983" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2987" polyA_stop="3004"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E745183" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2984</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53100" e_stop="53870"/>
          <exon e_start="59632" e_stop="59933"/>
          <exon e_start="60021" e_stop="60165"/>
          <exon e_start="60419" e_stop="60522"/>
          <exon e_start="61786" e_stop="61994"/>
          <exon e_start="64000" e_stop="64117"/>
          <exon e_start="64206" e_stop="64411"/>
          <exon e_start="64552" e_stop="64592"/>
          <exon e_start="64888" e_stop="64956"/>
          <exon e_start="65100" e_stop="65200"/>
          <exon e_start="65284" e_stop="65368"/>
          <exon e_start="65443" e_stop="65541"/>
          <exon e_start="66364" e_stop="66432"/>
          <exon e_start="66532" e_stop="66663"/>
          <exon e_start="67434" e_stop="67528"/>
          <exon e_start="67617" e_stop="67819"/>
          <exon e_start="68042" e_stop="68276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTCATTCGACAAGTACGAAGAAGAAGAAGAAAAGAGAGAAAACTTTTAGTGAGAGAAAGTCTTTGAGAGAGAGAGGGAGTTGAAGCTATAGTGTAATGAACAATTTCTAGCTAGGGTTTTGTTGAATTGATAAATTATTGAGATGGAAATGTCTACTAGACGATCGAATTATACTTTGTTGAGTCAAGTTGCAGATGACAATTACCTTCCTCCGCCACCGAAGTACTCCGTCACTGGCGGTGGCGGTGGAGGTGGAGGAGTAGCACCGTATTATGAGTCTCATTCTGGTGAAAAGGGTAAAGGCAAAACAGGTGATAATAGAGGATTTGATTGGGATTTGAGTGATCACCGTAGTAATATGATGCAAGCGTCGAATCGGATCGGTGCGGCGGCATTTCCAGGTTCGATTGGCTTGCAGAGGCAATCAAGTGGGAGCAGCTTTGGTGAAAGTTCGATCTCCGGGGAGTATTACATGCCGTCGTTGTCTAATGCGGAGGCGTCATTTGGATATCTCAATGATGGCGGTGGCGGTGCTGAAGTGAGGATGAAGCCGTTGGAAGCTAATTTGTTCGGTGGCTCGTCTTCTAAGAGCTGGGCGCAGCAGACTGAGGAGAGTTATCAGCTGCAGTTAGCTTTGGCTTTACGGCTTTCTTCCGAAGCTACCTGTGCTGATGATCCAAATTTTTTGGATCATGTGCCTGATGAATCCGCATCCCGTGCTTCAGCTTCAGCTGCTTCGGCGGAGACCCTTTCCCATCGATTCTGGGTATGGTTGGGTTATTGTTTTGTGTTGATTTTCCTTGTCGTCTATATTTATTTTCTCTGTCAATTGCCTTAATCCAATTATGATTTTAGCTGCAACAGAGGGAAATGTGTTCCTATTATGCTTAAGGTATGTGTTGAATAATTAGCATTGTACACACAAAAAAAATAGCTTGGTTTAGATTACAAATGATTCCAGGCTTTGAATTAGGTAACAGTTTGATGTAAAGGAAATGTTTTCCTTGGATCAACTAGGACTGTTTCGTTGGGTATATGTAGGTGACATAGACTACTTTTAGTCTTGTAGAAGTGGACTATATGGTGTTATGGTAGTGTTTTGGTGATACTTCTGAGTTCTGAGTATTAATAAAGGTTGACAATAATGTAGTAGTGTGGAAAAGTGGGAAAATGACTTCTGTCAAGAAGCAAGGGAAGCCATCTTTTTGTTTGCTGAGAAACTATTTATTGGGTAAGGTGATATTTTCCTGGAAAGTGTTTTCCGTCATACCAAACACAGAATCGACAAATGGATGTGTTCCTTCAAATGTAAGTGCACTGAATCAGTTTTGATAATATTTAAACTACTAGATCCTTTCATAATTTAAAGAAAGATATGTAGCTTCTATATTATTACTGCATCCGGATAGTTCTAGAATACTAGAATATGTCGAGACTAATGCGTCAAGTAATGTGGAGGTCAAGAACAAATTTAATGCTTTTAGTTTCTCAGATGTTTGCGAACATCTCAAGCTACTCTGGAAGTGGAATTGTTGTAGTCGATATAACTGATGCCCATTTTTGTTCTCCACAAAGAAATTGGATGTTTTCTCTATGTAAAGTCTGTATGTCAGTTCTCTTTCTCATTATATAATGCTACACCAATGTGGAATGGGTTCTTTCTAAACCTGCAGTATATAATTAGGGATCATTTGGTAGAGTGTATAAGAATAATTCTAAATAAGGTGTATTGGTATTACTGATATTGGTTATGCTTGCATTAGTTATGCGGAGCTTATGCAGTGTTTAGTTTGGTGTATTAAAAACAACATTCATTGCATATTTCAAAAAAAGTTTTATTTATTACAAAAATACCTTTATTTTGAAAATTGAGAAATCCGTCGGTTACCCGCCGCCATTTGGACAATGGAAAGGATGTGAAGAGATTTTGAGGGGTAATAGTGTCTTTACCCTTGCTAATGTATGCATCAGATCCCTTGACTCTCTGCACTTGATGCACCTACAACTTGAGCACTATTTTATAAGGGAGCTATGTTTACCTGTTCTGACGTGAATTCTTTGCAACAAATTCATATCCTTACTGAAACTGTGATGTCAATGAACTTTCATTTATACATAGTTCAACTAGTAAAACACGTAGAAGTTAATAAATGTCTAAGCCCTTTACTCTATGTTGCTCACACTCTTCGATAATGTCGACGTGTGCGTGTAAGATCCTCCAAAATAGTGTATTTTTGAAGGATACAACACAGGTGCGACACATTTTTGGAGAGTCCGAGCAACCTAGCTTTTACTGTTTTGAAACATTGTATAATGAATCAATGTGTATGACACAAACTATCGAGATTATTCCCTTTATCAGTCTATCATGAGATCCATACTCGTTTTACGTACATCATGTACATATTGATGAAAATGAATCTAAGATCCATTTTCCAGCTAACACACCCTATATCCAAAATAATATTGCAATATGGGAATTAATGCAAAATTTATGACCACTCCAACAATTAGTTAAAAAGAGGATTATAAAAATTCCTTGCAATTGTGTTTTAGTAAAAGAGGTCTAGAAGTAGAATAAATTGATTTGTTTTGAGTTTGAATTTTAATTTTTTAGTATGAAGTAGATCAAACTATATTCATCAAAGAAGATAAAGGATTTTACATTACACGGTTTCACAAGATGTTAAGGGAAATCTTTTGGTTATTGATCAATAATCATGTTTTTCATTATGTGTTAATGAAATCTTTTGCGTACTAACTAAAAAGAAAACATATTTGTGGAAATGGAGAAGAACTAAAGAGTGTAGATAAAAGTTTCTCTTTTGGAGAAGTGGACAAAGGTTTGGATAAGTGAAAAAAGAAGGGGTTTTATTTTCGGATCAGATGAGTAGAAGATATCTACAAATATTATAGTGTATGAGATTGTTTGTTGTTGTATTGCATTTAACACATAAATATTCATTTTTTGGGTGTTGATTGCCTAGGTTAGACTTAGATTAGTTCAAGTCTAATGACATACATATTTCGGGTGTTGATTACCCTTTTGATCGTTTCTCTTATTCCCAAACCTTACAAATGTCGGCAGGAATGTAAGGGTGAAATGAAGTAATTCCATAAAAAATAGATTATAGAAGAAAATGGCTAGAAGACGATTCACTATTTGGCGCCCTAGATAAATATGCAAAGAATCTTGAAGCCGAAGGTCACAAATCACAATTTAAAACAATGTTATTTGTGTGGTAGAAAAAATTGGAAGAACATAGTAAAAATGGAACCCATGTCCAACAACAATAACATACCCAATGTAGTGTAGTCCCACAAGGTGGGATCAGGGGTTAGGGTATATACAAACTTCACCCATATCTCACACATAGAGAGTTGTTCCCGAAAAGACTCCGACTCAGTAACGCATATCAAAGAACATATAGAAGAAAAGTGTTATAACAAGTACTGGAGGAAAAATCAAATGACATATAGGAAAAGAAATAATAACATAAAAAGGTAGTGCAATAATCAAACAACAAGACACAATTGGTAGTAACATAAATCGTAGAATAAAGAATTACGCCAAAAAGTTAATACTACTAGTATTAAAAGAGAAACAAAACGGGGTGCCAAACTACCACCGAGCGTGATCATAGGAAAGCGAGACAACAATCAACTATCTATTAACCTTTTATCCTAGTCAACAACCTCCAAATCCTTCTATTTAAGGTCATGTTCTCGCTGAGCTGAAAATGCGCCATAACTTGTCTAATTACCTCTCCCAATACTTTTTCAGCCTACCTTTACACTTCCTCGAACCCATTATTACCAACTTTCTGCACGTCTCACTAGGCCTCTCCACATACTTGAATCGTCTCTATCTCACTTCTATTCTTGTCCACCACAGTGGCTACTCCGACCTTCTCCTGGATGTCTTCATTCCTAATTTTATTCTTCCTAGTATGTCCACATATCCACCATCACCGATCTCCCCATTTTCTTGGAATAAAGACCTAAGATACATGAACTTTCTTTCCTGGGGATGACTTGCATACCAAGCTTTACTTACACGATAAGTTCTAGTGTTCCAAGCATCATACTATTTGAATGTCTAGTTTTTATTCAGCATGAACTAAATTAGGAGTAGAACTTGTGAATTATATTAAATATCAATTGCGAGCATGTTGAGTTAATAGTCGTCTTTTACTGTGTGGTTAAATTAGGACAGAAGAAGACAAGAAGTGGAATATAACAATTTGTTAAATTACCTTTATGGAAAGAGGAATGTGTAGTTTGATAGAATGTTGAAGTGAGTAAAAATGTGAAATTTTCACATATGAAGTAAAAAGCATATCGAGTTTGTAGCTCCTTTTTACCCTTTGAAATTTAAGATGGATGAAGGTGGAATTATAATAAATAGTTTAACCTCCCCTTTAAGACATTATAAGTTATGTACTAAATTGAATGCTCAGATTAGTGGCTCTATCATAAAGATTAGAACATTCATTCTCTTTCTTCTATTCTATATTAACAGAAGTCTAGACAATGTCCCATACAAAGAAATAATCATTAACTATTGAAAATATTAATATTGTTTTCATCATACGAATGTCAAATATCTACTAACCATAGGCTTGATATTTGACCATGAATCTTGCCAAAACTATTGGCAGCATATAGTAGAAGTATTTGGTAGCGGATTCACAGGTGCCATTGCAAAAAGCAAATGTAATGAAGAGGTGGAAGTTGGGACATTGATGACTTCACATTTTACATGATAAGTTAGGGAGGGCCTTTCTACTCTATCAAAGCAAAAAGACTCGAGAGACGCTTATAATGCCTGTGAAGAACATGTCTCTACCCTCGATCAGTGATCTTGACATCGAGTTTTGGAATAGAGAAACTGTTGGCAAGGAGTGTTACCCCTTTTTGTGGGCCATATGTGAGGTGATTGGTATTCTCATGCCAATGGGTTTTGCATACTAGATGGTTCGACTATTCCATCGAGTACATGCTATTTCCATTTAGCACAAGTATTGAGTAATTTTGTTTAAGGCTTAAGACATGGGCAGATGTGAAGAAATTACTTATCGTCCTTTGTGTCTGCTACTAGGATTTGAATCCTGATCTTTTATGTTTTTCACCCTTGTTGTACTAAATTCAGCGGAGAAACTTTTGGATCTTTGTGGTAATGTGCCAAAACCCTTCGAAAATATTTCCTAATGTTTTTGTTAAATTAGGTCTTAGGCCTAAATCACACTCCAAAAACTAACTCAAAGGGAGTAGGATTGCCCAAGCCTTATAAGGAGTCCACCCATCTCATTAACCATCAATGTGGGGGGTTTTGTTATTCTTTAACACCCCACCTCACGCCCAGTGCTTTGCATTTGGTGCGTGAGCAATTTGATTTTTTGAGCCCCAACATTGGATGAGACGGGCCCTGCTCTGATACCATGTTAAATTAGGTTTAAGGCCTAACTTACACCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCTCAAGCCTTATAAGGAGTCCACCCATCTCATTAACCACCAATCTGTTCATGACAATTATACTTACTAGGCGACAAAATGGATTTCAACTTTATTGATTGCTAGGCCTCACTTGGGTTAGAGAAGAACATGTCATTTTGAGTGGAATAAAAAATCGACGAGCACGTGATAGCTGATACAATATGTATGCGTTGTTTCCTAAGTTCATTGATAGTATCTATGTTAGTATCAATGAAAACCTTGCTTGATAAGAAGAGTTCATTAATAGTATCTCATAAGCCGGTTTTTGTGTATATTTCTAATAAAGATTTTTTTTGACAAAATATTCCTCATAAAGATTTATTTTCCAATACTAGAATCTTTTGCGGAAGTAAGAGTAGAGAGGAAGGACCTAGGTATTGAATTAGAAGCCTCACAAAGGAGCTCTCGATGAGTTCAATTGGTGAAAAAATTTACTCGATTGTCTCAATCGGCTCATTTTGATACAATTTTCTATATCTAGAAGTGTTCGATCTTTCTTGTATCTTGTATTGGAGATATGAATTGATGCATGTAAATGCAGGTGAAGAAATTTATGAGGAAAGGTGCGTTCTTGTTTCATGAAACCTTATTGGTGACCGTTCTTTACTTTTTGATATACTGCTTGTATACATGAATTTTGGTAACATTTTGATAGAATTATTTACGTTATTTGTCCTGCATCAGTCCCTAAAAATGGTAAAAGCATGTTGATCACTTCTTCTGTGTCAGGTGTTTCTGTGCAAATAGGAACAACTAATAAATAGTGTCATTGATGATTTTGAATCTTGTCATTCTAACCAGTCGAGCAAGAGCATTTATTGTTTTCTATTTTTTGGTTATACATTATGTTATCATTTTCTGGCTGCTTATTGATTCTATTTTTTATGTTATGTGTTTATGTTCTTTTAGTCTCTCTTTCTTTGATCGATTCAATCATGCTTTCCAGGCTTCCTAGGTTTTTTGCTGAAAACCATTTTCTGCTTTGAATCGTTGTTCTGTACCAGGTAAATGGATGCTTGTCGTACTTTGACAAAGTGCCTGATGGATTTTACTTGATCCATGGGATGGATCCATATGTCTGGATTGTCTGCTCAGATCTACAAGAAAATGCCCGGGTTCCATCTATTGAATCAATGAGAGCTGTTGATCCCTCTGTAGTACCATCAGTTGAAGTGATTTTGATTGATCGGCGTACGGATCCAAGCTTGAAAGAACTGCAGAATCGGATCCATAGTCTCTCTCCTACTTGTGGCACAACAAAAGAAGTTGTTGATCAGCTTGCTCAGCTGGTCTGCAGTCATATGGGGTAAGTGCCAGAAACTTCTTTTGACTCCGATAAATTACTTTTTTTGTGTGTGTTTTCTCCTTTTTGTAATTAAGTTTTATTTCTTAGGGGCGCAACTTCTGCCGGAGAAGATGAGTTGGTTCCTTTGTGGAAGGAGTGTAGTTATGAGCTGAAGGATTGTCTAGGATCCACTGTGCTTCCCATTGGTAGCCTGTCTGTTGGCCTTTGCAGGCATCGAGCTTTGCTATTTAAAGTATGTTCTAGATGTGATCTACTGATTTTTAGTTTGCTGTTTTATTCTCAAGATTTACTTACACAGGAATTTATGGATCAGCATCTGATGAATGGCGTTCTTTTAAAAAAAACTAAAGAAAAAACATGTTTTTTGCAAATTGTTGTCTTCTCTCCTCTGTCAGAATAAATGTACGTTCAATCAGGAGTTTCTTAGTTTTGGTGGTACGATGGAACATTGATGTGATATCATGAATTTCACATGATTGTTGCAGGTTCTAGCTGACGCCATTGGTTTACCATGTCGAATTGCCAAAGGATGTAAATATTGTAACAGAGCTGATGCTTCCTCATGTTTAGTTCGTTTTGGACCTGACAGGTGCGAATCCAAATTTTAAATAATCTCGGAGTATATTATCATTTCATCCCCAAACTTGCATATTTGAGGAAAATTATTTTGTTAGCCATGTTTGTTTAAATATATAAAGCAATGATAGATGGAAATTGATGTTCCAACTTCCCTTCTGTTTCAAAAACCATTAATATGTATTTTGTTTGTGATAATCAATTTTTCCTTCCCTACTCATATATTCCTGTGCAGTTAACATGTGCAATTTATATGGACTTTGATCGTGTTGCCTATATCTTACCTCGTATTTAGTGTATAATATGGCCAACTTCTGAATTTCTTAATCTTTCTGGTTTAAGCTTTCTTTGAAATGCATAGAGCTAGTATATCTGTAGAAACTGAACTTAATATATTCATGTCTGGGAGATGAGAATGATGATGTTTTGAATATTTTTGTGTGGTCTTTCTGCATTCATGCTGCAAGAGATCTGTAAAGATCAGTCACTGTATGTAGTTCATGACCTATGTTGGTACTTGGTACTAACTGAAGTTTCTCCTTCGTCCTGATAGCTGCTCCTCTTAGTTCTTTTTGTTGTTGGAAAAGCCATATTTATTTTTGGTTTTTACAATATAACTACTGCAACCTCGGTGCCAAAAAGAACGGTGGCACTTCGAGTAAGTGGCACGCTGCATTCAATATGAATTCAGACATGGTTCTCTGAATGGTTTCTAGAGAAAAATTATACATCTAGAGACTGCATAAGGGTACTACATATGAAATTTTTTTAAATGGCTAACATTGTTTTTATAAAAGATTACATAAAACATCGTAATCAAAGAAAAGGTTGTTTGATTCCTCCAAATAGTAATGCTGCCATTCTTTTTGGATCAAAGGAGGAGTATCTTGGGGTGGTGATAGGAATCTTAATATTTGAAAGAACAGATCCCATTATTAAAGGAATACCTTATACACTTGTAATATAATAGATTCTCAATTTCGTGATTGAATTGCAACGAGATGTCCTCCTTTCTTCTGCTCAGCCCTAAAATGTGGAGGAGAAGAAATTAAATGGGGAAAAGTATAAGCAATTAAAATTAGAGATTGTGTAGCGAACAGCAGGATACTATTTTTCTATGCTACTTTCAAGTTTCAACTAGGATTTAGCCTGAAAAAAAATGGCGGTTCTTGTAAAGAAATGCAAGTGTTAGTTCTTCTTTACACAGTTAGATATATGCGATTTCTATTGATTGTTAAAGAGAACAGAGTCTTGATTTTCGCTCTTCACCATATAGGGAGTACCTGGTTGATTTGATTGGGAGCCCTGGATGCTTATGCGAACCAGATTCCTCGCTCAACGGCCCATCTTCTATCTCAATCTCTTCACCATTGCGATTTCCGAGATTCAGAGAAGTTGAACCGACAACTGATTTCAGGTCACTTGCCAAACAGTATTTCTCGGATTGTCAATCGCTTAATCTTGTGTTTGAGGAATCTTCAGCAGGTTATCCTCTAAATCCTACCTGCTTTCATGAGCAAATACATCTTTGCTGCTTGTTTTGGTTGTTTCCCGGATGTTAAGCTTGGTGTCTGCGATATTGTGATGAGAGATGTTCAGTTCACGCATAATTTTATAATGGCTTCAGACAGATGTTTCTCGGTTCCTAGCCAAGAAGAAATATCCTATTTCCTCGTGTTAAATGTTCCTCTATTTTTTTTCATAAAAAAAAGTTTAAATCTTTTATCTTTGGATCTGAAGGGTTATCCTTGGTTTCTCTAAACATATACTAGAAAAACTCAAACCTTATTAGTATTTATGGTATAAGCATTTCCCTAAAAATTTTGGCTGTACTTATTTGTCCTATTTTTGAAGGGCATTCTTTACAACTGGTTTCCCGACTTTTCACTCCCGGGCTTCCCAATTCCCATTACTAGTTGTACTTAAACAAACCTACAAGCATATTTGCTTTCTCAGAATTCACTCACCATTGTCTCTTCTACATGATGTCACTACTATCTGACTGTAATTAAGCTGGAACCTCACTAACCATAAATTTACTTGTACCTACTAAAAAATAAGTAAAATAATAATGGAGATAACAATACAATTGTTTCTTTTCCCTCCTCCATTTTATAGGTTTTGATTTATGGCGACTTAAGTTTTATTTTTCAGCAAAGTGGAAACCAAGAATCTAAGGTTGTAGAAACTTATAAATATATGCCTCAAATCCCAAGGTAGTTGAGGTCTGCTATATGAAACTCACTGTCCATGTTGCTCCCTTAAAGACCAGTCTTAATTCAATTATTTGGGTTTTCTAACACTAGAAGTTCTCTACATTTTTTACTGGCAAAGAAATCTACGTTGAAGGTGTTCCATATTTTGAGGATACATCGTGAAATGAGAAGTTTTGTAGTGGCTGCTAACTTACTAGAACCCTCCTCATTTATTGGGCTTGAGATTGGCAAAGGCGAAGCAGCTATCTATAATATCTGTCTTTCTTCTCTTTTATTGTTTTATTGTCGTTTTATGTTCTATTCGGGGCAACACAGGTTGTGCTCTCCGAAAACATAATTTCAATTTTCTATTCAATTCAAAATTCAAATTGTAGTATGATACTTTTCTGATATCTGATAATTCTATATCGGGAACATATATAAATAATATATATCCGTCTAACAATTTATCTTGGGGGGTTCACATATACTGATAATTGTTGTTATAATTATTATTAATAATTAAAATTGAGAAGGATTTTTTGATTGCAAATATCCATACTGAACTGATTAGTTATATATTATATATCAAGTTGTATTTTGTTATATCATTAGGATCTTTGCTTTTAGAAAGCCAATTTGACCTCTTGTATGGTAAAAGACACCTCTAGATTACACAAGGTCCACATTTGTGAACCTTTGACACCCAGAGGTTTTCTTGGCTAATTCTCTGGTTTACTGTGATGTTTACCAAAAGGTTTGACTCAAATTAATGAAACTAAGATGTTGAGACATTCGTTTTTTTTAAAAATGACTCAACTAACAGAATATATTTCTCATTCTTTTCTAATGTTATTGTATTTTGTTTTCTTTCACAAACTATACTTCATAATTTACTTAGAGAAGTTGATTAGTAGCTGTCTCCCTACCCTGCAGCTGTGAGCTTTTATGATCCTAGTTGCTGTATTCTTCAGCATTGTGGACATGCTGGACACCATAAAAAATGTTATATTAAAAAATAAAAATAGAAAAGAAGATACTAACACAGATCTTAATAAATCTACAAAATGACCTATATTCTCTAAACCTACTTCTTTACACCAAAAGTAGAAAGATATTATACAATTCCATTTAACTTTTCTTAGTCACGTTTAGCATATCTATCTAGTTGCCTTTCCTCTTCCCATACAAATAAATATTATTATCTTGACAAACTAATTCCCTTGATTGTTTCTTGAATTTTATACCCAAACATGTTCTGTTTCAAGGTTCTTAATTAATATTGTTTGTCACAGGAGCTGCTGTTGATGGAGACGCAGGACAAACTGACCGAAATAACATTGAGAGAAACAGTGCTGTCACTGGTCCAAGTAACCGTGATGAAGTTTCTCGGTTACCTGTGCCTGCAATTAGGTAAAACGGTCTTGACGAAGACTGTCAACTTACTATTTACTAGTGTAGATAGTCCTCAAAATATCTTAAACTCAGTTAACATGGACAGGGACATGGCTCCTGTGAAGTATGTCCGTCCAGTTTTGCATGGAGATACACAATTATCAGACCCAAGAGATATAGGGAATGATATGCGATTTCTTGAGAGAGGAAGTCAACTTGTTCCCTCTAAAATAAGTAGAGACATTGCCCTTGAAATAGAAGATTTTGATATACCCTGGGAAGATCTTGTTCTGAAGGAGAGGATTGGGGCAGGTAATCCCTGCCTGCTATCTTTTGTATCCTCATTTTTAGTCTCGTGCTATGATTGTCTCAGTACATGTTAGTGATATTGGGATGCTAGAGTATCATAGCATCCTCTTCTCATGTACCTAACACTGATTGTTGCATCTCAGGGTCTTTTGGTACTGTTCACCGTGCTGATTGGAATGGTTCTGTAAGACATCTCCTTTTAGTTCTGCATCCTTGATACTCGTTTTTGTTATATCAGTTAACTCATTTAGCACTTCGGAGAAGCATTTATTCAGTGTAATTTTTGTAAATGATTTGGGTGTTTATTTATTTCTATTTTGTTTTTGGCCTGATCCACTTCTCGAATAAATGTTGTTGGTTTATCTGTTGATCTCTCTCTTTTGTTTTCCTTATTTGAGATTATCTTTCTGAATTACCCTGTCTCGTTTGGTTTTATTCCTTCATAATTGCATGCTGATGGAAGTTTCAAATTACTTTAGGATGTTGCTGTGAAGATACTCATGGAACAAGATTTTCATGCAGAGCGATTCAAGGAATTTTTGCGGGAGGTAACTCTCATTTCCCTATCTCCTCAACTATTGATAAGCAAACTGGATAAAAGAGAGAAAATGAGGATGGGTGAATGCCAGTTTTATTGTTTATTTTCCTTAGACCAATTGCACTAATCCGACCTTCCTTCCGTTTTGTTTAGGTTGCAATTATGAAGCGGTTGCGACACCCAAATATTGTGCTTTTTATGGGTGCAGTTACTCAGCGACCAAACTTGTCCATAGTTACAGAATATTTATCAAGGTTTTATCTTGGCAAACCCTACAGTAATCGGACTTTTGATTTTTCAGTCTAGCTAACAGTGCCCATGTTGCAATGTATTTCAGAGGTAGCTTATATAGACTTCTTCATAAACCTGGTGCTAGGGAGGTTTTGGATGAAAGGTGTCGGTTGTCTATGGCATATGATGTGGTATGAATACGTCCCCGCTCTGCCTCATTTTATTTTGAATCTGGGGCTCATCTCCTTATATCATATTGGTGCAGGCAAAGGGGATGAATTATCTACATAAACGCAATCCTCCCATCGTTCATAGAGATTTGAAATCTCCAAATCTTTTAGTGGACAAAAAATACACAGTGAAGGTGAGAATAATTTCCTTTTCAGCACATGTTAAAATTGCAATCCATCTTTTCTCTATTGATACAGTTCTTGACTTGCGCTATCAGAGTCGTTTAAAGGAGAGAAAAATGGAGAGGATGTCTTAGTGTCAAAAACTTGTATACTTATGCATAATTATTGGAGAACAAAAAAGGAAGTTTGGAGGGATAAAGCTTATGTCAGATTTCTCAGATAATGGAGAACTAACGGCGTGTAATGTTGTGGGGAGGATTAAATTGCAACAGACAGCATATATCTTGAAGATTGTACATTATACTTCTGGTTTTGTAGGCCCGTGCGAGTCAGAGGTTTCTTTTGTCATCCGAATGGACATTGACCATCTGGAATCGTGGTAATTCAATGTCCACGTGGCAAGGATGCTGGTATTTGTTTATCTAGCGCCATGTTGATGTACTGGACACCTATCATAACTTCTTTTTTATGTTCTGGATGCAGCATCTCAAGATATTAAAACTCTATGAGGGGGAAGGTTTTTAGTATATTTTAGTTTTACTATTTAGATTAGTGTGAGATACAGGAAACTTCTAGTCCTAGAAAAGCCCTTAATTTGCGTCAACAGACATTATATTGTGTCTACAATGCTTATGCTGACAATACAACGTAAGCTCTGCATCTGATCTGACTCTACTGCATTCTGGAACAAGTCTTAATGAAAGTTGTTTATGATAGATAATTGAGTTCTGTTATGGTGTTTCTCTATGCATATTTTGTGCTCTTATATTATTAAAACCTTCTCTTTATGCAAAGATGTTGAATGTCCCCGGCCTGTCTGATGTCTTCGTCAGGTCTGTGATTTTGGCCTTTCTCGTTTAAAAGCGAACACATTTCTCTCGTCAAAGTCTGCTGCTGGGACTGTAAGTGCCTGATTCAACATATGATTTGTTCAACTTCCGCTCGTCTTTTTCTCTTCACGTCATCGATGCATTTTTTTAACTGGTTCTTCTTGTGAATAGCCGGAATGGATGGCACCTGAAGTTCTTCGTGATGAACCATCAAATGAGAAATCTGATGTATACAGCTTTGGTGTTATTTTGTGGGAGCTGGCAACGTTGCAACAGCCTTGGAGTAATTTGAACCCAGCACAGGTTTGTATTTCTTATCTCTATGCTCTATTGTCCCGGGGGTGGGGGGTGGGGGGGAGAGGGGGAGCCCATTCTTATGTAAATGTAAAATCTGGAGAATGGGCTATGTCTGGAGCCATTCAATTTTGTGTCAGGAGTTGACTAAAGTCTTTGTTTCTGTTTATGTCTGGTAGACTCATACCAGGGGATGGAGAACAATCCGATTTGCTTCAGCAATTCTCTGAAGAGTCATTTATTCCTCATTTTATATACCTCTCTTCTCCATTTGGTTTAGGGAGAGAGCTAGTCATTCATTGGGCATTGAATGTCGATGTCAATGTTATAAAGATTCTTCATGCTTTGATTAGTATTCTCATATCAGCTTCTTTATAGCAAAGATCTTTCTCTGACGAAGATACAGTCAATTAAGAAATGTGGATAAAACGATATCAATCGCATGGAAGATATTTCTATAAGTTCCCTCTTTTGATTTCCGAATTTCTGATATTTCTCTTTGATTAAAAACCAGGGAGGGCACTCAATCTTGTCTTGGTATCTAGGTGGCAACACCTTTATGATACCTCTGATTGAAAACATTGATTTAATACTAGAAAGACAACTTGGATAATTTGCAACACTACTTGGCACTTGTATTGCATCTTGGCTATATTTTAAAACGGAACATATGCATTGTTATCTTTATTGGTATGCTCGTTGTTAAGAGATGAGATAAGAGGGGGTGTGATATCGATTCTTGTGAATTCTGTATTGGTTAAATGCATCTAAACCTGCAGGTTGTAGCAGCTGTGAGCTTTAAGGGGAAAAGACTCGACATTCCACGTGACTTGACTCCTCAAGTGGCAAGCATTATAGAGGCTTGCTGGGCCAAGTATGTTGCTATGTTCTTCCATAGTTCAGTCACATGGGTTTTGGTTTGCTTTGATGTGTACTTCAAGTTACTTTTGGTAATGTTGCAGAGAACCATGGAAACGTCCCTCCTTTGCTGCAATCATGGATATGCTGAGACCACTAATTAAACCTCCTGTAACACCTCCTCAACCAGGCCGTACAGACACGCAGTTGATTGCGTGAATGCGTGTAATAGATGTATGATTTCTGCACATATTTGGCATTCTTTGTTAATCATCTTCTGGGAGGAACAAATCTTTGTTTACTTCAGGTTCGTGTATCCTGAAGTCTCTCTCTTCCTTCTGCTTAAATTTTACATTTGTCTTGATGTACACATGTTACTCCAACTTAAGTCGAAGTTGGAAGTGTTGGTGATTGTTTCGACTTTCTGACTTCAACTTGGCAGATGTGAAGAGGGTTCACCTCTTAGCTTCCTATGCTGTTTCGTTTGATAGTATGTGAGCTTGTAACAACCTTTTTTTTTTATTTACAGGCTTTTGTTCCGTACATATTAGTTCAGAATGCCCGTCTAGAGCCATTTTTTTTCTTCACAAATTCAAGCAGCCATTTCTCCCAGAAGAGCATTTGCAATTGACTTGTACGTTTCCTCGTGGAAATAATGTCTAGCCATATGATTTTGTTAATGTAAGCAAATAACAGTTCTTCTATTTTCTATCAAGAAATGATTTTGTACGTACAAGAATTTATAATGGGAATGCACAGTTCGT</genome_strand>
        <mrna_strand>GACTTCTCATTCGACAAGTACGAAGAAGAAGAAGAAAAGAGAGAAAACTTTTAGTGAGAGAAAGTCTTTGAGAGAGAGAGGGAGTTGAAGCTATAGTGTAATGAACAATTTCTAGCTAGGGTTTTGTTGAATTGATAAATTATTGAGATGGAAATGTCTACTAGACGATCGAATTATACTTTGTTGAGTCAAGTTGCAGATGACAATTACCTTCCTCCGCCACCGAAGTACTCCGTCACTGGCGGTGGCGGTGGAGGTGGAGGAGTAGCACCGTATTATGAGTCTCATTCTGGTGAAAAGGGTAAAGGCAAAACAGGTGATAATAGAGGATTTGATTGGGATTTGAGTGATCACCGTAGTAATATGATGCAAGCGTCGAATCGGATCGGTGCGGCGGCATTTCCAGGTTCGATTGGCTTGCAGAGGCAATCAAGTGGGAGCAGCTTTGGTGAAAGTTCGATCTCCGGGGAGTATTACATGCCGTCGTTGTCTAATGCGGAGGCGTCATTTGGATATCTCAATGATGGCGGTGGCGGTGCTGAAGTGAGGATGAAGCCGTTGGAAGCTAATTTGTTCGGTGGCTCGTCTTCTAAGA-CTGGGCGCAGCAGACTGAGGAGAGTTATCAGCTGCAGTTAGCTTTGGCTTTACGGCTTTCTTCCGAAGCTACCTGTGCTGATGATCCAAATTTTTTGGATCATGTGCCTGATGAATCCGCATCCCGTGCTTCAGCTTCAGCTGCTTCGGCGGAGACCCTTTCCCATCGATTCTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGATGCTTGTCGTACTTTGACAAAGTGCCTGATGGATTTTACTTGATCCATGGGATGGATCCATATGTCTGGATTGTCTGCTCAGATCTACAAGAAAATGCCCGGGTTCCATCTATTGAATCAATGAGAGCTGTTGATCCCTCTGTAGTACCATCAGTTGAAGTGATTTTGATTGATCGGCGTACGGATCCAAGCTTGAAAGAACTGCAGAATCGGATCCATAGTCTCTCTCCTACTTGTGGCACAACAAAAGAAGTTGTTGATCAGCTTGCTCAGCTGGTCTGCAGTCATATGGG.......................................................................................GGGCGCAACTTCTGCCGGAGAAGATGAGTTGGTTCCTTTGTGGAAGGAGTGTAGTTATGAGCTGAAGGATTGTCTAGGATCCACTGTGCTTCCCATTGGTAGCCTGTCTGTTGGCCTTTGCAGGCATCGAGCTTTGCTATTTAAA.............................................................................................................................................................................................................................................................GTTCTAGCTGACGCCATTGGTTTACCATGTCGAATTGCCAAAGGATGTAAATATTGTAACAGAGCTGATGCTTCCTCATGTTTAGTTCGTTTTGGACCTGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACCTGGTTGATTTGATTGGGAGCCCTGGATGCTTATGCGAACCAGATTCCTCGCTCAACGGCCCATCTTCTATCTCAATCTCTTCACCATTGCGATTTCCGAGATTCAGAGAAGTTGAACCGACAACTGATTTCAGGTCACTTGCCAAACAGTATTTCTCGGATTGTCAATCGCTTAATCTTGTGTTTGAGGAATCTTCAGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTGTTGATGGAGACGCAGGACAAACTGACCGAAATAACATTGAGAGAAACAGTGCTGTCACTGGTCCAAGTAACCGTGATGAAGTTTCTCGGTTACCTGTGCCTGCAATTAG........................................................................................GGACATGGCTCCTGTGAAGTATGTCCGTCCAGTTTTGCATGGAGATACACAATTATCAGACCCAAGAGATATAGGGAATGATATGCGATTTCTTGAGAGAGGAAGTCAACTTGTTCCCTCTAAAATAAGTAGAGACATTGCCCTTGAAATAGAAGATTTTGATATACCCTGGGAAGATCTTGTTCTGAAGGAGAGGATTGGGGCAG............................................................................................................................................GGTCTTTTGGTACTGTTCACCGTGCTGATTGGAATGGTTCT.......................................................................................................................................................................................................................................................................................................GATGTTGCTGTGAAGATACTCATGGAACAAGATTTTCATGCAGAGCGATTCAAGGAATTTTTGCGGGAG...............................................................................................................................................GTTGCAATTATGAAGCGGTTGCGACACCCAAATATTGTGCTTTTTATGGGTGCAGTTACTCAGCGACCAAACTTGTCCATAGTTACAGAATATTTATCAAG...................................................................................AGGTAGCTTATATAGACTTCTTCATAAACCTGGTGCTAGGGAGGTTTTGGATGAAAGGTGTCGGTTGTCTATGGCATATGATGTG..........................................................................GCAAAGGGGATGAATTATCTACATAAACGCAATCCTCCCATCGTTCATAGAGATTTGAAATCTCCAAATCTTTTAGTGGACAAAAAATACACAGTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGATTTTGGCCTTTCTCGTTTAAAAGCGAACACATTTCTCTCGTCAAAGTCTGCTGCTGGGACT...................................................................................................CCGGAATGGATGGCACCTGAAGTTCTTCGTGATGAACCATCAAATGAGAAATCTGATGTATACAGCTTTGGTGTTATTTTGTGGGAGCTGGCAACGTTGCAACAGCCTTGGAGTAATTTGAACCCAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAGCAGCTGTGAGCTTTAAGGGGAAAAGACTCGACATTCCACGTGACTTGACTCCTCAAGTGGCAAGCATTATAGAGGCTTGCTGGGCCAA........................................................................................AGAACCATGGAAACGTCCCTCCTTTGCTGCAATCATGGATATGCTGAGACCACTAATTAAACCTCCTGTAACACCTCCTCAACCAGGCCGTACAGACACGCAGTTGATTGCGTGAATGCGTGTAATAGATGTATGATTTCTGCACATATTTGGCATTCTTTGTTAATCATCTTCTGGGAGGAACAAATCTTTGTTTACTTCAG..............................................................................................................................................................................................................................GCTTTTGTTCCGTACATATTAGTTCAGAATGCCCGTCTAGAGCCATTTTTTTTCTTCACAAATTCAAGCAGCCATTTCTCCCAGAAGAGCATTTGCAATTGACTTGTACGTTTCCTCGTGGAAATAATGTCTAGCCATATGATTTTGTTAATGTAAGCAAATAACAGTTCTTCTATTTTCTATCAAGAAATGATTTTGTACGTACAAGAATTTATAATGGGAATGCACAGTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E708208" ref_strand="+" ref_description="SGN-E708208 [FA35AE10]">
      <seq>cgattgtctaggatccactgtgcttcccattggtagcctgtctgttggcctttgcaggtatcgagctttgctatttaaagttctagctgacgccattggtttaccatgtcgaattgccaaaggatgtaaatattgtaacagagctgatgcttcctcatgtttagttcgttttggacctgacagggagtacctggttgatttgattgggagccctggatgcttatgcgaaccagattcctcgctcaacggcccatcttctatctcaatctcttcaccattgcgatttccgagattcagagaagttgaaccgacaactgatttcaggtcacttgccaaacagtatttctcggattgtcaatcgcttaatcttgtgtttgaggaatcttcagcaggagctgctgttgatggagacgcaggacaaactgaccgaaataacattgagagaaacagtgctgtcactggtccaagtaaccgtgatgaagtttctcggttacctgtgcctgcaattagggacatggctcctgtgaagtatgtccgtccagttttgcatggagatacacaattatcagacccaagagatatagggaatgatatgcgatttcttgagagaggaagtcaacttgttccctctaaaataagtagagacattgcccttgaaatagaagattttgatataccctgggaagatcttgttctgaaggagaggattggggcagggtcttttggtactgttcaccgtgctgattggaatggttctgatgttgctgtgaagatactcatggaacaagattttcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="59788" stop="65228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60087" g_stop="60165" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60166" i_stop="60418" i_length="253">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60419" g_stop="60522" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="183" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60523" i_stop="61785" i_length="1263">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61786" g_stop="61994" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="392" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61995" i_stop="63999" i_length="2005">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64000" g_stop="64117" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="510" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64118" i_stop="64205" i_length="88">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.805" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64206" g_stop="64411" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="716" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64412" i_stop="64551" i_length="140">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64552" g_stop="64592" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="757" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64593" i_stop="64887" i_length="295">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64888" g_stop="64928" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="798" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E708208" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60087" e_stop="60165"/>
          <exon e_start="60419" e_stop="60522"/>
          <exon e_start="61786" e_stop="61994"/>
          <exon e_start="64000" e_stop="64117"/>
          <exon e_start="64206" e_stop="64411"/>
          <exon e_start="64552" e_stop="64592"/>
          <exon e_start="64888" e_stop="64928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTGTCTAGGATCCACTGTGCTTCCCATTGGTAGCCTGTCTGTTGGCCTTTGCAGGCATCGAGCTTTGCTATTTAAAGTATGTTCTAGATGTGATCTACTGATTTTTAGTTTGCTGTTTTATTCTCAAGATTTACTTACACAGGAATTTATGGATCAGCATCTGATGAATGGCGTTCTTTTAAAAAAAACTAAAGAAAAAACATGTTTTTTGCAAATTGTTGTCTTCTCTCCTCTGTCAGAATAAATGTACGTTCAATCAGGAGTTTCTTAGTTTTGGTGGTACGATGGAACATTGATGTGATATCATGAATTTCACATGATTGTTGCAGGTTCTAGCTGACGCCATTGGTTTACCATGTCGAATTGCCAAAGGATGTAAATATTGTAACAGAGCTGATGCTTCCTCATGTTTAGTTCGTTTTGGACCTGACAGGTGCGAATCCAAATTTTAAATAATCTCGGAGTATATTATCATTTCATCCCCAAACTTGCATATTTGAGGAAAATTATTTTGTTAGCCATGTTTGTTTAAATATATAAAGCAATGATAGATGGAAATTGATGTTCCAACTTCCCTTCTGTTTCAAAAACCATTAATATGTATTTTGTTTGTGATAATCAATTTTTCCTTCCCTACTCATATATTCCTGTGCAGTTAACATGTGCAATTTATATGGACTTTGATCGTGTTGCCTATATCTTACCTCGTATTTAGTGTATAATATGGCCAACTTCTGAATTTCTTAATCTTTCTGGTTTAAGCTTTCTTTGAAATGCATAGAGCTAGTATATCTGTAGAAACTGAACTTAATATATTCATGTCTGGGAGATGAGAATGATGATGTTTTGAATATTTTTGTGTGGTCTTTCTGCATTCATGCTGCAAGAGATCTGTAAAGATCAGTCACTGTATGTAGTTCATGACCTATGTTGGTACTTGGTACTAACTGAAGTTTCTCCTTCGTCCTGATAGCTGCTCCTCTTAGTTCTTTTTGTTGTTGGAAAAGCCATATTTATTTTTGGTTTTTACAATATAACTACTGCAACCTCGGTGCCAAAAAGAACGGTGGCACTTCGAGTAAGTGGCACGCTGCATTCAATATGAATTCAGACATGGTTCTCTGAATGGTTTCTAGAGAAAAATTATACATCTAGAGACTGCATAAGGGTACTACATATGAAATTTTTTTAAATGGCTAACATTGTTTTTATAAAAGATTACATAAAACATCGTAATCAAAGAAAAGGTTGTTTGATTCCTCCAAATAGTAATGCTGCCATTCTTTTTGGATCAAAGGAGGAGTATCTTGGGGTGGTGATAGGAATCTTAATATTTGAAAGAACAGATCCCATTATTAAAGGAATACCTTATACACTTGTAATATAATAGATTCTCAATTTCGTGATTGAATTGCAACGAGATGTCCTCCTTTCTTCTGCTCAGCCCTAAAATGTGGAGGAGAAGAAATTAAATGGGGAAAAGTATAAGCAATTAAAATTAGAGATTGTGTAGCGAACAGCAGGATACTATTTTTCTATGCTACTTTCAAGTTTCAACTAGGATTTAGCCTGAAAAAAAATGGCGGTTCTTGTAAAGAAATGCAAGTGTTAGTTCTTCTTTACACAGTTAGATATATGCGATTTCTATTGATTGTTAAAGAGAACAGAGTCTTGATTTTCGCTCTTCACCATATAGGGAGTACCTGGTTGATTTGATTGGGAGCCCTGGATGCTTATGCGAACCAGATTCCTCGCTCAACGGCCCATCTTCTATCTCAATCTCTTCACCATTGCGATTTCCGAGATTCAGAGAAGTTGAACCGACAACTGATTTCAGGTCACTTGCCAAACAGTATTTCTCGGATTGTCAATCGCTTAATCTTGTGTTTGAGGAATCTTCAGCAGGTTATCCTCTAAATCCTACCTGCTTTCATGAGCAAATACATCTTTGCTGCTTGTTTTGGTTGTTTCCCGGATGTTAAGCTTGGTGTCTGCGATATTGTGATGAGAGATGTTCAGTTCACGCATAATTTTATAATGGCTTCAGACAGATGTTTCTCGGTTCCTAGCCAAGAAGAAATATCCTATTTCCTCGTGTTAAATGTTCCTCTATTTTTTTTCATAAAAAAAAGTTTAAATCTTTTATCTTTGGATCTGAAGGGTTATCCTTGGTTTCTCTAAACATATACTAGAAAAACTCAAACCTTATTAGTATTTATGGTATAAGCATTTCCCTAAAAATTTTGGCTGTACTTATTTGTCCTATTTTTGAAGGGCATTCTTTACAACTGGTTTCCCGACTTTTCACTCCCGGGCTTCCCAATTCCCATTACTAGTTGTACTTAAACAAACCTACAAGCATATTTGCTTTCTCAGAATTCACTCACCATTGTCTCTTCTACATGATGTCACTACTATCTGACTGTAATTAAGCTGGAACCTCACTAACCATAAATTTACTTGTACCTACTAAAAAATAAGTAAAATAATAATGGAGATAACAATACAATTGTTTCTTTTCCCTCCTCCATTTTATAGGTTTTGATTTATGGCGACTTAAGTTTTATTTTTCAGCAAAGTGGAAACCAAGAATCTAAGGTTGTAGAAACTTATAAATATATGCCTCAAATCCCAAGGTAGTTGAGGTCTGCTATATGAAACTCACTGTCCATGTTGCTCCCTTAAAGACCAGTCTTAATTCAATTATTTGGGTTTTCTAACACTAGAAGTTCTCTACATTTTTTACTGGCAAAGAAATCTACGTTGAAGGTGTTCCATATTTTGAGGATACATCGTGAAATGAGAAGTTTTGTAGTGGCTGCTAACTTACTAGAACCCTCCTCATTTATTGGGCTTGAGATTGGCAAAGGCGAAGCAGCTATCTATAATATCTGTCTTTCTTCTCTTTTATTGTTTTATTGTCGTTTTATGTTCTATTCGGGGCAACACAGGTTGTGCTCTCCGAAAACATAATTTCAATTTTCTATTCAATTCAAAATTCAAATTGTAGTATGATACTTTTCTGATATCTGATAATTCTATATCGGGAACATATATAAATAATATATATCCGTCTAACAATTTATCTTGGGGGGTTCACATATACTGATAATTGTTGTTATAATTATTATTAATAATTAAAATTGAGAAGGATTTTTTGATTGCAAATATCCATACTGAACTGATTAGTTATATATTATATATCAAGTTGTATTTTGTTATATCATTAGGATCTTTGCTTTTAGAAAGCCAATTTGACCTCTTGTATGGTAAAAGACACCTCTAGATTACACAAGGTCCACATTTGTGAACCTTTGACACCCAGAGGTTTTCTTGGCTAATTCTCTGGTTTACTGTGATGTTTACCAAAAGGTTTGACTCAAATTAATGAAACTAAGATGTTGAGACATTCGTTTTTTTTAAAAATGACTCAACTAACAGAATATATTTCTCATTCTTTTCTAATGTTATTGTATTTTGTTTTCTTTCACAAACTATACTTCATAATTTACTTAGAGAAGTTGATTAGTAGCTGTCTCCCTACCCTGCAGCTGTGAGCTTTTATGATCCTAGTTGCTGTATTCTTCAGCATTGTGGACATGCTGGACACCATAAAAAATGTTATATTAAAAAATAAAAATAGAAAAGAAGATACTAACACAGATCTTAATAAATCTACAAAATGACCTATATTCTCTAAACCTACTTCTTTACACCAAAAGTAGAAAGATATTATACAATTCCATTTAACTTTTCTTAGTCACGTTTAGCATATCTATCTAGTTGCCTTTCCTCTTCCCATACAAATAAATATTATTATCTTGACAAACTAATTCCCTTGATTGTTTCTTGAATTTTATACCCAAACATGTTCTGTTTCAAGGTTCTTAATTAATATTGTTTGTCACAGGAGCTGCTGTTGATGGAGACGCAGGACAAACTGACCGAAATAACATTGAGAGAAACAGTGCTGTCACTGGTCCAAGTAACCGTGATGAAGTTTCTCGGTTACCTGTGCCTGCAATTAGGTAAAACGGTCTTGACGAAGACTGTCAACTTACTATTTACTAGTGTAGATAGTCCTCAAAATATCTTAAACTCAGTTAACATGGACAGGGACATGGCTCCTGTGAAGTATGTCCGTCCAGTTTTGCATGGAGATACACAATTATCAGACCCAAGAGATATAGGGAATGATATGCGATTTCTTGAGAGAGGAAGTCAACTTGTTCCCTCTAAAATAAGTAGAGACATTGCCCTTGAAATAGAAGATTTTGATATACCCTGGGAAGATCTTGTTCTGAAGGAGAGGATTGGGGCAGGTAATCCCTGCCTGCTATCTTTTGTATCCTCATTTTTAGTCTCGTGCTATGATTGTCTCAGTACATGTTAGTGATATTGGGATGCTAGAGTATCATAGCATCCTCTTCTCATGTACCTAACACTGATTGTTGCATCTCAGGGTCTTTTGGTACTGTTCACCGTGCTGATTGGAATGGTTCTGTAAGACATCTCCTTTTAGTTCTGCATCCTTGATACTCGTTTTTGTTATATCAGTTAACTCATTTAGCACTTCGGAGAAGCATTTATTCAGTGTAATTTTTGTAAATGATTTGGGTGTTTATTTATTTCTATTTTGTTTTTGGCCTGATCCACTTCTCGAATAAATGTTGTTGGTTTATCTGTTGATCTCTCTCTTTTGTTTTCCTTATTTGAGATTATCTTTCTGAATTACCCTGTCTCGTTTGGTTTTATTCCTTCATAATTGCATGCTGATGGAAGTTTCAAATTACTTTAGGATGTTGCTGTGAAGATACTCATGGAACAAGATTTTCATGC</genome_strand>
        <mrna_strand>CGATTGTCTAGGATCCACTGTGCTTCCCATTGGTAGCCTGTCTGTTGGCCTTTGCAGGTATCGAGCTTTGCTATTTAAA.............................................................................................................................................................................................................................................................GTTCTAGCTGACGCCATTGGTTTACCATGTCGAATTGCCAAAGGATGTAAATATTGTAACAGAGCTGATGCTTCCTCATGTTTAGTTCGTTTTGGACCTGACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTACCTGGTTGATTTGATTGGGAGCCCTGGATGCTTATGCGAACCAGATTCCTCGCTCAACGGCCCATCTTCTATCTCAATCTCTTCACCATTGCGATTTCCGAGATTCAGAGAAGTTGAACCGACAACTGATTTCAGGTCACTTGCCAAACAGTATTTCTCGGATTGTCAATCGCTTAATCTTGTGTTTGAGGAATCTTCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGCTGTTGATGGAGACGCAGGACAAACTGACCGAAATAACATTGAGAGAAACAGTGCTGTCACTGGTCCAAGTAACCGTGATGAAGTTTCTCGGTTACCTGTGCCTGCAATTAG........................................................................................GGACATGGCTCCTGTGAAGTATGTCCGTCCAGTTTTGCATGGAGATACACAATTATCAGACCCAAGAGATATAGGGAATGATATGCGATTTCTTGAGAGAGGAAGTCAACTTGTTCCCTCTAAAATAAGTAGAGACATTGCCCTTGAAATAGAAGATTTTGATATACCCTGGGAAGATCTTGTTCTGAAGGAGAGGATTGGGGCAG............................................................................................................................................GGTCTTTTGGTACTGTTCACCGTGCTGATTGGAATGGTTCT.......................................................................................................................................................................................................................................................................................................GATGTTGCTGTGAAGATACTCATGGAACAAGATTTTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E355067" ref_strand="-" ref_description="SGN-E355067 [cTOS-18-A4]">
      <seq>ttgttaatcatcttctgggaggaacaaatctttgtttacttcaggcttttgttccgtacatattagttcagaatgcccgtctagagccattttttttcttcacaaattcaagcagccatttctcccagaagagcatttgcaattgacttgtacgtttcctcgtggaaataatgtctagccatatgattttgttaatgtaagcaaataacagttcttctattttctatcaagaaatgattttgtacgtacaagaatttataatgggaatgcacagttcgtatcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="67476" stop="68580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67776" g_stop="67819" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67820" i_stop="68041" i_length="222">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68042" g_stop="68287" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="290" r_length="246" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E355067" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355067" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67776" e_stop="67819"/>
          <exon e_start="68042" e_stop="68287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAATCATCTTCTGGGAGGAACAAATCTTTGTTTACTTCAGGTTCGTGTATCCTGAAGTCTCTCTCTTCCTTCTGCTTAAATTTTACATTTGTCTTGATGTACACATGTTACTCCAACTTAAGTCGAAGTTGGAAGTGTTGGTGATTGTTTCGACTTTCTGACTTCAACTTGGCAGATGTGAAGAGGGTTCACCTCTTAGCTTCCTATGCTGTTTCGTTTGATAGTATGTGAGCTTGTAACAACCTTTTTTTTTTATTTACAGGCTTTTGTTCCGTACATATTAGTTCAGAATGCCCGTCTAGAGCCATTTTTTTTCTTCACAAATTCAAGCAGCCATTTCTCCCAGAAGAGCATTTGCAATTGACTTGTACGTTTCCTCGTGGAAATAATGTCTAGCCATATGATTTTGTTAATGTAAGCAAATAACAGTTCTTCTATTTTCTATCAAGAAATGATTTTGTACGTACAAGAATTTATAATGGGAATGCACAGTTCGTATCACGTCTTT</genome_strand>
        <mrna_strand>TTGTTAATCATCTTCTGGGAGGAACAAATCTTTGTTTACTTCAG..............................................................................................................................................................................................................................GCTTTTGTTCCGTACATATTAGTTCAGAATGCCCGTCTAGAGCCATTTTTTTTCTTCACAAATTCAAGCAGCCATTTCTCCCAGAAGAGCATTTGCAATTGACTTGTACGTTTCCTCGTGGAAATAATGTCTAGCCATATGATTTTGTTAATGTAAGCAAATAACAGTTCTTCTATTTTCTATCAAGAAATGATTTTGTACGTACAAGAATTTATAATGGGAATGCACAGTTCGTATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E356143" ref_strand="-" ref_description="SGN-E356143 [cTOS-20-I21]">
      <seq>ttgttaatcatcttctgggaggaacaaatctttgtttacttcaggcttttgttccgtacatattagttcagaatgcccgtctagagccattttttttcttcacaaattcaagcagccatttctcccagaagagcatttgcaattgacttgtacgtttcctcgtggaaataatgtctagccatatgattttgttaatgtaagcaaataacagttcttctattttctatcaagaaatgattttgtacgtacaagaatttataatgggaatgcacagttcgtatcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="67476" stop="68580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67776" g_stop="67819" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67820" i_stop="68041" i_length="222">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68042" g_stop="68287" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="290" r_length="246" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E356143" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356143" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="67776" e_stop="67819"/>
          <exon e_start="68042" e_stop="68287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAATCATCTTCTGGGAGGAACAAATCTTTGTTTACTTCAGGTTCGTGTATCCTGAAGTCTCTCTCTTCCTTCTGCTTAAATTTTACATTTGTCTTGATGTACACATGTTACTCCAACTTAAGTCGAAGTTGGAAGTGTTGGTGATTGTTTCGACTTTCTGACTTCAACTTGGCAGATGTGAAGAGGGTTCACCTCTTAGCTTCCTATGCTGTTTCGTTTGATAGTATGTGAGCTTGTAACAACCTTTTTTTTTTATTTACAGGCTTTTGTTCCGTACATATTAGTTCAGAATGCCCGTCTAGAGCCATTTTTTTTCTTCACAAATTCAAGCAGCCATTTCTCCCAGAAGAGCATTTGCAATTGACTTGTACGTTTCCTCGTGGAAATAATGTCTAGCCATATGATTTTGTTAATGTAAGCAAATAACAGTTCTTCTATTTTCTATCAAGAAATGATTTTGTACGTACAAGAATTTATAATGGGAATGCACAGTTCGTATCACGTCTTT</genome_strand>
        <mrna_strand>TTGTTAATCATCTTCTGGGAGGAACAAATCTTTGTTTACTTCAG..............................................................................................................................................................................................................................GCTTTTGTTCCGTACATATTAGTTCAGAATGCCCGTCTAGAGCCATTTTTTTTCTTCACAAATTCAAGCAGCCATTTCTCCCAGAAGAGCATTTGCAATTGACTTGTACGTTTCCTCGTGGAAATAATGTCTAGCCATATGATTTTGTTAATGTAAGCAAATAACAGTTCTTCTATTTTCTATCAAGAAATGATTTTGTACGTACAAGAATTTATAATGGGAATGCACAGTTCGTATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E577615" ref_strand="-" ref_description="SGN-E577615 [LE15AG06]">
      <seq>tagatatttcctgctaacatatactcttttaagttgtgaaatacgcaggtttgcagcactgaaggcgagtatgggacttctttagagaatttcggacttgaatgagtgaatgacattgctcgctcaagctttttccagtcgattcttctgtaattgcttgcttggatcttgtaccctcgcctaggcaaagcaatgatgtacatcagaaacagctggcgaagtccttctcagggcttagctcaggtggcaaaggtcgagggaagttcaagccttgcatcatgcgaactaagcctgatatttaagtggacattgtgtttggttccaagggttgggccagactgatttcttggttatcaagaaaaagatcctgctcagctattcggttccccttagcttatttgtatatatctaaatgtgtaggatgttcatcaggggcaatctgattattgttgtgtcaatgtaataattgataggttatcctggcaaaccatttgagaagtatctgtactgtgatattgatagggggaagaaatggtcatcagaaaggtgattagacatgacaaacttatagcttaccatggatatgattcctaaataagaggatattggggttgatcattagggtagaacattagtaagtagtccaacattgtttagtttccttattattgttctcctagtttcgtattctgcaattttagtattatctgttgttcctttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="71402" stop="68540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71102" g_stop="70965" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70964" i_stop="69425" i_length="1540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69424" g_stop="68833" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="730" r_length="592" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E577615" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577615" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71102" e_stop="70965"/>
          <exon e_start="69424" e_stop="68833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATATTTCCTGCTAACATATACTCTTTTAAGTTGTGAAATACGCAGGTTTGCAGCACTGAAGGCGAGTATGGGACTTCTTTAGAGAATTTCGGACTTGAATGAGTGAATGACATTGCTCGCTCAAGCTTTTTCCAGGTAAGGAGATCTTGTGGTGACTTATCATATGATTGCTTGATGAATTATTACTTTACCAGAATTCTTTGAGATGCAGCTGAATAACATGCACAGATGATGTTTTGGCATGATTTAATCTAAAAAACTAGCATGATTTAATCTAAAAAACTAGCTCATGAGGGGAGTATTCTCCAAGACAACAACCATTTCCTCAACCAACGTGGAGATAGTATAAGAGTCGGACCTATTTCAATTCTTGGTCTATCCGATGTTAGACCTCATTTGTACTGTTCATACTTCAAATGTCCCGGCATGGGCAATGCTGGGAGGGAAGGGGTGTTAAAAGTTACACTGGTAGTGAGATAGTTAACTAGTCTCCTTGTCTATGTTGCTTGGCCTCTCCAAAAATGTCGCCGCACTCGTGTCGGGATCCTCCAAAAAAGCACTATTTTTGGAGTATCCAAACCACACCCATAGACATCTTTGAAGAGTCTGAGCATCATAGCTCCTTGTATGGTCTTGGGCAATACTCGCCTCATGAGCTAGCTTTTGAAGGTTGAGTTAGGCCCGAGGTCCATTCTCTTATGGTATCAGACTCGAGCTTTGCTAAGCCAATTTGTACAATTGTCTTATTTCTATCTACTGTAATGCTCTGGGAGTTCTCTCAACTTGGTCATGGAGCCACTCTGAGCTTCTTCTCTCTCCCAATTCAGCTCATCGAGTCACAAAATTTTGATCTTTCCCCACTTTTTAGCCATTTGAGCCTACTCTCCTCATTTCCAGGCCCATTCTTCAGCCAGTTGATACTGATCTTTGTCTCTCTGTATCATGTCTACTCTTCGATGTGCTTAAAAAAAAGGATTTTGAATCCACGTGTAGACTCAAGATTTCAGTTACATGTGCAGGAGGGTGTTAGAGAACTTGTCTCTCATCGAGTTTGTAAAATTTTTCAAAAGGTTTTATAATGTATGGGGCCACTGCAGTCATTATCCTTAAGTTTCTGAATTGGATGATCTGGTTATTTGATTCTTATGTTAGTGCACTACTTTTTGTATTTTGACTCACCAAGCTCCGCTGGTGGCTGAAGTTTCTCTTTCTCAGATGAAACGAAAAACAAAGAAGGTGAATTAGTATAACTCCTTCAGGGCTTCCGCTTCCTCCCCATTTACCATAAATTTACTGAAGAACACTTTAGGAGACTCATACGGTCCTAGGTAGCTTATTATAGAAATATAAGAAAGACGAGGTGGAGGAACGGAAGACTCTAGCAGTGTTGGTAGAGTCAATAAATTTGTTTCCTTAAGATGCTACAGGGTACAAACCAGAGTTAATGTTATGACTAACGACGCCCACCCTTTTAGAGACACGTTAGAGGTAACATAATCAATCAATTTAAAAATTGTGAATTTGTCTGTATCGCGGGCTGATGTCAAACAATCTTTTCTGTGTCATGTTGAGTAGGTTGACCTTTTGAAAGTGTTCGATGCTTAAATAGCTTACACAAAACAGTATTCAAATTTTTGAACCCTTAAATTTGTGTTGAACTTCTCTTCCGGTGCAGTCGATTCTTCTGTAATTGCTTGCTTGGATCTTGTACCCTCGCCTAGGCAAAGCAATGATGTACATCAGAAACAGCTGGCGAAGTCCTTCTCAGGGCTTAGCTCAGGTGGCAAAGGTCGAGGGAAGTTCAAGCCTTGCATCATGCGAACTAAGCCTGATATTTAAGTGGACATTGTGTTTGGTTCCAAGGGTTGGGCCAGACTGATTTCTTGGTTATCAAGAAAAAGATCCTGCTCAGCTATTCGGTTCCCCTTAGCTTATTTGTATATATCTAAATGTGTAGGATGTTCATCAGGGGCAATCTGATTATTGTTGTGTCAATGTAATAATTGATAGGTTATCCTGGCAAACCATTTGAGAAGTATCTGTACTGTGATATTGATAGGGGGAAGAAATGGTCATCAGAAAGGTGATTAGACATGACAAACTTATAGCTTACCATGGATATGATTCCTAAATAAGAGGATATTGGGGTTGATCATTAGGGTAGAACATTAGTAAGTAGTCCAACATTGTTTAGTTTCCTTATTATTGTTCTCCTAGTTTCGTATTCTGCAATTTTAGTATTATCTGTTGTTCCTTTTTATTTTTGT</genome_strand>
        <mrna_strand>TAGATATTTCCTGCTAACATATACTCTTTTAAGTTGTGAAATACGCAGGTTTGCAGCACTGAAGGCGAGTATGGGACTTCTTTAGAGAATTTCGGACTTGAATGAGTGAATGACATTGCTCGCTCAAGCTTTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTCTTCTGTAATTGCTTGCTTGGATCTTGTACCCTCGCCTAGGCAAAGCAATGATGTACATCAGAAACAGCTGGCGAAGTCCTTCTCAGGGCTTAGCTCAGGTGGCAAAGGTCGAGGGAAGTTCAAGCCTTGCATCATGCGAACTAAGCCTGATATTTAAGTGGACATTGTGTTTGGTTCCAAGGGTTGGGCCAGACTGATTTCTTGGTTATCAAGAAAAAGATCCTGCTCAGCTATTCGGTTCCCCTTAGCTTATTTGTATATATCTAAATGTGTAGGATGTTCATCAGGGGCAATCTGATTATTGTTGTGTCAATGTAATAATTGATAGGTTATCCTGGCAAACCATTTGAGAAGTATCTGTACTGTGATATTGATAGGGGGAAGAAATGGTCATCAGAAAGGTGATTAGACATGACAAACTTATAGCTTACCATGGATATGATTCCTAAATAAGAGGATATTGGGGTTGATCATTAGGGTAGAACATTAGTAAGTAGTCCAACATTGTTTAGTTTCCTTATTATTGTTCTCCTAGTTTCGTATTCTGCAATTTTAGTATTATCTGTTGTTCCTTTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E375909" ref_strand="-" ref_description="SGN-E375909 [TUS-15-M22]">
      <seq>tttaagttgtgaatacgncaggtttgcagcactgaaggcgagtatgggacttctttagagaatttcggacttgaatgagtgaatgacattgctcgctcaagctttttccagtcgattcttctgtaattgcttgcttggatcttgtaccctcgcctaggcaaagcaatgatgtacatcagaaacagctggcgaagtccttctcagggcttagctcaggtggcaaaggtcgagggaagttcaagccttgcatcatgcgaactaagcctgatatttaagtggacattgtgtttggttccaagggttgggccagactgatttcttggttatcaagaaaaagatcctgctcagctattcggttccccttagcttatttgtatatatctaaatgtgtaggatgttcatcaggggcaatctgattattgttgtgtcaatgtaataattgataggttatcctggcaaaccatttgagaagtatctgtactgtgatattgatagggggaagaaatggtcatcagaaaggtgattagacatgacaaacttatagcttaccatggatatgattcctaaataagaggatattggggttgatcattagggtagaacattagtaagtagtccaacattgtttagtttccttattattgttctcctagtttcgtattctgcaattttagtattatctgttgttcctttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="71375" stop="68540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71075" g_stop="70965" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70964" i_stop="69425" i_length="1540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69424" g_stop="68841" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="695" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="705"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E375909" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375909" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71075" e_stop="70965"/>
          <exon e_start="69424" e_stop="68841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGTTGTGAAATACG-CAGGTTTGCAGCACTGAAGGCGAGTATGGGACTTCTTTAGAGAATTTCGGACTTGAATGAGTGAATGACATTGCTCGCTCAAGCTTTTTCCAGGTAAGGAGATCTTGTGGTGACTTATCATATGATTGCTTGATGAATTATTACTTTACCAGAATTCTTTGAGATGCAGCTGAATAACATGCACAGATGATGTTTTGGCATGATTTAATCTAAAAAACTAGCATGATTTAATCTAAAAAACTAGCTCATGAGGGGAGTATTCTCCAAGACAACAACCATTTCCTCAACCAACGTGGAGATAGTATAAGAGTCGGACCTATTTCAATTCTTGGTCTATCCGATGTTAGACCTCATTTGTACTGTTCATACTTCAAATGTCCCGGCATGGGCAATGCTGGGAGGGAAGGGGTGTTAAAAGTTACACTGGTAGTGAGATAGTTAACTAGTCTCCTTGTCTATGTTGCTTGGCCTCTCCAAAAATGTCGCCGCACTCGTGTCGGGATCCTCCAAAAAAGCACTATTTTTGGAGTATCCAAACCACACCCATAGACATCTTTGAAGAGTCTGAGCATCATAGCTCCTTGTATGGTCTTGGGCAATACTCGCCTCATGAGCTAGCTTTTGAAGGTTGAGTTAGGCCCGAGGTCCATTCTCTTATGGTATCAGACTCGAGCTTTGCTAAGCCAATTTGTACAATTGTCTTATTTCTATCTACTGTAATGCTCTGGGAGTTCTCTCAACTTGGTCATGGAGCCACTCTGAGCTTCTTCTCTCTCCCAATTCAGCTCATCGAGTCACAAAATTTTGATCTTTCCCCACTTTTTAGCCATTTGAGCCTACTCTCCTCATTTCCAGGCCCATTCTTCAGCCAGTTGATACTGATCTTTGTCTCTCTGTATCATGTCTACTCTTCGATGTGCTTAAAAAAAAGGATTTTGAATCCACGTGTAGACTCAAGATTTCAGTTACATGTGCAGGAGGGTGTTAGAGAACTTGTCTCTCATCGAGTTTGTAAAATTTTTCAAAAGGTTTTATAATGTATGGGGCCACTGCAGTCATTATCCTTAAGTTTCTGAATTGGATGATCTGGTTATTTGATTCTTATGTTAGTGCACTACTTTTTGTATTTTGACTCACCAAGCTCCGCTGGTGGCTGAAGTTTCTCTTTCTCAGATGAAACGAAAAACAAAGAAGGTGAATTAGTATAACTCCTTCAGGGCTTCCGCTTCCTCCCCATTTACCATAAATTTACTGAAGAACACTTTAGGAGACTCATACGGTCCTAGGTAGCTTATTATAGAAATATAAGAAAGACGAGGTGGAGGAACGGAAGACTCTAGCAGTGTTGGTAGAGTCAATAAATTTGTTTCCTTAAGATGCTACAGGGTACAAACCAGAGTTAATGTTATGACTAACGACGCCCACCCTTTTAGAGACACGTTAGAGGTAACATAATCAATCAATTTAAAAATTGTGAATTTGTCTGTATCGCGGGCTGATGTCAAACAATCTTTTCTGTGTCATGTTGAGTAGGTTGACCTTTTGAAAGTGTTCGATGCTTAAATAGCTTACACAAAACAGTATTCAAATTTTTGAACCCTTAAATTTGTGTTGAACTTCTCTTCCGGTGCAGTCGATTCTTCTGTAATTGCTTGCTTGGATCTTGTACCCTCGCCTAGGCAAAGCAATGATGTACATCAGAAACAGCTGGCGAAGTCCTTCTCAGGGCTTAGCTCAGGTGGCAAAGGTCGAGGGAAGTTCAAGCCTTGCATCATGCGAACTAAGCCTGATATTTAAGTGGACATTGTGTTTGGTTCCAAGGGTTGGGCCAGACTGATTTCTTGGTTATCAAGAAAAAGATCCTGCTCAGCTATTCGGTTCCCCTTAGCTTATTTGTATATATCTAAATGTGTAGGATGTTCATCAGGGGCAATCTGATTATTGTTGTGTCAATGTAATAATTGATAGGTTATCCTGGCAAACCATTTGAGAAGTATCTGTACTGTGATATTGATAGGGGGAAGAAATGGTCATCAGAAAGGTGATTAGACATGACAAACTTATAGCTTACCATGGATATGATTCCTAAATAAGAGGATATTGGGGTTGATCATTAGGGTAGAACATTAGTAAGTAGTCCAACATTGTTTAGTTTCCTTATTATTGTTCTCCTAGTTTCGTATTCTGCAATTTTAGTATTATCTGTTGTTCCTTTTT</genome_strand>
        <mrna_strand>TTTAAGTTGTG-AATACGNCAGGTTTGCAGCACTGAAGGCGAGTATGGGACTTCTTTAGAGAATTTCGGACTTGAATGAGTGAATGACATTGCTCGCTCAAGCTTTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTCTTCTGTAATTGCTTGCTTGGATCTTGTACCCTCGCCTAGGCAAAGCAATGATGTACATCAGAAACAGCTGGCGAAGTCCTTCTCAGGGCTTAGCTCAGGTGGCAAAGGTCGAGGGAAGTTCAAGCCTTGCATCATGCGAACTAAGCCTGATATTTAAGTGGACATTGTGTTTGGTTCCAAGGGTTGGGCCAGACTGATTTCTTGGTTATCAAGAAAAAGATCCTGCTCAGCTATTCGGTTCCCCTTAGCTTATTTGTATATATCTAAATGTGTAGGATGTTCATCAGGGGCAATCTGATTATTGTTGTGTCAATGTAATAATTGATAGGTTATCCTGGCAAACCATTTGAGAAGTATCTGTACTGTGATATTGATAGGGGGAAGAAATGGTCATCAGAAAGGTGATTAGACATGACAAACTTATAGCTTACCATGGATATGATTCCTAAATAAGAGGATATTGGGGTTGATCATTAGGGTAGAACATTAGTAAGTAGTCCAACATTGTTTAGTTTCCTTATTATTGTTCTCCTAGTTTCGTATTCTGCAATTTTAGTATTATCTGTTGTTCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E249319" ref_strand="-" ref_description="SGN-E249319 [cLEF-50-I11]">
      <seq>cttgaatgagtgaatgacattgctcgctcaagctttttccagtcgattcttctgtaattgcttgcttggatcttgtaccctcgcctaggcaaagcaatgatgtacatcagaaacagctggcgaagtccttctcagggcttagctcaggtggcaaaggtcgagggaagttcaagccttgcatcatgcgaactaagcctgatatttaagtggacattgtgtttggttccaagggttgggccagactgatttcttggttatcaagaaaaagatcctgctcagctattcggttccccttagcttatttgtatatatctaaatgtgtaggatgttcatcaggggcaatctgattattgttgtgtcaatgtaataattgataggttatcctggcaaaccatttgagaagtatctgtactgtgatattgatagggggaagaaatggtcatcagaaaggtgattagacatgacaaacttatagcttaccatggatatgattcctaaataagaggatattggggttgatcattagggtagaacattagtaagtagtccaacattgtttagtttccttattattgttctcctagtttcgtattctgcaattttagtattatctgttgttcctttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="71306" stop="68540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71006" g_stop="70965" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70964" i_stop="69425" i_length="1540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69424" g_stop="68841" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="626" r_length="584" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E249319" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249319" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71006" e_stop="70965"/>
          <exon e_start="69424" e_stop="68841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAATGAGTGAATGACATTGCTCGCTCAAGCTTTTTCCAGGTAAGGAGATCTTGTGGTGACTTATCATATGATTGCTTGATGAATTATTACTTTACCAGAATTCTTTGAGATGCAGCTGAATAACATGCACAGATGATGTTTTGGCATGATTTAATCTAAAAAACTAGCATGATTTAATCTAAAAAACTAGCTCATGAGGGGAGTATTCTCCAAGACAACAACCATTTCCTCAACCAACGTGGAGATAGTATAAGAGTCGGACCTATTTCAATTCTTGGTCTATCCGATGTTAGACCTCATTTGTACTGTTCATACTTCAAATGTCCCGGCATGGGCAATGCTGGGAGGGAAGGGGTGTTAAAAGTTACACTGGTAGTGAGATAGTTAACTAGTCTCCTTGTCTATGTTGCTTGGCCTCTCCAAAAATGTCGCCGCACTCGTGTCGGGATCCTCCAAAAAAGCACTATTTTTGGAGTATCCAAACCACACCCATAGACATCTTTGAAGAGTCTGAGCATCATAGCTCCTTGTATGGTCTTGGGCAATACTCGCCTCATGAGCTAGCTTTTGAAGGTTGAGTTAGGCCCGAGGTCCATTCTCTTATGGTATCAGACTCGAGCTTTGCTAAGCCAATTTGTACAATTGTCTTATTTCTATCTACTGTAATGCTCTGGGAGTTCTCTCAACTTGGTCATGGAGCCACTCTGAGCTTCTTCTCTCTCCCAATTCAGCTCATCGAGTCACAAAATTTTGATCTTTCCCCACTTTTTAGCCATTTGAGCCTACTCTCCTCATTTCCAGGCCCATTCTTCAGCCAGTTGATACTGATCTTTGTCTCTCTGTATCATGTCTACTCTTCGATGTGCTTAAAAAAAAGGATTTTGAATCCACGTGTAGACTCAAGATTTCAGTTACATGTGCAGGAGGGTGTTAGAGAACTTGTCTCTCATCGAGTTTGTAAAATTTTTCAAAAGGTTTTATAATGTATGGGGCCACTGCAGTCATTATCCTTAAGTTTCTGAATTGGATGATCTGGTTATTTGATTCTTATGTTAGTGCACTACTTTTTGTATTTTGACTCACCAAGCTCCGCTGGTGGCTGAAGTTTCTCTTTCTCAGATGAAACGAAAAACAAAGAAGGTGAATTAGTATAACTCCTTCAGGGCTTCCGCTTCCTCCCCATTTACCATAAATTTACTGAAGAACACTTTAGGAGACTCATACGGTCCTAGGTAGCTTATTATAGAAATATAAGAAAGACGAGGTGGAGGAACGGAAGACTCTAGCAGTGTTGGTAGAGTCAATAAATTTGTTTCCTTAAGATGCTACAGGGTACAAACCAGAGTTAATGTTATGACTAACGACGCCCACCCTTTTAGAGACACGTTAGAGGTAACATAATCAATCAATTTAAAAATTGTGAATTTGTCTGTATCGCGGGCTGATGTCAAACAATCTTTTCTGTGTCATGTTGAGTAGGTTGACCTTTTGAAAGTGTTCGATGCTTAAATAGCTTACACAAAACAGTATTCAAATTTTTGAACCCTTAAATTTGTGTTGAACTTCTCTTCCGGTGCAGTCGATTCTTCTGTAATTGCTTGCTTGGATCTTGTACCCTCGCCTAGGCAAAGCAATGATGTACATCAGAAACAGCTGGCGAAGTCCTTCTCAGGGCTTAGCTCAGGTGGCAAAGGTCGAGGGAAGTTCAAGCCTTGCATCATGCGAACTAAGCCTGATATTTAAGTGGACATTGTGTTTGGTTCCAAGGGTTGGGCCAGACTGATTTCTTGGTTATCAAGAAAAAGATCCTGCTCAGCTATTCGGTTCCCCTTAGCTTATTTGTATATATCTAAATGTGTAGGATGTTCATCAGGGGCAATCTGATTATTGTTGTGTCAATGTAATAATTGATAGGTTATCCTGGCAAACCATTTGAGAAGTATCTGTACTGTGATATTGATAGGGGGAAGAAATGGTCATCAGAAAGGTGATTAGACATGACAAACTTATAGCTTACCATGGATATGATTCCTAAATAAGAGGATATTGGGGTTGATCATTAGGGTAGAACATTAGTAAGTAGTCCAACATTGTTTAGTTTCCTTATTATTGTTCTCCTAGTTTCGTATTCTGCAATTTTAGTATTATCTGTTGTTCCTTTTT</genome_strand>
        <mrna_strand>CTTGAATGAGTGAATGACATTGCTCGCTCAAGCTTTTTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTCTTCTGTAATTGCTTGCTTGGATCTTGTACCCTCGCCTAGGCAAAGCAATGATGTACATCAGAAACAGCTGGCGAAGTCCTTCTCAGGGCTTAGCTCAGGTGGCAAAGGTCGAGGGAAGTTCAAGCCTTGCATCATGCGAACTAAGCCTGATATTTAAGTGGACATTGTGTTTGGTTCCAAGGGTTGGGCCAGACTGATTTCTTGGTTATCAAGAAAAAGATCCTGCTCAGCTATTCGGTTCCCCTTAGCTTATTTGTATATATCTAAATGTGTAGGATGTTCATCAGGGGCAATCTGATTATTGTTGTGTCAATGTAATAATTGATAGGTTATCCTGGCAAACCATTTGAGAAGTATCTGTACTGTGATATTGATAGGGGGAAGAAATGGTCATCAGAAAGGTGATTAGACATGACAAACTTATAGCTTACCATGGATATGATTCCTAAATAAGAGGATATTGGGGTTGATCATTAGGGTAGAACATTAGTAAGTAGTCCAACATTGTTTAGTTTCCTTATTATTGTTCTCCTAGTTTCGTATTCTGCAATTTTAGTATTATCTGTTGTTCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E212994" ref_strand="+" ref_description="SGN-E212994 [cLEC-72-E4]">
      <seq>agagttgtttacaggagatatttcttggtttgtatgtcggcgttacctatataaacctcccttcaaccccttttaccgactttttatctatcacccttatcgaaattttgaatcttttgatcacaaaaactattaaagtttcaatctttgatccataaaaaccacaaatctctttgtatgatatgaacccatttgataaaaaacaagaatctgatactgatacaaaaaccccatttttgactgaaatggactctgaatttgctgcgttttcaccaatttcactcccttttgctgacccatcttctccttttatcaattttggatcttttgccactcctttgagccaacatccagttggagaaggggaaggagaaggagaagggggagaaattgaacagccagctgagggaggattgggtgtgccgcagcctatggagtgtttacatgggatacaaattccgccatttttgtcaaagacttttgatttggttgaggaccctttattggatacgattatttcttggggtagaaatggagaaagctttgtagtttgggatccagtggagttttcaagattggttcttcctaggaatttcaagcacagtaatttctccagctttgttcgacagcttaatacatatgtttgcagcactgaaggcgagtatgggacttctttagagaatttcggacttgaatgagtgaatgacattgctcgctcaagctttttccagtcgattcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="74030" stop="70665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73730" g_stop="73090" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73089" i_stop="71055" i_length="2035">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71054" g_stop="70965" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="731" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E212994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73730" e_stop="73090"/>
          <exon e_start="71054" e_stop="70965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCTCTTTTTAATGATATTTTTTCCTTGTATGTAATTTCTGTTGTAGTTTTTCATGTATCTTTATTTTTTCCCTCATTTTTCTGTAGTTTGTTTGCTCTTTTGTTGTTGATATACTGTAAAGATAATGTCTTAGGATGTAAATGTAAATAGATTTTTCGCGTTGTAAACAGTATAGGCTCCTGCGATTGTAAATGAGAGTTGGAGAACTGTTTTTTCTTCTTGATAGTTCAATGTTTTTGGCATCTTGTGTAAATGATGTCATTGAGATCTTTAGTGGATAGTAAAATGGTGGGTTCTTAAGTAAAATGGTAAAGAGGTGCGCTGTTCGTGATGTGGGCTTGTAGATAAAGCTCCCTGCATTGATGCATCTGCTGAGTTTGGGAGGTTCATCTATTGCTGCAGGTAGAATTCAAAGGTTCTGATTAAACAGAGTGTTTAAGCTTTGTAGTTTATATATGGTCTAACTTCAAAAGATCTACTAATTGTGTATTTCTAGTGTAATGCAGCTCCTGGAACTCATGAAAATTTGACAGTTAGCATCTTGCTTTATGTAAAAATTTCATTTTGTTATATGATCATTATTCTCATGTTGTAGGTCTGATAGTTTAGGACGATTTTTGTTTCTGAATTACTTTTGGGCACCTTTATTCAGGGATTTCGCAAAATCGATGCTGACAGGTGGGAGTTTGCGAATGAAGGGTTCTCGAGAGGGAAGAGGCATTTGTTGAAGAACATACAGAGGCGAAGGTCACATCAGGGTGGGAGTTCTTCTGGATCATCTGCTGAAGCAGGGAAAGGTACTATGGATGAGATAGAGAAACTCAGGAATGAGAAGAGTTTGATGATGCAGGAAGTTGTTGAGTTGCAGCAGCAGCAGCGTGGAACAGTTCAACAAATGGAATCCGTTAATGAAAAGCTTCAGGCTGCAGAACAAAGACAGAAGCAGATGGTTTCATTCTTGGCCAAGGTGCTTCAAAATCCCACATTCTTGGCTCGTGTTCGGCAGATGAAGGAGCAAGGAGAAATTACTAGTCCAAGAACAATGAGGAAATTTGTTAAACATCAGTCACATGGTCCGGATGGAGTGGGGTCGTCTTCAATGGAAGGGCAGATAGTCAAGTTCAGGTCTGACTTTCAAGACCTTGCAGGATGCTTTGACAGCCCAGATTTCAATACAGTTGTGGATCAACAACTCCCAGAAATTGGTTTAGGAGCGGAAGCCATGCCTTTTGAAGGTGTTCCTGTTGCTGATGAACTGACAGTGGCACATGAACTTCTTAATTGTTCAGATCGGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCGATAAGTGGCCAGCTGATGGGTCTCCTTTTGGTCAGTCTGGAAGTCATGCAAACCAGCCCAAGAATGATAGTTTCTAGGAAAGAGTACCCTTGGGCCTTCAGTGTGCCATTGGGATACTGCCATCATTTAGTTGATGGGACATAATATTGAATGAGTGATTATAAATATTTTAGTTGATAATTACTTTTGACTGGTTCTTTTCTTCTATTCCCTCTCCTTGGTCTGCTATTTCTCCGCTAATTGTGCTGGACTGTGAATATTTGATGGCATAAATTGTAGATATTTCCTGCTAACATATACTCTTTTAAGTTGTGAAATACGCAGGTTTGCAGCACTGAAGGCGAGTATGGGACTTCTTTAGAGAATTTCGGACTTGAATGAGTGAATGACATTGCTCGCTCAAGCTTTTTCCAG</genome_strand>
        <mrna_strand>AGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAGCACTGAAGGCGAGTATGGGACTTCTTTAGAGAATTTCGGACTTGAATGAGTGAATGACATTGCTCGCTCAAGCTTTTTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E375910" ref_strand="+" ref_description="SGN-E375910 [TUS-15-M22]">
      <seq>ttcttaattgttcagatcaggaaatacgaggagcttcattctttaactccgaaggctctcaattcaaagggaagaatgtagctagtcctcaaatagaagttatgcccgagtactttgcctcttttccagaggagatggggaaggagaagaacgtttcaggattttccacaccagctattggaagtatggtgaaagatgaggaactttggggtatgggttttgaagccagtgctggcatgccaagcactggtgccgagttatgggatagtcgtagcagctatgttccagactttggtgttagctctggtttgtcagatttatgggatatagatcccttgcaggtagctggaagttctggggtcgataagtggccagctgatgggtctccttttggtcagtctggaagtcatgcaaaccagcccaagaatgatagtttctaggaaagagtacccttgggccttcagtgtgccattgggatactgccatcatttagttgatgggacataatattgaatgagtgattataaatattttagttgataattacttttgactggttcttttcttctattccctctccttggtctgctatttctccgctaattgtgctggactgtgaatatttgatggcataaattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="72041" stop="70802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71741" g_stop="71102" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E375910" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71741" e_stop="71102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAATTGTTCAGATCGGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCGATAAGTGGCCAGCTGATGGGTCTCCTTTTGGTCAGTCTGGAAGTCATGCAAACCAGCCCAAGAATGATAGTTTCTAGGAAAGAGTACCCTTGGGCCTTCAGTGTGCCATTGGGATACTGCCATCATTTAGTTGATGGGACATAATATTGAATGAGTGATTATAAATATTTTAGTTGATAATTACTTTTGACTGGTTCTTTTCTTCTATTCCCTCTCCTTGGTCTGCTATTTCTCCGCTAATTGTGCTGGACTGTGAATATTTGATGGCATAAATTGT</genome_strand>
        <mrna_strand>TTCTTAATTGTTCAGATCAGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCGATAAGTGGCCAGCTGATGGGTCTCCTTTTGGTCAGTCTGGAAGTCATGCAAACCAGCCCAAGAATGATAGTTTCTAGGAAAGAGTACCCTTGGGCCTTCAGTGTGCCATTGGGATACTGCCATCATTTAGTTGATGGGACATAATATTGAATGAGTGATTATAAATATTTTAGTTGATAATTACTTTTGACTGGTTCTTTTCTTCTATTCCCTCTCCTTGGTCTGCTATTTCTCCGCTAATTGTGCTGGACTGTGAATATTTGATGGCATAAATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E202156" ref_strand="+" ref_description="SGN-E202156 [cLEC-7-O12]">
      <seq>ttcttaattgttcagatcaggaaatacgaggagcttcattctttaactccgaaggctctcaattcaaagggaagaatgtagctagtcctcaaatagaagttatgcccgagtactttgcctcttttccagaggagatggggaaggagaagaacgtttcaggattttccacaccagctattggaagtatggtgaaagatgaggaactttggggtatgggttttgaagccagtgctggcatgccaagcactggtgccgagttatgggatagtcgtagcagctatgttccagactttggtgttagctctggtttgtcagatttatgggatatagatcccttgcaggtagctggaagttctggggtcgataagtggccagctgatgggtctccttttggtcagtctggaagtcatgcaaaccagcccaagaatgatagtttctaggaaagagtacccttgggccttcagtgtgccattgggatactgccatcatttagttgatgggacataatattgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="72041" stop="70927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71741" g_stop="71227" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E202156" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71741" e_stop="71227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAATTGTTCAGATCGGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCGATAAGTGGCCAGCTGATGGGTCTCCTTTTGGTCAGTCTGGAAGTCATGCAAACCAGCCCAAGAATGATAGTTTCTAGGAAAGAGTACCCTTGGGCCTTCAGTGTGCCATTGGGATACTGCCATCATTTAGTTGATGGGACATAATATTGAAT</genome_strand>
        <mrna_strand>TTCTTAATTGTTCAGATCAGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCGATAAGTGGCCAGCTGATGGGTCTCCTTTTGGTCAGTCTGGAAGTCATGCAAACCAGCCCAAGAATGATAGTTTCTAGGAAAGAGTACCCTTGGGCCTTCAGTGTGCCATTGGGATACTGCCATCATTTAGTTGATGGGACATAATATTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E207709" ref_strand="+" ref_description="SGN-E207709 [cLEC-32-C19]">
      <seq>ttcttaattgttcagatcaggaaatacgaggagcttcattctttaactccgaaggctctcaattcaaagggaagaatgtagctagtcctcaaatagaagttatgcccgagtactttgcctcttttccagaggagatggggaaggagaagaacgtttcaggattttccacaccagctattggaagtatggtgaaagatgaggaactttggggtatgggttttgaagccagtgctggcatgccaagcactggtgccgagttatgggatagtcgtagcagctatgttccagactttggtgttagctctggtttgtcagatttatgggatatagatcccttgcaggtagctggaagttctggggtcgataagtggccagctgatgggtctccttttggtcagtctggaagtcatgcaaaccagcccaagaatgatagtttctaggaaagagtacccttgggccttcagtgtgccattgggatactgccatcatttagttgatgggacataatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="72041" stop="70930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71741" g_stop="71230" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E207709" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71741" e_stop="71230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAATTGTTCAGATCGGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCGATAAGTGGCCAGCTGATGGGTCTCCTTTTGGTCAGTCTGGAAGTCATGCAAACCAGCCCAAGAATGATAGTTTCTAGGAAAGAGTACCCTTGGGCCTTCAGTGTGCCATTGGGATACTGCCATCATTTAGTTGATGGGACATAATATTG</genome_strand>
        <mrna_strand>TTCTTAATTGTTCAGATCAGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCGATAAGTGGCCAGCTGATGGGTCTCCTTTTGGTCAGTCTGGAAGTCATGCAAACCAGCCCAAGAATGATAGTTTCTAGGAAAGAGTACCCTTGGGCCTTCAGTGTGCCATTGGGATACTGCCATCATTTAGTTGATGGGACATAATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E202010" ref_strand="+" ref_description="SGN-E202010 [cLEC-7-D3]">
      <seq>ttcttaattgttcagatcaggaaatacgaggagcttcattctttaactccgaaggctctcaattcaaagggaagaatgtagctagtcctcaaatagaagttatgcccgagtactttgcctcttttccagaggagatggggaaggagaagaacgtttcaggattttccacaccagctattggaagtatggtgaaagatgaggaactttggggtatgggttttgaagccagtgctggcatgccaagcactggtgccgagttatgggatagtcgtagcagctatgttccagactttggtgttagctctggtttgtcagatttatgggatatagatcccttgcaggtagctggaagttctggggtcgataagtggccagctgatgggtctccttttggtcagtctggaagtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="72041" stop="71031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71741" g_stop="71331" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E202010" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71741" e_stop="71331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAATTGTTCAGATCGGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCGATAAGTGGCCAGCTGATGGGTCTCCTTTTGGTCAGTCTGGAAGTCATG</genome_strand>
        <mrna_strand>TTCTTAATTGTTCAGATCAGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCGATAAGTGGCCAGCTGATGGGTCTCCTTTTGGTCAGTCTGGAAGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E726359" ref_strand="+" ref_description="SGN-E726359 [LA11CD05]">
      <seq>ctatggatgagatagagaaactcaggaatgagaagagtttgatgatgcaggaagttgttgagttgcagcagcagcagcgtggaacagttcaacaaatggaatccgttaatgaaaagcttcaggctgcagaacaaagacagaagcagatggtttcattcttggccaaggtgcttcaaaatcccacattcttggctcgtgttcggcagatgaaggagcaaggagaaattactagtccaagaacaatgaggaaatttgttaaacatcagtcacatggtccggatggagtggggtcgtcttcaatggaagggcagatagtcaagttcaggtctgactttcaagaccttgcaggatgctttgacagcccagatttcaatacagttgtggatcaacaactcccagaaattggtttaggagcggaagccatgccttttgaaggtgttcctgttgctgatgaactgacagtggcacatgaacttcttaattgttcagatcgggaaatacgaggagcttcattctttaactccgaaggctctcaattcaaagggaagaatgtagctagtcctcaaatagaagttatgcccgagtactttgcctcttttccagaggagatggggaaggagaagaacgtttcaggattttccacaccagctattggaagtatggtgaaagatgaggaactttggggtatgggttttgaagccagtgctggcatgccaagcactggtgccgagttatgggatagtcgtagcagctatgttccagactttggtgttagctctggtttgtcagatttatgggatatagatcccttgcaggtagctggaagttctggggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="72515" stop="71079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72215" g_stop="71379" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="837" r_length="837" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E726359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72215" e_stop="71379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGGATGAGATAGAGAAACTCAGGAATGAGAAGAGTTTGATGATGCAGGAAGTTGTTGAGTTGCAGCAGCAGCAGCGTGGAACAGTTCAACAAATGGAATCCGTTAATGAAAAGCTTCAGGCTGCAGAACAAAGACAGAAGCAGATGGTTTCATTCTTGGCCAAGGTGCTTCAAAATCCCACATTCTTGGCTCGTGTTCGGCAGATGAAGGAGCAAGGAGAAATTACTAGTCCAAGAACAATGAGGAAATTTGTTAAACATCAGTCACATGGTCCGGATGGAGTGGGGTCGTCTTCAATGGAAGGGCAGATAGTCAAGTTCAGGTCTGACTTTCAAGACCTTGCAGGATGCTTTGACAGCCCAGATTTCAATACAGTTGTGGATCAACAACTCCCAGAAATTGGTTTAGGAGCGGAAGCCATGCCTTTTGAAGGTGTTCCTGTTGCTGATGAACTGACAGTGGCACATGAACTTCTTAATTGTTCAGATCGGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCG</genome_strand>
        <mrna_strand>CTATGGATGAGATAGAGAAACTCAGGAATGAGAAGAGTTTGATGATGCAGGAAGTTGTTGAGTTGCAGCAGCAGCAGCGTGGAACAGTTCAACAAATGGAATCCGTTAATGAAAAGCTTCAGGCTGCAGAACAAAGACAGAAGCAGATGGTTTCATTCTTGGCCAAGGTGCTTCAAAATCCCACATTCTTGGCTCGTGTTCGGCAGATGAAGGAGCAAGGAGAAATTACTAGTCCAAGAACAATGAGGAAATTTGTTAAACATCAGTCACATGGTCCGGATGGAGTGGGGTCGTCTTCAATGGAAGGGCAGATAGTCAAGTTCAGGTCTGACTTTCAAGACCTTGCAGGATGCTTTGACAGCCCAGATTTCAATACAGTTGTGGATCAACAACTCCCAGAAATTGGTTTAGGAGCGGAAGCCATGCCTTTTGAAGGTGTTCCTGTTGCTGATGAACTGACAGTGGCACATGAACTTCTTAATTGTTCAGATCGGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E204650" ref_strand="+" ref_description="SGN-E204650 [cLEC-14-K2]">
      <seq>ttcttaattgttcagatcaggaaatacgaggagcttcattctttaactccgaaggctctcaattcaaagggaagaatgtagctagtcctcaaatagaagttatgcccgagtactttgcctcttttccagaggagatggggaaggagaagaacgtttcatgattttccacaccagctattggaagtatggtgaaagatgaggaactttggggtatgggttttgaagccagtgctggcatgccaagcactggtgccgagttatgggatagtcgtagcagctatgttccagacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="72041" stop="71149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71741" g_stop="71449" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E204650" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71741" e_stop="71449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAATTGTTCAGATCGGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTT</genome_strand>
        <mrna_strand>TTCTTAATTGTTCAGATCAGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCATGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E315254" ref_strand="+" ref_description="SGN-E315254 [cTOA-24-A8]">
      <seq>ctttattggatacgattatttcttggggtagaaatggagaaagctttgtagtttgggatccagtggagttttcaagattggttcttcctaggaatttcaagcacagtaatttctccagctttgttcgacagcttaatacatatgtgggtattaattttagcacactggccaactttttctggctaatgtgttaaatctctagttctctaactctgtctctctttttaatgatattttttccttgtatgtaatttctgttgtagtttttcatgtatctttattttttccctcatttttctgtagtttgtttgctcttttgttgttgatatactgtaaagataatgtcttaggatgtaaatgtaaatagatttttcgcgttgtaaacagtataggctcctgcgattgtaaatgagagttggagaactgttttttcttcttgatagttcaatgtttttggcatcttgtgtaaatgatgtcattgagatctttagtggatagtaaaatggtgggttcttaaggaaaatggtaaagaggtgcgctgttcatgatgtgggcttgtagataaagctccctgcattgatgcatctgctgagtttgggaggttcatctattgctgcaggtagaattcaaaggttctgattaaacagagtgtttaagctttgtagtttatatatggtctaacttcaaagatctactaattgtgtatttctagtgtaatgcagctcctggaactcatgaaaatttgancagtagcatcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="73532" stop="72170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73232" g_stop="72470" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E315254" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73232" e_stop="72470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCTCTTTTTAATGATATTTTTTCCTTGTATGTAATTTCTGTTGTAGTTTTTCATGTATCTTTATTTTTTCCCTCATTTTTCTGTAGTTTGTTTGCTCTTTTGTTGTTGATATACTGTAAAGATAATGTCTTAGGATGTAAATGTAAATAGATTTTTCGCGTTGTAAACAGTATAGGCTCCTGCGATTGTAAATGAGAGTTGGAGAACTGTTTTTTCTTCTTGATAGTTCAATGTTTTTGGCATCTTGTGTAAATGATGTCATTGAGATCTTTAGTGGATAGTAAAATGGTGGGTTCTTAAGTAAAATGGTAAAGAGGTGCGCTGTTCGTGATGTGGGCTTGTAGATAAAGCTCCCTGCATTGATGCATCTGCTGAGTTTGGGAGGTTCATCTATTGCTGCAGGTAGAATTCAAAGGTTCTGATTAAACAGAGTGTTTAAGCTTTGTAGTTTATATATGGTCTAACTTCAAAAGATCTACTAATTGTGTATTTCTAGTGTAATGCAGCTCCTGGAACTCATGAAAATTTGACAGTTAGCATCTTGCT</genome_strand>
        <mrna_strand>CTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCTCTTTTTAATGATATTTTTTCCTTGTATGTAATTTCTGTTGTAGTTTTTCATGTATCTTTATTTTTTCCCTCATTTTTCTGTAGTTTGTTTGCTCTTTTGTTGTTGATATACTGTAAAGATAATGTCTTAGGATGTAAATGTAAATAGATTTTTCGCGTTGTAAACAGTATAGGCTCCTGCGATTGTAAATGAGAGTTGGAGAACTGTTTTTTCTTCTTGATAGTTCAATGTTTTTGGCATCTTGTGTAAATGATGTCATTGAGATCTTTAGTGGATAGTAAAATGGTGGGTTCTTAAGGAAAATGGTAAAGAGGTGCGCTGTTCATGATGTGGGCTTGTAGATAAAGCTCCCTGCATTGATGCATCTGCTGAGTTTGGGAGGTTCATCTATTGCTGCAGGTAGAATTCAAAGGTTCTGATTAAACAGAGTGTTTAAGCTTTGTAGTTTATATATGGTCTAACTTC-AAAGATCTACTAATTGTGTATTTCTAGTGTAATGCAGCTCCTGGAACTCATGAAAATTTGANCAGTAGCATCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E347162" ref_strand="+" ref_description="SGN-E347162 [cTOF-25-C4]">
      <seq>ttccgccatttttgtcaaagacttttgatttggttgaggaccctttattggatacgattatttcttggggtagaaatggagaaagctttgtagtttgggatccagtggagttttcaagattggttcttcctaggaatttcaagcacagtaatttctccagctttgttcgacagcttaatacatatgtgggtattaattttagcacactggccaactttttctggctaatgtgttaaatctctagttctctaactctgtctctctttttaatgatattttttccttgtatgtaatttctgttgtagtttttcatgtatctttattttttccctcatttttctgtagtttgtttgctcttttgttgttgatatactgtaaagataatgtcttaggatgtaaatgtaaatagatttttcgcgttgtaaacagtataggctcctgcgattgtaaatgagagttggagaactggtttttcttcttgatagttcaatgtttttggcatcttgtgtaaatgatgtcattgagatctttagtggatagtaaaatggtggggttcttanggaaaatggtaaagaggtgcgctgttcatgatgtgggcttgtagataaagctccctgcattgatgcatctgctgaggttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="73574" stop="72335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73274" g_stop="72635" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E347162" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73274" e_stop="72635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCTCTTTTTAATGATATTTTTTCCTTGTATGTAATTTCTGTTGTAGTTTTTCATGTATCTTTATTTTTTCCCTCATTTTTCTGTAGTTTGTTTGCTCTTTTGTTGTTGATATACTGTAAAGATAATGTCTTAGGATGTAAATGTAAATAGATTTTTCGCGTTGTAAACAGTATAGGCTCCTGCGATTGTAAATGAGAGTTGGAGAACTGTTTTTTCTTCTTGATAGTTCAATGTTTTTGGCATCTTGTGTAAATGATGTCATTGAGATCTTTAGTGGATAGTAAAATGGT-GGGTTCTTAAGTAAAATGGTAAAGAGGTGCGCTGTTCGTGATGTGGGCTTGTAGATAAAGCTCCCTGCATTGATGCATCTGCTGAGTTTGG</genome_strand>
        <mrna_strand>TTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCTCTTTTTAATGATATTTTTTCCTTGTATGTAATTTCTGTTGTAGTTTTTCATGTATCTTTATTTTTTCCCTCATTTTTCTGTAGTTTGTTTGCTCTTTTGTTGTTGATATACTGTAAAGATAATGTCTTAGGATGTAAATGTAAATAGATTTTTCGCGTTGTAAACAGTATAGGCTCCTGCGATTGTAAATGAGAGTTGGAGAACTGGTTTTTCTTCTTGATAGTTCAATGTTTTTGGCATCTTGTGTAAATGATGTCATTGAGATCTTTAGTGGATAGTAAAATGGTGGGGTTCTTANGGAAAATGGTAAAGAGGTGCGCTGTTCATGATGTGGGCTTGTAGATAAAGCTCCCTGCATTGATGCATCTGCTGAGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E740148" ref_strand="+" ref_description="SGN-E740148 [LC20BB08]">
      <seq>aacctcaatctctttgtatgatatgaacccatttgataaaaaacaagaatctgatactgatacaaaaaccccatttttgactgaaatggactctgaatttgctgcgttttcaccaatttcactcccttttgctgacccatcttctccttttatcaattttggatcttttgccactcctttgagccaacatccagttggagaaggggaaggagaaggagaagggggagaaattgaacagccagctgagggaggattgggtgtgccgcagcctatggagtgtttacatgggatacaaattccgccatttttgtcaaagacttttgatttggttgaggaccctttattggatacgattatttcttggggtagaaatggagaaagctttgtagtttgggatccagtggagttttcaagattggttcttcctaggaatttcaagcacagtaatttctccagctttgttcgacagcttaatacatatgtgggtattaattttagcacactggccaactttttctggctaatgtgttaaatctctagttctctaactctgtctctctttttaatgatattttttccttgtatgtaatttctgttgtagtttttcatgtatctttattttttccctcatttttctgtagtttgtttgctcttttgttgttgatatactgtaaagataatgtcttaggatgtaaatgtaaatagatttttcgcgttgtaaacaatataggctcctgcgattgtaaatgagagttggagaactgttttttcttcttgaaagttcaatgtttttggcatcttgtgtaaatgatgtcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="73871" stop="72452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73571" g_stop="72752" g_length="820"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="819" r_length="819" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E740148" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73571" e_stop="72752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCTCTTTTTAATGATATTTTTTCCTTGTATGTAATTTCTGTTGTAGTTTTTCATGTATCTTTATTTTTTCCCTCATTTTTCTGTAGTTTGTTTGCTCTTTTGTTGTTGATATACTGTAAAGATAATGTCTTAGGATGTAAATGTAAATAGATTTTTCGCGTTGTAAACAGTATAGGCTCCTGCGATTGTAAATGAGAGTTGGAGAACTGTTTTTTCTTCTTGATAGTTCAATGTTTTTGGCATCTTGTGTAAATGATGTCATTG</genome_strand>
        <mrna_strand>AACCTCAA-TCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCTCTTTTTAATGATATTTTTTCCTTGTATGTAATTTCTGTTGTAGTTTTTCATGTATCTTTATTTTTTCCCTCATTTTTCTGTAGTTTGTTTGCTCTTTTGTTGTTGATATACTGTAAAGATAATGTCTTAGGATGTAAATGTAAATAGATTTTTCGCGTTGTAAACAATATAGGCTCCTGCGATTGTAAATGAGAGTTGGAGAACTGTTTTTTCTTCTTGAAAGTTCAATGTTTTTGGCATCTTGTGTAAATGATGTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E252726" ref_strand="+" ref_description="SGN-E252726 [cLEG-16-O4]">
      <seq>tttgactgaaatggactctgaatttgctgcgttttcaccaatttcactcccttttgctgacccatcttctccttttatcaattttggatcttttgccactcctttgagccaacatccagttggagaaggggaaggagaaggagaagggggagaaattgaacagccagctgagggaggattgggtgtgccgcagcctatggagtgtttacatgggatacaaattccgccatttttgtcaaagacttttgatttggttgaggaccctttattggatacgattatttcttggggtagaaatggagaaagctttgtagtttgggatccagtggagttttcaagattggttcttcctaggaatttcaagcacagtaatttctccagctttgttcgacagcttaatacatatgtgggtattaattttagcacactggccaactttttctggctaatgtgttaaatctctagttctctaactctgtctctctttttaatgatattttttccttgtatgtaatttctgttgtagtttttcatgtatctttattttttccctcatttttctgtagtttgtttgctcttttgttgttgatatactgtaaagataatgtcttacgatgtaaatgtaaatagatttttcgcgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="73795" stop="72552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73495" g_stop="72852" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E252726" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73495" e_stop="72852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCTCTTTTTAATGATATTTTTTCCTTGTATGTAATTTCTGTTGTAGTTTTTCATGTATCTTTATTTTTTCCCTCATTTTTCTGTAGTTTGTTTGCTCTTTTGTTGTTGATATACTGTAAAGATAATGTCTTAGGATGTAAATGTAAATAGATTTTTCGCGTTGT</genome_strand>
        <mrna_strand>TTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCTCTTTTTAATGATATTTTTTCCTTGTATGTAATTTCTGTTGTAGTTTTTCATGTATCTTTATTTTTTCCCTCATTTTTCTGTAGTTTGTTTGCTCTTTTGTTGTTGATATACTGTAAAGATAATGTCTTACGATGTAAATGTAAATAGATTTTTCGCGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E201223" ref_strand="+" ref_description="SGN-E201223 [cLEC-10-A18]">
      <seq>tgataaaaaacaagaatctgatacatacaaaaaccccatttttgactgaaatggactctgaatttgctgcgttttcaccaatttcactcccttttgctgacccatcttctccttttatcaattttggatcttttgccactcctttgagccaacatccagttggagaaggggaaggagaaggagaagggggagaaattgatcatccacctgatggaggattgggtgtgccgcagcctatggagtgtttacatgggatacaaattccgccatttttgtcaaagacttttgatttggttgaggaccctttattggatacgattatttcttggggtagaaatggagaaagctttgtagtttgggatccagtggagctttcaagattggttcttcctaggaatttcaagcacagtaatttctccagctttgttcgacagcttaatacatatgtgggtattaattttagcacactggccaactttttctggctaatgtgttaaatctctagttctctaactctgtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="73837" stop="72713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73537" g_stop="73013" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E201223" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73537" e_stop="73013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCT</genome_strand>
        <mrna_strand>TGATAAAAAACAAGAATCTGATAC--ATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGATCATCCACCTGATGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGCTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E207379" ref_strand="+" ref_description="SGN-E207379 [cLEC-36-E8]">
      <seq>agagttgtttacaggagatatttcttggtttgtatgtcggcgttacctatataaacctcccttcaaccccttttaccgactttttatctatcacccttatcgaaattttgaatcttttgatcacaaaaactattaaagtttcaatctttgatccataaaaaccacaaatctctttgtatgatatgaacccatttgataaaaaacaagaatctgatactgatacaaaaaccccatttttgactgaaatggactctgaatttgctgcgttttcaccaatttcactcccttttgctgacccatcttctccttttatcaattttggatcttttgccactcctttgagccaacatccagttggagaaggggaaggagaaggagaagggggagaaattgaacagccagctgagggaggattgggtgtgccgcagcctatggagtgtttacatgggatacaaattgcgccatttttgtcaaagactttagatttggttgaggaccctttattggatacgactatttcttggggtagaaatggagaaagctttgtagtttgggatccagtggagttttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="74030" stop="72857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73730" g_stop="73157" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E207379" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73730" e_stop="73157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAG</genome_strand>
        <mrna_strand>AGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTGCGCCATTTTTGTCAAAGACTTTAGATTTGGTTGAGGACCCTTTATTGGATACGACTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E212690" ref_strand="+" ref_description="SGN-E212690 [cLEC-73-I14]">
      <seq>agagttgtttacaggagatatttcttggtttgtatgtcggcgttacctatataaacctcccttcaaccccttttaccgactttttatctatcacccttatcgaaattttgaatcttttgatcacaaaaactattaaagtttcaatctttgatccataaaaaccacaaatctctttgtatgatatgaacccatttgataaaaaacaagaatctgatactgatacaaaaaccccatttttgactgaaatggactctgaatttgctgcgttttcaccaatttcactcccttttgctgacccatcttctccttttatcaattttggatcttttgccactcctttgagccaacatccagttggagaaggggaaggagaaggagaagggggagaaattgaacagccagctgagggaggattgggtgtgccgcagcctatggagtgtttacatgggatacaaattccgccatttttgtcaaagacttttgatttggttganggacctttattggatacgattatttcttggggtagaaatggagaaagctttgtagtttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="74030" stop="72874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73730" g_stop="73174" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E212690" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73730" e_stop="73174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGAT</genome_strand>
        <mrna_strand>AGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGANGGACCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E729398" ref_strand="+" ref_description="SGN-E729398 [LA20DG08]">
      <seq>taaaatggagcttcaggagaaaaactccaccgactttacagagttgtttacaggagatatttcttggtttgtatgtcggcgttacctatataaacctcccttcaaccccttttaccgactttttatctatcacccttatcgaaattttgaatcttttgatcacaaaaactattaaagtttcaatctttgatccaaaaaaaccacaaatctctttgtatgatatgaacccatttgataaaaaacaagaatctgatactgatacaaaaaccccatttttgactgaaatggactctgaatttgctgcgttttcaccaatttcactcccttttgctgacccatcttctccttttatcaattttggatcttttgccactcctttgagccaacatccagttggagaaggggaaggagaaggagaagggggagaaattgaacagccagctgagggaggattgggtgtgccgcagcctatggagtgtttacatgggatacaaattccgccatttttgtcaaagacttttgatttggttgaggaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="74069" stop="72931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73769" g_stop="73231" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E729398" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73769" e_stop="73231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGAGCTTCAGGAGAAAAACTCCACCGACTTTACAGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCT</genome_strand>
        <mrna_strand>TAAAATGGAGCTTCAGGAGAAAAACTCCACCGACTTTACAGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCAAAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E207378" ref_strand="+" ref_description="SGN-E207378 [cLEC-36-E6]">
      <seq>agagttgtttacaggagatatttcttggtttgtatgtcggcgttacctatataaacctcccttcaaccccttttaccgactttttatctatcacccttatcgaaattttgaatcttttgatcacaaaaactattaaagtttcaatctttgatccataaaaaccacaaatctctttgtatgatatgaacccatttgataaaaaacaagaatctgatactgatacaaaaaccccatttttgactgaaatggactctgaatttgctgcgttttcaccaatttcactcccttttgctgacccatcttctccttttatcaattttggatcttttgccactcctttgagccaacatccagttggagaaggggaaggagaaggagaagggggagaaattgaacagccagctgagggaggattgggtgtgccgcagcctatggagtgtttacatgggatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="74030" stop="72976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73730" g_stop="73276" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E207378" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73730" e_stop="73276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAA</genome_strand>
        <mrna_strand>AGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E717627" ref_strand="+" ref_description="SGN-E717627 [FC02BB03]">
      <seq>gggcgattggcggcaaatcggccgaattgatatatataggagctacacttttacccaaatcaatcaaaaaccctatctcctattccaatttacagctgaaaatccccaattgaagctcacaatttcagttctgtatatatataacgatcagatttagtctctttgattcgagttgttcttgaaatttacatgaaattagtaataagcagtgattttgttgtttgttttgattttgcgttttttttaatagcaattttggatgtaaccgatgtaaaatagtttgaatttagggttagttttttcttttattatttgatgattgtttggataaagtgatggaaatggagggttctcgtagaccatttgatagatcaagattggagccaggacctaagaaaccaagattagtcgaagccccaattggaactgagcgaggttctaatgggagaagctttattcctcaacggggagctgggaattcgaggattcgagctagtgataaagggggagactcggaaaacagtgattcgattcgcgggtcttttcaacagcagacgcagcatcaggagctagtgagtcaatataagacggctttagctgaactaacatttaattcaaagccgataattacaaacttgactattattgctggtgagaatttgcaagcggccaaggcaattgctgctactatctgcaacaacattattgaggtgatattccggttttaaatgctactgtgtcaatgttgttgattttgtttaatttagtgtgttttattacttggttgtacagaagtgaaatctgataaagaaggcaaagttagatttatgatattttagattagtgcagctggtgtaatgagtgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="79703" stop="81141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80003" g_stop="80841" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="868" r_length="839" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E717627" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80003" e_stop="80841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATAGGAGCTACACTTTTACCCAAATCAATCAAAAACCCTATCTCCTATTCCAATTTACAGCTGAAAATCCCCAATTGAAGCTCACAATTTCAGTTCTGTATATATATAACGATCAGATTTAGTCTCTTTGATTCGAGTTGTTCTTGAAATTTACATGAAATTAGTAATAAGCAGTGATTTTGTTGTTTGTTTTGATTTTGCGTTTTTTTTAATAGCAATTTTGGATGTAACCGATGTAAAATAGTTTGAATTTAGGGTTAGTTTTTTCTTTTATTATTTGATGATTGTTTGGATAAAGTGATGGAAATGGAGGGTTCTCGTAGACCATTTGATAGATCAAGATTGGAGCCAGGACCTAAGAAACCAAGATTAGTCGAAGCCCCAATTGGAACTGAGCGAGGTTCTAATGGGAGAAGCTTTATTCCTCAACGGGGAGCTGGGAATTCGAGGATTCGAGCTAGTGATAAAGGGGGAGACTCGGAAAACAGTGATTCGATTCGCGGGTCTTTTCAACAGCAGACGCAGCATCAGGAGCTAGTGAGTCAATATAAGACGGCTTTAGCTGAACTAACATTTAATTCAAAGCCGATAATTACAAACTTGACTATTATTGCTGGTGAGAATTTGCAAGCGGCCAAGGCAATTGCTGCTACTATCTGCAACAACATTATTGAGGTGATATTCCGGTTTTAAATGCTACTGTGTCAATGTTGTTGATTTTGTTTAATTTAGTGTGTTTTATTACTTGGTTGTACAGAAGTGAAATCTGATAAAGAAGGCAAAGTTAGATTTATGATATTTTAGATTAGTGCAGCTGGTGTAATGAGTGTTGT</genome_strand>
        <mrna_strand>ATATATATAGGAGCTACACTTTTACCCAAATCAATCAAAAACCCTATCTCCTATTCCAATTTACAGCTGAAAATCCCCAATTGAAGCTCACAATTTCAGTTCTGTATATATATAACGATCAGATTTAGTCTCTTTGATTCGAGTTGTTCTTGAAATTTACATGAAATTAGTAATAAGCAGTGATTTTGTTGTTTGTTTTGATTTTGCGTTTTTTTTAATAGCAATTTTGGATGTAACCGATGTAAAATAGTTTGAATTTAGGGTTAGTTTTTTCTTTTATTATTTGATGATTGTTTGGATAAAGTGATGGAAATGGAGGGTTCTCGTAGACCATTTGATAGATCAAGATTGGAGCCAGGACCTAAGAAACCAAGATTAGTCGAAGCCCCAATTGGAACTGAGCGAGGTTCTAATGGGAGAAGCTTTATTCCTCAACGGGGAGCTGGGAATTCGAGGATTCGAGCTAGTGATAAAGGGGGAGACTCGGAAAACAGTGATTCGATTCGCGGGTCTTTTCAACAGCAGACGCAGCATCAGGAGCTAGTGAGTCAATATAAGACGGCTTTAGCTGAACTAACATTTAATTCAAAGCCGATAATTACAAACTTGACTATTATTGCTGGTGAGAATTTGCAAGCGGCCAAGGCAATTGCTGCTACTATCTGCAACAACATTATTGAGGTGATATTCCGGTTTTAAATGCTACTGTGTCAATGTTGTTGATTTTGTTTAATTTAGTGTGTTTTATTACTTGGTTGTACAGAAGTGAAATCTGATAAAGAAGGCAAAGTTAGATTTATGATATTTTAGATTAGTGCAGCTGGTGTAATGAGTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E203123" ref_strand="+" ref_description="SGN-E203123 [cLEB-3-P13]">
      <seq>gcacgagggaacgcaaaatattgggccgatgaatgcaactctggaatccaggggatccatagtgcaacagggagagactctcagagctgcctctccctctgctcagtcaccaatgcatcaccttcctccatccccatcacttataacaagcaacagtaatcaagtaattaacagtcccgctgagcagtaccagatgcaaaccagttctcgttctgatccaagactatcccaaatctcaaggaggtcaaatctagatcctcgtaaccagtatgcccaggaatctctgacaatgccatctcggaataccatttcagttaattcacaaagacaacaccctccaagtttgcagaattcgtctgccttgtcttcttctcatcaagtgagacagaaaggttcaccggaaaagcctgtaatctgaatattctgtacaaaccaagaattcaacagttcctgagatttcaggttttcctgatccctctagcactagcagtttgttggctgctgttttgaagagtggagtcattggtaataaatcgagttctggtactacgtcaagttctcttgataagggtgctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="85179" stop="86354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85478" g_stop="86054" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E203123" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85478" e_stop="86054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTTGGAACGCAAAATATTGGGCCGATGAATGCAACTCTGGAATCCAGGGGATCCATAGTGCAACAGGGAGAGACTCTCAGAGCTGCCTCTCCCTCTGCTCAGTCACCAATGCATCACCTTCCTCCATCCCCATCACTTATAACAAGCAACAGTAATCAAGTAATTAACAGTCCCGCTGAGCAGTACCAGATGCAAACCAGTTCTCGTTCTGATCCAAGACTATCCCAAATCTCAAGGAGGTCAAATCTAGATCCTCGTAACCAGTATGCCCAGGAATCTCTGACAATGCCATCTCGGAATACCATTTCAGTTAATTCACAAAGACAACACCCTCCAAGTTTGCAGAATTCGTCTGCCTTGTCTTCTTCTCATCAGTTGAGACAG-AAGGTTCAGCGGGAAAGCCTGGAATCTGAATATTCTGTACAAACCAAGAATTCAACAGTTCCTGAGATTTCAGGTTTTCCTGATCCCTCTAGCACTAGCAGTTTGTTGGCTGCTGTTTTGAAGAGTGGAGTCATTGGTAATAAATCGAGTTCTGGTACTACGTCAAGTTCTCTTGATAAGGGTGCTCTC</genome_strand>
        <mrna_strand>GCACGAGGGAACGCAAAATATTGGGCCGATGAATGCAACTCTGGAATCCAGGGGATCCATAGTGCAACAGGGAGAGACTCTCAGAGCTGCCTCTCCCTCTGCTCAGTCACCAATGCATCACCTTCCTCCATCCCCATCACTTATAACAAGCAACAGTAATCAAGTAATTAACAGTCCCGCTGAGCAGTACCAGATGCAAACCAGTTCTCGTTCTGATCCAAGACTATCCCAAATCTCAAGGAGGTCAAATCTAGATCCTCGTAACCAGTATGCCCAGGAATCTCTGACAATGCCATCTCGGAATACCATTTCAGTTAATTCACAAAGACAACACCCTCCAAGTTTGCAGAATTCGTCTGCCTTGTCTTCTTCTCATCAAGTGAGACAGAAAGGTTCACCGGAAAAGCCTGTAATCTGAATATTCTGTACAAACCAAGAATTCAACAGTTCCTGAGATTTCAGGTTTTCCTGATCCCTCTAGCACTAGCAGTTTGTTGGCTGCTGTTTTGAAGAGTGGAGTCATTGGTAATAAATCGAGTTCTGGTACTACGTCAAGTTCTCTTGATAAGGGTGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E203430" ref_strand="+" ref_description="SGN-E203430 [cLEB-3-P12]">
      <seq>gcacgagggaacgcaaaatattgggccgatgaatgcaactctggaatccaggggatccatagtgcaacagggagagactctcagagctgcctctccctctgctcagtcaccaatgcatcaccttcctccatccccatcacttataacaagcaacagtaatcaagtaattaacagtcccgctgagcagtaccagatgcaaaccagttctcgttctgatccaagactatcccaaatctcaaggaggtcaaatctagatcctcgtaaccagtatgcccaggaatctctgacaatgccatctcggaataccatttcagttaattcacaaagacaacaccctccaagtttgcagaattcgtctgccttgtcttcttctcatcagttgagacagaaggttcagcgggaaagcctggaatctgaatattctgtacaaaccaagaattcaacagttcctgagatttcaggttttcctgatccctctagcactagcagtttgttggctgctgttttgaagagtggagtcattgggaataaatcgagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="85179" stop="86318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85478" g_stop="86018" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E203430" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85478" e_stop="86018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTTGGAACGCAAAATATTGGGCCGATGAATGCAACTCTGGAATCCAGGGGATCCATAGTGCAACAGGGAGAGACTCTCAGAGCTGCCTCTCCCTCTGCTCAGTCACCAATGCATCACCTTCCTCCATCCCCATCACTTATAACAAGCAACAGTAATCAAGTAATTAACAGTCCCGCTGAGCAGTACCAGATGCAAACCAGTTCTCGTTCTGATCCAAGACTATCCCAAATCTCAAGGAGGTCAAATCTAGATCCTCGTAACCAGTATGCCCAGGAATCTCTGACAATGCCATCTCGGAATACCATTTCAGTTAATTCACAAAGACAACACCCTCCAAGTTTGCAGAATTCGTCTGCCTTGTCTTCTTCTCATCAGTTGAGACAGAAGGTTCAGCGGGAAAGCCTGGAATCTGAATATTCTGTACAAACCAAGAATTCAACAGTTCCTGAGATTTCAGGTTTTCCTGATCCCTCTAGCACTAGCAGTTTGTTGGCTGCTGTTTTGAAGAGTGGAGTCATTGGTAATAAATCGAGTTCT</genome_strand>
        <mrna_strand>GCACGAGGGAACGCAAAATATTGGGCCGATGAATGCAACTCTGGAATCCAGGGGATCCATAGTGCAACAGGGAGAGACTCTCAGAGCTGCCTCTCCCTCTGCTCAGTCACCAATGCATCACCTTCCTCCATCCCCATCACTTATAACAAGCAACAGTAATCAAGTAATTAACAGTCCCGCTGAGCAGTACCAGATGCAAACCAGTTCTCGTTCTGATCCAAGACTATCCCAAATCTCAAGGAGGTCAAATCTAGATCCTCGTAACCAGTATGCCCAGGAATCTCTGACAATGCCATCTCGGAATACCATTTCAGTTAATTCACAAAGACAACACCCTCCAAGTTTGCAGAATTCGTCTGCCTTGTCTTCTTCTCATCAGTTGAGACAGAAGGTTCAGCGGGAAAGCCTGGAATCTGAATATTCTGTACAAACCAAGAATTCAACAGTTCCTGAGATTTCAGGTTTTCCTGATCCCTCTAGCACTAGCAGTTTGTTGGCTGCTGTTTTGAAGAGTGGAGTCATTGGGAATAAATCGAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E277183" ref_strand="+" ref_description="SGN-E277183 [cLEL-3-H24]">
      <seq>gcacgagggaacgcaaaatattgggccgatgaatgcaactctggaatccaggggatccatagtgcaacagggagacatcttcagagctgcctctccctctgctcagtcaccaatgcatcaccttcctccatccccatcacttataacaagcaacagtaatcaagtaattaacagtcccgctgagcagtaccagatgcaaaccagttctcgttctgatccaagactatcccaaatctcaaggaggtcaaatctagatcctcgtaaccagtatgcccaggaatctctgacaatgccatctcggaataccatttcagttaattcacaaagacaacaccctccaagtttgcagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="85179" stop="86129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85478" g_stop="85829" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E277183" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85478" e_stop="85829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTTGGAACGCAAAATATTGGGCCGATGAATGCAACTCTGGAATCCAGGGGATCCATAGTGCAACAGGGAGAGACTCTCAGAGCTGCCTCTCCCTCTGCTCAGTCACCAATGCATCACCTTCCTCCATCCCCATCACTTATAACAAGCAACAGTAATCAAGTAATTAACAGTCCCGCTGAGCAGTACCAGATGCAAACCAGTTCTCGTTCTGATCCAAGACTATCCCAAATCTCAAGGAGGTCAAATCTAGATCCTCGTAACCAGTATGCCCAGGAATCTCTGACAATGCCATCTCGGAATACCATTTCAGTTAATTCACAAAGACAACACCCTCCAAGTTTGCAGAAT</genome_strand>
        <mrna_strand>GCACGAGGGAACGCAAAATATTGGGCCGATGAATGCAACTCTGGAATCCAGGGGATCCATAGTGCAACAGGGAGACATCTTCAGAGCTGCCTCTCCCTCTGCTCAGTCACCAATGCATCACCTTCCTCCATCCCCATCACTTATAACAAGCAACAGTAATCAAGTAATTAACAGTCCCGCTGAGCAGTACCAGATGCAAACCAGTTCTCGTTCTGATCCAAGACTATCCCAAATCTCAAGGAGGTCAAATCTAGATCCTCGTAACCAGTATGCCCAGGAATCTCTGACAATGCCATCTCGGAATACCATTTCAGTTAATTCACAAAGACAACACCCTCCAAGTTTGCAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E244943" ref_strand="+" ref_description="SGN-E244943 [cLEF-2-O21]">
      <seq>tctgtcactagtctatcaatggacagaaatgcttcgaactctccaaattattcccagagaaatgtagaacagccaccattgccacctggtctgcctccaactcttgcaggtactgcatcatcgcagacgccgaatgcaccaaatattgcttccagtcctctttcaagtattttgagtacattggtggcgaaggggttaatatccgcatcaaagaaggaccctcctatttatactccttcagatacacctcctcaaactcagaaccttattccacctgcaagttccatttcaactcctgctttatctgctccaacatcttcatctgttccttcttcagctcataaggatgaactttcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="85824" stop="86783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86124" g_stop="86483" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E244943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86124" e_stop="86483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCACTAGTCTATCAATGGACAGAAATGCTTCGAACTCTCCAAATTATTCCCAGAGAAATGTAGAACAGCCACCATTGCCACCTGGTCTGCCTCCAACTCTTGCAGGTACTGCATCATCGCAGACGCCGAATGCACCAAATATTGCTTCCAGTCCTCTTTCAAGTATTTTGAGTACATTGGTGGCGAAGGGGTTAATATCCGCATCAAAGAAGGACCCTCCTATTTATACTCCTTCAGATACACCTCCTCAAACTCAGAACCTTATTCCACCTGCAAGTTCCATTTCAACTCCTGCTTTATCTGCTCCAACATCTTCATCTGTTCCTTCTTCAGCTCATAAGGATGAACTTTCACAC</genome_strand>
        <mrna_strand>TCTGTCACTAGTCTATCAATGGACAGAAATGCTTCGAACTCTCCAAATTATTCCCAGAGAAATGTAGAACAGCCACCATTGCCACCTGGTCTGCCTCCAACTCTTGCAGGTACTGCATCATCGCAGACGCCGAATGCACCAAATATTGCTTCCAGTCCTCTTTCAAGTATTTTGAGTACATTGGTGGCGAAGGGGTTAATATCCGCATCAAAGAAGGACCCTCCTATTTATACTCCTTCAGATACACCTCCTCAAACTCAGAACCTTATTCCACCTGCAAGTTCCATTTCAACTCCTGCTTTATCTGCTCCAACATCTTCATCTGTTCCTTCTTCAGCTCATAAGGATGAACTTTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E203431" ref_strand="-" ref_description="SGN-E203431 [cLEB-3-P12]">
      <seq>ctgttgaataattcaagaaagtggtatttaaattctggggaatggattgctgcatttggtggcctcccttgtggcgataaatctgaagggccagctggaggttctagtgagacatcagaatgtactgagaccatggttcctgcagatgaatgtcaatgtgtgtgtgttttgtgtggtgagttttttgaagacttctacaatgaagaaagtgatgaatggatgttcaaagatgctgtttacatgagtattccaagtgaaagtgattgtcagggtccgatagtccacaagaactgtatttcagaaagttcttgtcaagagttggggtttgcctaggatataaaactggtgttggatgcttgatttttgtctcttaatcgaagacaaccaggttcattttgaattacttgtaatgattatacatcttcttgcttagtaagcctcttccatgcttttgtttgaaacgacaatgaaatggaaattctagatactagaacagtttgcgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="86421" stop="88164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86721" g_stop="87065" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87066" i_stop="87705" i_length="640">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87706" g_stop="87868" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="508" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E203431" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203431" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86721" e_stop="87065"/>
          <exon e_start="87706" e_stop="87868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGAATAATTCAAGAAAGTGGTATTTAAATTCTGGGGAATGGATTGCTGCATTTGGTGGCCTCCCTTGTGGCGATAAATCTGAAGGGCCAGCTGGAGGTTCTAGTGAGACATCAGAATGTACTGAGACCATGGTTCCTGCAGATGAATGTCAATGTGTGTGTGTTTTGTGTGGTGAGTTTTTTGAAGACTTCTACAATGAAGAAAGTGATGAATGGATGTTCAAAGATGCTGTTTACATGAGTATTCCAAGTGAAAGTGATTGTCAGGGTCCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGGTTTGCCTAGGATATAAAACTGGTAAGTGATATGATGTTAAAGTTGATTTTAGATATTTTAAATACTTCACTAGATACTAATAATTATGAAAGAAGCCTTTTCATGTGGTTTGCTGGTAAATGGGTGGGATCTGTTTTTCATAGATAAGAATCTGCCATCGATTCTTAATGGAAAAACAAATATGTGGTACTTTTCATTGAAATTTTTCCCCAAATAAACTGAACACAAGTTACTTGTCGGCACCTTGAGTAAATTATGGATCTAATTGTCTGACAGCCCCATTTTGGAGTGCGTTGCTCTTAAGAATTAAATGCTTTTCAGAAGAGAGCACTTCCTAAAGTTCTTAAATTCTCGAAGTGCTTTGAATTCAAATTGGTTTTGTGCTGGCAATAAAATGGTTAGACAAGTTATGCTGCCCGTCAGAATTGTTAGTTGAAACTTTTGGACTGGCAATAAAATGGAGGAAGCTTAACTTTTGAAATACAATTTATGGATGCATTATTCTTTTTGATCTTCTTTTGGACTTGTGTACGTGCTTTTAATCTTGCCATCCTTCGTAGTTTGTAATTTGGTATTTATTCGTTCCTTGCAGTTCCTTTATTTCATTAGTAGCCACTGCTGACTTGTATTGTATCATATTGTCCATGGTTTCATTTCTCAGGTGTTGGATGCTTGATTTTTGTCTCTTAATCGAAGACAACCAGGTTCATTTTGAATTACTTGTAATGATTATACATCTTCTTGCTTAGTAAGCCTCTTCCATGCTTTTGTTTGAAACGACAATGAAATGGAAATTCTAGATACTAGAACAGTTTGCGCATCAT</genome_strand>
        <mrna_strand>CTGTTGAATAATTCAAGAAAGTGGTATTTAAATTCTGGGGAATGGATTGCTGCATTTGGTGGCCTCCCTTGTGGCGATAAATCTGAAGGGCCAGCTGGAGGTTCTAGTGAGACATCAGAATGTACTGAGACCATGGTTCCTGCAGATGAATGTCAATGTGTGTGTGTTTTGTGTGGTGAGTTTTTTGAAGACTTCTACAATGAAGAAAGTGATGAATGGATGTTCAAAGATGCTGTTTACATGAGTATTCCAAGTGAAAGTGATTGTCAGGGTCCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGGTTTGCCTAGGATATAAAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGATGCTTGATTTTTGTCTCTTAATCGAAGACAACCAGGTTCATTTTGAATTACTTGTAATGATTATACATCTTCTTGCTTAGTAAGCCTCTTCCATGCTTTTGTTTGAAACGACAATGAAATGGAAATTCTAGATACTAGAACAGTTTGCGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E203124" ref_strand="-" ref_description="SGN-E203124 [cLEB-3-P13]">
      <seq>taattcaagaaagtggtatttaaattctggggaatggattgctgcatttggtggcctcccttgtggcgataaatctgaagggccagctggaggttctagtgagacatcagaatgtactgagaccatggttcctgcagatgaatgtcaatgtgtgtgtgttttgtgtggtgagttttttgaagacttctacaatgaagaaagtgatgaatggatgttcaaagatgctgtttacatgagtattccaagtgaaagtgattgtcagggtccgatagtccacaagaactgtatttcagaaagttcttgtcaagagttggggtttgcctaggatataaaactggtgttggatgcttgatttttgtctcttaatcgaagacaaccaggttcattttgaattacttgtaatgattatacatcttcttgcttagtaagcctcttccatgcttttgtttgaaacgacaatgaaatggaaattctagatactagaacagtttgcgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="86429" stop="88169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86729" g_stop="87065" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87066" i_stop="87705" i_length="640">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87706" g_stop="87855" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="487" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="496" polyA_stop="512"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E203124" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203124" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86729" e_stop="87065"/>
          <exon e_start="87706" e_stop="87855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCAAGAAAGTGGTATTTAAATTCTGGGGAATGGATTGCTGCATTTGGTGGCCTCCCTTGTGGCGATAAATCTGAAGGGCCAGCTGGAGGTTCTAGTGAGACATCAGAATGTACTGAGACCATGGTTCCTGCAGATGAATGTCAATGTGTGTGTGTTTTGTGTGGTGAGTTTTTTGAAGACTTCTACAATGAAGAAAGTGATGAATGGATGTTCAAAGATGCTGTTTACATGAGTATTCCAAGTGAAAGTGATTGTCAGGGTCCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGGTTTGCCTAGGATATAAAACTGGTAAGTGATATGATGTTAAAGTTGATTTTAGATATTTTAAATACTTCACTAGATACTAATAATTATGAAAGAAGCCTTTTCATGTGGTTTGCTGGTAAATGGGTGGGATCTGTTTTTCATAGATAAGAATCTGCCATCGATTCTTAATGGAAAAACAAATATGTGGTACTTTTCATTGAAATTTTTCCCCAAATAAACTGAACACAAGTTACTTGTCGGCACCTTGAGTAAATTATGGATCTAATTGTCTGACAGCCCCATTTTGGAGTGCGTTGCTCTTAAGAATTAAATGCTTTTCAGAAGAGAGCACTTCCTAAAGTTCTTAAATTCTCGAAGTGCTTTGAATTCAAATTGGTTTTGTGCTGGCAATAAAATGGTTAGACAAGTTATGCTGCCCGTCAGAATTGTTAGTTGAAACTTTTGGACTGGCAATAAAATGGAGGAAGCTTAACTTTTGAAATACAATTTATGGATGCATTATTCTTTTTGATCTTCTTTTGGACTTGTGTACGTGCTTTTAATCTTGCCATCCTTCGTAGTTTGTAATTTGGTATTTATTCGTTCCTTGCAGTTCCTTTATTTCATTAGTAGCCACTGCTGACTTGTATTGTATCATATTGTCCATGGTTTCATTTCTCAGGTGTTGGATGCTTGATTTTTGTCTCTTAATCGAAGACAACCAGGTTCATTTTGAATTACTTGTAATGATTATACATCTTCTTGCTTAGTAAGCCTCTTCCATGCTTTTGTTTGAAACGACAATGAAATGGAAATTCTAGATACTAGAACA</genome_strand>
        <mrna_strand>TAATTCAAGAAAGTGGTATTTAAATTCTGGGGAATGGATTGCTGCATTTGGTGGCCTCCCTTGTGGCGATAAATCTGAAGGGCCAGCTGGAGGTTCTAGTGAGACATCAGAATGTACTGAGACCATGGTTCCTGCAGATGAATGTCAATGTGTGTGTGTTTTGTGTGGTGAGTTTTTTGAAGACTTCTACAATGAAGAAAGTGATGAATGGATGTTCAAAGATGCTGTTTACATGAGTATTCCAAGTGAAAGTGATTGTCAGGGTCCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGGTTTGCCTAGGATATAAAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGATGCTTGATTTTTGTCTCTTAATCGAAGACAACCAGGTTCATTTTGAATTACTTGTAATGATTATACATCTTCTTGCTTAGTAAGCCTCTTCCATGCTTTTGTTTGAAACGACAATGAAATGGAAATTCTAGATACTAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E277297" ref_strand="-" ref_description="SGN-E277297 [cLEL-3-H24]">
      <seq>gaagacttctacaatgaagaaagtgatgaatggatgttcaaagatgctgtttacatgagtattccaagtgaaagtgattgtcagggtccgatagtccacaagaactgtatttcagaaagttcttgtcaagagttggggtttgcctaggatataaaactggtgttggatgcttgatttttgtctcttaatcgaagacaaccaggttcattttgaattacttgtaatgattatacatcttcttgcttagtaagcctcttccatgcttttgtttgaatcagcaatgaaatggaaattcagattcttcgcacagtttgcgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="86607" stop="88149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86907" g_stop="87065" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87066" i_stop="87705" i_length="640">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87706" g_stop="87855" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="309" r_length="150" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="334"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E277297" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277297" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86907" e_stop="87065"/>
          <exon e_start="87706" e_stop="87855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTTCTACAATGAAGAAAGTGATGAATGGATGTTCAAAGATGCTGTTTACATGAGTATTCCAAGTGAAAGTGATTGTCAGGGTCCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGGTTTGCCTAGGATATAAAACTGGTAAGTGATATGATGTTAAAGTTGATTTTAGATATTTTAAATACTTCACTAGATACTAATAATTATGAAAGAAGCCTTTTCATGTGGTTTGCTGGTAAATGGGTGGGATCTGTTTTTCATAGATAAGAATCTGCCATCGATTCTTAATGGAAAAACAAATATGTGGTACTTTTCATTGAAATTTTTCCCCAAATAAACTGAACACAAGTTACTTGTCGGCACCTTGAGTAAATTATGGATCTAATTGTCTGACAGCCCCATTTTGGAGTGCGTTGCTCTTAAGAATTAAATGCTTTTCAGAAGAGAGCACTTCCTAAAGTTCTTAAATTCTCGAAGTGCTTTGAATTCAAATTGGTTTTGTGCTGGCAATAAAATGGTTAGACAAGTTATGCTGCCCGTCAGAATTGTTAGTTGAAACTTTTGGACTGGCAATAAAATGGAGGAAGCTTAACTTTTGAAATACAATTTATGGATGCATTATTCTTTTTGATCTTCTTTTGGACTTGTGTACGTGCTTTTAATCTTGCCATCCTTCGTAGTTTGTAATTTGGTATTTATTCGTTCCTTGCAGTTCCTTTATTTCATTAGTAGCCACTGCTGACTTGTATTGTATCATATTGTCCATGGTTTCATTTCTCAGGTGTTGGATGCTTGATTTTTGTCTCTTAATCGAAGACAACCAGGTTCATTTTGAATTACTTGTAATGATTATACATCTTCTTGCTTAGTAAGCCTCTTCCATGCTTTTGTTTGAAACGACAATGAAATGGAAATTCTAGATAC-TAGAACA</genome_strand>
        <mrna_strand>GAAGACTTCTACAATGAAGAAAGTGATGAATGGATGTTCAAAGATGCTGTTTACATGAGTATTCCAAGTGAAAGTGATTGTCAGGGTCCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGGTTTGCCTAGGATATAAAACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGATGCTTGATTTTTGTCTCTTAATCGAAGACAACCAGGTTCATTTTGAATTACTTGTAATGATTATACATCTTCTTGCTTAGTAAGCCTCTTCCATGCTTTTGTTTGAATCAGCAATGAAATGGAAATTC-AGATTCTTCGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E241201" ref_strand="-" ref_description="SGN-E241201 [cLED-26-I5]">
      <seq>attgaacaaaaatcatccagctgcaattctgttcaagatccaacttatacttaagcaagctactgagtgtgcattcactttgttagaacattaagggcttaaaacttttactaattgtctagagcctcggcaactttgtcccttttaagttctcggacacttggactatcattgcaaccatattgttggttttagataatggatattcccagattatgatagaagttctttgtttattgggatgtaatttcattgcctgtatgtttattgcaagtccttggtttttacttctagtagaaagtaggaggttcttgaagctgtcgactgaatgttcgttcacattagttgctgctcaagctgatgagaacctttacatacacaaacatatgtggaattgttcattgtgaattttttttgtgctcaacatcacaatcctcaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="87656" stop="88693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87956" g_stop="88392" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="456"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E241201" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241201" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87956" e_stop="88392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAACAAAAATCATCCAGCTGCAATTCTGTTCAAGATCCAACTTATACTTAAGCAAGCTACTGAGTGTGCATTCACTTTGTTAGAACATTAAGGGCTTAAAACTTTTACTAATTGTCTAGAGCCTCGGCAACTTTGTCCCTTTTAAGTTCTCGGACACTTGGACTATCATTGCAACCATATTGTTGGTTTTAGATAATGGATATTCCCAGATTATGATAGAAGTTCTTTGTTTATTGGGATGTAATTTCATTGCCTGTATGTTTATTGCAAGTCCTTGGTTTTTACTTCTAGTAGAAAGTAGGAGGTTCTTGAAGCTGTCGACTGAATGTTCGTTCACATTAGTTGCTGCTCAAGCTGATGAGAACCTTTACATACACAAACATCTGTGGAATTGTTCATTGTGAATTTTTTTTGTGCTCAACATCACAATCCTC</genome_strand>
        <mrna_strand>ATTGAACAAAAATCATCCAGCTGCAATTCTGTTCAAGATCCAACTTATACTTAAGCAAGCTACTGAGTGTGCATTCACTTTGTTAGAACATTAAGGGCTTAAAACTTTTACTAATTGTCTAGAGCCTCGGCAACTTTGTCCCTTTTAAGTTCTCGGACACTTGGACTATCATTGCAACCATATTGTTGGTTTTAGATAATGGATATTCCCAGATTATGATAGAAGTTCTTTGTTTATTGGGATGTAATTTCATTGCCTGTATGTTTATTGCAAGTCCTTGGTTTTTACTTCTAGTAGAAAGTAGGAGGTTCTTGAAGCTGTCGACTGAATGTTCGTTCACATTAGTTGCTGCTCAAGCTGATGAGAACCTTTACATACACAAACATATGTGGAATTGTTCATTGTGAATTTTTTTTGTGCTCAACATCACAATCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E377742" ref_strand="+" ref_description="SGN-E377742 [TUS-21-B11]">
      <seq>tttttttttaattaaacttttggctatctttataattctcacaaaacatagtactacaatcttatgatacatcgaaatacaagttttaataaattaaagtttcttttagtactttgtactataatttaaagtatagaaaagaacattactaattaaccatccttaagaaaaaaaataatattaatataaacttgttcaatgttttggcttgtgttgagtataaatataatctaaatgagcctctgcagtcattcttctcttgaaacaaatttcatctttttcttcacattcttctattcccatgagctatttcaataaaaaaaatcaattcgaagttagagtcgtatatatgaatttttaaaatcggagctcaaaaattataataagtgtattaaagaaaatacaaaaaaaaattttattactctatatatattcttagaagttatatgtaatatctagacgattcaacaatttatatatgtacaaaaaaaattatttttgccatactttttggaagaaaatatttaaattgaacccctttttatctcttaactccgaaataaatgaaaggtgatcaactgaatatttttttaaaaaaaattatatcgtatatataaaaaattacttttccataaaaaagaaaaattcaaatacgagctagctaaaatcaataggctaaaaaattactaggcctaaacacaaaaacaaattgaaattattgctttattattcatagcaaacaaaatattttgataatttatcgctaaatagaattaacaaagaattttttttactaattacaaatnctctcactagctaatttttttttgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="90265" stop="91692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90557" g_stop="91392" g_length="836"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="835" r_length="835" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E377742" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90557" e_stop="91392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAATAATTAAACTTTTGGCTATCTTTATAATTCTCACAAAACATAGTACTACAATCTTATGATACATCGAAATACAAGTTTTAATAAATTAAAGTTTCTTTTAGTACGTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTTAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCTTTATTATTCATAGCAAACAAAATATTTTGATAATTTATCGCTAAATAGAATTAACAAAGAATTTTTTTTACTAATTACAAAATCTTCTCACTAGCTAATTTTTTTTTGTTTTT</genome_strand>
        <mrna_strand>TTTTTTTTTAATTAAACTTTTGGCTATCTTTATAATTCTCACAAAACATAGTACTACAATCTTATGATACATCGAAATACAAGTTTTAATAAATTAAAGTTTCTTTTAGTACTTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTAAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCTTTATTATTCATAGCAAACAAAATATTTTGATAATTTATCGCTAAATAGAATTAACAAAGAATTTTTTTTACTAATTAC-AAATNCTCTCACTAGCTAATTTTTTTTTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E392454" ref_strand="+" ref_description="SGN-E392454 [TUS-36-A14]">
      <seq>ttttttttttattaaacttttggctatctttataattctcacaaaacatagtactacaatcttatgatacatcgaaatacaagttttaataaattaaagtttcttttagtactttgtactataatttaaagtatagaaaagaacattactaattaaccatccttaagaaaaaaaataatattaatataaacttgttcaatgttttggcttgtgttgagtataaatataatctaaatgagcctctgcagtcattcttctcttgaaacaaatttcatctttttcttcacattcttctattcccatgagctatttcaataaaaaaaatcaattcgaagttagagtcgtatatatgaatttttaaaatcggagctcaaaaattataataagtgtattaaagaaaatacaaaaaaaaattttattactctatatatattcttagaagttatatgtaatatctagacgattcggcgatttatatatgtacaaaaaaaattatttttgccatactttttggaagaaaatatttaaattgaacccctttttatctcttaactccgaaataaatgaaaggtgatcaactgaatatttttttaaaaaaaattatatcgtatatataaaaaattacttttccataaaaaagaaaaattcaaatacgagctagctaaaatcaataggctaaaaaattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="90265" stop="91545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90557" g_stop="91245" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E392454" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90557" e_stop="91245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAATAATTAAACTTTTGGCTATCTTTATAATTCTCACAAAACATAGTACTACAATCTTATGATACATCGAAATACAAGTTTTAATAAATTAAAGTTTCTTTTAGTACGTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTTAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTA</genome_strand>
        <mrna_strand>TTTTTTTTTTATTAAACTTTTGGCTATCTTTATAATTCTCACAAAACATAGTACTACAATCTTATGATACATCGAAATACAAGTTTTAATAAATTAAAGTTTCTTTTAGTACTTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCGGCGATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTAAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E368042" ref_strand="+" ref_description="SGN-E368042 [TUS-22-N17]">
      <seq>tttttttttaattaaacttttggctatctttataattctcacaaaacatagtactacaatcttatgatacatcgaaatacaagttttaataaattaaagtttcttttagtactttgtactataatttaaagtatagaaaagaacattactaattaaccatccttaagaaaaaaaataatattaatataaacttgttcaatgttttggcttgtgttgagtataaatataatctaaatgagcctctgcagtcattcttctcttgaaacaaatttcatctttttcttcacattcttctattcccatgagctatttcaataaaaaaaatcaattcgaagttagagtcgtatatatgaatttttaaaatcggagctcaaaaattataataagtgtattaaagaaaatacaaaaaaaaattttattactctatatatattcttagaagttatatgtaatatctagacgattcaacaatttatatatgtacaaaaaaaattatttttgccatactttttggaagaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="90265" stop="91380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90557" g_stop="91080" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E368042" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90557" e_stop="91080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTAATAATTAAACTTTTGGCTATCTTTATAATTCTCACAAAACATAGTACTACAATCTTATGATACATCGAAATACAAGTTTTAATAAATTAAAGTTTCTTTTAGTACGTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATAT</genome_strand>
        <mrna_strand>TTTTTTTTTAATTAAACTTTTGGCTATCTTTATAATTCTCACAAAACATAGTACTACAATCTTATGATACATCGAAATACAAGTTTTAATAAATTAAAGTTTCTTTTAGTACTTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E279598" ref_strand="+" ref_description="SGN-E279598 [cLER-5-N8]">
      <seq>aataaaaagaagaattttaagcaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatctcatgggaatagaagaatgtgaagaaaaagatgaaatttgtttcaagagaagaatgactgcagaggctcatttagattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattattttttttcttaaggatggttaattagtaatgttcttttctatactttaaattatagtacaacgtactaaaagaaactttaatttattaaaacttgtatttcgatgtatcataagattgtagtactatgttttgtgagaattataaagatagccaaaagtttaattattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92124" stop="90262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91824" g_stop="91670" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="217" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90562" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="518" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="528"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E279598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91824" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATTATTA</genome_strand>
        <mrna_strand>AATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E549931" ref_strand="+" ref_description="SGN-E549931 [TUS-5-I20]">
      <seq>ctttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaaaaatctaatgggattattagtaataatccaatttcctcacaagtacaaaaagatttcaatgatctcatgggaatagaagaatgtgaagaaaaagatgaaatttgtttcaaaaaaaaaatgactgcaaaggctcatttaaattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattattttttttcttaaggatggttaattagaaatgttcttttctatactttaaattatagtacaaagtactaaaagaaactttaatttattaaaacttgtatttcgatgtatcataagattgtagtactatgttttgtgagaattataaagatagccaaaagtttaattaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatccccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92157" stop="90265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91857" g_stop="91670" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="251" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90566" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="548" r_length="297" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="549" polyA_stop="582"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E549931" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91857" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGC-AAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATT</genome_strand>
        <mrna_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAA............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAAAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAAAAAAAAATGACTGCAAAGGCTCATTTAAATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGAAATGTTCTTTTCTATACTTTAAATTATAGTACAAAGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E389845" ref_strand="+" ref_description="SGN-E389845 [TUS-4-I18]">
      <seq>ctttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatctcatgggaatagaagaatgtgaagaaaaagatgaaatttgtttcaagagaagaatgactgcagaggctcatttagattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattattttttttcttaaggatggttaattagtaatgttcttttctatactttaaattatagtacaaagtactaaaagaaactttaatttattaaaacttgtatttcgatgtatcataagattgtagtactatgttttgtgagaattataaagatagccaaaagtttaattaananaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccttctgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92157" stop="90265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91857" g_stop="91670" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="251" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90566" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="548" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="583"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E389845" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91857" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGC-AAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATT</genome_strand>
        <mrna_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAAAGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E376884" ref_strand="+" ref_description="SGN-E376884 [TUS-19-F19]">
      <seq>tttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatctcatgggaatagaagaatgtgaagaaaaagatgaaatttgtttcaagagaagaatgactgcagaggctcatttagattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattattttttttcttaaggatggttaattagtaatgttcttttctatactttaaattatagtacaaagtactaaaagaaactttaatttattaaaacttgtatttcgatgtatcataagattgtagtactatgttttgtgagaattataaagatagccaaaagtttaattaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92156" stop="90265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91856" g_stop="91670" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="250" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90566" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="547" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="548" polyA_stop="574"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E376884" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91856" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGC-AAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATT</genome_strand>
        <mrna_strand>TTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAAAGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E377203" ref_strand="+" ref_description="SGN-E377203 [TUS-19-F18]">
      <seq>tttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatctcatgggaatagaagaatgtgaagaaaaagatgaaatttgtttcaagagaagaatgactgcagaggctcatttagattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattattttttttcttaaggatggttaattagtaatgttcttttctatactttaaattatagtacaaagtactaaaagaaactttaatttattaaaacttgtatttcgatgtatcataagattgtagtactatgttttgtgagaattataaagatagccaaaagtttaattaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92156" stop="90265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91856" g_stop="91670" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="250" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90566" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="547" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="548" polyA_stop="575"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E377203" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91856" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGC-AAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATT</genome_strand>
        <mrna_strand>TTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAAAGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E215575" ref_strand="-" ref_description="SGN-E215575 [cLEL-15-C24]">
      <seq>atttagattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattattttttttcttaaggatggttaattagtaatgttcttttctatactttaaattatagtacaaagtactaaaagaaactttaatttattaaaacttgtatttcgatgtatcataagattgtagttctatgttttgtgagaattataaagatagccaaaagtttaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91092" stop="90265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90792" g_stop="90566" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="228" polyA_stop="244"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E215575" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215575" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90792" e_stop="90566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATT</genome_strand>
        <mrna_strand>ATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAAAGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTTCTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E720049" ref_strand="+" ref_description="SGN-E720049 [FC09CG01]">
      <seq>gggcggccaaatcggccgaattgatctctcatctctctttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatctcatgggaatagaaaaatgtgaagaaaaagatgaaatttgtttcaagaaaaaaatgactgcaaaggctcatttaaattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattatttttttcttaaggatggttaattagaaatgttcttttctatactttaaattatagtacaacgtactaaaagaaactttaatttattaaaacttgtatttcgatgtatcataaaattgtagtactatgttttgtgagaattataaagatagccaaaagtttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92170" stop="90265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91870" g_stop="91670" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="223" r_length="200" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="285" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90569" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="578" r_length="293" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="582" polyA_stop="610"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E720049" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91870" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTCATCTCTCTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTA</genome_strand>
        <mrna_strand>ATCTCTCATCTCTCTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAA-AAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAAAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAAAAAAATGACTGCAAAGGCTCATTTAAATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTA-TTTTTTTCTTAAGGATGGTTAATTAGAAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAAATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E549930" ref_strand="+" ref_description="SGN-E549930 [TUS-5-I19]">
      <seq>ctttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttcccttagggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaaaaatctaatgggattattagtaataatccaatttcctcacaagtacaaaaaaatttcaatgatctcatgggaatagaaaaatgtgaaaaaaaagatgaaatttgtttcaaaaaaaaaatgactgcaaaggctcatttaaattatatttatactcaacacaagccaaaactttgaacaagtttatataaatattattttttttcttaaggatggttaattagaaatgttcttttctatactttaaattatagtacaaagtactaaaagaaactttaatttattaaaacttgtatttcgatgtatcataaaattgtagtactatgttttgtgaaaattataaagatagccaaaagtttatttannaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaatttcgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92157" stop="90265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91857" g_stop="91670" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="251" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90569" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="545" r_length="294" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="583"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E549930" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91857" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGC-AAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTA</genome_strand>
        <mrna_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCCCTTAGGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAA............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAAAAAATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAAAATGTGAAAAAAAAGATGAAATTTGTTTCAAAAAAAAAATGACTGCAAAGGCTCATTTAAATTATATTTATACTCAACACAAGCCAAAACTTTGAACAAGTTTATATAAATATTATTTTTTTTCTTAAGGATGGTTAATTAGAAATGTTCTTTTCTATACTTTAAATTATAGTACAAAGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAAATTGTAGTACTATGTTTTGTGAAAATTATAAAGATAGCCAAAAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E389847" ref_strand="+" ref_description="SGN-E389847 [TUS-4-I20]">
      <seq>ctttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatctcatgggaatagaagaatgtgaagaaaaagatgaaatttgtttcaagagaagaatgactgcagaggctcatttagattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattattttttttcttaaggatggttaattagaaatgttcttttctatactttaaattatagtacaaagtactaaaagaaactttaatttattaaaacttgtatttcgatgtatcataagattgtagtactatgttttgtgagaattataaagatagccaaaagtttntttnnnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaancccccgggggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92157" stop="90266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91857" g_stop="91670" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="251" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90569" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="545" r_length="294" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="552" polyA_stop="582"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E389847" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91857" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGC-AAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTA</genome_strand>
        <mrna_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGAAATGTTCTTTTCTATACTTTAAATTATAGTACAAAGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E230951" ref_strand="+" ref_description="SGN-E230951 [cLED-5-E3]">
      <seq>tttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatctcatgggaatagaagaatgtgaagaaaaagatgaaatttgtttcaagagaagaatgactgcagaggctcatttagattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattattttttttcttaaggatggttaattagtaatgttcttttctatactttaaattatagtacaaagtactaaaagaaactttaatttattaaaacttgtatttcgatgtatcataagattgtagtactatgttttgtgagaattataaagatagccaaaagttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92156" stop="90269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91856" g_stop="91670" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="250" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90569" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="544" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E230951" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91856" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGC-AAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTA</genome_strand>
        <mrna_strand>TTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAAAGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E389570" ref_strand="+" ref_description="SGN-E389570 [TUS-4-H11]">
      <seq>atcttatgatacatcgaaatacaagttctaataaattaaagtttcttttagtactttgtactataatttaaagtatagaaaagaacattactaattaaccatccttaagaaaaaaaataatattaatataaacttgttcaatgttttggcttgtgttgagtataaatataatctaaatgagcctctgcagtcattcttctcttgaaacaaatttcatctttttcttcacattcttctattcccatgagctatttcaataaaaaaaatcaattcgaagttagagtcgtatatatgaatttttaaaatcggagctcaaaaattataataagtgtattaaagaaaatacaaaaaaaaattttattactctatatatattcttagaagttatatgtaatatctagacgattcaacaatttatatatgtacaaaaaaaattatttttgccatactttttggaagaaaatatttaaattgaacccctttttatctcttaactccgaaataaatgaaaggtgatcaactgaatatttttttaaaaaaaattatatcgtatatataaaaaattacttttccataaaaaagataaattcaaatacgagctagctaaaatcaataagctaaaaaattactaggcctaaacacaaaaacaaattgaaattattgctgtattattcatagcaaacaaaatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="90315" stop="91608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90615" g_stop="91308" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E389570" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90615" e_stop="91308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTATGATACATCGAAATACAAGTTTTAATAAATTAAAGTTTCTTTTAGTACGTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTTAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCTTTATTATTCATAGCAAACAAAATATTTTG</genome_strand>
        <mrna_strand>ATCTTATGATACATCGAAATACAAGTTCTAATAAATTAAAGTTTCTTTTAGTACTTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTAAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGATAAATTCAAATACGAGCTAGCTAAAATCAATAAGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCTGTATTATTCATAGCAAACAAAATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E389495" ref_strand="+" ref_description="SGN-E389495 [TUS-4-D12]">
      <seq>catcgaaatacaagttctaataaattaaagattcttttagtactttgtactataatttaaagtatagaaaagaacattactaattaaccatccttaagaaaaaaaataatattaatataaacttgttcaatgttttggcttgtgttgagtataaatataatctaaatgagcctctgcagtcattcttctcttgaaacaaatttcatctttttcttcacattcttctattcccatgagctatttcaataaaaaaaatcaattcgaagttagagtcgtatatatgaatttttaaaatcggagctcaaaaattataataagtgtattaaagaaaatacaaaaaaaaattttattactctatatatattcttagaagttatatgtaatatctagacgattcaacaatttatatatgtacaaaaaaaattatttttgccatactttttggaagaaaatatttaaattgaacccctttttatctcttaactccgaaataaatgaaaggcgatcaactgaatattttttttaaaaaaattatatcgtatatataaaaaattacttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="90326" stop="91487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90626" g_stop="91187" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E389495" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90626" e_stop="91187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGAAATACAAGTTTTAATAAATTAAAGTTTCTTTTAGTACGTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTTAAAAAAATTATATCGTATATATAAAAAATTACTTTTCC</genome_strand>
        <mrna_strand>CATCGAAATACAAGTTCTAATAAATTAAAGATTCTTTTAGTACTTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGCGATCAACTGAATATTTTTTTTAAAAAAATTATATCGTATATATAAAAAATTACTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E550420" ref_strand="+" ref_description="SGN-E550420 [TUS-5-D12]">
      <seq>tcgaaatacaagtttcaataaattaaagtttcttttagtactttgtactataatttaaagtatagaaaagaacattactaattaaccatccttaagaaaaaaaataatattaatataaacttgttcaatgttttggcttgtgttgagtataaatataatctaaatgagcctctgcagtcattcttctcttgaaacaaatttcatctttttcttcacattcttctattcccatgagctatttcaataaaaaaaatcaattcgaagttagagtcgtatatatgaatttttaaaatcggagctcaaaaattataataagtgtattaaagaaaatacaaaaaaaaattttattactctatatatattcttagaagttatatgtaatatctagacgattcaacaatttatatatgtacaaaaaaaattatttttgccatactttttggaagaaaatatttaaattgaacccctttttatctcttaactccgaaataaatgaaaggtgatcaactgaatatttttttaaaaaaaattatatcgtatatataaaaaattacttttccataaaaaagaaaaattcaaatacgagctagctaaaatcaataggctaaaaaattactaggcctaaacacaaaaacaaattgaaattattgctttattattcatagcaaacaaaatattttgataatttatcgctaaatagaattaacaaagaattttttttactaattacaaaatcttctcactagctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="90328" stop="91679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90628" g_stop="91379" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E550420" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90628" e_stop="91379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAATACAAGTTTTAATAAATTAAAGTTTCTTTTAGTACGTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTTAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCTTTATTATTCATAGCAAACAAAATATTTTGATAATTTATCGCTAAATAGAATTAACAAAGAATTTTTTTTACTAATTACAAAATCTTCTCACTAGCTAATT</genome_strand>
        <mrna_strand>TCGAAATACAAGTTTCAATAAATTAAAGTTTCTTTTAGTACTTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTAAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCTTTATTATTCATAGCAAACAAAATATTTTGATAATTTATCGCTAAATAGAATTAACAAAGAATTTTTTTTACTAATTACAAAATCTTCTCACTAGCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E389987" ref_strand="+" ref_description="SGN-E389987 [TUS-4-C22]">
      <seq>ttttataaattaaagtttcttttagtactttgtactataatttaaagtatagaaaagaacattactaattaaccatccttaagaaaaaaaataatattaatataaacttgttcaatgttttggcttgtgttgagtataaatataatctaaatgagcctctgcagtcattcttctcttgaaacaaatttcatctttttcttcacattcttctattcccatgagctatttcaataaaaaaaatcaattcgaagttagagtcgtatatatgaatttttaaaatcggagctcaaaaattataataagtgtattaaagaaaatacaaaaaaaaattttattactctatatatattcttagaagttatatgtaatatctagacgattcaacaatttatatatgtacaaaaaaaattatttttgccatactttttggaagaaaatatttaaattgaacccctttttatctcttaactccgaaataaatgaaaggtgatcaactgaatatttttttaaaaaaaattatatcgtatatataaaaaattacttttccataaaaaagaaaaattcaaatacgagctagctaaaatcaataggctaaaaaattactaggcctaaacacaaaaacaaattgaaattattgctttattattcatagcaaacaaaatattttgataatttatcgctaaatagaattaacaaagaattttttttactaattacaaaatcttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="90341" stop="91669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90641" g_stop="91369" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E389987" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90641" e_stop="91369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAAATTAAAGTTTCTTTTAGTACGTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTTAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCTTTATTATTCATAGCAAACAAAATATTTTGATAATTTATCGCTAAATAGAATTAACAAAGAATTTTTTTTACTAATTACAAAATCTTCTCA</genome_strand>
        <mrna_strand>TTTTATAAATTAAAGTTTCTTTTAGTACTTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTAAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCTTTATTATTCATAGCAAACAAAATATTTTGATAATTTATCGCTAAATAGAATTAACAAAGAATTTTTTTTACTAATTACAAAATCTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E550100" ref_strand="+" ref_description="SGN-E550100 [TUS-5-C34]">
      <seq>tttcttttagtattctgtactataatttaaagtatagaaaagaacattactaattaaccatccttaagaaaaacaataatattaatataaacttgttcaatgttttggcttgtgttgagtataaatataatctaaatgagcctctgcagtcattcttctcttgaaacaaatttcatctttttcttcacattcttctattcccatgagctatttcaataaaaaaaatcaattcgaagttagagtcgtatatatgaatttttaaaatcggagctcaaaaattataataagtgtattaaagaaaatacaaaaaaaaattttattactctatatatattcttagaagttatatgtaatatctagacgattcaacaatttatatatgtacaaaaaaaattatttttgccatactttttggaagaaaatatttaaattgaacccctttttatctcttaactccgaaataaatgaaaggtgatcaactgaatatttttttaaaaaaaattatatcgtatatataaaaaattacttttccataaaaaagaaaaattcaaatacgagctagctaaaatcaataggctaaaaaattactaggcctaaacacaaaaacaaattgaaattattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="90371" stop="91579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90656" g_stop="91279" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E550100" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90656" e_stop="91279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTAGTACGTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTTAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCT</genome_strand>
        <mrna_strand>TTTCTTTTAGTATTCTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAACAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTAAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E389589" ref_strand="-" ref_description="SGN-E389589 [TUS-4-I18]">
      <seq>ctttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatctcatgggaatagaagaatgtgaagaaaaagatgaaatttgtttcaagagaagaatgactgcagaggctcatttagattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattattttttttcttaaggatggttaattattaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92157" stop="90399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91857" g_stop="91670" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="251" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90699" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="415" r_length="164" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E389589" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389589" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91857" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGC-AAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGT</genome_strand>
        <mrna_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTATTAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E389590" ref_strand="-" ref_description="SGN-E389590 [TUS-4-I20]">
      <seq>atcccccgggttgcagggattttctttatctctgtcatcctcccaaagtcaataagacgtagattttagagcaaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttagggttttggtactaatttcctacacatcatcagctcgtgtattgccatcaattaattctcaagaatgtaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtcatgggaatagaagaatgtgaagataaagatgaaatttgtttcaagagaagaatgactgcagaggctcatttagattatatttatactcaacacaagccaaaacattgaacaagtttatattaatattattctttctcttaaggatggttaattattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92155" stop="90402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91855" g_stop="91670" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="206" r_length="187" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="268" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90701" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="430" r_length="162" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E389590" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389590" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91855" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGC-AAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAAT</genome_strand>
        <mrna_strand>TTTTCTTTATCTCTGTCATCCTCCCAAAGTCAATAAGACGTAGATTTTAGAGCAAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTAGGGTTTTGGTACTAATTTCCTACACATCATCAGCTCGTGTATTGCCATCAATTAATTCTCAAG............................................................................................................AATGTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGGGAATAGAAGAATGTGAAGATAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTCTTTCTCTTAAGGATGGTTAATTATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E231173" ref_strand="+" ref_description="SGN-E231173 [cLED-5-E4]">
      <seq>tttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatctcatgggaatagaagaatgtgaagaaaaagatgaaatttgtttcaagagaagaatgactgcagaggctcatttagattatatttatanctcaacacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92156" stop="90465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91856" g_stop="91670" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91500" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="250" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90862" g_stop="90765" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="349" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E231173" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91856" e_stop="91670"/>
          <exon e_start="91561" e_stop="91500"/>
          <exon e_start="90862" e_stop="90765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGC-AAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATA-CTCAACACAA</genome_strand>
        <mrna_strand>TTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATANCTCAACACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E389758" ref_strand="+" ref_description="SGN-E389758 [TUS-4-D12]">
      <seq>tctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaaaaaaatattcagttgatcacctttcatttatttcggagttaagagataaaaaggggttcaatttaaatattttcttccaaaaagtatggcaaaaataattttttttgtacatatataaattgttgaatcgtctagatattacatataacttctaagaatatatatagagtaataaaatttttttttgtattttctttaatacacttattataatttttgagctccgattttaaaattcatatatacgactctaacttcgaattgattttttttattggaatagctcatgggaatagaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91859" stop="90544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91559" g_stop="90844" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E389758" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91559" e_stop="90844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAAT</genome_strand>
        <mrna_strand>TCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTTAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTT-AAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGGAATAGCTCATGGGAATAGAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E389827" ref_strand="+" ref_description="SGN-E389827 [TUS-4-H11]">
      <seq>tctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaaaaaaatattcagttgatcacctttcatttatttcggagttaagagataaaaaggggttcaatttaaatattttcttccaaaaagtatggcaaaaataattttttttgtacatatataaattgttgaatcgtctagatattacatataacttctaagaatatatatagagtaataaaatttttttttgtattttctttaatacacttattataatttttgagctccgatttttaaaattcatatatacgactctaacttcgaattgattttttttattgaaatagctcatgggaataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91859" stop="90549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91559" g_stop="90849" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E389827" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91559" e_stop="90849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGA</genome_strand>
        <mrna_strand>TCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTTAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTTAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E550170" ref_strand="+" ref_description="SGN-E550170 [TUS-5-D12]">
      <seq>tctattcggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaaaaaaatattcagttgatcacctttcatttatttcggagttaagagataaaaaggggttcaatttaaatattttcttccaaaaagtatggcaaaaataattttttttgtacatatataaattgttgaatcgtctagatattacatataacttctaagaatatatatagagtaataaaatttttttttgtattttctttaatacacttattataatttttgagctccgattttaaaaattcatatatacgactctaacttcgaattgattttttttattgaaatagctcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91859" stop="90555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91559" g_stop="90855" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E550170" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91559" e_stop="90855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGG</genome_strand>
        <mrna_strand>TCTATTCGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTTAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E377743" ref_strand="+" ref_description="SGN-E377743 [TUS-21-B11]">
      <seq>ctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaaaaaaatattcagttgatcacctttcatttatttcggagttaagagataaaaaggggttcaatttaaatattttcttccaaaaagtatggcaaaaataattttttttgtacatatataaattgttgaatcgtctagatattacatataacttctaagaatatatatagagtaataaaatttttttttgtattttctttaatacacttattataatttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91858" stop="90627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91558" g_stop="90927" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E377743" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91558" e_stop="90927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGA</genome_strand>
        <mrna_strand>CTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTTAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E231904" ref_strand="+" ref_description="SGN-E231904 [cLED-7-N15]">
      <seq>ctaatgggattattagtaataatccaatttcctcacaagttcaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttatgcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaaaaaaatattcagttgatcacctttcatttatttcggagttaagagataaaaaggggttcaatttaaatattttcttccaaaaagtatggcaaaaataattttttttgtacatatataaattgttgaatcgtctagatattacatataacttctaagaatatatatagagtaataaaattttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91858" stop="90661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91558" g_stop="90961" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E231904" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91558" e_stop="90961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTT</genome_strand>
        <mrna_strand>CTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTTCAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTATGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTTAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E235498" ref_strand="+" ref_description="SGN-E235498 [cLED-11-K14]">
      <seq>ctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaaaaaaatattcagttgatcacctttcatttatttcggagttaagagataaaaaggggttcaatttaaatattttcttccaaaaagtatggcaaaaataattttttttgtacatatataaattgttgaatcgtctagatattacatataacttctaagaatatatataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91858" stop="90679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91558" g_stop="90979" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E235498" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91558" e_stop="90979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGA</genome_strand>
        <mrna_strand>CTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTTAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E389747" ref_strand="+" ref_description="SGN-E389747 [TUS-4-C22]">
      <seq>ctttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaaaaaaatattcagttgatcacctttcatttatttcggagttaagagataaaaaggggttcaatttaaatattttcttccaaaagtatggcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92157" stop="90754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91857" g_stop="91670" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91054" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="695" r_length="507" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E389747" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91857" e_stop="91670"/>
          <exon e_start="91561" e_stop="91054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAA</genome_strand>
        <mrna_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTTAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCC-AAAAGTATGGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E368043" ref_strand="+" ref_description="SGN-E368043 [TUS-22-N17]">
      <seq>ctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaaaaaaatattcagttgatcacctttcatttatttcggagttaagagataaaaaggggttcaatttaaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91858" stop="90775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91558" g_stop="91075" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E368043" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91558" e_stop="91075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTT</genome_strand>
        <mrna_strand>CTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTTAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E240808" ref_strand="+" ref_description="SGN-E240808 [cLED-24-F9]">
      <seq>ctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaaaaaaatattcagttgatcacctttcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91858" stop="90817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91558" g_stop="91117" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E240808" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91558" e_stop="91117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTA</genome_strand>
        <mrna_strand>CTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTTAAAAAAATATTCAGTTGATCACCTTTCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E550301" ref_strand="+" ref_description="SGN-E550301 [TUS-5-C34]">
      <seq>ctttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaaaaaaatattcagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92157" stop="90830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91857" g_stop="91670" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91130" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="620" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E550301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91857" e_stop="91670"/>
          <exon e_start="91561" e_stop="91130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGAT</genome_strand>
        <mrna_strand>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTTAAAAAAATATTCAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E392207" ref_strand="+" ref_description="SGN-E392207 [TUS-36-A14]">
      <seq>tctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataattttttttaagaggggggggggggggggcctttcttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91859" stop="90845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91559" g_stop="91150" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E392207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91559" e_stop="91150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTT</genome_strand>
        <mrna_strand>TCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E550200" ref_strand="+" ref_description="SGN-E550200 [TUS-5-H11]">
      <seq>tctaatgggattattagtaataatccaatttcctcacgagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggaatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgttgaggcctagtaattttttagcctattgattttagctagctcgtatttgaatttttcttttttatggaaaagtaattttttatatatacgatataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="91859" stop="90856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91559" g_stop="91156" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E550200" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91559" e_stop="91156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAAT</genome_strand>
        <mrna_strand>TCTAATGGGATTATTAGTAATAATCCAATTTCCTCACGAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGAATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTGAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E231517" ref_strand="+" ref_description="SGN-E231517 [cLED-4-D9]">
      <seq>tttttctctctctctctcatcctcacaaagacaataaaaagaagaattttaagcaaaaaaaaaaatcaataaatcaaaggcaaaaaaatggagcaaaaaaatattttttttcttctttctcttatggttttactactaatttcctacacaacaacagctcgtttattgccaacaattaattctcaagaatctaatgggattattagtaataatccaatttcctcacaagtacaagaagatttcaatgatgtaagttctttctcttattttccacccttatatacggtatatgagcttatccgaatcgatatgatcagtgaaaattcatattatcgatttgagatttcacttctttcaaaaacaaaaaaaaattagctagtgagaagattttgtaattagtaaaaaaaattctttgttaattctatttagcgataaattatcaaaatattttgtttgctatgaataataaagcaataatttcaatttgtttttgtgtttaggcctagtaatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="92156" stop="90934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91856" g_stop="91670" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91561" g_stop="91234" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="515" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-E231517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91856" e_stop="91670"/>
          <exon e_start="91561" e_stop="91234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAGGTATTGATTTTTTTTTATTTTAAATTTTTTAATGAATTTCTATAGAGCTTCAAAAATTAAATTATTGTTGAATAGTAATTAATTAATTAATTATTATTTTTTTCACAGAATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTT</genome_strand>
        <mrna_strand>TTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG............................................................................................................AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E735529" ref_strand="+" ref_description="SGN-E735529 [LC02AA08]">
      <seq>catttccagccgccggccaccgcaaaatccaccatgagacgacggcgacggggggaggcctagatctagtgaaagagctagtacaccgcattactttccacttctacgccgccctccaccgccgactcccaccagtccactatcttaaaccctaaccctgtcataccttccgatcaacagtatcaccaagcgctaagatacgccattcgcatactctccagtcgaatgacaccttcaattgctgcggatgagtccgcaatggtggaatccattaagcgacggttagctactcaaggtaaatcgtctgatgccttaacttttgctgatgtatataccaaattctcgttgaaaacaggacagggtagtgtaagaaacaaatgggctgttctttatttgcttaaaaccgtctccgaagatcggaaaattcaaaaacaccagtctgcttctgtagcacctaacgggtttcttagctctgcattgtcgggtggtttaccggaattggttggtagtgaatcgaatcgtaatttcgggctcagaaatgatagttctaaggttttgaataatgtgcagggtaacatggataatagtaaggattctaggggtttggtgggtaaattgggtaaaatggagaaaggctatagtgatcgtagtctgagtgatgattttcagagtttgaattgtgtaggtgataattcgagagttttgaggggtaaaggtgaaatagggaaaggatggagtggaggggttttgatggtttccaaggatccggagaacttacgtgatatggcgtataaggagtttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="102725" stop="104123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103025" g_stop="103823" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E735529" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103025" e_stop="103823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCC-GCCGCCGGCCACCGC-AGATCCACCATG-GACGACGGCGAC-CGAAGAGCACTAGATCTAGTGAAAGAGCTAGTACACCGC-TTACTTTCCACTTCTACGCCGCCCTCCACCGCCGACTCCCACCAGTCCACTATCTTAAACCCTAACCCTGTCATACCTTCCGATCAACAGTATCACCAAGCGCTAAGATACGCCATTCGCATACTCTCCAGTCGAATGACACCTTCAATTGCTGCGGATGAGTCCGCAATGGTGGAATCCATTAAGCGACGGTTAGCTACTCAAGGTAAATCGTCTGATGCCTTAACTTTTGCTGATGTATATACCAAATTCTCGTTGAAAACAGGACAGGGTAGTGTAAGAAACAAATGGGCTGTTCTTTATTTGCTTAAAACCGTCTCCGAAGATCGGAAAATTCAAAAACACCAGTCTGCTTCTGTAGCACCTAACGGGTTTCTTAGCTCTGCATTGTCGGGTGGTTTACCGGAATTGGTTGGTAGTGAATCGAATCGTAATTTCGGGCTCAGAAATGATAGTTCTAAGGTTTTGAATAATGTGCAGGGTAACATGGATAATAGTAAGGATTCTAGGGGTTTGGTGGGTAAATTGGGTAAAATGGAGAAAGGCTATAGTGATCGTAGTCTGAGTGATGATTTTCAGAGTTTGAATTGTGTAGGTGATAATTCGAGAGTTTTGAGGGGTAAAGGTGAAGTAGGGAAGGGATGGAGTGGAGGGGTTTTGATGGTTTCCAAGGATCCGGAGAACTTACGTGATATGGCGTATAAGGAGTTTGTA</genome_strand>
        <mrna_strand>CATTTCCAGCCGCCGGCCACCGCAAAATCCACCATGAGACGACGGCGACGGGGGGAGGCCTAGATCTAGTGAAAGAGCTAGTACACCGCATTACTTTCCACTTCTACGCCGCCCTCCACCGCCGACTCCCACCAGTCCACTATCTTAAACCCTAACCCTGTCATACCTTCCGATCAACAGTATCACCAAGCGCTAAGATACGCCATTCGCATACTCTCCAGTCGAATGACACCTTCAATTGCTGCGGATGAGTCCGCAATGGTGGAATCCATTAAGCGACGGTTAGCTACTCAAGGTAAATCGTCTGATGCCTTAACTTTTGCTGATGTATATACCAAATTCTCGTTGAAAACAGGACAGGGTAGTGTAAGAAACAAATGGGCTGTTCTTTATTTGCTTAAAACCGTCTCCGAAGATCGGAAAATTCAAAAACACCAGTCTGCTTCTGTAGCACCTAACGGGTTTCTTAGCTCTGCATTGTCGGGTGGTTTACCGGAATTGGTTGGTAGTGAATCGAATCGTAATTTCGGGCTCAGAAATGATAGTTCTAAGGTTTTGAATAATGTGCAGGGTAACATGGATAATAGTAAGGATTCTAGGGGTTTGGTGGGTAAATTGGGTAAAATGGAGAAAGGCTATAGTGATCGTAGTCTGAGTGATGATTTTCAGAGTTTGAATTGTGTAGGTGATAATTCGAGAGTTTTGAGGGGTAAAGGTGAAATAGGGAAAGGATGGAGTGGAGGGGTTTTGATGGTTTCCAAGGATCCGGAGAACTTACGTGATATGGCGTATAAGGAGTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-TsfrE7/sgn_ests_tomato" ref_id="SGN-E201685" ref_strand="+" ref_description="SGN-E201685 [cLEC-11-J8]">
      <seq>cagtttggtttgctgagccaattgtgaagatgagattgatggctgttttagttgataactgtaagagcttaaagggtggggcaatggctggtgcaattcacatgcatgctcagcatggtgatccactcgttaatgattttatgaagaggttattgcgtcgggtgtgttcccctctttttgagatggtgaggagatgggtgcttgaaggagaacttgaagatatatttgctgagtttttcattgtgagtcaacctgtaaaagacgagtctctttggagagaaggttaccggcttcatgctgccatgcttcctgcttttatttcccagtctcttgccaaacagatattaaggactggtaaatcaattaactttctcagagtttgttgtgatgatcgtggttgggctgatgctgcaacagaagcagcagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-hDC54/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="103930" stop="104959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104230" g_stop="104659" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-E201685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104230" e_stop="104659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTGGTTTGCTGAGCCAATTGTGAAGATGAGATTGATGGCTGTTTTAGTTGATAACTGTAAGAGCTTAAAGGGTGGGGCAATGGCTGGTGCAATTCACATGCATGCTCAGCATGGTGATCCACTCGTTAATGATTTTATGAAGAGGTTATTGCGTCGGGTGTGTTCCCCTCTTTTTGAGATGGTGAGGAGATGGGTGCTTGAAGGAGAACTTGAAGATATATTTGCTGAGTTTTTCATTGTGAGTCAACCTGTAAAAGACGAGTCTCTTTGGAGAGAAGGTTACCGGCTTCATGCTGCCATGCTTCCTGCTTTTATTTCCCAGTCTCTTGCCAAACAGATATTAAGGACTGGTAAATCAATTAACTTTCTCAGAGTTTGTTGTGATGATCGTGGTTGGGCTGATGCTGCAACAGAAGCAGCAGCAGC</genome_strand>
        <mrna_strand>CAGTTTGGTTTGCTGAGCCAATTGTGAAGATGAGATTGATGGCTGTTTTAGTTGATAACTGTAAGAGCTTAAAGGGTGGGGCAATGGCTGGTGCAATTCACATGCATGCTCAGCATGGTGATCCACTCGTTAATGATTTTATGAAGAGGTTATTGCGTCGGGTGTGTTCCCCTCTTTTTGAGATGGTGAGGAGATGGGTGCTTGAAGGAGAACTTGAAGATATATTTGCTGAGTTTTTCATTGTGAGTCAACCTGTAAAAGACGAGTCTCTTTGGAGAGAAGGTTACCGGCTTCATGCTGCCATGCTTCCTGCTTTTATTTCCCAGTCTCTTGCCAAACAGATATTAAGGACTGGTAAATCAATTAACTTTCTCAGAGTTTGTTGTGATGATCGTGGTTGGGCTGATGCTGCAACAGAAGCAGCAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>140</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="121" PGL_stop="2469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121" e_stop="171"/>
            <exon e_start="258" e_stop="346"/>
            <exon e_start="451" e_stop="502"/>
            <exon e_start="584" e_stop="640"/>
            <exon e_start="734" e_stop="1102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121" e_stop="171" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258" e_stop="346" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="451" e_stop="502" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="584" e_stop="640" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="734" e_stop="1102" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="168" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="266" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="303" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="319" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="329" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="455" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="479" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="595" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="769" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAAATCTCAATCTTTACTTT</gDNA_template>
            <first_frame> R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S  N  L  N  L  Y  F </first_frame>
            <second_frame>  G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  I  S  I  F  T   </second_frame>
            <third_frame>   G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K  S  Q  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121" stop="171"/>
                    <exon start="258" stop="346"/>
                    <exon start="451" stop="502"/>
                    <exon start="584" stop="640"/>
                    <exon start="734" stop="814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="121" e_stop="171"/>
            <exon e_start="258" e_stop="346"/>
            <exon e_start="451" e_stop="502"/>
            <exon e_start="584" e_stop="640"/>
            <exon e_start="734" e_stop="1085"/>
            <exon e_start="2409" e_stop="2428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.824"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121" e_stop="171" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258" e_stop="346" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="451" e_stop="502" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="584" e_stop="640" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="734" e_stop="1085" e_length="352"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1086" i_stop="2408" i_length="1323"/>
          </intron>
          <exon e_serial="6" e_score="0.824">
            <gDNA_exon_boundary e_start="2409" e_stop="2428" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
              <exon start="2409" stop="2425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="168" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="319" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="329" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="455" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="469" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
              <exon start="2409" stop="2428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257623" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="469" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
              <exon start="2409" stop="2425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220597" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="479" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="595" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="769" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA : AACAGAAAAATAAAAAATCA</gDNA_template>
            <first_frame> R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S   : K  Q  K  N  K  K  S </first_frame>
            <second_frame>  G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  :  N  R  K  I  K  N   </second_frame>
            <third_frame>   G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K :   T  E  K  *  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121" stop="171"/>
                    <exon start="258" stop="346"/>
                    <exon start="451" stop="502"/>
                    <exon start="584" stop="640"/>
                    <exon start="734" stop="814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="121" e_stop="171"/>
            <exon e_start="258" e_stop="346"/>
            <exon e_start="451" e_stop="502"/>
            <exon e_start="584" e_stop="640"/>
            <exon e_start="734" e_stop="1085"/>
            <exon e_start="2126" e_stop="2151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.808"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121" e_stop="171" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258" e_stop="346" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="451" e_stop="502" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="584" e_stop="640" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="734" e_stop="1085" e_length="352"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1086" i_stop="2125" i_length="1040"/>
          </intron>
          <exon e_serial="6" e_score="0.808">
            <gDNA_exon_boundary e_start="2126" e_stop="2151" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="168" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="318" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
              <exon start="2126" stop="2151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226367" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="319" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="329" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="455" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="479" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="487" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
              <exon start="2126" stop="2151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226772" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="595" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="769" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA : AAAAAAATTAACATTAAAAAAAAAAA</gDNA_template>
            <first_frame> R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S   : K  K  N  *  H  *  K  K  K </first_frame>
            <second_frame>  G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  :  K  K  I  N  I  K  K  K   </second_frame>
            <third_frame>   G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K :   K  K  L  T  L  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121" stop="171"/>
                    <exon start="258" stop="346"/>
                    <exon start="451" stop="502"/>
                    <exon start="584" stop="640"/>
                    <exon start="734" stop="814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="121" e_stop="171"/>
            <exon e_start="258" e_stop="346"/>
            <exon e_start="451" e_stop="502"/>
            <exon e_start="584" e_stop="640"/>
            <exon e_start="734" e_stop="1085"/>
            <exon e_start="2385" e_stop="2469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.544" e_score="1.000"/>
          <exon-only e_score="0.494"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121" e_stop="171" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258" e_stop="346" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="451" e_stop="502" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="584" e_stop="640" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="734" e_stop="1085" e_length="352"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.544">
            <gDNA_intron_boundary i_start="1086" i_stop="2384" i_length="1299"/>
          </intron>
          <exon e_serial="6" e_score="0.494">
            <gDNA_exon_boundary e_start="2385" e_stop="2469" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
              <exon start="2385" stop="2469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="140" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259652" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="168" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="319" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="329" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="455" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="479" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="595" stop="640"/>
              <exon start="734" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257457" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="769" stop="1085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220461" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAATATTTTGATGGTTTTGGTTTTTTCAA : AGAATACGAGTATATAGAAGAAAGAACAGAAAAATAAAAAATCATAGAGCATAAAAGTTATTGTAAGAATATGGGAATATAGTCG</gDNA_template>
            <first_frame> R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  I  L  M  V  L  V  F  S   : K  N  T  S  I  *  K  K  E  Q  K  N  K  K  S  *  S  I  K  V  I  V  R  I  W  E  Y  S   </first_frame>
            <second_frame>  G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I  F  *  W  F  W  F  F  Q  :  R  I  R  V  Y  R  R  K  N  R  K  I  K  N  H  R  A  *  K  L  L  *  E  Y  G  N  I  V  </second_frame>
            <third_frame>   G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *  Y  F  D  G  F  G  F  F  K :   E  Y  E  Y  I  E  E  R  T  E  K  *  K  I  I  E  H  K  S  Y  C  K  N  M  G  I  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121" stop="171"/>
                    <exon start="258" stop="346"/>
                    <exon start="451" stop="502"/>
                    <exon start="584" stop="640"/>
                    <exon start="734" stop="814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="121" e_stop="171"/>
            <exon e_start="258" e_stop="346"/>
            <exon e_start="451" e_stop="502"/>
            <exon e_start="584" e_stop="640"/>
            <exon e_start="734" e_stop="1058"/>
            <exon e_start="2405" e_stop="2425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.810"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121" e_stop="171" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258" e_stop="346" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="451" e_stop="502" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="584" e_stop="640" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="734" e_stop="1058" e_length="325"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1059" i_stop="2404" i_length="1346"/>
          </intron>
          <exon e_serial="6" e_score="0.810">
            <gDNA_exon_boundary e_start="2405" e_stop="2425" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1058"/>
              <exon start="2405" stop="2425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="168" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="329" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="479" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="611" stop="640"/>
              <exon start="734" stop="1058"/>
              <exon start="2405" stop="2425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268720" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA : AAAGAACAGAAAAATAAAAAA</gDNA_template>
            <first_frame> R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I   : K  R  T  E  K  *  K  </first_frame>
            <second_frame>  G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  :  K  E  Q  K  N  K  K </second_frame>
            <third_frame>   G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  * :   K  N  R  K  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121" stop="171"/>
                    <exon start="258" stop="346"/>
                    <exon start="451" stop="502"/>
                    <exon start="584" stop="640"/>
                    <exon start="734" stop="814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="121" e_stop="171"/>
            <exon e_start="258" e_stop="346"/>
            <exon e_start="451" e_stop="502"/>
            <exon e_start="584" e_stop="640"/>
            <exon e_start="734" e_stop="1060"/>
            <exon e_start="2125" e_stop="2156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.719"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121" e_stop="171" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258" e_stop="346" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="451" e_stop="502" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="584" e_stop="640" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="734" e_stop="1060" e_length="327"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1061" i_stop="2124" i_length="1064"/>
          </intron>
          <exon e_serial="6" e_score="0.719">
            <gDNA_exon_boundary e_start="2125" e_stop="2156" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="168" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="329" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="475" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1060"/>
              <exon start="2125" stop="2156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267512" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="479" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAAT : AAAAAAAATTAACATTAAAAAAAAAAATTTTA</gDNA_template>
            <first_frame> R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  :  K  K  N  *  H  *  K  K  K  F   </first_frame>
            <second_frame>  G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I :   K  K  I  N  I  K  K  K  N  F  </second_frame>
            <third_frame>   G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *   : *  K  K  L  T  L  K  K  K  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121" stop="171"/>
                    <exon start="258" stop="346"/>
                    <exon start="451" stop="502"/>
                    <exon start="584" stop="640"/>
                    <exon start="734" stop="814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="121" e_stop="171"/>
            <exon e_start="258" e_stop="346"/>
            <exon e_start="451" e_stop="502"/>
            <exon e_start="584" e_stop="640"/>
            <exon e_start="734" e_stop="1058"/>
            <exon e_start="1893" e_stop="1907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121" e_stop="171" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258" e_stop="346" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="451" e_stop="502" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="584" e_stop="640" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="734" e_stop="1058" e_length="325"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1059" i_stop="1892" i_length="834"/>
          </intron>
          <exon e_serial="6" e_score="0.800">
            <gDNA_exon_boundary e_start="1893" e_stop="1907" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="168" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="329" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="471" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1058"/>
              <exon start="1893" stop="1907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268754" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="479" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="7" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTA : AAAGTAAAATAAAAA</gDNA_template>
            <first_frame> R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I   : K  S  K  I  K  </first_frame>
            <second_frame>  G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  :  K  V  K  *  K </second_frame>
            <third_frame>   G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  * :   K  *  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121" stop="171"/>
                    <exon start="258" stop="346"/>
                    <exon start="451" stop="502"/>
                    <exon start="584" stop="640"/>
                    <exon start="734" stop="814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="121" e_stop="171"/>
            <exon e_start="258" e_stop="346"/>
            <exon e_start="451" e_stop="502"/>
            <exon e_start="584" e_stop="640"/>
            <exon e_start="734" e_stop="1060"/>
            <exon e_start="2409" e_stop="2428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121" e_stop="171" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258" e_stop="346" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="451" e_stop="502" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="584" e_stop="640" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="734" e_stop="1060" e_length="327"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1061" i_stop="2408" i_length="1348"/>
          </intron>
          <exon e_serial="6" e_score="0.750">
            <gDNA_exon_boundary e_start="2409" e_stop="2428" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1060"/>
              <exon start="2409" stop="2428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259244" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="168" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213865" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="329" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="1055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="479" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218649" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="8" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAGATTGTTGAGTTGTTGATCTGCCAAAAATAAATTCCTCTTAGATTGGTCATTTTAGGATTATATTATATGACCTTGGTGAAATAACAAGCAGACTCAAAAACAAGTTTTGTTTTCTGAGGTTTTATTAGTATTTTGAATTCTGAAAAGAAAAAAAAAGAGTTTTTTTTAGGCTTGGTTACTGTAAAACTTTGATATGCAAGTTTCTACTATGTTCTAATTAAT : AACAGAAAAATAAAAAATCA</gDNA_template>
            <first_frame> R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E  I  V  E  L  L  I  C  Q  K  *  I  P  L  R  L  V  I  L  G  L  Y  Y  M  T  L  V  K  *  Q  A  D  S  K  T  S  F  V  F  *  G  F  I  S  I  L  N  S  E  K  K  K  K  E  F  F  L  G  L  V  T  V  K  L  *  Y  A  S  F  Y  Y  V  L  I  N  :  N  R  K  I  K  N   </first_frame>
            <second_frame>  G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L  R  L  L  S  C  *  S  A  K  N  K  F  L  L  D  W  S  F  *  D  Y  I  I  *  P  W  *  N  N  K  Q  T  Q  K  Q  V  L  F  S  E  V  L  L  V  F  *  I  L  K  R  K  K  K  S  F  F  *  A  W  L  L  *  N  F  D  M  Q  V  S  T  M  F  *  L  I :   T  E  K  *  K  I  </second_frame>
            <third_frame>   G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  D  C  *  V  V  D  L  P  K  I  N  S  S  *  I  G  H  F  R  I  I  L  Y  D  L  G  E  I  T  S  R  L  K  N  K  F  C  F  L  R  F  Y  *  Y  F  E  F  *  K  E  K  K  R  V  F  F  R  L  G  Y  C  K  T  L  I  C  K  F  L  L  C  S  N  *   : *  Q  K  N  K  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121" stop="171"/>
                    <exon start="258" stop="346"/>
                    <exon start="451" stop="502"/>
                    <exon start="584" stop="640"/>
                    <exon start="734" stop="814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3082" PGL_stop="783"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3082" e_stop="3068"/>
            <exon e_start="1087" e_stop="783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.477" acc_prob="0.000" e_score="0.733"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.733">
            <gDNA_exon_boundary e_start="3082" e_stop="3068" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.477" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3067" i_stop="1088" i_length="1980"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="1087" e_stop="783" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3082" stop="3068"/>
              <exon start="1087" stop="783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257151" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTGCATTTTTTTT : ATTTGAAAAAACCAAAACCATCAAAATATTAATTAGAACATAGTAGAAACTTGCATATCAAAGTTTTACAGTAACCAAGCCTAAAAAAAACTCTTTTTTTTTCTTTTCAGAATTCAAAATACTAATAAAACCTCAGAAAACAAAACTTGTTTTTGAGTCTGCTTGTTATTTCACCAAGGTCATATAATATAATCCTAAAATGACCAATCTAAGAGGAATTTATTTTTGGCAGATCAACAACTCAACAATCTCAACACTTGGAACTGCTGAAATTTAGTAGGGCTCAACGGGCTTGCGGAAGCTTG</gDNA_template>
            <first_frame> S  C  I  F  F  :  I  *  K  N  Q  N  H  Q  N  I  N  *  N  I  V  E  T  C  I  S  K  F  Y  S  N  Q  A  *  K  K  L  F  F  F  L  F  R  I  Q  N  T  N  K  T  S  E  N  K  T  C  F  *  V  C  L  L  F  H  Q  G  H  I  I  *  S  *  N  D  Q  S  K  R  N  L  F  L  A  D  Q  Q  L  N  N  L  N  T  W  N  C  *  N  L  V  G  L  N  G  L  A  E  A   </first_frame>
            <second_frame>  L  A  F  F  L :   F  E  K  T  K  T  I  K  I  L  I  R  T  *  *  K  L  A  Y  Q  S  F  T  V  T  K  P  K  K  N  S  F  F  F  F  S  E  F  K  I  L  I  K  P  Q  K  T  K  L  V  F  E  S  A  C  Y  F  T  K  V  I  *  Y  N  P  K  M  T  N  L  R  G  I  Y  F  W  Q  I  N  N  S  T  I  S  T  L  G  T  A  E  I  *  *  G  S  T  G  L  R  K  L  </second_frame>
            <third_frame>   L  H  F  F   : Y  L  K  K  P  K  P  S  K  Y  *  L  E  H  S  R  N  L  H  I  K  V  L  Q  *  P  S  L  K  K  T  L  F  F  S  F  Q  N  S  K  Y  *  *  N  L  R  K  Q  N  L  F  L  S  L  L  V  I  S  P  R  S  Y  N  I  I  L  K  *  P  I  *  E  E  F  I  F  G  R  S  T  T  Q  Q  S  Q  H  L  E  L  L  K  F  S  R  A  Q  R  A  C  G  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0100J12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8615" PGL_stop="3971"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8615" e_stop="8522"/>
            <exon e_start="7359" e_stop="7289"/>
            <exon e_start="7204" e_stop="6990"/>
            <exon e_start="6881" e_stop="6853"/>
            <exon e_start="6770" e_stop="6732"/>
            <exon e_start="6625" e_stop="6486"/>
            <exon e_start="5055" e_stop="5011"/>
            <exon e_start="4918" e_stop="4828"/>
            <exon e_start="4534" e_stop="4432"/>
            <exon e_start="4344" e_stop="3971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8615" e_stop="8522" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7359" e_stop="7289" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7204" e_stop="6990" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="6989" i_stop="6882" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6881" e_stop="6853" e_length="29"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6770" e_stop="6732" e_length="39"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6625" e_stop="6486" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5055" e_stop="5011" e_length="45"/>
          </exon>
          <intron i_serial="7" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4918" e_stop="4828" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4534" e_stop="4432" e_length="103"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="0.984">
            <gDNA_exon_boundary e_start="4344" e_stop="3971" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8615" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8593" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8593" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8593" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8593" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8590" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8585" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8585" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8582" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8581" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8581" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8581" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8579" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8577" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8577" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8577" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8576" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8575" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8574" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8572" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8556" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7158" stop="6990"/>
              <exon start="6881" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6609" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6609" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6593" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="3971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371889" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6516" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4861" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4861" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353687" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4452" stop="4432"/>
              <exon start="4344" stop="3979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275788" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATAGTACACCCTAGCAGTCTCTTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG : GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG : GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGA : GGAAGAGGATGACGAAGATGATTATGATG : ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG : GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG : GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG : GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG : ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG : GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTGAATCATG</gDNA_template>
            <first_frame> H  S  T  P  *  Q  S  L  S  S  S  I  S  P  L  K  P  *  F  L  S  K  T  L  K  A  A  M  E  F  W   : G  A  E  V  K  S  G  E  P  L  T  V  Q  P  G  D  G  M  V  L  H  L  S  Q  :  A  S  L  G  E  L  K  K  D  K  S  E  S  A  C  L  S  V  N  I  D  G  K  K  L  V  L  G  T  L  N  S  E  K  V  P  Q  Q  Q  F  D  L  V  F  D  K  D  F  E  L  S  H  N  L  K  S  G  S  V  Y  F  F  G  Y  K  A  T  N  P  F  D  E :   E  E  D  D  E  D  D  Y  D   : D  S  D  E  D  I  P  L  T  L  A  N  S   : G  K  P  D  P  K  E  A  G  K  S  N  A  G  K  D  S  A  S  G  K  Q  K  V  R  I  V  E  P  T  K  D  D  E  D  E  S  S  D  D  D  G  S  D  L  G  E  :  D  E  D  D  S  D  E  S  E  E  E  T  P  K  K  :  A  E  P  A  K  K  R  K  A  D  S  A  T  K  T  P  V  T  D  K  K  A  K  L  T  T  P  Q  K  T   : D  G  K  K  G  G  V  H  V  A  T  P  H  P  S  K  Q  A  S  K  T  P  K  S  A  G  S  H  H  C  K  P  C  N  R :   S  F  G  S  E  G  A  L  E  S  H  S  K  A  K  H  S  A  G  K  *  I  D  M  E  T  F  S  L  C  L  V  V  T  Y  D  Q  K  R  A  F  L  V  V  F  F  P  V  S  I  W  F  I  *  C  K  G  K  M  S  Y  I  Y  Y  D  L  S  L  G  Q  S  S  V  L  M  F  K  T  C  Y  V  F  N  E  S  F  G  L  N  Q  R  M  L  L  P  V  G  I  L  L  F  G  K  K  K  T  N  V  N  I  T  I  S  I  Y  H  *  V  F  T  T  L  N  H  </first_frame>
            <second_frame>  I  V  H  P  S  S  L  F  L  P  P  F  L  L  *  N  P  N  F  S  L  K  P  *  K  Q  L  W  S  F  G  :  V  L  R  *  K  V  E  S  H  *  L  Y  S  L  E  M  G  W  F  C  I  F  H  R :   H  L  *  V  S  *  R  R  I  N  Q  K  V  P  A  C  Q  *  I  L  M  A  R  N  L  F  L  G  H  S  T  Q  R  R  C  L  N  S  N  L  T  W  F  L  I  K  T  L  N  Y  L  T  T  *  K  V  A  V  S  T  F  L  D  T  R  Q  L  T  R  L  M   : R  K  R  M  T  K  M  I  M  M  :  I  L  M  R  I  S  P  S  L  L  P  T  V  :  V  N  L  T  L  K  R  L  G  S  L  T  L  E  R  I  L  L  Q  E  S  R  R  *  G  L  W  S  L  L  K  M  M  K  M  R  A  L  M  M  M  V  L  T  W  E  R :   M  K  T  T  L  M  R  V  R  R  R  H  Q  R  R :   L  S  L  Q  K  R  G  R  Q  I  Q  L  Q  K  H  L  S  L  I  K  R  Q  N  *  Q  H  L  K  K  L  :  M  A  K  K  V  V  S  M  *  Q  H  R  T  L  L  S  R  L  V  R  L  Q  N  Q  L  D  L  I  T  A  S  R  A  T   : G  V  L  V  L  K  V  L  S  N  L  T  R  K  L  N  T  V  L  E  S  K  *  T  W  R  H  L  V  F  V  W  L  L  P  M  I  R  R  E  L  F  *  S  F  F  S  P  F  R  F  G  S  S  D  V  K  E  R  *  V  T  S  I  M  I  Y  L  *  V  N  H  L  F  *  C  L  R  L  V  M  F  S  M  R  V  L  D  *  I  R  E  C  Y  C  L  L  V  S  C  Y  L  G  K  K  K  L  M  L  T  L  Q  S  Q  S  I  I  K  Y  L  L  L  *  I  M </second_frame>
            <third_frame>   *  Y  T  L  A  V  S  F  F  L  H  F  S  S  K  T  L  I  S  L  *  N  P  K  S  S  Y  G  V  L  G :   C  *  G  E  K  W  R  A  I  N  C  T  A  W  R  W  D  G  F  A  S  F  T   : G  I  S  R  *  V  E  E  G  *  I  R  K  C  L  L  V  S  E  Y  *  W  Q  E  T  C  S  W  D  T  Q  L  R  E  G  A  S  T  A  I  *  P  G  F  *  *  R  L  *  I  I  S  Q  L  E  K  W  Q  C  L  L  F  W  I  Q  G  N  *  P  V  *  *  :  G  R  G  *  R  R  *  L  *  * :   F  *  *  G  Y  P  P  H  S  C  Q  Q  W :   *  T  *  P  *  R  G  W  E  V  *  R  W  K  G  F  C  F  R  K  A  E  G  E  D  C  G  A  Y  *  R  *  *  R  *  E  L  *  *  *  W  F  *  L  G  R   : G  *  R  R  L  *  *  E  *  G  G  D  T  K  E   : G  *  A  C  K  K  E  E  G  R  F  S  Y  K  N  T  C  H  *  *  K  G  K  I  D  N  T  S  K  N  * :   W  Q  K  R  W  C  P  C  S  N  T  A  P  F  *  A  G  *  *  D  S  K  I  S  W  I  S  S  L  Q  A  V  Q  Q  :  E  F  W  F  *  R  C  S  R  I  S  L  E  S  *  T  Q  C  W  K  V  N  R  H  G  D  I  *  S  L  F  G  C  Y  L  *  S  E  E  S  F  F  S  R  F  F  P  R  F  D  L  V  H  L  M  *  R  K  D  E  L  H  L  L  *  S  I  S  R  S  I  I  C  F  D  V  *  D  L  L  C  F  Q  *  E  F  W  I  E  S  E  N  V  I  A  C  W  Y  L  V  I  W  E  K  K  N  *  C  *  H  Y  N  L  N  L  S  L  S  I  Y  Y  F  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8561" stop="8522"/>
                    <exon start="7359" stop="7289"/>
                    <exon start="7204" stop="6990"/>
                    <exon start="6881" stop="6853"/>
                    <exon start="6770" stop="6732"/>
                    <exon start="6625" stop="6486"/>
                    <exon start="5055" stop="5011"/>
                    <exon start="4918" stop="4828"/>
                    <exon start="4534" stop="4432"/>
                    <exon start="4344" stop="4281"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSKTLKAAMEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESACLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDKDFELSHNLKSGSVYFFGYKATNPFDEEEDDEDDYDDSDEDIPLTLANSGKPDPKEAGKSNAGKDSASGKQKVRIVEPTKDDEDESSDDDGSDLGEDEDDSDESEEETPKKAEPAKKRKADSATKTPVTDKKAKLTTPQKTDGKKGGVHVATPHPSKQASKTPKSAGSHHCKPCNRSFGSEGALESHSKAKHSAGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8593" e_stop="8522"/>
            <exon e_start="7359" e_stop="7289"/>
            <exon e_start="7204" e_stop="6853"/>
            <exon e_start="6770" e_stop="6732"/>
            <exon e_start="6625" e_stop="6486"/>
            <exon e_start="5055" e_stop="5011"/>
            <exon e_start="4918" e_stop="4828"/>
            <exon e_start="4534" e_stop="4432"/>
            <exon e_start="4344" e_stop="3971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.853" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.997"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.913" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8593" e_stop="8522" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.853" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8521" i_stop="7360" i_length="1162"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7359" e_stop="7289" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7288" i_stop="7205" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="7204" e_stop="6853" e_length="352"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6852" i_stop="6771" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6770" e_stop="6732" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6731" i_stop="6626" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6625" e_stop="6486" e_length="140"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6485" i_stop="5056" i_length="1430"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5055" e_stop="5011" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.913" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5010" i_stop="4919" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4918" e_stop="4828" e_length="91"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4827" i_stop="4535" i_length="293"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4534" e_stop="4432" e_length="103"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="4431" i_stop="4345" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="0.984">
            <gDNA_exon_boundary e_start="4344" e_stop="3971" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8593" stop="8522"/>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7359" stop="7289"/>
              <exon start="7204" stop="6853"/>
              <exon start="6770" stop="6732"/>
              <exon start="6625" stop="6486"/>
              <exon start="5055" stop="5032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6609" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6609" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6593" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="3971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371889" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6516" stop="6486"/>
              <exon start="5055" stop="5011"/>
              <exon start="4918" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4861" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4861" stop="4828"/>
              <exon start="4534" stop="4432"/>
              <exon start="4344" stop="4011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353687" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4452" stop="4432"/>
              <exon start="4344" stop="3979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275788" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTCCTCCATTTCTCCTCTAAAACCCTAATTTCTCTCTAAAACCCTAAAAGCAGCTATGGAGTTTTGGG : GTGCTGAGGTGAAAAGTGGAGAGCCATTAACTGTACAGCCTGGAGATGGGATGGTTTTGCATCTTTCACAG : GCATCTCTAGGTGAGTTGAAGAAGGATAAATCAGAAAGTGCCTGCTTGTCAGTGAATATTGATGGCAAGAAACTTGTTCTTGGGACACTCAACTCAGAGAAGGTGCCTCAACAGCAATTTGACCTGGTTTTTGATAAAGACTTTGAATTATCTCACAACTTGAAAAGTGGCAGTGTCTACTTTTTTGGATACAAGGCAACTAACCCGTTTGATGAATATCCTTTTTTATTTGTCTGTTAACTTTTATTTCTTATAGGCATTTATTTTTCGTTCGATGTAAAATTTTGTGTATTTGTTTCATTGACCAAACTTCTGTGGTTCACGGAAGAGGATGACGAAGATGATTATGATG : ATTCTGATGAGGATATCCCCCTCACTCTTGCCAACAGTG : GTAAACCTGACCCTAAAGAGGCTGGGAAGTCTAACGCTGGAAAGGATTCTGCTTCAGGAAAGCAGAAGGTGAGGATTGTGGAGCCTACTAAAGATGATGAAGATGAGAGCTCTGATGATGATGGTTCTGACTTGGGAGAG : GATGAAGACGACTCTGATGAGAGTGAGGAGGAGACACCAAAGAAG : GCTGAGCCTGCAAAAAAGAGGAAGGCAGATTCAGCTACAAAAACACCTGTCACTGATAAAAAGGCAAAATTGACAACACCTCAAAAAACTG : ATGGCAAAAAAGGTGGTGTCCATGTAGCAACACCGCACCCTTCTAAGCAGGCTAGTAAGACTCCAAAATCAGCTGGATCTCATCACTGCAAGCCGTGCAACAG : GAGTTTTGGTTCTGAAGGTGCTCTCGAATCTCACTCGAAAGCTAAACACAGTGCTGGAAAGTAAATAGACATGGAGACATTTAGTCTTTGTTTGGTTGTTACCTATGATCAGAAGAGAGCTTTTTTAGTCGTTTTTTTCCCCGTTTCGATTTGGTTCATCTGATGTAAAGGAAAGATGAGTTACATCTATTATGATCTATCTCTAGGTCAATCATCTGTTTTGATGTTTAAGACTTGTTATGTTTTCAATGAGAGTTTTGGATTGAATCAGAGAATGTTATTGCCTGTTGGTATCTTGTTATTTGGGAAAAAAAAAACTAATGTTAACATTACAATCTCAATCTATCATTAAGTATTTACTACTTTGAATCATG</gDNA_template>
            <first_frame> F  L  P  P  F  L  L  *  N  P  N  F  S  L  K  P  *  K  Q  L  W  S  F  G  :  V  L  R  *  K  V  E  S  H  *  L  Y  S  L  E  M  G  W  F  C  I  F  H  R :   H  L  *  V  S  *  R  R  I  N  Q  K  V  P  A  C  Q  *  I  L  M  A  R  N  L  F  L  G  H  S  T  Q  R  R  C  L  N  S  N  L  T  W  F  L  I  K  T  L  N  Y  L  T  T  *  K  V  A  V  S  T  F  L  D  T  R  Q  L  T  R  L  M  N  I  L  F  Y  L  S  V  N  F  Y  F  L  *  A  F  I  F  R  S  M  *  N  F  V  Y  L  F  H  *  P  N  F  C  G  S  R  K  R  M  T  K  M  I  M  M  :  I  L  M  R  I  S  P  S  L  L  P  T  V  :  V  N  L  T  L  K  R  L  G  S  L  T  L  E  R  I  L  L  Q  E  S  R  R  *  G  L  W  S  L  L  K  M  M  K  M  R  A  L  M  M  M  V  L  T  W  E  R :   M  K  T  T  L  M  R  V  R  R  R  H  Q  R  R :   L  S  L  Q  K  R  G  R  Q  I  Q  L  Q  K  H  L  S  L  I  K  R  Q  N  *  Q  H  L  K  K  L  :  M  A  K  K  V  V  S  M  *  Q  H  R  T  L  L  S  R  L  V  R  L  Q  N  Q  L  D  L  I  T  A  S  R  A  T   : G  V  L  V  L  K  V  L  S  N  L  T  R  K  L  N  T  V  L  E  S  K  *  T  W  R  H  L  V  F  V  W  L  L  P  M  I  R  R  E  L  F  *  S  F  F  S  P  F  R  F  G  S  S  D  V  K  E  R  *  V  T  S  I  M  I  Y  L  *  V  N  H  L  F  *  C  L  R  L  V  M  F  S  M  R  V  L  D  *  I  R  E  C  Y  C  L  L  V  S  C  Y  L  G  K  K  K  L  M  L  T  L  Q  S  Q  S  I  I  K  Y  L  L  L  *  I  M </first_frame>
            <second_frame>  F  F  L  H  F  S  S  K  T  L  I  S  L  *  N  P  K  S  S  Y  G  V  L  G :   C  *  G  E  K  W  R  A  I  N  C  T  A  W  R  W  D  G  F  A  S  F  T   : G  I  S  R  *  V  E  E  G  *  I  R  K  C  L  L  V  S  E  Y  *  W  Q  E  T  C  S  W  D  T  Q  L  R  E  G  A  S  T  A  I  *  P  G  F  *  *  R  L  *  I  I  S  Q  L  E  K  W  Q  C  L  L  F  W  I  Q  G  N  *  P  V  *  *  I  S  F  F  I  C  L  L  T  F  I  S  Y  R  H  L  F  F  V  R  C  K  I  L  C  I  C  F  I  D  Q  T  S  V  V  H  G  R  G  *  R  R  *  L  *  * :   F  *  *  G  Y  P  P  H  S  C  Q  Q  W :   *  T  *  P  *  R  G  W  E  V  *  R  W  K  G  F  C  F  R  K  A  E  G  E  D  C  G  A  Y  *  R  *  *  R  *  E  L  *  *  *  W  F  *  L  G  R   : G  *  R  R  L  *  *  E  *  G  G  D  T  K  E   : G  *  A  C  K  K  E  E  G  R  F  S  Y  K  N  T  C  H  *  *  K  G  K  I  D  N  T  S  K  N  * :   W  Q  K  R  W  C  P  C  S  N  T  A  P  F  *  A  G  *  *  D  S  K  I  S  W  I  S  S  L  Q  A  V  Q  Q  :  E  F  W  F  *  R  C  S  R  I  S  L  E  S  *  T  Q  C  W  K  V  N  R  H  G  D  I  *  S  L  F  G  C  Y  L  *  S  E  E  S  F  F  S  R  F  F  P  R  F  D  L  V  H  L  M  *  R  K  D  E  L  H  L  L  *  S  I  S  R  S  I  I  C  F  D  V  *  D  L  L  C  F  Q  *  E  F  W  I  E  S  E  N  V  I  A  C  W  Y  L  V  I  W  E  K  K  N  *  C  *  H  Y  N  L  N  L  S  L  S  I  Y  Y  F  E  S   </second_frame>
            <third_frame>   S  S  S  I  S  P  L  K  P  *  F  L  S  K  T  L  K  A  A  M  E  F  W   : G  A  E  V  K  S  G  E  P  L  T  V  Q  P  G  D  G  M  V  L  H  L  S  Q  :  A  S  L  G  E  L  K  K  D  K  S  E  S  A  C  L  S  V  N  I  D  G  K  K  L  V  L  G  T  L  N  S  E  K  V  P  Q  Q  Q  F  D  L  V  F  D  K  D  F  E  L  S  H  N  L  K  S  G  S  V  Y  F  F  G  Y  K  A  T  N  P  F  D  E  Y  P  F  L  F  V  C  *  L  L  F  L  I  G  I  Y  F  S  F  D  V  K  F  C  V  F  V  S  L  T  K  L  L  W  F  T  E  E  D  D  E  D  D  Y  D   : D  S  D  E  D  I  P  L  T  L  A  N  S   : G  K  P  D  P  K  E  A  G  K  S  N  A  G  K  D  S  A  S  G  K  Q  K  V  R  I  V  E  P  T  K  D  D  E  D  E  S  S  D  D  D  G  S  D  L  G  E  :  D  E  D  D  S  D  E  S  E  E  E  T  P  K  K  :  A  E  P  A  K  K  R  K  A  D  S  A  T  K  T  P  V  T  D  K  K  A  K  L  T  T  P  Q  K  T   : D  G  K  K  G  G  V  H  V  A  T  P  H  P  S  K  Q  A  S  K  T  P  K  S  A  G  S  H  H  C  K  P  C  N  R :   S  F  G  S  E  G  A  L  E  S  H  S  K  A  K  H  S  A  G  K  *  I  D  M  E  T  F  S  L  C  L  V  V  T  Y  D  Q  K  R  A  F  L  V  V  F  F  P  V  S  I  W  F  I  *  C  K  G  K  M  S  Y  I  Y  Y  D  L  S  L  G  Q  S  S  V  L  M  F  K  T  C  Y  V  F  N  E  S  F  G  L  N  Q  R  M  L  L  P  V  G  I  L  L  F  G  K  K  K  T  N  V  N  I  T  I  S  I  Y  H  *  V  F  T  T  L  N  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6964" stop="6853"/>
                    <exon start="6770" stop="6732"/>
                    <exon start="6625" stop="6486"/>
                    <exon start="5055" stop="5011"/>
                    <exon start="4918" stop="4828"/>
                    <exon start="4534" stop="4432"/>
                    <exon start="4344" stop="4281"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFLIGIYFSFDVKFCVFVSLTKLLWFTEEDDEDDYDDSDEDIPLTLANSGKPDPKEAGKSNAGKDSASGKQKVRIVEPTKDDEDESSDDDGSDLGEDEDDSDESEEETPKKAEPAKKRKADSATKTPVTDKKAKLTTPQKTDGKKGGVHVATPHPSKQASKTPKSAGSHHCKPCNRSFGSEGALESHSKAKHSAGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8561" stop="8522"/>
                    <exon start="7359" stop="7289"/>
                    <exon start="7204" stop="6965"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLSKTLKAAMEFWGAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDKSESACLSVNIDGKKLVLGTLNSEKVPQQQFDLVFDKDFELSHNLKSGSVYFFGYKATNPFDEYPFLFVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="11941" PGL_stop="20096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11941" e_stop="11981"/>
            <exon e_start="12080" e_stop="12197"/>
            <exon e_start="13079" e_stop="13149"/>
            <exon e_start="13977" e_stop="14033"/>
            <exon e_start="14180" e_stop="14271"/>
            <exon e_start="15042" e_stop="15089"/>
            <exon e_start="15595" e_stop="15715"/>
            <exon e_start="15805" e_stop="15851"/>
            <exon e_start="16912" e_stop="16993"/>
            <exon e_start="18716" e_stop="18792"/>
            <exon e_start="18936" e_stop="19055"/>
            <exon e_start="19333" e_stop="19407"/>
            <exon e_start="19495" e_stop="20096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.507" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.303" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.805" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.989" e_score="0.992"/>
          <exon-intron don_prob="0.957" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.001" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11941" e_stop="11981" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.963">
            <gDNA_intron_boundary i_start="11982" i_stop="12079" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12080" e_stop="12197" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.507" acc_prob="0.958">
            <gDNA_intron_boundary i_start="12198" i_stop="13078" i_length="881"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13079" e_stop="13149" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.303" acc_prob="0.969">
            <gDNA_intron_boundary i_start="13150" i_stop="13976" i_length="827"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13977" e_stop="14033" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.805" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14034" i_stop="14179" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14180" e_stop="14271" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14272" i_stop="15041" i_length="770"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15042" e_stop="15089" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.760">
            <gDNA_intron_boundary i_start="15090" i_stop="15594" i_length="505"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="15595" e_stop="15715" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.942" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15716" i_stop="15804" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15805" e_stop="15851" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.957" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15852" i_stop="16911" i_length="1060"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16912" e_stop="16993" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="18716" e_stop="18792" e_length="77"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.811">
            <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="18936" e_stop="19055" e_length="120"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="19333" e_stop="19407" e_length="75"/>
          </exon>
          <intron i_serial="12" don_prob="0.985" acc_prob="0.001">
            <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87"/>
          </intron>
          <exon e_serial="13" e_score="0.988">
            <gDNA_exon_boundary e_start="19495" e_stop="20096" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11941" stop="11981"/>
              <exon start="12080" stop="12197"/>
              <exon start="13079" stop="13149"/>
              <exon start="13977" stop="14033"/>
              <exon start="14180" stop="14271"/>
              <exon start="15042" stop="15089"/>
              <exon start="15595" stop="15715"/>
              <exon start="15805" stop="15851"/>
              <exon start="16912" stop="16948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15054" stop="15089"/>
              <exon start="15595" stop="15715"/>
              <exon start="15805" stop="15851"/>
              <exon start="16912" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19055"/>
              <exon start="19333" stop="19407"/>
              <exon start="19495" stop="19544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15625" stop="15715"/>
              <exon start="15805" stop="15851"/>
              <exon start="16912" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19055"/>
              <exon start="19333" stop="19387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15625" stop="15715"/>
              <exon start="15805" stop="15851"/>
              <exon start="16912" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15661" stop="15715"/>
              <exon start="15805" stop="15851"/>
              <exon start="16912" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19055"/>
              <exon start="19333" stop="19407"/>
              <exon start="19495" stop="19544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16947" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19055"/>
              <exon start="19333" stop="19407"/>
              <exon start="19495" stop="19861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16947" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19055"/>
              <exon start="19333" stop="19407"/>
              <exon start="19495" stop="19657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16947" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19055"/>
              <exon start="19333" stop="19407"/>
              <exon start="19495" stop="19640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19365" stop="19407"/>
              <exon start="19495" stop="20096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376858" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCG : GTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATG : GTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACT : GCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTT : GTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGACTG : GTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAA : ATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG : CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC : ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG : GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG : GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG : GGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAG : CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGTTTGTCCACGTTGCTTGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGCACTACCCAAGCATGAGAAGGGACGAACTCATGAATGAATATTACATCAAATTCGAGCTTTTGCCCTATCTATGCAGCTTTCTCATCTCCTCTACGAAAGTAATCTTTTAATCTATTTCAGTTAGGATCAACACTGTATCCAGGTTGTAACTGATTGCTTAGCTTTTGAAAGTTTTTCCAGAACCAACTTGTACACTAGATGTACTTTATCATGGCAGGATTTAAATGTGCTGCTTGTATTGAATGCCAACTATGGAATTATTTTTCATGGTTTGTAATCTTGGAGCAGCTTACTAATGTGTGCTGAAATTTTCGAATGATTTTCCCGACTTTCTAGTTTTTTGTATGCACCTTGACTAATTTCAGGAGATATTTGCTACGTTCCACCAG</gDNA_template>
            <first_frame> S  I  I  S  S  F  L  S  L  H  H  G  L  R :   C  L  C  *  S  D  F  F  S  I  *  L  P  L  D  L  F  Y  P  E  N  L  F  L  G  R  L  Y  L  M  E  L  D  S  I  I  V  A  M  :  V  Y  Y  H  F  C  C  W  F  C  F  L  E  L  G  R  R  *  I  L  F  H  L  L :   L  *  Q  I  E  D  L  S  F  C  P  Q  H  L  S  L  V  F  L :   *  H  *  C  F  I  W  L  A  *  T  H  V  Q  R  V  H  H  *  N  L  M  S  Q  E  I  *  S  M  T   : G  G  L  G  Y  N  *  I  L  N  S  W  A  L  I  S   : N  F  S  L  L  E  L  V  *  W  D  G  Y  L  S  I  F  Q  F  L  Q  N  V  L  *  R  L  N  *  A  N  Q  *  F  S  T  S  Y  F  V  G :   S  T  S  L  T  T  S  S  M  K  S  S  *  P  P   : H  G  I  *  *  Q  R  G  W  A  T  C  W  F  L  V  I  *  S  L  Y  R  S  P  S  V  F  R :   V  G  G  F  *  V  T  K  W  S  *  Q  Q  Q  Q  *  L  P  I  A  S  S  F  L  L   : G  T  R  C  S  E  E  P  I  S  R  S  M  Y  L  K  R  I  P  R  H  P  Y  G  V  V  L  Q  K  L  L  G  E  S  C  L  L  L  A  I   : G  A  L  H  G  T  V  I  T  S  G  I  C  C  W  H  R  L  L  V  Y  L  V  V  *   : A  L  W  F  H  T  F  T  P  Y  I  F  S  F  Y  S  Y  G  G  R  E  G  T  K  L  D  V  Q  R  S  T  K  M  C  G  L  N  T  V  N  L  F  L  T  G  S  Y  L  T  F  T  S  S  I  V  C  P  R  C  L  C  I  R  V  R  I  S  L  T  V  P  H  Y  P  S  M  R  R  D  E  L  M  N  E  Y  Y  I  K  F  E  L  L  P  Y  L  C  S  F  L  I  S  S  T  K  V  I  F  *  S  I  S  V  R  I  N  T  V  S  R  L  *  L  I  A  *  L  L  K  V  F  P  E  P  T  C  T  L  D  V  L  Y  H  G  R  I  *  M  C  C  L  Y  *  M  P  T  M  E  L  F  F  M  V  C  N  L  G  A  A  Y  *  C  V  L  K  F  S  N  D  F  P  D  F  L  V  F  C  M  H  L  D  *  F  Q  E  I  F  A  T  F  H  Q </first_frame>
            <second_frame>  Q  *  S  L  H  F  S  H  S  I  M  D  F   : G  V  Y  V  D  R  I  F  S  L  F  S  Y  R  W  I  Y  S  T  R  K  T  C  S  W  G  D  F  I  *  W  N  S  T  P  L  S  L  Q  W :   F  I  I  T  S  V  V  G  F  A  S  W  S  W  V  A  D  E  S  C  F  T  Y   : C  Y  S  R  *  R  T  *  A  F  V  H  N  T  Y  L  *  C  S   : C  D  I  D  A  L  F  G  W  P  E  L  T  C  K  E  F  I  T  E  T  S  C  L  R  K  S  N  P  *  L  :  V  V  W  D  T  T  E  S  *  I  H  G  H  *  S  Q  :  I  F  L  C  *  S  W  Y  D  G  M  V  T  Y  Q  S  F  S  S  C  K  M  C  C  R  G  *  I  E  P  I  N  D  S  L  P  A  I  L  W   : A  L  H  P  *  L  L  L  L  *  R  V  H  D  L  H  :  M  G  Y  N  S  R  E  V  G  L  H  A  G  F  W  *  S  S  L  Y  T  V  H  L  Q  Y  S   : G  L  V  A  F  E  *  Q  S  G  A  N  N  S  S  N  N  C  Q  L  P  R  L  S  Y  W  :  V  L  G  V  Q  R  S  Q  *  A  E  A  C  I  *  K  G  S  Q  G  T  H  M  G  *  S  S  K  S  Y  W  G  K  V  A  C  F  W  L  L  :  G  H  C  T  A  L  *  L  P  R  G  F  V  A  G  I  V  F  *  F  T  L  W  Y  K  :  L  C  G  S  I  L  L  P  H  I  S  S  H  S  T  H  M  E  G  E  K  G  R  S  *  M  C  R  E  V  Q  R  C  V  G  *  I  P  *  T  C  S  L  Q  D  L  T  L  R  L  L  A  Q  S  F  V  H  V  A  C  A  L  E  S  E  L  A  S  L  Y  R  T  T  Q  A  *  E  G  T  N  S  *  M  N  I  T  S  N  S  S  F  C  P  I  Y  A  A  F  S  S  P  L  R  K  *  S  F  N  L  F  Q  L  G  S  T  L  Y  P  G  C  N  *  L  L  S  F  *  K  F  F  Q  N  Q  L  V  H  *  M  Y  F  I  M  A  G  F  K  C  A  A  C  I  E  C  Q  L  W  N  Y  F  S  W  F  V  I  L  E  Q  L  T  N  V  C  *  N  F  R  M  I  F  P  T  F  *  F  F  V  C  T  L  T  N  F  R  R  Y  L  L  R  S  T   </second_frame>
            <third_frame>   N  N  L  F  I  S  L  T  P  S  W  T  S  :  V  S  M  L  I  G  F  F  L  Y  L  A  T  V  G  S  I  L  P  G  K  L  V  P  G  A  T  L  S  D  G  T  R  L  H  Y  R  C  N   : G  L  L  S  L  L  L  L  V  L  L  L  G  V  G  S  Q  M  N  L  V  S  P  T  :  A  I  A  D  R  G  L  E  L  L  S  T  T  L  I  F  S  V  L  :  V  T  L  M  L  Y  L  V  G  L  N  S  R  A  K  S  S  S  L  K  P  H  V  S  G  N  L  I  H  D  W :   W  F  G  I  Q  L  N  P  E  F  M  G  I  D  L  K :   F  F  F  V  R  A  G  M  M  G  W  L  L  I  N  L  S  V  L  A  K  C  V  V  E  A  K  L  S  Q  S  M  I  L  Y  Q  L  F  C  G  :  L  Y  I  L  D  Y  F  F  Y  E  E  F  M  T  S  T :   W  D  I  I  A  E  R  L  G  Y  M  L  V  F  G  D  L  V  F  I  P  F  T  F  S  I  Q  :  G  W  W  L  L  S  N  K  V  E  L  T  T  A  A  I  I  A  N  C  L  V  F  L  I  G :   Y  S  V  F  R  G  A  N  K  Q  K  H  V  F  K  K  D  P  K  A  P  I  W  G  S  P  P  K  V  I  G  G  K  L  L  A  S  G  Y  W :   G  I  A  R  H  C  N  Y  L  G  D  L  L  L  A  S  S  F  S  L  P  C  G  I  S :   S  V  V  P  Y  F  Y  P  I  Y  L  L  I  L  L  I  W  R  E  R  R  D  E  A  R  C  A  E  K  Y  K  D  V  W  A  E  Y  R  K  L  V  P  Y  R  I  L  P  Y  V  Y  *  L  N  R  L  S  T  L  L  V  H  *  S  Q  N  *  P  H  C  T  A  L  P  K  H  E  K  G  R  T  H  E  *  I  L  H  Q  I  R  A  F  A  L  S  M  Q  L  S  H  L  L  Y  E  S  N  L  L  I  Y  F  S  *  D  Q  H  C  I  Q  V  V  T  D  C  L  A  F  E  S  F  S  R  T  N  L  Y  T  R  C  T  L  S  W  Q  D  L  N  V  L  L  V  L  N  A  N  Y  G  I  I  F  H  G  L  *  S  W  S  S  L  L  M  C  A  E  I  F  E  *  F  S  R  L  S  S  F  L  Y  A  P  *  L  I  S  G  D  I  C  Y  V  P  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11943" stop="11981"/>
                    <exon start="12080" stop="12197"/>
                    <exon start="13079" stop="13149"/>
                    <exon start="13977" stop="14033"/>
                    <exon start="14180" stop="14271"/>
                    <exon start="15042" stop="15089"/>
                    <exon start="15595" stop="15715"/>
                    <exon start="15805" stop="15851"/>
                    <exon start="16912" stop="16993"/>
                    <exon start="18716" stop="18792"/>
                    <exon start="18936" stop="19055"/>
                    <exon start="19333" stop="19407"/>
                    <exon start="19495" stop="19648"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNLFISLTPSWTSVSMLIGFFLYLATVGSILPGKLVPGATLSDGTRLHYRCNGLLSLLLLVLLLGVGSQMNLVSPTAIADRGLELLSTTLIFSVLVTLMLYLVGLNSRAKSSSLKPHVSGNLIHDWWFGIQLNPEFMGIDLKFFFVRAGMMGWLLINLSVLAKCVVEAKLSQSMILYQLFCGLYILDYFFYEEFMTSTWDIIAERLGYMLVFGDLVFIPFTFSIQGWWLLSNKVELTTAAIIANCLVFLIGYSVFRGANKQKHVFKKDPKAPIWGSPPKVIGGKLLASGYWGIARHCNYLGDLLLASSFSLPCGISSVVPYFYPIYLLILLIWRERRDEARCAEKYKDVWAEYRKLVPYRILPYVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21870" PGL_stop="19637"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21870" e_stop="21850"/>
            <exon e_start="20103" e_stop="19637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.571"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="21870" e_stop="21850" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21849" i_stop="20104" i_length="1746"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="20103" e_stop="19637" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21870" stop="21850"/>
              <exon start="20103" stop="19637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227040" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATATTATTCCTTATTTTACA : ATGTTGCCTGGTGGAACGTAGCAAATATCTCCTGAAATTAGTCAAGGTGCATACAAAAAACTAGAAAGTCGGGAAAATCATTCGAAAATTTCAGCACACATTAGTAAGCTGCTCCAAGATTACAAACCATGAAAAATAATTCCATAGTTGGCATTCAATACAAGCAGCACATTTAAATCCTGCCATGATAAAGTACATCTAGTGTACAAGTTGGTTCTGGAAAAACTTTCAAAAGCTAAGCAATCAGTTACAACCTGGATACAGTGTTGATCCTAACTGAAATAGATTAAAAGATTACTTTCGTAGAGGAGATGAGAAAGCTGCATAGATAGGGCAAAAGCTCGAATTTGATGTAATATTCATTCATGAGTTCGTCCCTTCTCATGCTTGGGTAGTGCGGTACAGTGAGGCTAATTCTGACTCTAATGCACAAGCAACGTGGACAAACGATTGAGCTAGTAAACGTA</gDNA_template>
            <first_frame> Y  I  I  P  Y  F  T  :  M  L  P  G  G  T  *  Q  I  S  P  E  I  S  Q  G  A  Y  K  K  L  E  S  R  E  N  H  S  K  I  S  A  H  I  S  K  L  L  Q  D  Y  K  P  *  K  I  I  P  *  L  A  F  N  T  S  S  T  F  K  S  C  H  D  K  V  H  L  V  Y  K  L  V  L  E  K  L  S  K  A  K  Q  S  V  T  T  W  I  Q  C  *  S  *  L  K  *  I  K  R  L  L  S  *  R  R  *  E  S  C  I  D  R  A  K  A  R  I  *  C  N  I  H  S  *  V  R  P  F  S  C  L  G  S  A  V  Q  *  G  *  F  *  L  *  C  T  S  N  V  D  K  R  L  S  *  *  T   </first_frame>
            <second_frame>  I  L  F  L  I  L  Q :   C  C  L  V  E  R  S  K  Y  L  L  K  L  V  K  V  H  T  K  N  *  K  V  G  K  I  I  R  K  F  Q  H  T  L  V  S  C  S  K  I  T  N  H  E  K  *  F  H  S  W  H  S  I  Q  A  A  H  L  N  P  A  M  I  K  Y  I  *  C  T  S  W  F  W  K  N  F  Q  K  L  S  N  Q  L  Q  P  G  Y  S  V  D  P  N  *  N  R  L  K  D  Y  F  R  R  G  D  E  K  A  A  *  I  G  Q  K  L  E  F  D  V  I  F  I  H  E  F  V  P  S  H  A  W  V  V  R  Y  S  E  A  N  S  D  S  N  A  Q  A  T  W  T  N  D  *  A  S  K  R  </second_frame>
            <third_frame>   Y  Y  S  L  F  Y   : N  V  A  W  W  N  V  A  N  I  S  *  N  *  S  R  C  I  Q  K  T  R  K  S  G  K  S  F  E  N  F  S  T  H  *  *  A  A  P  R  L  Q  T  M  K  N  N  S  I  V  G  I  Q  Y  K  Q  H  I  *  I  L  P  *  *  S  T  S  S  V  Q  V  G  S  G  K  T  F  K  S  *  A  I  S  Y  N  L  D  T  V  L  I  L  T  E  I  D  *  K  I  T  F  V  E  E  M  R  K  L  H  R  *  G  K  S  S  N  L  M  *  Y  S  F  M  S  S  S  L  L  M  L  G  *  C  G  T  V  R  L  I  L  T  L  M  H  K  Q  R  G  Q  T  I  E  L  V  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0100J12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="40570" PGL_stop="43125"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40570" e_stop="40698"/>
            <exon e_start="40823" e_stop="40902"/>
            <exon e_start="40989" e_stop="41073"/>
            <exon e_start="41154" e_stop="41245"/>
            <exon e_start="41321" e_stop="41389"/>
            <exon e_start="41687" e_stop="41723"/>
            <exon e_start="41807" e_stop="41889"/>
            <exon e_start="42333" e_stop="42797"/>
            <exon e_start="42925" e_stop="42961"/>
            <exon e_start="43082" e_stop="43125"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.839" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.470" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.791" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40570" e_stop="40698" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.871">
            <gDNA_intron_boundary i_start="40699" i_stop="40822" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40823" e_stop="40902" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.949">
            <gDNA_intron_boundary i_start="40903" i_stop="40988" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40989" e_stop="41073" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.945" acc_prob="0.839">
            <gDNA_intron_boundary i_start="41074" i_stop="41153" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41154" e_stop="41245" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.963">
            <gDNA_intron_boundary i_start="41246" i_stop="41320" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41321" e_stop="41389" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.889">
            <gDNA_intron_boundary i_start="41390" i_stop="41686" i_length="297"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41687" e_stop="41723" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.974" acc_prob="0.470">
            <gDNA_intron_boundary i_start="41724" i_stop="41806" i_length="83"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41807" e_stop="41889" e_length="83"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41890" i_stop="42332" i_length="443"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42333" e_stop="42797" e_length="465"/>
          </exon>
          <intron i_serial="8" don_prob="0.791" acc_prob="0.975">
            <gDNA_intron_boundary i_start="42798" i_stop="42924" i_length="127"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="42925" e_stop="42961" e_length="37"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42962" i_stop="43081" i_length="120"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="43082" e_stop="43125" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40570" stop="40698"/>
              <exon start="40823" stop="40902"/>
              <exon start="40989" stop="41073"/>
              <exon start="41154" stop="41245"/>
              <exon start="41321" stop="41389"/>
              <exon start="41687" stop="41719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40584" stop="40698"/>
              <exon start="40823" stop="40902"/>
              <exon start="40989" stop="41073"/>
              <exon start="41154" stop="41245"/>
              <exon start="41321" stop="41389"/>
              <exon start="41687" stop="41719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41179" stop="41245"/>
              <exon start="41321" stop="41389"/>
              <exon start="41687" stop="41723"/>
              <exon start="41807" stop="41889"/>
              <exon start="42333" stop="42797"/>
              <exon start="42925" stop="42961"/>
              <exon start="43082" stop="43125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAGAAAAGACAGCAAACACAATGGATTCACTAGACTGGGACGCAGTGAGGTGTGCAGATGTCAATGAGATATCCCATACCATTAGAGAACGGGGGATGAACAATATGCTAGCAGAGAGAATCAAG : GATTTCCTTAATCGGATTTTTAGAGAACATGGAAGTATTGATCTTGAATGGCTGAGAGACGTTCCACCAGACAAAGCAAA : AGAGTATCTACTAAGCATCAGGGGCTTGGGCCTGAAGAGCGTAGAGTGTGTGCGACTTTTAACACTTCACAACCTTGCTTTTCCG : GTCGACACAAATGTTGGGCGTATAGCTGTTAGACTGGGATGGGTGCCCCTGCAGCCACTGCCAGAGTCACTACAATTGCATCTTCTGGAATT : GTACCCTGTGCTGGAGTCAATTCAAAAATACCTCTGGCCACGTCTCTGCAAGCTTGATCAAAGAACATT : ATATGAGTTGCATTACCATATGATCACTTTTGGAAAG : GTCTTCTGTTCAAAAAGCAAACCCAACTGCAACGCATGTCCAATGAGAGGAGAATGCAGACACTTCGCAAGTGCTTTTGCAAG : CGCAAGGCTTGCCCTGCCAGCACCAGAAGAGAAAAGTATAGTGAGTGCAACAGAGAACAATGCAGCTGACCAGAATCCATTCCAGAACTTCAATCAACAGCCGCTAACCTTACCCCAGGCTAATCAAACACCTTTAGAGCATCCCAAATTGATCAACTCCGCACCTATTATTGAGGTGCCAGCAACACCACAGCCCATTGTCGAAGAGCCTGCCTCACCTGAGCCAGAGCAAGATGCTCCCGAAATCGACATTGAAGATGTTTGCTTTGAAGATCCTGATGAAATTCCTACAATTGAATTGAATATGGCGCAGTTCACTCAAAATGTGAAGAACTTTGTGCAAAACAATATGGAGCTTCAACAGGTCGAAATGTCAAAAGCCTTAGTAGCTTTAACTCCAGCAGCTGCTTCAATTCCTACACCTAAACTTAAGCATATAAGCCGGCTCAGAACTGAACATCAAGT : ATATGAACTTCCAGATTCTCATCCTCTTCTTGAAGGG : TTCGAGAAAAGAGAACCAGATGATCCATCCTCCTATCTTCTGGC</gDNA_template>
            <first_frame> K  R  E  K  T  A  N  T  M  D  S  L  D  W  D  A  V  R  C  A  D  V  N  E  I  S  H  T  I  R  E  R  G  M  N  N  M  L  A  E  R  I  K  :  D  F  L  N  R  I  F  R  E  H  G  S  I  D  L  E  W  L  R  D  V  P  P  D  K  A  K :   E  Y  L  L  S  I  R  G  L  G  L  K  S  V  E  C  V  R  L  L  T  L  H  N  L  A  F  P  :  V  D  T  N  V  G  R  I  A  V  R  L  G  W  V  P  L  Q  P  L  P  E  S  L  Q  L  H  L  L  E  L :   Y  P  V  L  E  S  I  Q  K  Y  L  W  P  R  L  C  K  L  D  Q  R  T  L :   Y  E  L  H  Y  H  M  I  T  F  G  K  :  V  F  C  S  K  S  K  P  N  C  N  A  C  P  M  R  G  E  C  R  H  F  A  S  A  F  A  S :   A  R  L  A  L  P  A  P  E  E  K  S  I  V  S  A  T  E  N  N  A  A  D  Q  N  P  F  Q  N  F  N  Q  Q  P  L  T  L  P  Q  A  N  Q  T  P  L  E  H  P  K  L  I  N  S  A  P  I  I  E  V  P  A  T  P  Q  P  I  V  E  E  P  A  S  P  E  P  E  Q  D  A  P  E  I  D  I  E  D  V  C  F  E  D  P  D  E  I  P  T  I  E  L  N  M  A  Q  F  T  Q  N  V  K  N  F  V  Q  N  N  M  E  L  Q  Q  V  E  M  S  K  A  L  V  A  L  T  P  A  A  A  S  I  P  T  P  K  L  K  H  I  S  R  L  R  T  E  H  Q  V :   Y  E  L  P  D  S  H  P  L  L  E  G  :  F  E  K  R  E  P  D  D  P  S  S  Y  L  L   </first_frame>
            <second_frame>  K  E  K  R  Q  Q  T  Q  W  I  H  *  T  G  T  Q  *  G  V  Q  M  S  M  R  Y  P  I  P  L  E  N  G  G  *  T  I  C  *  Q  R  E  S  R :   I  S  L  I  G  F  L  E  N  M  E  V  L  I  L  N  G  *  E  T  F  H  Q  T  K  Q   : K  S  I  Y  *  A  S  G  A  W  A  *  R  A  *  S  V  C  D  F  *  H  F  T  T  L  L  F  R :   S  T  Q  M  L  G  V  *  L  L  D  W  D  G  C  P  C  S  H  C  Q  S  H  Y  N  C  I  F  W  N   : C  T  L  C  W  S  Q  F  K  N  T  S  G  H  V  S  A  S  L  I  K  E  H   : Y  M  S  C  I  T  I  *  S  L  L  E  R :   S  S  V  Q  K  A  N  P  T  A  T  H  V  Q  *  E  E  N  A  D  T  S  Q  V  L  L  Q   : A  Q  G  L  P  C  Q  H  Q  K  R  K  V  *  *  V  Q  Q  R  T  M  Q  L  T  R  I  H  S  R  T  S  I  N  S  R  *  P  Y  P  R  L  I  K  H  L  *  S  I  P  N  *  S  T  P  H  L  L  L  R  C  Q  Q  H  H  S  P  L  S  K  S  L  P  H  L  S  Q  S  K  M  L  P  K  S  T  L  K  M  F  A  L  K  I  L  M  K  F  L  Q  L  N  *  I  W  R  S  S  L  K  M  *  R  T  L  C  K  T  I  W  S  F  N  R  S  K  C  Q  K  P  *  *  L  *  L  Q  Q  L  L  Q  F  L  H  L  N  L  S  I  *  A  G  S  E  L  N  I  K   : Y  M  N  F  Q  I  L  I  L  F  L  K  G :   S  R  K  E  N  Q  M  I  H  P  P  I  F  W  </second_frame>
            <third_frame>   K  R  K  D  S  K  H  N  G  F  T  R  L  G  R  S  E  V  C  R  C  Q  *  D  I  P  Y  H  *  R  T  G  D  E  Q  Y  A  S  R  E  N  Q   : G  F  P  *  S  D  F  *  R  T  W  K  Y  *  S  *  M  A  E  R  R  S  T  R  Q  S  K  :  R  V  S  T  K  H  Q  G  L  G  P  E  E  R  R  V  C  A  T  F  N  T  S  Q  P  C  F  S   : G  R  H  K  C  W  A  Y  S  C  *  T  G  M  G  A  P  A  A  T  A  R  V  T  T  I  A  S  S  G  I  :  V  P  C  A  G  V  N  S  K  I  P  L  A  T  S  L  Q  A  *  S  K  N  I  :  I  *  V  A  L  P  Y  D  H  F  W  K   : G  L  L  F  K  K  Q  T  Q  L  Q  R  M  S  N  E  R  R  M  Q  T  L  R  K  C  F  C  K  :  R  K  A  C  P  A  S  T  R  R  E  K  Y  S  E  C  N  R  E  Q  C  S  *  P  E  S  I  P  E  L  Q  S  T  A  A  N  L  T  P  G  *  S  N  T  F  R  A  S  Q  I  D  Q  L  R  T  Y  Y  *  G  A  S  N  T  T  A  H  C  R  R  A  C  L  T  *  A  R  A  R  C  S  R  N  R  H  *  R  C  L  L  *  R  S  *  *  N  S  Y  N  *  I  E  Y  G  A  V  H  S  K  C  E  E  L  C  A  K  Q  Y  G  A  S  T  G  R  N  V  K  S  L  S  S  F  N  S  S  S  C  F  N  S  Y  T  *  T  *  A  Y  K  P  A  Q  N  *  T  S  S  :  I  *  T  S  R  F  S  S  S  S  *  R   : V  R  E  K  R  T  R  *  S  I  L  L  S  S  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40570" stop="40698"/>
                    <exon start="40823" stop="40902"/>
                    <exon start="40989" stop="41073"/>
                    <exon start="41154" stop="41245"/>
                    <exon start="41321" stop="41389"/>
                    <exon start="41687" stop="41723"/>
                    <exon start="41807" stop="41889"/>
                    <exon start="42333" stop="42797"/>
                    <exon start="42925" stop="42961"/>
                    <exon start="43082" stop="43123"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KREKTANTMDSLDWDAVRCADVNEISHTIRERGMNNMLAERIKDFLNRIFREHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYHMITFGKVFCSKSKPNCNACPMRGECRHFASAFASARLALPAPEEKSIVSATENNAADQNPFQNFNQQPLTLPQANQTPLEHPKLINSAPIIEVPATPQPIVEEPASPEPEQDAPEIDIEDVCFEDPDEIPTIELNMAQFTQNVKNFVQNNMELQQVEMSKALVALTPAAASIPTPKLKHISRLRTEHQVYELPDSHPLLEGFEKREPDDPSSYLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="52730" PGL_stop="68287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52730" e_stop="53870"/>
            <exon e_start="59632" e_stop="59933"/>
            <exon e_start="60021" e_stop="60165"/>
            <exon e_start="60419" e_stop="60522"/>
            <exon e_start="61786" e_stop="61994"/>
            <exon e_start="64000" e_stop="64117"/>
            <exon e_start="64206" e_stop="64411"/>
            <exon e_start="64552" e_stop="64592"/>
            <exon e_start="64888" e_stop="64956"/>
            <exon e_start="65100" e_stop="65200"/>
            <exon e_start="65284" e_stop="65368"/>
            <exon e_start="65443" e_stop="65541"/>
            <exon e_start="66364" e_stop="66432"/>
            <exon e_start="66532" e_stop="66663"/>
            <exon e_start="67434" e_stop="67528"/>
            <exon e_start="67617" e_stop="67819"/>
            <exon e_start="68042" e_stop="68287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.983" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.678" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.805" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.353" acc_prob="0.415" e_score="1.000"/>
          <exon-intron don_prob="0.570" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.710" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="52730" e_stop="53870" e_length="1141"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.983">
            <gDNA_intron_boundary i_start="53871" i_stop="59631" i_length="5761"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59632" e_stop="59933" e_length="302"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59934" i_stop="60020" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60021" e_stop="60165" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60166" i_stop="60418" i_length="253"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60419" e_stop="60522" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.678">
            <gDNA_intron_boundary i_start="60523" i_stop="61785" i_length="1263"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61786" e_stop="61994" e_length="209"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61995" i_stop="63999" i_length="2005"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="64000" e_stop="64117" e_length="118"/>
          </exon>
          <intron i_serial="6" don_prob="0.991" acc_prob="0.805">
            <gDNA_intron_boundary i_start="64118" i_stop="64205" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64206" e_stop="64411" e_length="206"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.956">
            <gDNA_intron_boundary i_start="64412" i_stop="64551" i_length="140"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64552" e_stop="64592" e_length="41"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="64593" i_stop="64887" i_length="295"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64888" e_stop="64956" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="64957" i_stop="65099" i_length="143"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="65100" e_stop="65200" e_length="101"/>
          </exon>
          <intron i_serial="10" don_prob="0.353" acc_prob="0.415">
            <gDNA_intron_boundary i_start="65201" i_stop="65283" i_length="83"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="65284" e_stop="65368" e_length="85"/>
          </exon>
          <intron i_serial="11" don_prob="0.570" acc_prob="0.989">
            <gDNA_intron_boundary i_start="65369" i_stop="65442" i_length="74"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="65443" e_stop="65541" e_length="99"/>
          </exon>
          <intron i_serial="12" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="65542" i_stop="66363" i_length="822"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="66364" e_stop="66432" e_length="69"/>
          </exon>
          <intron i_serial="13" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66433" i_stop="66531" i_length="99"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="66532" e_stop="66663" e_length="132"/>
          </exon>
          <intron i_serial="14" don_prob="0.710" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66664" i_stop="67433" i_length="770"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="67434" e_stop="67528" e_length="95"/>
          </exon>
          <intron i_serial="15" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67529" i_stop="67616" i_length="88"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="67617" e_stop="67819" e_length="203"/>
          </exon>
          <intron i_serial="16" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67820" i_stop="68041" i_length="222"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="68042" e_stop="68287" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52730" stop="53870"/>
              <exon start="59632" stop="59933"/>
              <exon start="60021" stop="60165"/>
              <exon start="60419" stop="60522"/>
              <exon start="61786" stop="61994"/>
              <exon start="64000" stop="64117"/>
              <exon start="64206" stop="64411"/>
              <exon start="64552" stop="64592"/>
              <exon start="64888" stop="64956"/>
              <exon start="65100" stop="65200"/>
              <exon start="65284" stop="65368"/>
              <exon start="65443" stop="65541"/>
              <exon start="66364" stop="66432"/>
              <exon start="66532" stop="66663"/>
              <exon start="67434" stop="67528"/>
              <exon start="67617" stop="67819"/>
              <exon start="68042" stop="68281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53100" stop="53870"/>
              <exon start="59632" stop="59933"/>
              <exon start="60021" stop="60165"/>
              <exon start="60419" stop="60522"/>
              <exon start="61786" stop="61994"/>
              <exon start="64000" stop="64117"/>
              <exon start="64206" stop="64411"/>
              <exon start="64552" stop="64592"/>
              <exon start="64888" stop="64956"/>
              <exon start="65100" stop="65200"/>
              <exon start="65284" stop="65368"/>
              <exon start="65443" stop="65541"/>
              <exon start="66364" stop="66432"/>
              <exon start="66532" stop="66663"/>
              <exon start="67434" stop="67528"/>
              <exon start="67617" stop="67819"/>
              <exon start="68042" stop="68276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60087" stop="60165"/>
              <exon start="60419" stop="60522"/>
              <exon start="61786" stop="61994"/>
              <exon start="64000" stop="64117"/>
              <exon start="64206" stop="64411"/>
              <exon start="64552" stop="64592"/>
              <exon start="64888" stop="64928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67776" stop="67819"/>
              <exon start="68042" stop="68287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355067" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67776" stop="67819"/>
              <exon start="68042" stop="68287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356143" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTATAAACGAATCAAATTAATATACACATACTTTTCTGACATATTTATACATTTAATAAAATATCCGATGTGCTTTTAAGTCAAGTGCTTACTGTTCTTATGAACTCAAATCAGTCAAAAGTCATAAGTTTATCATCTCTAAGTCGTAATTTTTCAGCTTATAAGCATTTTTGGATTGATCGGAAACGGAAGAAAGTGAGGCCAAATGGGTTGTAAGAGTAATACTTGAAATTATATAGGGAATCATTTGAAATATGATAAAAGTAGAGGGGAGTTTAATATAATTAAGTTAAACTTATAACTTAAAGTCGAAAATTCCAGGAATATTACGACTAAAACAAGACTTCCCCCATCTTTTTTTTCTCTCACTTCTCATTCGACAAGTACGAAGAAGAAGAAGAAAAGAGAGAAAACTTTTAGTGAGAGAAAGTCTTTGAGAGAGAGAGGGAGTTGAAGCTATAGTGTAATGAACAATTTCTAGCTAGGGTTTTGTTGAATTGATAAATTATTGAGATGGAAATGTCTACTAGACGATCGAATTATACTTTGTTGAGTCAAGTTGCAGATGACAATTACCTTCCTCCGCCACCGAAGTACTCCGTCACTGGCGGTGGCGGTGGAGGTGGAGGAGTAGCACCGTATTATGAGTCTCATTCTGGTGAAAAGGGTAAAGGCAAAACAGGTGATAATAGAGGATTTGATTGGGATTTGAGTGATCACCGTAGTAATATGATGCAAGCGTCGAATCGGATCGGTGCGGCGGCATTTCCAGGTTCGATTGGCTTGCAGAGGCAATCAAGTGGGAGCAGCTTTGGTGAAAGTTCGATCTCCGGGGAGTATTACATGCCGTCGTTGTCTAATGCGGAGGCGTCATTTGGATATCTCAATGATGGCGGTGGCGGTGCTGAAGTGAGGATGAAGCCGTTGGAAGCTAATTTGTTCGGTGGCTCGTCTTCTAAGAGCTGGGCGCAGCAGACTGAGGAGAGTTATCAGCTGCAGTTAGCTTTGGCTTTACGGCTTTCTTCCGAAGCTACCTGTGCTGATGATCCAAATTTTTTGGATCATGTGCCTGATGAATCCGCATCCCGTGCTTCAGCTTCAGCTGCTTCGGCGGAGACCCTTTCCCATCGATTCTGG : GTAAATGGATGCTTGTCGTACTTTGACAAAGTGCCTGATGGATTTTACTTGATCCATGGGATGGATCCATATGTCTGGATTGTCTGCTCAGATCTACAAGAAAATGCCCGGGTTCCATCTATTGAATCAATGAGAGCTGTTGATCCCTCTGTAGTACCATCAGTTGAAGTGATTTTGATTGATCGGCGTACGGATCCAAGCTTGAAAGAACTGCAGAATCGGATCCATAGTCTCTCTCCTACTTGTGGCACAACAAAAGAAGTTGTTGATCAGCTTGCTCAGCTGGTCTGCAGTCATATGGG : GGGCGCAACTTCTGCCGGAGAAGATGAGTTGGTTCCTTTGTGGAAGGAGTGTAGTTATGAGCTGAAGGATTGTCTAGGATCCACTGTGCTTCCCATTGGTAGCCTGTCTGTTGGCCTTTGCAGGCATCGAGCTTTGCTATTTAAA : GTTCTAGCTGACGCCATTGGTTTACCATGTCGAATTGCCAAAGGATGTAAATATTGTAACAGAGCTGATGCTTCCTCATGTTTAGTTCGTTTTGGACCTGACAG : GGAGTACCTGGTTGATTTGATTGGGAGCCCTGGATGCTTATGCGAACCAGATTCCTCGCTCAACGGCCCATCTTCTATCTCAATCTCTTCACCATTGCGATTTCCGAGATTCAGAGAAGTTGAACCGACAACTGATTTCAGGTCACTTGCCAAACAGTATTTCTCGGATTGTCAATCGCTTAATCTTGTGTTTGAGGAATCTTCAGCAG : GAGCTGCTGTTGATGGAGACGCAGGACAAACTGACCGAAATAACATTGAGAGAAACAGTGCTGTCACTGGTCCAAGTAACCGTGATGAAGTTTCTCGGTTACCTGTGCCTGCAATTAG : GGACATGGCTCCTGTGAAGTATGTCCGTCCAGTTTTGCATGGAGATACACAATTATCAGACCCAAGAGATATAGGGAATGATATGCGATTTCTTGAGAGAGGAAGTCAACTTGTTCCCTCTAAAATAAGTAGAGACATTGCCCTTGAAATAGAAGATTTTGATATACCCTGGGAAGATCTTGTTCTGAAGGAGAGGATTGGGGCAG : GGTCTTTTGGTACTGTTCACCGTGCTGATTGGAATGGTTCT : GATGTTGCTGTGAAGATACTCATGGAACAAGATTTTCATGCAGAGCGATTCAAGGAATTTTTGCGGGAG : GTTGCAATTATGAAGCGGTTGCGACACCCAAATATTGTGCTTTTTATGGGTGCAGTTACTCAGCGACCAAACTTGTCCATAGTTACAGAATATTTATCAAG : AGGTAGCTTATATAGACTTCTTCATAAACCTGGTGCTAGGGAGGTTTTGGATGAAAGGTGTCGGTTGTCTATGGCATATGATGTG : GCAAAGGGGATGAATTATCTACATAAACGCAATCCTCCCATCGTTCATAGAGATTTGAAATCTCCAAATCTTTTAGTGGACAAAAAATACACAGTGAAG : GTCTGTGATTTTGGCCTTTCTCGTTTAAAAGCGAACACATTTCTCTCGTCAAAGTCTGCTGCTGGGACT : CCGGAATGGATGGCACCTGAAGTTCTTCGTGATGAACCATCAAATGAGAAATCTGATGTATACAGCTTTGGTGTTATTTTGTGGGAGCTGGCAACGTTGCAACAGCCTTGGAGTAATTTGAACCCAGCACAG : GTTGTAGCAGCTGTGAGCTTTAAGGGGAAAAGACTCGACATTCCACGTGACTTGACTCCTCAAGTGGCAAGCATTATAGAGGCTTGCTGGGCCAA : AGAACCATGGAAACGTCCCTCCTTTGCTGCAATCATGGATATGCTGAGACCACTAATTAAACCTCCTGTAACACCTCCTCAACCAGGCCGTACAGACACGCAGTTGATTGCGTGAATGCGTGTAATAGATGTATGATTTCTGCACATATTTGGCATTCTTTGTTAATCATCTTCTGGGAGGAACAAATCTTTGTTTACTTCAG : GCTTTTGTTCCGTACATATTAGTTCAGAATGCCCGTCTAGAGCCATTTTTTTTCTTCACAAATTCAAGCAGCCATTTCTCCCAGAAGAGCATTTGCAATTGACTTGTACGTTTCCTCGTGGAAATAATGTCTAGCCATATGATTTTGTTAATGTAAGCAAATAACAGTTCTTCTATTTTCTATCAAGAAATGATTTTGTACGTACAAGAATTTATAATGGGAATGCACAGTTCGTATCACGTCTTT</gDNA_template>
            <first_frame> K  L  I  N  E  S  N  *  Y  T  H  T  F  L  T  Y  L  Y  I  *  *  N  I  R  C  A  F  K  S  S  A  Y  C  S  Y  E  L  K  S  V  K  S  H  K  F  I  I  S  K  S  *  F  F  S  L  *  A  F  L  D  *  S  E  T  E  E  S  E  A  K  W  V  V  R  V  I  L  E  I  I  *  G  I  I  *  N  M  I  K  V  E  G  S  L  I  *  L  S  *  T  Y  N  L  K  S  K  I  P  G  I  L  R  L  K  Q  D  F  P  H  L  F  F  L  S  L  L  I  R  Q  V  R  R  R  R  R  K  E  R  K  L  L  V  R  E  S  L  *  E  R  E  G  V  E  A  I  V  *  *  T  I  S  S  *  G  F  V  E  L  I  N  Y  *  D  G  N  V  Y  *  T  I  E  L  Y  F  V  E  S  S  C  R  *  Q  L  P  S  S  A  T  E  V  L  R  H  W  R  W  R  W  R  W  R  S  S  T  V  L  *  V  S  F  W  *  K  G  *  R  Q  N  R  *  *  *  R  I  *  L  G  F  E  *  S  P  *  *  Y  D  A  S  V  E  S  D  R  C  G  G  I  S  R  F  D  W  L  A  E  A  I  K  W  E  Q  L  W  *  K  F  D  L  R  G  V  L  H  A  V  V  V  *  C  G  G  V  I  W  I  S  Q  *  W  R  W  R  C  *  S  E  D  E  A  V  G  S  *  F  V  R  W  L  V  F  *  E  L  G  A  A  D  *  G  E  L  S  A  A  V  S  F  G  F  T  A  F  F  R  S  Y  L  C  *  *  S  K  F  F  G  S  C  A  *  *  I  R  I  P  C  F  S  F  S  C  F  G  G  D  P  F  P  S  I  L   : G  K  W  M  L  V  V  L  *  Q  S  A  *  W  I  L  L  D  P  W  D  G  S  I  C  L  D  C  L  L  R  S  T  R  K  C  P  G  S  I  Y  *  I  N  E  S  C  *  S  L  C  S  T  I  S  *  S  D  F  D  *  S  A  Y  G  S  K  L  E  R  T  A  E  S  D  P  *  S  L  S  Y  L  W  H  N  K  R  S  C  *  S  A  C  S  A  G  L  Q  S  Y  G  :  G  R  N  F  C  R  R  R  *  V  G  S  F  V  E  G  V  *  L  *  A  E  G  L  S  R  I  H  C  A  S  H  W  *  P  V  C  W  P  L  Q  A  S  S  F  A  I  *   : S  S  S  *  R  H  W  F  T  M  S  N  C  Q  R  M  *  I  L  *  Q  S  *  C  F  L  M  F  S  S  F  W  T  *  Q  :  G  V  P  G  *  F  D  W  E  P  W  M  L  M  R  T  R  F  L  A  Q  R  P  I  F  Y  L  N  L  F  T  I  A  I  S  E  I  Q  R  S  *  T  D  N  *  F  Q  V  T  C  Q  T  V  F  L  G  L  S  I  A  *  S  C  V  *  G  I  F  S  R :   S  C  C  *  W  R  R  R  T  N  *  P  K  *  H  *  E  K  Q  C  C  H  W  S  K  *  P  *  *  S  F  S  V  T  C  A  C  N  *  :  G  H  G  S  C  E  V  C  P  S  S  F  A  W  R  Y  T  I  I  R  P  K  R  Y  R  E  *  Y  A  I  S  *  E  R  K  S  T  C  S  L  *  N  K  *  R  H  C  P  *  N  R  R  F  *  Y  T  L  G  R  S  C  S  E  G  E  D  W  G  R :   V  F  W  Y  C  S  P  C  *  L  E  W  F   : *  C  C  C  E  D  T  H  G  T  R  F  S  C  R  A  I  Q  G  I  F  A  G   : G  C  N  Y  E  A  V  A  T  P  K  Y  C  A  F  Y  G  C  S  Y  S  A  T  K  L  V  H  S  Y  R  I  F  I  K  :  R  *  L  I  *  T  S  S  *  T  W  C  *  G  G  F  G  *  K  V  S  V  V  Y  G  I  *  C   : G  K  G  D  E  L  S  T  *  T  Q  S  S  H  R  S  *  R  F  E  I  S  K  S  F  S  G  Q  K  I  H  S  E   : G  L  *  F  W  P  F  S  F  K  S  E  H  I  S  L  V  K  V  C  C  W  D   : S  G  M  D  G  T  *  S  S  S  *  *  T  I  K  *  E  I  *  C  I  Q  L  W  C  Y  F  V  G  A  G  N  V  A  T  A  L  E  *  F  E  P  S  T   : G  C  S  S  C  E  L  *  G  E  K  T  R  H  S  T  *  L  D  S  S  S  G  K  H  Y  R  G  L  L  G  Q  :  R  T  M  E  T  S  L  L  C  C  N  H  G  Y  A  E  T  T  N  *  T  S  C  N  T  S  S  T  R  P  Y  R  H  A  V  D  C  V  N  A  C  N  R  C  M  I  S  A  H  I  W  H  S  L  L  I  I  F  W  E  E  Q  I  F  V  Y  F  R :   L  L  F  R  T  Y  *  F  R  M  P  V  *  S  H  F  F  S  S  Q  I  Q  A  A  I  S  P  R  R  A  F  A  I  D  L  Y  V  S  S  W  K  *  C  L  A  I  *  F  C  *  C  K  Q  I  T  V  L  L  F  S  I  K  K  *  F  C  T  Y  K  N  L  *  W  E  C  T  V  R  I  T  S   </first_frame>
            <second_frame>  S  L  *  T  N  Q  I  N  I  H  I  L  F  *  H  I  Y  T  F  N  K  I  S  D  V  L  L  S  Q  V  L  T  V  L  M  N  S  N  Q  S  K  V  I  S  L  S  S  L  S  R  N  F  S  A  Y  K  H  F  W  I  D  R  K  R  K  K  V  R  P  N  G  L  *  E  *  Y  L  K  L  Y  R  E  S  F  E  I  *  *  K  *  R  G  V  *  Y  N  *  V  K  L  I  T  *  S  R  K  F  Q  E  Y  Y  D  *  N  K  T  S  P  I  F  F  F  S  H  F  S  F  D  K  Y  E  E  E  E  E  K  R  E  N  F  *  *  E  K  V  F  E  R  E  R  E  L  K  L  *  C  N  E  Q  F  L  A  R  V  L  L  N  *  *  I  I  E  M  E  M  S  T  R  R  S  N  Y  T  L  L  S  Q  V  A  D  D  N  Y  L  P  P  P  P  K  Y  S  V  T  G  G  G  G  G  G  G  G  V  A  P  Y  Y  E  S  H  S  G  E  K  G  K  G  K  T  G  D  N  R  G  F  D  W  D  L  S  D  H  R  S  N  M  M  Q  A  S  N  R  I  G  A  A  A  F  P  G  S  I  G  L  Q  R  Q  S  S  G  S  S  F  G  E  S  S  I  S  G  E  Y  Y  M  P  S  L  S  N  A  E  A  S  F  G  Y  L  N  D  G  G  G  G  A  E  V  R  M  K  P  L  E  A  N  L  F  G  G  S  S  S  K  S  W  A  Q  Q  T  E  E  S  Y  Q  L  Q  L  A  L  A  L  R  L  S  S  E  A  T  C  A  D  D  P  N  F  L  D  H  V  P  D  E  S  A  S  R  A  S  A  S  A  A  S  A  E  T  L  S  H  R  F  W  :  V  N  G  C  L  S  Y  F  D  K  V  P  D  G  F  Y  L  I  H  G  M  D  P  Y  V  W  I  V  C  S  D  L  Q  E  N  A  R  V  P  S  I  E  S  M  R  A  V  D  P  S  V  V  P  S  V  E  V  I  L  I  D  R  R  T  D  P  S  L  K  E  L  Q  N  R  I  H  S  L  S  P  T  C  G  T  T  K  E  V  V  D  Q  L  A  Q  L  V  C  S  H  M  G :   G  A  T  S  A  G  E  D  E  L  V  P  L  W  K  E  C  S  Y  E  L  K  D  C  L  G  S  T  V  L  P  I  G  S  L  S  V  G  L  C  R  H  R  A  L  L  F  K  :  V  L  A  D  A  I  G  L  P  C  R  I  A  K  G  C  K  Y  C  N  R  A  D  A  S  S  C  L  V  R  F  G  P  D  R :   E  Y  L  V  D  L  I  G  S  P  G  C  L  C  E  P  D  S  S  L  N  G  P  S  S  I  S  I  S  S  P  L  R  F  P  R  F  R  E  V  E  P  T  T  D  F  R  S  L  A  K  Q  Y  F  S  D  C  Q  S  L  N  L  V  F  E  E  S  S  A   : G  A  A  V  D  G  D  A  G  Q  T  D  R  N  N  I  E  R  N  S  A  V  T  G  P  S  N  R  D  E  V  S  R  L  P  V  P  A  I  R :   D  M  A  P  V  K  Y  V  R  P  V  L  H  G  D  T  Q  L  S  D  P  R  D  I  G  N  D  M  R  F  L  E  R  G  S  Q  L  V  P  S  K  I  S  R  D  I  A  L  E  I  E  D  F  D  I  P  W  E  D  L  V  L  K  E  R  I  G  A   : G  S  F  G  T  V  H  R  A  D  W  N  G  S  :  D  V  A  V  K  I  L  M  E  Q  D  F  H  A  E  R  F  K  E  F  L  R  E  :  V  A  I  M  K  R  L  R  H  P  N  I  V  L  F  M  G  A  V  T  Q  R  P  N  L  S  I  V  T  E  Y  L  S  R :   G  S  L  Y  R  L  L  H  K  P  G  A  R  E  V  L  D  E  R  C  R  L  S  M  A  Y  D  V  :  A  K  G  M  N  Y  L  H  K  R  N  P  P  I  V  H  R  D  L  K  S  P  N  L  L  V  D  K  K  Y  T  V  K  :  V  C  D  F  G  L  S  R  L  K  A  N  T  F  L  S  S  K  S  A  A  G  T  :  P  E  W  M  A  P  E  V  L  R  D  E  P  S  N  E  K  S  D  V  Y  S  F  G  V  I  L  W  E  L  A  T  L  Q  Q  P  W  S  N  L  N  P  A  Q  :  V  V  A  A  V  S  F  K  G  K  R  L  D  I  P  R  D  L  T  P  Q  V  A  S  I  I  E  A  C  W  A  K :   E  P  W  K  R  P  S  F  A  A  I  M  D  M  L  R  P  L  I  K  P  P  V  T  P  P  Q  P  G  R  T  D  T  Q  L  I  A  *  M  R  V  I  D  V  *  F  L  H  I  F  G  I  L  C  *  S  S  S  G  R  N  K  S  L  F  T  S   : G  F  C  S  V  H  I  S  S  E  C  P  S  R  A  I  F  F  L  H  K  F  K  Q  P  F  L  P  E  E  H  L  Q  L  T  C  T  F  P  R  G  N  N  V  *  P  Y  D  F  V  N  V  S  K  *  Q  F  F  Y  F  L  S  R  N  D  F  V  R  T  R  I  Y  N  G  N  A  Q  F  V  S  R  L  </second_frame>
            <third_frame>   A  Y  K  R  I  K  L  I  Y  T  Y  F  S  D  I  F  I  H  L  I  K  Y  P  M  C  F  *  V  K  C  L  L  F  L  *  T  Q  I  S  Q  K  S  *  V  Y  H  L  *  V  V  I  F  Q  L  I  S  I  F  G  L  I  G  N  G  R  K  *  G  Q  M  G  C  K  S  N  T  *  N  Y  I  G  N  H  L  K  Y  D  K  S  R  G  E  F  N  I  I  K  L  N  L  *  L  K  V  E  N  S  R  N  I  T  T  K  T  R  L  P  P  S  F  F  S  L  T  S  H  S  T  S  T  K  K  K  K  K  R  E  K  T  F  S  E  R  K  S  L  R  E  R  G  S  *  S  Y  S  V  M  N  N  F  *  L  G  F  C  *  I  D  K  L  L  R  W  K  C  L  L  D  D  R  I  I  L  C  *  V  K  L  Q  M  T  I  T  F  L  R  H  R  S  T  P  S  L  A  V  A  V  E  V  E  E  *  H  R  I  M  S  L  I  L  V  K  R  V  K  A  K  Q  V  I  I  E  D  L  I  G  I  *  V  I  T  V  V  I  *  C  K  R  R  I  G  S  V  R  R  H  F  Q  V  R  L  A  C  R  G  N  Q  V  G  A  A  L  V  K  V  R  S  P  G  S  I  T  C  R  R  C  L  M  R  R  R  H  L  D  I  S  M  M  A  V  A  V  L  K  *  G  *  S  R  W  K  L  I  C  S  V  A  R  L  L  R  A  G  R  S  R  L  R  R  V  I  S  C  S  *  L  W  L  Y  G  F  L  P  K  L  P  V  L  M  I  Q  I  F  W  I  M  C  L  M  N  P  H  P  V  L  Q  L  Q  L  L  R  R  R  P  F  P  I  D  S  G :   *  M  D  A  C  R  T  L  T  K  C  L  M  D  F  T  *  S  M  G  W  I  H  M  S  G  L  S  A  Q  I  Y  K  K  M  P  G  F  H  L  L  N  Q  *  E  L  L  I  P  L  *  Y  H  Q  L  K  *  F  *  L  I  G  V  R  I  Q  A  *  K  N  C  R  I  G  S  I  V  S  L  L  L  V  A  Q  Q  K  K  L  L  I  S  L  L  S  W  S  A  V  I  W   : G  A  Q  L  L  P  E  K  M  S  W  F  L  C  G  R  S  V  V  M  S  *  R  I  V  *  D  P  L  C  F  P  L  V  A  C  L  L  A  F  A  G  I  E  L  C  Y  L  K :   F  *  L  T  P  L  V  Y  H  V  E  L  P  K  D  V  N  I  V  T  E  L  M  L  P  H  V  *  F  V  L  D  L  T   : G  S  T  W  L  I  *  L  G  A  L  D  A  Y  A  N  Q  I  P  R  S  T  A  H  L  L  S  Q  S  L  H  H  C  D  F  R  D  S  E  K  L  N  R  Q  L  I  S  G  H  L  P  N  S  I  S  R  I  V  N  R  L  I  L  C  L  R  N  L  Q  Q  :  E  L  L  L  M  E  T  Q  D  K  L  T  E  I  T  L  R  E  T  V  L  S  L  V  Q  V  T  V  M  K  F  L  G  Y  L  C  L  Q  L   : G  T  W  L  L  *  S  M  S  V  Q  F  C  M  E  I  H  N  Y  Q  T  Q  E  I  *  G  M  I  C  D  F  L  R  E  E  V  N  L  F  P  L  K  *  V  E  T  L  P  L  K  *  K  I  L  I  Y  P  G  K  I  L  F  *  R  R  G  L  G  Q  :  G  L  L  V  L  F  T  V  L  I  G  M  V  L :   M  L  L  *  R  Y  S  W  N  K  I  F  M  Q  S  D  S  R  N  F  C  G  R :   L  Q  L  *  S  G  C  D  T  Q  I  L  C  F  L  W  V  Q  L  L  S  D  Q  T  C  P  *  L  Q  N  I  Y  Q   : E  V  A  Y  I  D  F  F  I  N  L  V  L  G  R  F  W  M  K  G  V  G  C  L  W  H  M  M  W :   Q  R  G  *  I  I  Y  I  N  A  I  L  P  S  F  I  E  I  *  N  L  Q  I  F  *  W  T  K  N  T  Q  *  R :   S  V  I  L  A  F  L  V  *  K  R  T  H  F  S  R  Q  S  L  L  L  G  L :   R  N  G  W  H  L  K  F  F  V  M  N  H  Q  M  R  N  L  M  Y  T  A  L  V  L  F  C  G  S  W  Q  R  C  N  S  L  G  V  I  *  T  Q  H  R :   L  *  Q  L  *  A  L  R  G  K  D  S  T  F  H  V  T  *  L  L  K  W  Q  A  L  *  R  L  A  G  P   : K  N  H  G  N  V  P  P  L  L  Q  S  W  I  C  *  D  H  *  L  N  L  L  *  H  L  L  N  Q  A  V  Q  T  R  S  *  L  R  E  C  V  *  *  M  Y  D  F  C  T  Y  L  A  F  F  V  N  H  L  L  G  G  T  N  L  C  L  L  Q  :  A  F  V  P  Y  I  L  V  Q  N  A  R  L  E  P  F  F  F  F  T  N  S  S  S  H  F  S  Q  K  S  I  C  N  *  L  V  R  F  L  V  E  I  M  S  S  H  M  I  L  L  M  *  A  N  N  S  S  S  I  F  Y  Q  E  M  I  L  Y  V  Q  E  F  I  M  G  M  H  S  S  Y  H  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53238" stop="53870"/>
                    <exon start="59632" stop="59933"/>
                    <exon start="60021" stop="60165"/>
                    <exon start="60419" stop="60522"/>
                    <exon start="61786" stop="61994"/>
                    <exon start="64000" stop="64117"/>
                    <exon start="64206" stop="64411"/>
                    <exon start="64552" stop="64592"/>
                    <exon start="64888" stop="64956"/>
                    <exon start="65100" stop="65200"/>
                    <exon start="65284" stop="65368"/>
                    <exon start="65443" stop="65541"/>
                    <exon start="66364" stop="66432"/>
                    <exon start="66532" stop="66663"/>
                    <exon start="67434" stop="67528"/>
                    <exon start="67617" stop="67731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2520</number_coding_nucleotides>
                  <number_encoded_amino_acids>840</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIEMEMSTRRSNYTLLSQVADDNYLPPPPKYSVTGGGGGGGGVAPYYESHSGEKGKGKTGDNRGFDWDLSDHRSNMMQASNRIGAAAFPGSIGLQRQSSGSSFGESSISGEYYMPSLSNAEASFGYLNDGGGGAEVRMKPLEANLFGGSSSKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDHVPDESASRASASAASAETLSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWIVCSDLQENARVPSIESMRAVDPSVVPSVEVILIDRRTDPSLKELQNRIHSLSPTCGTTKEVVDQLAQLVCSHMGGATSAGEDELVPLWKECSYELKDCLGSTVLPIGSLSVGLCRHRALLFKVLADAIGLPCRIAKGCKYCNRADASSCLVRFGPDREYLVDLIGSPGCLCEPDSSLNGPSSISISSPLRFPRFREVEPTTDFRSLAKQYFSDCQSLNLVFEESSAGAAVDGDAGQTDRNNIERNSAVTGPSNRDEVSRLPVPAIRDMAPVKYVRPVLHGDTQLSDPRDIGNDMRFLERGSQLVPSKISRDIALEIEDFDIPWEDLVLKERIGAGSFGTVHRADWNGSDVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLFMGAVTQRPNLSIVTEYLSRGSLYRLLHKPGAREVLDERCRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWSNLNPAQVVAAVSFKGKRLDIPRDLTPQVASIIEACWAKEPWKRPSFAAIMDMLRPLIKPPVTPPQPGRTDTQLIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="73769" PGL_stop="68833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73769" e_stop="72470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="73769" e_stop="72470" e_length="1300"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73769" stop="73231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73730" stop="73157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73730" stop="73174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73730" stop="73276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73571" stop="72752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73537" stop="73013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73495" stop="72852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73274" stop="72635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73232" stop="72470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315254" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGGAGCTTCAGGAGAAAAACTCCACCGACTTTACAGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATATGTGGGTATTAATTTTAGCACACTGGCCAACTTTTTCTGGCTAATGTGTTAAATCTCTAGTTCTCTAACTCTGTCTCTCTTTTTAATGATATTTTTTCCTTGTATGTAATTTCTGTTGTAGTTTTTCATGTATCTTTATTTTTTCCCTCATTTTTCTGTAGTTTGTTTGCTCTTTTGTTGTTGATATACTGTAAAGATAATGTCTTAGGATGTAAATGTAAATAGATTTTTCGCGTTGTAAACAGTATAGGCTCCTGCGATTGTAAATGAGAGTTGGAGAACTGTTTTTTCTTCTTGATAGTTCAATGTTTTTGGCATCTTGTGTAAATGATGTCATTGAGATCTTTAGTGGATAGTAAAATGGTGGGTTCTTAAGTAAAATGGTAAAGAGGTGCGCTGTTCGTGATGTGGGCTTGTAGATAAAGCTCCCTGCATTGATGCATCTGCTGAGTTTGGGAGGTTCATCTATTGCTGCAGGTAGAATTCAAAGGTTCTGATTAAACAGAGTGTTTAAGCTTTGTAGTTTATATATGGTCTAACTTCAAAAGATCTACTAATTGTGTATTTCTAGTGTAATGCAGCTCCTGGAACTCATGAAAATTTGACAGTTAGCATCTTGCT</gDNA_template>
            <first_frame> *  N  G  A  S  G  E  K  L  H  R  L  Y  R  V  V  Y  R  R  Y  F  L  V  C  M  S  A  L  P  I  *  T  S  L  Q  P  L  L  P  T  F  Y  L  S  P  L  S  K  F  *  I  F  *  S  Q  K  L  L  K  F  Q  S  L  I  H  K  N  H  K  S  L  C  M  I  *  T  H  L  I  K  N  K  N  L  I  L  I  Q  K  P  H  F  *  L  K  W  T  L  N  L  L  R  F  H  Q  F  H  S  L  L  L  T  H  L  L  L  L  S  I  L  D  L  L  P  L  L  *  A  N  I  Q  L  E  K  G  K  E  K  E  K  G  E  K  L  N  S  Q  L  R  E  D  W  V  C  R  S  L  W  S  V  Y  M  G  Y  K  F  R  H  F  C  Q  R  L  L  I  W  L  R  T  L  Y  W  I  R  L  F  L  G  V  E  M  E  K  A  L  *  F  G  I  Q  W  S  F  Q  D  W  F  F  L  G  I  S  S  T  V  I  S  P  A  L  F  D  S  L  I  H  M  W  V  L  I  L  A  H  W  P  T  F  S  G  *  C  V  K  S  L  V  L  *  L  C  L  S  F  *  *  Y  F  F  L  V  C  N  F  C  C  S  F  S  C  I  F  I  F  S  L  I  F  L  *  F  V  C  S  F  V  V  D  I  L  *  R  *  C  L  R  M  *  M  *  I  D  F  S  R  C  K  Q  Y  R  L  L  R  L  *  M  R  V  G  E  L  F  F  L  L  D  S  S  M  F  L  A  S  C  V  N  D  V  I  E  I  F  S  G  *  *  N  G  G  F  L  S  K  M  V  K  R  C  A  V  R  D  V  G  L  *  I  K  L  P  A  L  M  H  L  L  S  L  G  G  S  S  I  A  A  G  R  I  Q  R  F  *  L  N  R  V  F  K  L  C  S  L  Y  M  V  *  L  Q  K  I  Y  *  L  C  I  S  S  V  M  Q  L  L  E  L  M  K  I  *  Q  L  A  S  C  </first_frame>
            <second_frame>  K  M  E  L  Q  E  K  N  S  T  D  F  T  E  L  F  T  G  D  I  S  W  F  V  C  R  R  Y  L  Y  K  P  P  F  N  P  F  Y  R  L  F  I  Y  H  P  Y  R  N  F  E  S  F  D  H  K  N  Y  *  S  F  N  L  *  S  I  K  T  T  N  L  F  V  *  Y  E  P  I  *  *  K  T  R  I  *  Y  *  Y  K  N  P  I  F  D  *  N  G  L  *  I  C  C  V  F  T  N  F  T  P  F  C  *  P  I  F  S  F  Y  Q  F  W  I  F  C  H  S  F  E  P  T  S  S  W  R  R  G  R  R  R  R  R  G  R  N  *  T  A  S  *  G  R  I  G  C  A  A  A  Y  G  V  F  T  W  D  T  N  S  A  I  F  V  K  D  F  *  F  G  *  G  P  F  I  G  Y  D  Y  F  L  G  *  K  W  R  K  L  C  S  L  G  S  S  G  V  F  K  I  G  S  S  *  E  F  Q  A  Q  *  F  L  Q  L  C  S  T  A  *  Y  I  C  G  Y  *  F  *  H  T  G  Q  L  F  L  A  N  V  L  N  L  *  F  S  N  S  V  S  L  F  N  D  I  F  S  L  Y  V  I  S  V  V  V  F  H  V  S  L  F  F  P  S  F  F  C  S  L  F  A  L  L  L  L  I  Y  C  K  D  N  V  L  G  C  K  C  K  *  I  F  R  V  V  N  S  I  G  S  C  D  C  K  *  E  L  E  N  C  F  F  F  L  I  V  Q  C  F  W  H  L  V  *  M  M  S  L  R  S  L  V  D  S  K  M  V  G  S  *  V  K  W  *  R  G  A  L  F  V  M  W  A  C  R  *  S  S  L  H  *  C  I  C  *  V  W  E  V  H  L  L  L  Q  V  E  F  K  G  S  D  *  T  E  C  L  S  F  V  V  Y  I  W  S  N  F  K  R  S  T  N  C  V  F  L  V  *  C  S  S  W  N  S  *  K  F  D  S  *  H  L  A </second_frame>
            <third_frame>   K  W  S  F  R  R  K  T  P  P  T  L  Q  S  C  L  Q  E  I  F  L  G  L  Y  V  G  V  T  Y  I  N  L  P  S  T  P  F  T  D  F  L  S  I  T  L  I  E  I  L  N  L  L  I  T  K  T  I  K  V  S  I  F  D  P  *  K  P  Q  I  S  L  Y  D  M  N  P  F  D  K  K  Q  E  S  D  T  D  T  K  T  P  F  L  T  E  M  D  S  E  F  A  A  F  S  P  I  S  L  P  F  A  D  P  S  S  P  F  I  N  F  G  S  F  A  T  P  L  S  Q  H  P  V  G  E  G  E  G  E  G  E  G  G  E  I  E  Q  P  A  E  G  G  L  G  V  P  Q  P  M  E  C  L  H  G  I  Q  I  P  P  F  L  S  K  T  F  D  L  V  E  D  P  L  L  D  T  I  I  S  W  G  R  N  G  E  S  F  V  V  W  D  P  V  E  F  S  R  L  V  L  P  R  N  F  K  H  S  N  F  S  S  F  V  R  Q  L  N  T  Y  V  G  I  N  F  S  T  L  A  N  F  F  W  L  M  C  *  I  S  S  S  L  T  L  S  L  F  L  M  I  F  F  P  C  M  *  F  L  L  *  F  F  M  Y  L  Y  F  F  P  H  F  S  V  V  C  L  L  F  C  C  *  Y  T  V  K  I  M  S  *  D  V  N  V  N  R  F  F  A  L  *  T  V  *  A  P  A  I  V  N  E  S  W  R  T  V  F  S  S  *  *  F  N  V  F  G  I  L  C  K  *  C  H  *  D  L  *  W  I  V  K  W  W  V  L  K  *  N  G  K  E  V  R  C  S  *  C  G  L  V  D  K  A  P  C  I  D  A  S  A  E  F  G  R  F  I  Y  C  C  R  *  N  S  K  V  L  I  K  Q  S  V  *  A  L  *  F  I  Y  G  L  T  S  K  D  L  L  I  V  Y  F  *  C  N  A  A  P  G  T  H  E  N  L  T  V  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73572" stop="73039"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPQISLYDMNPFDKKQESDTDTKTPFLTEMDSEFAAFSPISLPFADPSSPFINFGSFATPLSQHPVGEGEGEGEGGEIEQPAEGGLGVPQPMECLHGIQIPPFLSKTFDLVEDPLLDTIISWGRNGESFVVWDPVEFSRLVLPRNFKHSNFSSFVRQLNTYVGINFSTLANFFWLMC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73767" stop="73573"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWSFRRKTPPTLQSCLQEIFLGLYVGVTYINLPSTPFTDFLSITLIEILNLLITKTIKVSIFDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72215" e_stop="70965"/>
            <exon e_start="69424" e_stop="68833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72215" e_stop="70965" e_length="1251"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="70964" i_stop="69425" i_length="1540"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69424" e_stop="68833" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72215" stop="71379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71741" stop="71102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71741" stop="71227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71741" stop="71230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71741" stop="71331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71741" stop="71449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71102" stop="70965"/>
              <exon start="69424" stop="68833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577615" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71075" stop="70965"/>
              <exon start="69424" stop="68841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375909" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71006" stop="70965"/>
              <exon start="69424" stop="68841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249319" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATGGATGAGATAGAGAAACTCAGGAATGAGAAGAGTTTGATGATGCAGGAAGTTGTTGAGTTGCAGCAGCAGCAGCGTGGAACAGTTCAACAAATGGAATCCGTTAATGAAAAGCTTCAGGCTGCAGAACAAAGACAGAAGCAGATGGTTTCATTCTTGGCCAAGGTGCTTCAAAATCCCACATTCTTGGCTCGTGTTCGGCAGATGAAGGAGCAAGGAGAAATTACTAGTCCAAGAACAATGAGGAAATTTGTTAAACATCAGTCACATGGTCCGGATGGAGTGGGGTCGTCTTCAATGGAAGGGCAGATAGTCAAGTTCAGGTCTGACTTTCAAGACCTTGCAGGATGCTTTGACAGCCCAGATTTCAATACAGTTGTGGATCAACAACTCCCAGAAATTGGTTTAGGAGCGGAAGCCATGCCTTTTGAAGGTGTTCCTGTTGCTGATGAACTGACAGTGGCACATGAACTTCTTAATTGTTCAGATCGGGAAATACGAGGAGCTTCATTCTTTAACTCCGAAGGCTCTCAATTCAAAGGGAAGAATGTAGCTAGTCCTCAAATAGAAGTTATGCCCGAGTACTTTGCCTCTTTTCCAGAGGAGATGGGGAAGGAGAAGAACGTTTCAGGATTTTCCACACCAGCTATTGGAAGTATGGTGAAAGATGAGGAACTTTGGGGTATGGGTTTTGAAGCCAGTGCTGGCATGCCAAGCACTGGTGCCGAGTTATGGGATAGTCGTAGCAGCTATGTTCCAGACTTTGGTGTTAGCTCTGGTTTGTCAGATTTATGGGATATAGATCCCTTGCAGGTAGCTGGAAGTTCTGGGGTCGATAAGTGGCCAGCTGATGGGTCTCCTTTTGGTCAGTCTGGAAGTCATGCAAACCAGCCCAAGAATGATAGTTTCTAGGAAAGAGTACCCTTGGGCCTTCAGTGTGCCATTGGGATACTGCCATCATTTAGTTGATGGGACATAATATTGAATGAGTGATTATAAATATTTTAGTTGATAATTACTTTTGACTGGTTCTTTTCTTCTATTCCCTCTCCTTGGTCTGCTATTTCTCCGCTAATTGTGCTGGACTGTGAATATTTGATGGCATAAATTGTAGATATTTCCTGCTAACATATACTCTTTTAAGTTGTGAAATACGCAGGTTTGCAGCACTGAAGGCGAGTATGGGACTTCTTTAGAGAATTTCGGACTTGAATGAGTGAATGACATTGCTCGCTCAAGCTTTTTCCAG : TCGATTCTTCTGTAATTGCTTGCTTGGATCTTGTACCCTCGCCTAGGCAAAGCAATGATGTACATCAGAAACAGCTGGCGAAGTCCTTCTCAGGGCTTAGCTCAGGTGGCAAAGGTCGAGGGAAGTTCAAGCCTTGCATCATGCGAACTAAGCCTGATATTTAAGTGGACATTGTGTTTGGTTCCAAGGGTTGGGCCAGACTGATTTCTTGGTTATCAAGAAAAAGATCCTGCTCAGCTATTCGGTTCCCCTTAGCTTATTTGTATATATCTAAATGTGTAGGATGTTCATCAGGGGCAATCTGATTATTGTTGTGTCAATGTAATAATTGATAGGTTATCCTGGCAAACCATTTGAGAAGTATCTGTACTGTGATATTGATAGGGGGAAGAAATGGTCATCAGAAAGGTGATTAGACATGACAAACTTATAGCTTACCATGGATATGATTCCTAAATAAGAGGATATTGGGGTTGATCATTAGGGTAGAACATTAGTAAGTAGTCCAACATTGTTTAGTTTCCTTATTATTGTTCTCCTAGTTTCGTATTCTGCAATTTTAGTATTATCTGTTGTTCCTTTTTATTTTTGT</gDNA_template>
            <first_frame> L  W  M  R  *  R  N  S  G  M  R  R  V  *  *  C  R  K  L  L  S  C  S  S  S  S  V  E  Q  F  N  K  W  N  P  L  M  K  S  F  R  L  Q  N  K  D  R  S  R  W  F  H  S  W  P  R  C  F  K  I  P  H  S  W  L  V  F  G  R  *  R  S  K  E  K  L  L  V  Q  E  Q  *  G  N  L  L  N  I  S  H  M  V  R  M  E  W  G  R  L  Q  W  K  G  R  *  S  S  S  G  L  T  F  K  T  L  Q  D  A  L  T  A  Q  I  S  I  Q  L  W  I  N  N  S  Q  K  L  V  *  E  R  K  P  C  L  L  K  V  F  L  L  L  M  N  *  Q  W  H  M  N  F  L  I  V  Q  I  G  K  Y  E  E  L  H  S  L  T  P  K  A  L  N  S  K  G  R  M  *  L  V  L  K  *  K  L  C  P  S  T  L  P  L  F  Q  R  R  W  G  R  R  R  T  F  Q  D  F  P  H  Q  L  L  E  V  W  *  K  M  R  N  F  G  V  W  V  L  K  P  V  L  A  C  Q  A  L  V  P  S  Y  G  I  V  V  A  A  M  F  Q  T  L  V  L  A  L  V  C  Q  I  Y  G  I  *  I  P  C  R  *  L  E  V  L  G  S  I  S  G  Q  L  M  G  L  L  L  V  S  L  E  V  M  Q  T  S  P  R  M  I  V  S  R  K  E  Y  P  W  A  F  S  V  P  L  G  Y  C  H  H  L  V  D  G  T  *  Y  *  M  S  D  Y  K  Y  F  S  *  *  L  L  L  T  G  S  F  L  L  F  P  L  L  G  L  L  F  L  R  *  L  C  W  T  V  N  I  *  W  H  K  L  *  I  F  P  A  N  I  Y  S  F  K  L  *  N  T  Q  V  C  S  T  E  G  E  Y  G  T  S  L  E  N  F  G  L  E  *  V  N  D  I  A  R  S  S  F  F  Q  :  S  I  L  L  *  L  L  A  W  I  L  Y  P  R  L  G  K  A  M  M  Y  I  R  N  S  W  R  S  P  S  Q  G  L  A  Q  V  A  K  V  E  G  S  S  S  L  A  S  C  E  L  S  L  I  F  K  W  T  L  C  L  V  P  R  V  G  P  D  *  F  L  G  Y  Q  E  K  D  P  A  Q  L  F  G  S  P  *  L  I  C  I  Y  L  N  V  *  D  V  H  Q  G  Q  S  D  Y  C  C  V  N  V  I  I  D  R  L  S  W  Q  T  I  *  E  V  S  V  L  *  Y  *  *  G  E  E  M  V  I  R  K  V  I  R  H  D  K  L  I  A  Y  H  G  Y  D  S  *  I  R  G  Y  W  G  *  S  L  G  *  N  I  S  K  *  S  N  I  V  *  F  P  Y  Y  C  S  P  S  F  V  F  C  N  F  S  I  I  C  C  S  F  L  F  L  </first_frame>
            <second_frame>  Y  G  *  D  R  E  T  Q  E  *  E  E  F  D  D  A  G  S  C  *  V  A  A  A  A  A  W  N  S  S  T  N  G  I  R  *  *  K  A  S  G  C  R  T  K  T  E  A  D  G  F  I  L  G  Q  G  A  S  K  S  H  I  L  G  S  C  S  A  D  E  G  A  R  R  N  Y  *  S  K  N  N  E  E  I  C  *  T  S  V  T  W  S  G  W  S  G  V  V  F  N  G  R  A  D  S  Q  V  Q  V  *  L  S  R  P  C  R  M  L  *  Q  P  R  F  Q  Y  S  C  G  S  T  T  P  R  N  W  F  R  S  G  S  H  A  F  *  R  C  S  C  C  *  *  T  D  S  G  T  *  T  S  *  L  F  R  S  G  N  T  R  S  F  I  L  *  L  R  R  L  S  I  Q  R  E  E  C  S  *  S  S  N  R  S  Y  A  R  V  L  C  L  F  S  R  G  D  G  E  G  E  E  R  F  R  I  F  H  T  S  Y  W  K  Y  G  E  R  *  G  T  L  G  Y  G  F  *  S  Q  C  W  H  A  K  H  W  C  R  V  M  G  *  S  *  Q  L  C  S  R  L  W  C  *  L  W  F  V  R  F  M  G  Y  R  S  L  A  G  S  W  K  F  W  G  R  *  V  A  S  *  W  V  S  F  W  S  V  W  K  S  C  K  P  A  Q  E  *  *  F  L  G  K  S  T  L  G  P  S  V  C  H  W  D  T  A  I  I  *  L  M  G  H  N  I  E  *  V  I  I  N  I  L  V  D  N  Y  F  *  L  V  L  F  F  Y  S  L  S  L  V  C  Y  F  S  A  N  C  A  G  L  *  I  F  D  G  I  N  C  R  Y  F  L  L  T  Y  T  L  L  S  C  E  I  R  R  F  A  A  L  K  A  S  M  G  L  L  *  R  I  S  D  L  N  E  *  M  T  L  L  A  Q  A  F  S  S :   R  F  F  C  N  C  L  L  G  S  C  T  L  A  *  A  K  Q  *  C  T  S  E  T  A  G  E  V  L  L  R  A  *  L  R  W  Q  R  S  R  E  V  Q  A  L  H  H  A  N  *  A  *  Y  L  S  G  H  C  V  W  F  Q  G  L  G  Q  T  D  F  L  V  I  K  K  K  I  L  L  S  Y  S  V  P  L  S  L  F  V  Y  I  *  M  C  R  M  F  I  R  G  N  L  I  I  V  V  S  M  *  *  L  I  G  Y  P  G  K  P  F  E  K  Y  L  Y  C  D  I  D  R  G  K  K  W  S  S  E  R  *  L  D  M  T  N  L  *  L  T  M  D  M  I  P  K  *  E  D  I  G  V  D  H  *  G  R  T  L  V  S  S  P  T  L  F  S  F  L  I  I  V  L  L  V  S  Y  S  A  I  L  V  L  S  V  V  P  F  Y  F  C </second_frame>
            <third_frame>   M  D  E  I  E  K  L  R  N  E  K  S  L  M  M  Q  E  V  V  E  L  Q  Q  Q  Q  R  G  T  V  Q  Q  M  E  S  V  N  E  K  L  Q  A  A  E  Q  R  Q  K  Q  M  V  S  F  L  A  K  V  L  Q  N  P  T  F  L  A  R  V  R  Q  M  K  E  Q  G  E  I  T  S  P  R  T  M  R  K  F  V  K  H  Q  S  H  G  P  D  G  V  G  S  S  S  M  E  G  Q  I  V  K  F  R  S  D  F  Q  D  L  A  G  C  F  D  S  P  D  F  N  T  V  V  D  Q  Q  L  P  E  I  G  L  G  A  E  A  M  P  F  E  G  V  P  V  A  D  E  L  T  V  A  H  E  L  L  N  C  S  D  R  E  I  R  G  A  S  F  F  N  S  E  G  S  Q  F  K  G  K  N  V  A  S  P  Q  I  E  V  M  P  E  Y  F  A  S  F  P  E  E  M  G  K  E  K  N  V  S  G  F  S  T  P  A  I  G  S  M  V  K  D  E  E  L  W  G  M  G  F  E  A  S  A  G  M  P  S  T  G  A  E  L  W  D  S  R  S  S  Y  V  P  D  F  G  V  S  S  G  L  S  D  L  W  D  I  D  P  L  Q  V  A  G  S  S  G  V  D  K  W  P  A  D  G  S  P  F  G  Q  S  G  S  H  A  N  Q  P  K  N  D  S  F  *  E  R  V  P  L  G  L  Q  C  A  I  G  I  L  P  S  F  S  *  W  D  I  I  L  N  E  *  L  *  I  F  *  L  I  I  T  F  D  W  F  F  S  S  I  P  S  P  W  S  A  I  S  P  L  I  V  L  D  C  E  Y  L  M  A  *  I  V  D  I  S  C  *  H  I  L  F  *  V  V  K  Y  A  G  L  Q  H  *  R  R  V  W  D  F  F  R  E  F  R  T  *  M  S  E  *  H  C  S  L  K  L  F  P   : V  D  S  S  V  I  A  C  L  D  L  V  P  S  P  R  Q  S  N  D  V  H  Q  K  Q  L  A  K  S  F  S  G  L  S  S  G  G  K  G  R  G  K  F  K  P  C  I  M  R  T  K  P  D  I  *  V  D  I  V  F  G  S  K  G  W  A  R  L  I  S  W  L  S  R  K  R  S  C  S  A  I  R  F  P  L  A  Y  L  Y  I  S  K  C  V  G  C  S  S  G  A  I  *  L  L  L  C  Q  C  N  N  *  *  V  I  L  A  N  H  L  R  S  I  C  T  V  I  L  I  G  G  R  N  G  H  Q  K  G  D  *  T  *  Q  T  Y  S  L  P  W  I  *  F  L  N  K  R  I  L  G  L  I  I  R  V  E  H  *  *  V  V  Q  H  C  L  V  S  L  L  L  F  S  *  F  R  I  L  Q  F  *  Y  Y  L  L  F  L  F  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72213" stop="71302"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDEIEKLRNEKSLMMQEVVELQQQQRGTVQQMESVNEKLQAAEQRQKQMVSFLAKVLQNPTFLARVRQMKEQGEITSPRTMRKFVKHQSHGPDGVGSSSMEGQIVKFRSDFQDLAGCFDSPDFNTVVDQQLPEIGLGAEAMPFEGVPVADELTVAHELLNCSDREIRGASFFNSEGSQFKGKNVASPQIEVMPEYFASFPEEMGKEKNVSGFSTPAIGSMVKDEELWGMGFEASAGMPSTGAELWDSRSSYVPDFGVSSGLSDLWDIDPLQVAGSSGVDKWPADGSPFGQSGSHANQPKNDSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="73769" e_stop="73090"/>
            <exon e_start="71054" e_stop="70965"/>
            <exon e_start="69424" e_stop="68841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73769" e_stop="73090" e_length="680"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73089" i_stop="71055" i_length="2035"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71054" e_stop="70965" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="70964" i_stop="69425" i_length="1540"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69424" e_stop="68841" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73769" stop="73231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73730" stop="73090"/>
              <exon start="71054" stop="70965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73730" stop="73157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73730" stop="73174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73730" stop="73276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71006" stop="70965"/>
              <exon start="69424" stop="68841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249319" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGGAGCTTCAGGAGAAAAACTCCACCGACTTTACAGAGTTGTTTACAGGAGATATTTCTTGGTTTGTATGTCGGCGTTACCTATATAAACCTCCCTTCAACCCCTTTTACCGACTTTTTATCTATCACCCTTATCGAAATTTTGAATCTTTTGATCACAAAAACTATTAAAGTTTCAATCTTTGATCCATAAAAACCACAAATCTCTTTGTATGATATGAACCCATTTGATAAAAAACAAGAATCTGATACTGATACAAAAACCCCATTTTTGACTGAAATGGACTCTGAATTTGCTGCGTTTTCACCAATTTCACTCCCTTTTGCTGACCCATCTTCTCCTTTTATCAATTTTGGATCTTTTGCCACTCCTTTGAGCCAACATCCAGTTGGAGAAGGGGAAGGAGAAGGAGAAGGGGGAGAAATTGAACAGCCAGCTGAGGGAGGATTGGGTGTGCCGCAGCCTATGGAGTGTTTACATGGGATACAAATTCCGCCATTTTTGTCAAAGACTTTTGATTTGGTTGAGGACCCTTTATTGGATACGATTATTTCTTGGGGTAGAAATGGAGAAAGCTTTGTAGTTTGGGATCCAGTGGAGTTTTCAAGATTGGTTCTTCCTAGGAATTTCAAGCACAGTAATTTCTCCAGCTTTGTTCGACAGCTTAATACATAT : GTTTGCAGCACTGAAGGCGAGTATGGGACTTCTTTAGAGAATTTCGGACTTGAATGAGTGAATGACATTGCTCGCTCAAGCTTTTTCCAG : TCGATTCTTCTGTAATTGCTTGCTTGGATCTTGTACCCTCGCCTAGGCAAAGCAATGATGTACATCAGAAACAGCTGGCGAAGTCCTTCTCAGGGCTTAGCTCAGGTGGCAAAGGTCGAGGGAAGTTCAAGCCTTGCATCATGCGAACTAAGCCTGATATTTAAGTGGACATTGTGTTTGGTTCCAAGGGTTGGGCCAGACTGATTTCTTGGTTATCAAGAAAAAGATCCTGCTCAGCTATTCGGTTCCCCTTAGCTTATTTGTATATATCTAAATGTGTAGGATGTTCATCAGGGGCAATCTGATTATTGTTGTGTCAATGTAATAATTGATAGGTTATCCTGGCAAACCATTTGAGAAGTATCTGTACTGTGATATTGATAGGGGGAAGAAATGGTCATCAGAAAGGTGATTAGACATGACAAACTTATAGCTTACCATGGATATGATTCCTAAATAAGAGGATATTGGGGTTGATCATTAGGGTAGAACATTAGTAAGTAGTCCAACATTGTTTAGTTTCCTTATTATTGTTCTCCTAGTTTCGTATTCTGCAATTTTAGTATTATCTGTTGTTCCTTTTT</gDNA_template>
            <first_frame> *  N  G  A  S  G  E  K  L  H  R  L  Y  R  V  V  Y  R  R  Y  F  L  V  C  M  S  A  L  P  I  *  T  S  L  Q  P  L  L  P  T  F  Y  L  S  P  L  S  K  F  *  I  F  *  S  Q  K  L  L  K  F  Q  S  L  I  H  K  N  H  K  S  L  C  M  I  *  T  H  L  I  K  N  K  N  L  I  L  I  Q  K  P  H  F  *  L  K  W  T  L  N  L  L  R  F  H  Q  F  H  S  L  L  L  T  H  L  L  L  L  S  I  L  D  L  L  P  L  L  *  A  N  I  Q  L  E  K  G  K  E  K  E  K  G  E  K  L  N  S  Q  L  R  E  D  W  V  C  R  S  L  W  S  V  Y  M  G  Y  K  F  R  H  F  C  Q  R  L  L  I  W  L  R  T  L  Y  W  I  R  L  F  L  G  V  E  M  E  K  A  L  *  F  G  I  Q  W  S  F  Q  D  W  F  F  L  G  I  S  S  T  V  I  S  P  A  L  F  D  S  L  I  H  M :   F  A  A  L  K  A  S  M  G  L  L  *  R  I  S  D  L  N  E  *  M  T  L  L  A  Q  A  F  S  S :   R  F  F  C  N  C  L  L  G  S  C  T  L  A  *  A  K  Q  *  C  T  S  E  T  A  G  E  V  L  L  R  A  *  L  R  W  Q  R  S  R  E  V  Q  A  L  H  H  A  N  *  A  *  Y  L  S  G  H  C  V  W  F  Q  G  L  G  Q  T  D  F  L  V  I  K  K  K  I  L  L  S  Y  S  V  P  L  S  L  F  V  Y  I  *  M  C  R  M  F  I  R  G  N  L  I  I  V  V  S  M  *  *  L  I  G  Y  P  G  K  P  F  E  K  Y  L  Y  C  D  I  D  R  G  K  K  W  S  S  E  R  *  L  D  M  T  N  L  *  L  T  M  D  M  I  P  K  *  E  D  I  G  V  D  H  *  G  R  T  L  V  S  S  P  T  L  F  S  F  L  I  I  V  L  L  V  S  Y  S  A  I  L  V  L  S  V  V  P  F  </first_frame>
            <second_frame>  K  M  E  L  Q  E  K  N  S  T  D  F  T  E  L  F  T  G  D  I  S  W  F  V  C  R  R  Y  L  Y  K  P  P  F  N  P  F  Y  R  L  F  I  Y  H  P  Y  R  N  F  E  S  F  D  H  K  N  Y  *  S  F  N  L  *  S  I  K  T  T  N  L  F  V  *  Y  E  P  I  *  *  K  T  R  I  *  Y  *  Y  K  N  P  I  F  D  *  N  G  L  *  I  C  C  V  F  T  N  F  T  P  F  C  *  P  I  F  S  F  Y  Q  F  W  I  F  C  H  S  F  E  P  T  S  S  W  R  R  G  R  R  R  R  R  G  R  N  *  T  A  S  *  G  R  I  G  C  A  A  A  Y  G  V  F  T  W  D  T  N  S  A  I  F  V  K  D  F  *  F  G  *  G  P  F  I  G  Y  D  Y  F  L  G  *  K  W  R  K  L  C  S  L  G  S  S  G  V  F  K  I  G  S  S  *  E  F  Q  A  Q  *  F  L  Q  L  C  S  T  A  *  Y  I   : C  L  Q  H  *  R  R  V  W  D  F  F  R  E  F  R  T  *  M  S  E  *  H  C  S  L  K  L  F  P   : V  D  S  S  V  I  A  C  L  D  L  V  P  S  P  R  Q  S  N  D  V  H  Q  K  Q  L  A  K  S  F  S  G  L  S  S  G  G  K  G  R  G  K  F  K  P  C  I  M  R  T  K  P  D  I  *  V  D  I  V  F  G  S  K  G  W  A  R  L  I  S  W  L  S  R  K  R  S  C  S  A  I  R  F  P  L  A  Y  L  Y  I  S  K  C  V  G  C  S  S  G  A  I  *  L  L  L  C  Q  C  N  N  *  *  V  I  L  A  N  H  L  R  S  I  C  T  V  I  L  I  G  G  R  N  G  H  Q  K  G  D  *  T  *  Q  T  Y  S  L  P  W  I  *  F  L  N  K  R  I  L  G  L  I  I  R  V  E  H  *  *  V  V  Q  H  C  L  V  S  L  L  L  F  S  *  F  R  I  L  Q  F  *  Y  Y  L  L  F  L  F </second_frame>
            <third_frame>   K  W  S  F  R  R  K  T  P  P  T  L  Q  S  C  L  Q  E  I  F  L  G  L  Y  V  G  V  T  Y  I  N  L  P  S  T  P  F  T  D  F  L  S  I  T  L  I  E  I  L  N  L  L  I  T  K  T  I  K  V  S  I  F  D  P  *  K  P  Q  I  S  L  Y  D  M  N  P  F  D  K  K  Q  E  S  D  T  D  T  K  T  P  F  L  T  E  M  D  S  E  F  A  A  F  S  P  I  S  L  P  F  A  D  P  S  S  P  F  I  N  F  G  S  F  A  T  P  L  S  Q  H  P  V  G  E  G  E  G  E  G  E  G  G  E  I  E  Q  P  A  E  G  G  L  G  V  P  Q  P  M  E  C  L  H  G  I  Q  I  P  P  F  L  S  K  T  F  D  L  V  E  D  P  L  L  D  T  I  I  S  W  G  R  N  G  E  S  F  V  V  W  D  P  V  E  F  S  R  L  V  L  P  R  N  F  K  H  S  N  F  S  S  F  V  R  Q  L  N  T  Y  :  V  C  S  T  E  G  E  Y  G  T  S  L  E  N  F  G  L  E  *  V  N  D  I  A  R  S  S  F  F  Q  :  S  I  L  L  *  L  L  A  W  I  L  Y  P  R  L  G  K  A  M  M  Y  I  R  N  S  W  R  S  P  S  Q  G  L  A  Q  V  A  K  V  E  G  S  S  S  L  A  S  C  E  L  S  L  I  F  K  W  T  L  C  L  V  P  R  V  G  P  D  *  F  L  G  Y  Q  E  K  D  P  A  Q  L  F  G  S  P  *  L  I  C  I  Y  L  N  V  *  D  V  H  Q  G  Q  S  D  Y  C  C  V  N  V  I  I  D  R  L  S  W  Q  T  I  *  E  V  S  V  L  *  Y  *  *  G  E  E  M  V  I  R  K  V  I  R  H  D  K  L  I  A  Y  H  G  Y  D  S  *  I  R  G  Y  W  G  *  S  L  G  *  N  I  S  K  *  S  N  I  V  *  F  P  Y  Y  C  S  P  S  F  V  F  C  N  F  S  I  I  C  C  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73572" stop="73090"/>
                    <exon start="71054" stop="70998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPQISLYDMNPFDKKQESDTDTKTPFLTEMDSEFAAFSPISLPFADPSSPFINFGSFATPLSQHPVGEGEGEGEGGEIEQPAEGGLGVPQPMECLHGIQIPPFLSKTFDLVEDPLLDTIISWGRNGESFVVWDPVEFSRLVLPRNFKHSNFSSFVRQLNTYVCSTEGEYGTSLENFGLE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73767" stop="73573"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KWSFRRKTPPTLQSCLQEIFLGLYVGVTYINLPSTPFTDFLSITLIEILNLLITKTIKVSIFDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="80003" PGL_stop="80841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80003" e_stop="80841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80003" e_stop="80841" e_length="839"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80003" stop="80841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717627" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATATAGGAGCTACACTTTTACCCAAATCAATCAAAAACCCTATCTCCTATTCCAATTTACAGCTGAAAATCCCCAATTGAAGCTCACAATTTCAGTTCTGTATATATATAACGATCAGATTTAGTCTCTTTGATTCGAGTTGTTCTTGAAATTTACATGAAATTAGTAATAAGCAGTGATTTTGTTGTTTGTTTTGATTTTGCGTTTTTTTTAATAGCAATTTTGGATGTAACCGATGTAAAATAGTTTGAATTTAGGGTTAGTTTTTTCTTTTATTATTTGATGATTGTTTGGATAAAGTGATGGAAATGGAGGGTTCTCGTAGACCATTTGATAGATCAAGATTGGAGCCAGGACCTAAGAAACCAAGATTAGTCGAAGCCCCAATTGGAACTGAGCGAGGTTCTAATGGGAGAAGCTTTATTCCTCAACGGGGAGCTGGGAATTCGAGGATTCGAGCTAGTGATAAAGGGGGAGACTCGGAAAACAGTGATTCGATTCGCGGGTCTTTTCAACAGCAGACGCAGCATCAGGAGCTAGTGAGTCAATATAAGACGGCTTTAGCTGAACTAACATTTAATTCAAAGCCGATAATTACAAACTTGACTATTATTGCTGGTGAGAATTTGCAAGCGGCCAAGGCAATTGCTGCTACTATCTGCAACAACATTATTGAGGTGATATTCCGGTTTTAAATGCTACTGTGTCAATGTTGTTGATTTTGTTTAATTTAGTGTGTTTTATTACTTGGTTGTACAGAAGTGAAATCTGATAAAGAAGGCAAAGTTAGATTTATGATATTTTAGATTAGTGCAGCTGGTGTAATGAGTGTTGT</gDNA_template>
            <first_frame> I  Y  I  G  A  T  L  L  P  K  S  I  K  N  P  I  S  Y  S  N  L  Q  L  K  I  P  N  *  S  S  Q  F  Q  F  C  I  Y  I  T  I  R  F  S  L  F  D  S  S  C  S  *  N  L  H  E  I  S  N  K  Q  *  F  C  C  L  F  *  F  C  V  F  F  N  S  N  F  G  C  N  R  C  K  I  V  *  I  *  G  *  F  F  L  L  L  F  D  D  C  L  D  K  V  M  E  M  E  G  S  R  R  P  F  D  R  S  R  L  E  P  G  P  K  K  P  R  L  V  E  A  P  I  G  T  E  R  G  S  N  G  R  S  F  I  P  Q  R  G  A  G  N  S  R  I  R  A  S  D  K  G  G  D  S  E  N  S  D  S  I  R  G  S  F  Q  Q  Q  T  Q  H  Q  E  L  V  S  Q  Y  K  T  A  L  A  E  L  T  F  N  S  K  P  I  I  T  N  L  T  I  I  A  G  E  N  L  Q  A  A  K  A  I  A  A  T  I  C  N  N  I  I  E  V  I  F  R  F  *  M  L  L  C  Q  C  C  *  F  C  L  I  *  C  V  L  L  L  G  C  T  E  V  K  S  D  K  E  G  K  V  R  F  M  I  F  *  I  S  A  A  G  V  M  S  V   </first_frame>
            <second_frame>  Y  I  *  E  L  H  F  Y  P  N  Q  S  K  T  L  S  P  I  P  I  Y  S  *  K  S  P  I  E  A  H  N  F  S  S  V  Y  I  *  R  S  D  L  V  S  L  I  R  V  V  L  E  I  Y  M  K  L  V  I  S  S  D  F  V  V  C  F  D  F  A  F  F  L  I  A  I  L  D  V  T  D  V  K  *  F  E  F  R  V  S  F  F  F  Y  Y  L  M  I  V  W  I  K  *  W  K  W  R  V  L  V  D  H  L  I  D  Q  D  W  S  Q  D  L  R  N  Q  D  *  S  K  P  Q  L  E  L  S  E  V  L  M  G  E  A  L  F  L  N  G  E  L  G  I  R  G  F  E  L  V  I  K  G  E  T  R  K  T  V  I  R  F  A  G  L  F  N  S  R  R  S  I  R  S  *  *  V  N  I  R  R  L  *  L  N  *  H  L  I  Q  S  R  *  L  Q  T  *  L  L  L  L  V  R  I  C  K  R  P  R  Q  L  L  L  L  S  A  T  T  L  L  R  *  Y  S  G  F  K  C  Y  C  V  N  V  V  D  F  V  *  F  S  V  F  Y  Y  L  V  V  Q  K  *  N  L  I  K  K  A  K  L  D  L  *  Y  F  R  L  V  Q  L  V  *  *  V  L  </second_frame>
            <third_frame>   I  Y  R  S  Y  T  F  T  Q  I  N  Q  K  P  Y  L  L  F  Q  F  T  A  E  N  P  Q  L  K  L  T  I  S  V  L  Y  I  Y  N  D  Q  I  *  S  L  *  F  E  L  F  L  K  F  T  *  N  *  *  *  A  V  I  L  L  F  V  L  I  L  R  F  F  *  *  Q  F  W  M  *  P  M  *  N  S  L  N  L  G  L  V  F  S  F  I  I  *  *  L  F  G  *  S  D  G  N  G  G  F  S  *  T  I  *  *  I  K  I  G  A  R  T  *  E  T  K  I  S  R  S  P  N  W  N  *  A  R  F  *  W  E  K  L  Y  S  S  T  G  S  W  E  F  E  D  S  S  *  *  *  R  G  R  L  G  K  Q  *  F  D  S  R  V  F  S  T  A  D  A  A  S  G  A  S  E  S  I  *  D  G  F  S  *  T  N  I  *  F  K  A  D  N  Y  K  L  D  Y  Y  C  W  *  E  F  A  S  G  Q  G  N  C  C  Y  Y  L  Q  Q  H  Y  *  G  D  I  P  V  L  N  A  T  V  S  M  L  L  I  L  F  N  L  V  C  F  I  T  W  L  Y  R  S  E  I  *  *  R  R  Q  S  *  I  Y  D  I  L  D  *  C  S  W  C  N  E  C  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80270" stop="80701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLLLFDDCLDKVMEMEGSRRPFDRSRLEPGPKKPRLVEAPIGTERGSNGRSFIPQRGAGNSRIRASDKGGDSENSDSIRGSFQQQTQHQELVSQYKTALAELTFNSKPIITNLTIIAGENLQAAKAIAATICNNIIEVIFRF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="85478" PGL_stop="86054"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85478" e_stop="86054"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="85478" e_stop="86054" e_length="577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85478" stop="86054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85478" stop="86018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85478" stop="85829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATGTTGGAACGCAAAATATTGGGCCGATGAATGCAACTCTGGAATCCAGGGGATCCATAGTGCAACAGGGAGAGACTCTCAGAGCTGCCTCTCCCTCTGCTCAGTCACCAATGCATCACCTTCCTCCATCCCCATCACTTATAACAAGCAACAGTAATCAAGTAATTAACAGTCCCGCTGAGCAGTACCAGATGCAAACCAGTTCTCGTTCTGATCCAAGACTATCCCAAATCTCAAGGAGGTCAAATCTAGATCCTCGTAACCAGTATGCCCAGGAATCTCTGACAATGCCATCTCGGAATACCATTTCAGTTAATTCACAAAGACAACACCCTCCAAGTTTGCAGAATTCGTCTGCCTTGTCTTCTTCTCATCAGTTGAGACAGAAGGTTCAGCGGGAAAGCCTGGAATCTGAATATTCTGTACAAACCAAGAATTCAACAGTTCCTGAGATTTCAGGTTTTCCTGATCCCTCTAGCACTAGCAGTTTGTTGGCTGCTGTTTTGAAGAGTGGAGTCATTGGTAATAAATCGAGTTCTGGTACTACGTCAAGTTCTCTTGATAAGGGTGCTCTC</gDNA_template>
            <first_frame> P  C  W  N  A  K  Y  W  A  D  E  C  N  S  G  I  Q  G  I  H  S  A  T  G  R  D  S  Q  S  C  L  S  L  C  S  V  T  N  A  S  P  S  S  I  P  I  T  Y  N  K  Q  Q  *  S  S  N  *  Q  S  R  *  A  V  P  D  A  N  Q  F  S  F  *  S  K  T  I  P  N  L  K  E  V  K  S  R  S  S  *  P  V  C  P  G  I  S  D  N  A  I  S  E  Y  H  F  S  *  F  T  K  T  T  P  S  K  F  A  E  F  V  C  L  V  F  F  S  S  V  E  T  E  G  S  A  G  K  P  G  I  *  I  F  C  T  N  Q  E  F  N  S  S  *  D  F  R  F  S  *  S  L  *  H  *  Q  F  V  G  C  C  F  E  E  W  S  H  W  *  *  I  E  F  W  Y  Y  V  K  F  S  *  *  G  C  S  </first_frame>
            <second_frame>  H  V  G  T  Q  N  I  G  P  M  N  A  T  L  E  S  R  G  S  I  V  Q  Q  G  E  T  L  R  A  A  S  P  S  A  Q  S  P  M  H  H  L  P  P  S  P  S  L  I  T  S  N  S  N  Q  V  I  N  S  P  A  E  Q  Y  Q  M  Q  T  S  S  R  S  D  P  R  L  S  Q  I  S  R  R  S  N  L  D  P  R  N  Q  Y  A  Q  E  S  L  T  M  P  S  R  N  T  I  S  V  N  S  Q  R  Q  H  P  P  S  L  Q  N  S  S  A  L  S  S  S  H  Q  L  R  Q  K  V  Q  R  E  S  L  E  S  E  Y  S  V  Q  T  K  N  S  T  V  P  E  I  S  G  F  P  D  P  S  S  T  S  S  L  L  A  A  V  L  K  S  G  V  I  G  N  K  S  S  S  G  T  T  S  S  S  L  D  K  G  A  L </second_frame>
            <third_frame>   M  L  E  R  K  I  L  G  R  *  M  Q  L  W  N  P  G  D  P  *  C  N  R  E  R  L  S  E  L  P  L  P  L  L  S  H  Q  C  I  T  F  L  H  P  H  H  L  *  Q  A  T  V  I  K  *  L  T  V  P  L  S  S  T  R  C  K  P  V  L  V  L  I  Q  D  Y  P  K  S  Q  G  G  Q  I  *  I  L  V  T  S  M  P  R  N  L  *  Q  C  H  L  G  I  P  F  Q  L  I  H  K  D  N  T  L  Q  V  C  R  I  R  L  P  C  L  L  L  I  S  *  D  R  R  F  S  G  K  A  W  N  L  N  I  L  Y  K  P  R  I  Q  Q  F  L  R  F  Q  V  F  L  I  P  L  A  L  A  V  C  W  L  L  F  *  R  V  E  S  L  V  I  N  R  V  L  V  L  R  Q  V  L  L  I  R  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85479" stop="86054"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVGTQNIGPMNATLESRGSIVQQGETLRAASPSAQSPMHHLPPSPSLITSNSNQVINSPAEQYQMQTSSRSDPRLSQISRRSNLDPRNQYAQESLTMPSRNTISVNSQRQHPPSLQNSSALSSSHQLRQKVQRESLESEYSVQTKNSTVPEISGFPDPSSTSSLLAAVLKSGVIGNKSSSGTTSSSLDKGAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="86124" PGL_stop="86483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86124" e_stop="86483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86124" e_stop="86483" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86124" stop="86483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGTCACTAGTCTATCAATGGACAGAAATGCTTCGAACTCTCCAAATTATTCCCAGAGAAATGTAGAACAGCCACCATTGCCACCTGGTCTGCCTCCAACTCTTGCAGGTACTGCATCATCGCAGACGCCGAATGCACCAAATATTGCTTCCAGTCCTCTTTCAAGTATTTTGAGTACATTGGTGGCGAAGGGGTTAATATCCGCATCAAAGAAGGACCCTCCTATTTATACTCCTTCAGATACACCTCCTCAAACTCAGAACCTTATTCCACCTGCAAGTTCCATTTCAACTCCTGCTTTATCTGCTCCAACATCTTCATCTGTTCCTTCTTCAGCTCATAAGGATGAACTTTCACAC</gDNA_template>
            <first_frame> S  V  T  S  L  S  M  D  R  N  A  S  N  S  P  N  Y  S  Q  R  N  V  E  Q  P  P  L  P  P  G  L  P  P  T  L  A  G  T  A  S  S  Q  T  P  N  A  P  N  I  A  S  S  P  L  S  S  I  L  S  T  L  V  A  K  G  L  I  S  A  S  K  K  D  P  P  I  Y  T  P  S  D  T  P  P  Q  T  Q  N  L  I  P  P  A  S  S  I  S  T  P  A  L  S  A  P  T  S  S  S  V  P  S  S  A  H  K  D  E  L  S  H </first_frame>
            <second_frame>  L  S  L  V  Y  Q  W  T  E  M  L  R  T  L  Q  I  I  P  R  E  M  *  N  S  H  H  C  H  L  V  C  L  Q  L  L  Q  V  L  H  H  R  R  R  R  M  H  Q  I  L  L  P  V  L  F  Q  V  F  *  V  H  W  W  R  R  G  *  Y  P  H  Q  R  R  T  L  L  F  I  L  L  Q  I  H  L  L  K  L  R  T  L  F  H  L  Q  V  P  F  Q  L  L  L  Y  L  L  Q  H  L  H  L  F  L  L  Q  L  I  R  M  N  F  H   </second_frame>
            <third_frame>   C  H  *  S  I  N  G  Q  K  C  F  E  L  S  K  L  F  P  E  K  C  R  T  A  T  I  A  T  W  S  A  S  N  S  C  R  Y  C  I  I  A  D  A  E  C  T  K  Y  C  F  Q  S  S  F  K  Y  F  E  Y  I  G  G  E  G  V  N  I  R  I  K  E  G  P  S  Y  L  Y  S  F  R  Y  T  S  S  N  S  E  P  Y  S  T  C  K  F  H  F  N  S  C  F  I  C  S  N  I  F  I  C  S  F  F  S  S  *  G  *  T  F  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86124" stop="86483"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVTSLSMDRNASNSPNYSQRNVEQPPLPPGLPPTLAGTASSQTPNAPNIASSPLSSILSTLVAKGLISASKKDPPIYTPSDTPPQTQNLIPPASSISTPALSAPTSSSVPSSAHKDELSH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86135" stop="86467"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SINGQKCFELSKLFPEKCRTATIATWSASNSCRYCIIADAECTKYCFQSSFKYFEYIGGEGVNIRIKEGPSYLYSFRYTSSNSEPYSTCKFHFNSCFICSNIFICSFFSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="86721" PGL_stop="87868"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86721" e_stop="87065"/>
            <exon e_start="87706" e_stop="87868"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.965" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="86721" e_stop="87065" e_length="345"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.965">
            <gDNA_intron_boundary i_start="87066" i_stop="87705" i_length="640"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87706" e_stop="87868" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86721" stop="87065"/>
              <exon start="87706" stop="87868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203431" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86729" stop="87065"/>
              <exon start="87706" stop="87855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203124" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86907" stop="87065"/>
              <exon start="87706" stop="87855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277297" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGTTGAATAATTCAAGAAAGTGGTATTTAAATTCTGGGGAATGGATTGCTGCATTTGGTGGCCTCCCTTGTGGCGATAAATCTGAAGGGCCAGCTGGAGGTTCTAGTGAGACATCAGAATGTACTGAGACCATGGTTCCTGCAGATGAATGTCAATGTGTGTGTGTTTTGTGTGGTGAGTTTTTTGAAGACTTCTACAATGAAGAAAGTGATGAATGGATGTTCAAAGATGCTGTTTACATGAGTATTCCAAGTGAAAGTGATTGTCAGGGTCCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGGTTTGCCTAGGATATAAAACTG : GTGTTGGATGCTTGATTTTTGTCTCTTAATCGAAGACAACCAGGTTCATTTTGAATTACTTGTAATGATTATACATCTTCTTGCTTAGTAAGCCTCTTCCATGCTTTTGTTTGAAACGACAATGAAATGGAAATTCTAGATACTAGAACAGTTTGCGCATCAT</gDNA_template>
            <first_frame> L  L  N  N  S  R  K  W  Y  L  N  S  G  E  W  I  A  A  F  G  G  L  P  C  G  D  K  S  E  G  P  A  G  G  S  S  E  T  S  E  C  T  E  T  M  V  P  A  D  E  C  Q  C  V  C  V  L  C  G  E  F  F  E  D  F  Y  N  E  E  S  D  E  W  M  F  K  D  A  V  Y  M  S  I  P  S  E  S  D  C  Q  G  P  I  V  H  K  N  C  I  S  E  S  S  C  Q  E  L  G  F  A  *  D  I  K  L  :  V  L  D  A  *  F  L  S  L  N  R  R  Q  P  G  S  F  *  I  T  C  N  D  Y  T  S  S  C  L  V  S  L  F  H  A  F  V  *  N  D  N  E  M  E  I  L  D  T  R  T  V  C  A  S  </first_frame>
            <second_frame>  C  *  I  I  Q  E  S  G  I  *  I  L  G  N  G  L  L  H  L  V  A  S  L  V  A  I  N  L  K  G  Q  L  E  V  L  V  R  H  Q  N  V  L  R  P  W  F  L  Q  M  N  V  N  V  C  V  F  C  V  V  S  F  L  K  T  S  T  M  K  K  V  M  N  G  C  S  K  M  L  F  T  *  V  F  Q  V  K  V  I  V  R  V  R  *  S  T  R  T  V  F  Q  K  V  L  V  K  S  W  G  L  P  R  I  *  N  W :   C  W  M  L  D  F  C  L  L  I  E  D  N  Q  V  H  F  E  L  L  V  M  I  I  H  L  L  A  *  *  A  S  S  M  L  L  F  E  T  T  M  K  W  K  F  *  I  L  E  Q  F  A  H  H </second_frame>
            <third_frame>   V  E  *  F  K  K  V  V  F  K  F  W  G  M  D  C  C  I  W  W  P  P  L  W  R  *  I  *  R  A  S  W  R  F  *  *  D  I  R  M  Y  *  D  H  G  S  C  R  *  M  S  M  C  V  C  F  V  W  *  V  F  *  R  L  L  Q  *  R  K  *  *  M  D  V  Q  R  C  C  L  H  E  Y  S  K  *  K  *  L  S  G  S  D  S  P  Q  E  L  Y  F  R  K  F  L  S  R  V  G  V  C  L  G  Y  K  T   : G  V  G  C  L  I  F  V  S  *  S  K  T  T  R  F  I  L  N  Y  L  *  *  L  Y  I  F  L  L  S  K  P  L  P  C  F  C  L  K  R  Q  *  N  G  N  S  R  Y  *  N  S  L  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86721" stop="87053"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLNNSRKWYLNSGEWIAAFGGLPCGDKSEGPAGGSSETSECTETMVPADECQCVCVLCGEFFEDFYNEESDEWMFKDAVYMSIPSESDCQGPIVHKNCISESSCQELGFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="87956" PGL_stop="88392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87956" e_stop="88392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="87956" e_stop="88392" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87956" stop="88392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241201" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGAACAAAAATCATCCAGCTGCAATTCTGTTCAAGATCCAACTTATACTTAAGCAAGCTACTGAGTGTGCATTCACTTTGTTAGAACATTAAGGGCTTAAAACTTTTACTAATTGTCTAGAGCCTCGGCAACTTTGTCCCTTTTAAGTTCTCGGACACTTGGACTATCATTGCAACCATATTGTTGGTTTTAGATAATGGATATTCCCAGATTATGATAGAAGTTCTTTGTTTATTGGGATGTAATTTCATTGCCTGTATGTTTATTGCAAGTCCTTGGTTTTTACTTCTAGTAGAAAGTAGGAGGTTCTTGAAGCTGTCGACTGAATGTTCGTTCACATTAGTTGCTGCTCAAGCTGATGAGAACCTTTACATACACAAACATCTGTGGAATTGTTCATTGTGAATTTTTTTTGTGCTCAACATCACAATCCTC</gDNA_template>
            <first_frame> I  E  Q  K  S  S  S  C  N  S  V  Q  D  P  T  Y  T  *  A  S  Y  *  V  C  I  H  F  V  R  T  L  R  A  *  N  F  Y  *  L  S  R  A  S  A  T  L  S  L  L  S  S  R  T  L  G  L  S  L  Q  P  Y  C  W  F  *  I  M  D  I  P  R  L  *  *  K  F  F  V  Y  W  D  V  I  S  L  P  V  C  L  L  Q  V  L  G  F  Y  F  *  *  K  V  G  G  S  *  S  C  R  L  N  V  R  S  H  *  L  L  L  K  L  M  R  T  F  T  Y  T  N  I  C  G  I  V  H  C  E  F  F  L  C  S  T  S  Q  S   </first_frame>
            <second_frame>  L  N  K  N  H  P  A  A  I  L  F  K  I  Q  L  I  L  K  Q  A  T  E  C  A  F  T  L  L  E  H  *  G  L  K  T  F  T  N  C  L  E  P  R  Q  L  C  P  F  *  V  L  G  H  L  D  Y  H  C  N  H  I  V  G  F  R  *  W  I  F  P  D  Y  D  R  S  S  L  F  I  G  M  *  F  H  C  L  Y  V  Y  C  K  S  L  V  F  T  S  S  R  K  *  E  V  L  E  A  V  D  *  M  F  V  H  I  S  C  C  S  S  *  *  E  P  L  H  T  Q  T  S  V  E  L  F  I  V  N  F  F  C  A  Q  H  H  N  P  </second_frame>
            <third_frame>   *  T  K  I  I  Q  L  Q  F  C  S  R  S  N  L  Y  L  S  K  L  L  S  V  H  S  L  C  *  N  I  K  G  L  K  L  L  L  I  V  *  S  L  G  N  F  V  P  F  K  F  S  D  T  W  T  I  I  A  T  I  L  L  V  L  D  N  G  Y  S  Q  I  M  I  E  V  L  C  L  L  G  C  N  F  I  A  C  M  F  I  A  S  P  W  F  L  L  L  V  E  S  R  R  F  L  K  L  S  T  E  C  S  F  T  L  V  A  A  Q  A  D  E  N  L  Y  I  H  K  H  L  W  N  C  S  L  *  I  F  F  V  L  N  I  T  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88078" stop="88362"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLGNFVPFKFSDTWTIIATILLVLDNGYSQIMIEVLCLLGCNFIACMFIASPWFLLLVESRRFLKLSTECSFTLVAAQADENLYIHKHLWNCSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="90557" PGL_stop="91392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90557" e_stop="91392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="90557" e_stop="91392" e_length="836"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90557" stop="91392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90557" stop="91245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90557" stop="91080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90615" stop="91308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90626" stop="91187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90628" stop="91379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90641" stop="91369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90656" stop="91279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGTAATAATTAAACTTTTGGCTATCTTTATAATTCTCACAAAACATAGTACTACAATCTTATGATACATCGAAATACAAGTTTTAATAAATTAAAGTTTCTTTTAGTACGTTGTACTATAATTTAAAGTATAGAAAAGAACATTACTAATTAACCATCCTTAAGAAAAAAAATAATATTAATATAAACTTGTTCAATGTTTTGGCTTGTGTTGAGTATAAATATAATCTAAATGAGCCTCTGCAGTCATTCTTCTCTTGAAACAAATTTCATCTTTTTCTTCACATTCTTCTATTCCCATGAGCTATTTCAATAAAAAAAATCAATTCGAAGTTAGAGTCGTATATATGAATTTTTAAAATCGGAGCTCAAAAATTATAATAAGTGTATTAAAGAAAATACAAAAAAAAATTTTATTACTCTATATATATTCTTAGAAGTTATATGTAATATCTAGACGATTCAACAATTTATATATGTACAAAAAAAATTATTTTTGCCATACTTTTTGGAAGAAAATATTTAAATTGAACCCCTTTTTATCTCTTAACTCCGAAATAAATGAAAGGTGATCAACTGAATATTTTTTTTAAAAAAATTATATCGTATATATAAAAAATTACTTTTCCATAAAAAAGAAAAATTCAAATACGAGCTAGCTAAAATCAATAGGCTAAAAAATTACTAGGCCTAAACACAAAAACAAATTGAAATTATTGCTTTATTATTCATAGCAAACAAAATATTTTGATAATTTATCGCTAAATAGAATTAACAAAGAATTTTTTTTACTAATTACAAAATCTTCTCACTAGCTAATTTTTTTTTGTTTTT</gDNA_template>
            <first_frame> K  S  N  N  *  T  F  G  Y  L  Y  N  S  H  K  T  *  Y  Y  N  L  M  I  H  R  N  T  S  F  N  K  L  K  F  L  L  V  R  C  T  I  I  *  S  I  E  K  N  I  T  N  *  P  S  L  R  K  K  I  I  L  I  *  T  C  S  M  F  W  L  V  L  S  I  N  I  I  *  M  S  L  C  S  H  S  S  L  E  T  N  F  I  F  F  F  T  F  F  Y  S  H  E  L  F  Q  *  K  K  S  I  R  S  *  S  R  I  Y  E  F  L  K  S  E  L  K  N  Y  N  K  C  I  K  E  N  T  K  K  N  F  I  T  L  Y  I  F  L  E  V  I  C  N  I  *  T  I  Q  Q  F  I  Y  V  Q  K  K  L  F  L  P  Y  F  L  E  E  N  I  *  I  E  P  L  F  I  S  *  L  R  N  K  *  K  V  I  N  *  I  F  F  L  K  K  L  Y  R  I  Y  K  K  L  L  F  H  K  K  E  K  F  K  Y  E  L  A  K  I  N  R  L  K  N  Y  *  A  *  T  Q  K  Q  I  E  I  I  A  L  L  F  I  A  N  K  I  F  *  *  F  I  A  K  *  N  *  Q  R  I  F  F  T  N  Y  K  I  F  S  L  A  N  F  F  L  F   </first_frame>
            <second_frame>  R  V  I  I  K  L  L  A  I  F  I  I  L  T  K  H  S  T  T  I  L  *  Y  I  E  I  Q  V  L  I  N  *  S  F  F  *  Y  V  V  L  *  F  K  V  *  K  R  T  L  L  I  N  H  P  *  E  K  K  *  Y  *  Y  K  L  V  Q  C  F  G  L  C  *  V  *  I  *  S  K  *  A  S  A  V  I  L  L  L  K  Q  I  S  S  F  S  S  H  S  S  I  P  M  S  Y  F  N  K  K  N  Q  F  E  V  R  V  V  Y  M  N  F  *  N  R  S  S  K  I  I  I  S  V  L  K  K  I  Q  K  K  I  L  L  L  Y  I  Y  S  *  K  L  Y  V  I  S  R  R  F  N  N  L  Y  M  Y  K  K  N  Y  F  C  H  T  F  W  K  K  I  F  K  L  N  P  F  L  S  L  N  S  E  I  N  E  R  *  S  T  E  Y  F  F  *  K  N  Y  I  V  Y  I  K  N  Y  F  S  I  K  K  K  N  S  N  T  S  *  L  K  S  I  G  *  K  I  T  R  P  K  H  K  N  K  L  K  L  L  L  Y  Y  S  *  Q  T  K  Y  F  D  N  L  S  L  N  R  I  N  K  E  F  F  L  L  I  T  K  S  S  H  *  L  I  F  F  C  F  </second_frame>
            <third_frame>   E  *  *  L  N  F  W  L  S  L  *  F  S  Q  N  I  V  L  Q  S  Y  D  T  S  K  Y  K  F  *  *  I  K  V  S  F  S  T  L  Y  Y  N  L  K  Y  R  K  E  H  Y  *  L  T  I  L  K  K  K  N  N  I  N  I  N  L  F  N  V  L  A  C  V  E  Y  K  Y  N  L  N  E  P  L  Q  S  F  F  S  *  N  K  F  H  L  F  L  H  I  L  L  F  P  *  A  I  S  I  K  K  I  N  S  K  L  E  S  Y  I  *  I  F  K  I  G  A  Q  K  L  *  *  V  Y  *  R  K  Y  K  K  K  F  Y  Y  S  I  Y  I  L  R  S  Y  M  *  Y  L  D  D  S  T  I  Y  I  C  T  K  K  I  I  F  A  I  L  F  G  R  K  Y  L  N  *  T  P  F  Y  L  L  T  P  K  *  M  K  G  D  Q  L  N  I  F  F  K  K  I  I  S  Y  I  *  K  I  T  F  P  *  K  R  K  I  Q  I  R  A  S  *  N  Q  *  A  K  K  L  L  G  L  N  T  K  T  N  *  N  Y  C  F  I  I  H  S  K  Q  N  I  L  I  I  Y  R  *  I  E  L  T  K  N  F  F  Y  *  L  Q  N  L  L  T  S  *  F  F  F  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0100J12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="91870" PGL_stop="90562"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91857" e_stop="91670"/>
            <exon e_start="91561" e_stop="90844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91857" e_stop="91670" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="91561" e_stop="90844" e_length="718"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91857" stop="91670"/>
              <exon start="91561" stop="91054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91857" stop="91670"/>
              <exon start="91561" stop="91130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91856" stop="91670"/>
              <exon start="91561" stop="91234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91559" stop="90844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91559" stop="90849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91559" stop="90855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91559" stop="91150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91559" stop="91156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91558" stop="90927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91558" stop="90961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91558" stop="90979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91558" stop="91075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91558" stop="91117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240808" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG : AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGATGTAAGTTCTTTCTCTTATTTTCCACCCTTATATACGGTATATGAGCTTATCCGAATCGATATGATCAGTGAAAATTCATATTATCGATTTGAGATTTCACTTCTTTCAAAAACAAAAAAAAATTAGCTAGTGAGAAGATTTTGTAATTAGTAAAAAAAATTCTTTGTTAATTCTATTTAGCGATAAATTATCAAAATATTTTGTTTGCTATGAATAATAAAGCAATAATTTCAATTTGTTTTTGTGTTTAGGCCTAGTAATTTTTTAGCCTATTGATTTTAGCTAGCTCGTATTTGAATTTTTCTTTTTTATGGAAAAGTAATTTTTTATATATACGATATAATTTTTTTAAAAAAAATATTCAGTTGATCACCTTTCATTTATTTCGGAGTTAAGAGATAAAAAGGGGTTCAATTTAAATATTTTCTTCCAAAAAGTATGGCAAAAATAATTTTTTTTGTACATATATAAATTGTTGAATCGTCTAGATATTACATATAACTTCTAAGAATATATATAGAGTAATAAAATTTTTTTTTGTATTTTCTTTAATACACTTATTATAATTTTTGAGCTCCGATTTTAAAAATTCATATATACGACTCTAACTTCGAATTGATTTTTTTTATTGAAATAGCTCATGGGAATAGAAGAAT</gDNA_template>
            <first_frame> L  F  L  S  L  S  H  P  H  K  D  N  K  K  K  N  F  K  Q  K  K  K  S  I  N  Q  R  Q  K  N  G  A  K  K  Y  F  F  S  S  F  S  Y  G  F  T  T  N  F  L  H  N  N  S  S  F  I  A  N  N  *  F  S  R :   I  *  W  D  Y  *  *  *  S  N  F  L  T  S  T  R  R  F  Q  *  C  K  F  F  L  L  F  S  T  L  I  Y  G  I  *  A  Y  P  N  R  Y  D  Q  *  K  F  I  L  S  I  *  D  F  T  S  F  K  N  K  K  K  L  A  S  E  K  I  L  *  L  V  K  K  I  L  C  *  F  Y  L  A  I  N  Y  Q  N  I  L  F  A  M  N  N  K  A  I  I  S  I  C  F  C  V  *  A  *  *  F  F  S  L  L  I  L  A  S  S  Y  L  N  F  S  F  L  W  K  S  N  F  L  Y  I  R  Y  N  F  F  K  K  N  I  Q  L  I  T  F  H  L  F  R  S  *  E  I  K  R  G  S  I  *  I  F  S  S  K  K  Y  G  K  N  N  F  F  C  T  Y  I  N  C  *  I  V  *  I  L  H  I  T  S  K  N  I  Y  R  V  I  K  F  F  F  V  F  S  L  I  H  L  L  *  F  L  S  S  D  F  K  N  S  Y  I  R  L  *  L  R  I  D  F  F  Y  *  N  S  S  W  E  *  K  N </first_frame>
            <second_frame>  F  F  S  L  S  L  I  L  T  K  T  I  K  R  R  I  L  S  K  K  K  N  Q  *  I  K  G  K  K  M  E  Q  K  N  I  F  F  L  L  S  L  M  V  L  L  L  I  S  Y  T  T  T  A  R  L  L  P  T  I  N  S  Q   : E  S  N  G  I  I  S  N  N  P  I  S  S  Q  V  Q  E  D  F  N  D  V  S  S  F  S  Y  F  P  P  L  Y  T  V  Y  E  L  I  R  I  D  M  I  S  E  N  S  Y  Y  R  F  E  I  S  L  L  S  K  T  K  K  N  *  L  V  R  R  F  C  N  *  *  K  K  F  F  V  N  S  I  *  R  *  I  I  K  I  F  C  L  L  *  I  I  K  Q  *  F  Q  F  V  F  V  F  R  P  S  N  F  L  A  Y  *  F  *  L  A  R  I  *  I  F  L  F  Y  G  K  V  I  F  Y  I  Y  D  I  I  F  L  K  K  I  F  S  *  S  P  F  I  Y  F  G  V  K  R  *  K  G  V  Q  F  K  Y  F  L  P  K  S  M  A  K  I  I  F  F  V  H  I  *  I  V  E  S  S  R  Y  Y  I  *  L  L  R  I  Y  I  E  *  *  N  F  F  L  Y  F  L  *  Y  T  Y  Y  N  F  *  A  P  I  L  K  I  H  I  Y  D  S  N  F  E  L  I  F  F  I  E  I  A  H  G  N  R  R   </second_frame>
            <third_frame>   F  S  L  S  L  S  S  S  Q  R  Q  *  K  E  E  F  *  A  K  K  K  I  N  K  S  K  A  K  K  W  S  K  K  I  F  F  F  F  F  L  L  W  F  Y  Y  *  F  P  T  Q  Q  Q  L  V  Y  C  Q  Q  L  I  L  K  :  N  L  M  G  L  L  V  I  I  Q  F  P  H  K  Y  K  K  I  S  M  M  *  V  L  S  L  I  F  H  P  Y  I  R  Y  M  S  L  S  E  S  I  *  S  V  K  I  H  I  I  D  L  R  F  H  F  F  Q  K  Q  K  K  I  S  *  *  E  D  F  V  I  S  K  K  N  S  L  L  I  L  F  S  D  K  L  S  K  Y  F  V  C  Y  E  *  *  S  N  N  F  N  L  F  L  C  L  G  L  V  I  F  *  P  I  D  F  S  *  L  V  F  E  F  F  F  F  M  E  K  *  F  F  I  Y  T  I  *  F  F  *  K  K  Y  S  V  D  H  L  S  F  I  S  E  L  R  D  K  K  G  F  N  L  N  I  F  F  Q  K  V  W  Q  K  *  F  F  L  Y  I  Y  K  L  L  N  R  L  D  I  T  Y  N  F  *  E  Y  I  *  S  N  K  I  F  F  C  I  F  F  N  T  L  I  I  I  F  E  L  R  F  *  K  F  I  Y  T  T  L  T  S  N  *  F  F  L  L  K  *  L  M  G  I  E  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91784" stop="91670"/>
                    <exon start="91561" stop="91374"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKGKKMEQKNIFFLLSLMVLLLISYTTTARLLPTINSQESNGIISNNPISSQVQEDFNDVSSFSYFPPLYTVYELIRIDMISENSYYRFEISLLSKTKKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91870" e_stop="91670"/>
            <exon e_start="91561" e_stop="91500"/>
            <exon e_start="90862" e_stop="90562"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="0.995"/>
          <exon-intron don_prob="0.980" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="91870" e_stop="91670" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="91669" i_stop="91562" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91561" e_stop="91500" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.986">
            <gDNA_intron_boundary i_start="91499" i_stop="90863" i_length="637"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90862" e_stop="90562" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91870" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91857" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91857" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91857" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91857" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91857" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389589" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91856" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91856" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91856" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91856" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91855" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389590" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91824" stop="91670"/>
              <exon start="91561" stop="91500"/>
              <exon start="90862" stop="90562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90792" stop="90566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215575" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCTCATCTCTCTTTTTCTCTCTCTCTCTCATCCTCACAAAGACAATAAAAAGAAGAATTTTAAGCAAAAAAAAAAATCAATAAATCAAAGGCAAAAAAATGGAGCAAAAAAATATTTTTTTTCTTCTTTCTCTTATGGTTTTACTACTAATTTCCTACACAACAACAGCTCGTTTATTGCCAACAATTAATTCTCAAG : AATCTAATGGGATTATTAGTAATAATCCAATTTCCTCACAAGTACAAGAAGATTTCAATGAT : CTCATGGGAATAGAAGAATGTGAAGAAAAAGATGAAATTTGTTTCAAGAGAAGAATGACTGCAGAGGCTCATTTAGATTATATTTATACTCAACACAAGCCAAAACATTGAACAAGTTTATATTAATATTATTTTTTTTCTTAAGGATGGTTAATTAGTAATGTTCTTTTCTATACTTTAAATTATAGTACAACGTACTAAAAGAAACTTTAATTTATTAAAACTTGTATTTCGATGTATCATAAGATTGTAGTACTATGTTTTGTGAGAATTATAAAGATAGCCAAAAGTTTAATTATTA</gDNA_template>
            <first_frame> I  S  H  L  S  F  S  L  S  L  S  S  S  Q  R  Q  *  K  E  E  F  *  A  K  K  K  I  N  K  S  K  A  K  K  W  S  K  K  I  F  F  F  F  F  L  L  W  F  Y  Y  *  F  P  T  Q  Q  Q  L  V  Y  C  Q  Q  L  I  L  K  :  N  L  M  G  L  L  V  I  I  Q  F  P  H  K  Y  K  K  I  S  M  I :   S  W  E  *  K  N  V  K  K  K  M  K  F  V  S  R  E  E  *  L  Q  R  L  I  *  I  I  F  I  L  N  T  S  Q  N  I  E  Q  V  Y  I  N  I  I  F  F  L  K  D  G  *  L  V  M  F  F  S  I  L  *  I  I  V  Q  R  T  K  R  N  F  N  L  L  K  L  V  F  R  C  I  I  R  L  *  Y  Y  V  L  *  E  L  *  R  *  P  K  V  *  L  L </first_frame>
            <second_frame>  S  L  I  S  L  F  L  S  L  S  H  P  H  K  D  N  K  K  K  N  F  K  Q  K  K  K  S  I  N  Q  R  Q  K  N  G  A  K  K  Y  F  F  S  S  F  S  Y  G  F  T  T  N  F  L  H  N  N  S  S  F  I  A  N  N  *  F  S  R :   I  *  W  D  Y  *  *  *  S  N  F  L  T  S  T  R  R  F  Q  *   : S  H  G  N  R  R  M  *  R  K  R  *  N  L  F  Q  E  K  N  D  C  R  G  S  F  R  L  Y  L  Y  S  T  Q  A  K  T  L  N  K  F  I  L  I  L  F  F  F  L  R  M  V  N  *  *  C  S  F  L  Y  F  K  L  *  Y  N  V  L  K  E  T  L  I  Y  *  N  L  Y  F  D  V  S  *  D  C  S  T  M  F  C  E  N  Y  K  D  S  Q  K  F  N  Y   </second_frame>
            <third_frame>   L  S  S  L  F  F  S  L  S  L  I  L  T  K  T  I  K  R  R  I  L  S  K  K  K  N  Q  *  I  K  G  K  K  M  E  Q  K  N  I  F  F  L  L  S  L  M  V  L  L  L  I  S  Y  T  T  T  A  R  L  L  P  T  I  N  S  Q   : E  S  N  G  I  I  S  N  N  P  I  S  S  Q  V  Q  E  D  F  N  D  :  L  M  G  I  E  E  C  E  E  K  D  E  I  C  F  K  R  R  M  T  A  E  A  H  L  D  Y  I  Y  T  Q  H  K  P  K  H  *  T  S  L  Y  *  Y  Y  F  F  S  *  G  W  L  I  S  N  V  L  F  Y  T  L  N  Y  S  T  T  Y  *  K  K  L  *  F  I  K  T  C  I  S  M  Y  H  K  I  V  V  L  C  F  V  R  I  I  K  I  A  K  S  L  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91784" stop="91670"/>
                    <exon start="91561" stop="91500"/>
                    <exon start="90862" stop="90752"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKGKKMEQKNIFFLLSLMVLLLISYTTTARLLPTINSQESNGIISNNPISSQVQEDFNDLMGIEECEEKDEICFKRRMTAEAHLDYIYTQHKPKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="103025" PGL_stop="103823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103025" e_stop="103823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="103025" e_stop="103823" e_length="799"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103025" stop="103823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCTCCGCCGCCGGCCACCGCAGATCCACCATGGACGACGGCGACCGAAGAGCACTAGATCTAGTGAAAGAGCTAGTACACCGCTTACTTTCCACTTCTACGCCGCCCTCCACCGCCGACTCCCACCAGTCCACTATCTTAAACCCTAACCCTGTCATACCTTCCGATCAACAGTATCACCAAGCGCTAAGATACGCCATTCGCATACTCTCCAGTCGAATGACACCTTCAATTGCTGCGGATGAGTCCGCAATGGTGGAATCCATTAAGCGACGGTTAGCTACTCAAGGTAAATCGTCTGATGCCTTAACTTTTGCTGATGTATATACCAAATTCTCGTTGAAAACAGGACAGGGTAGTGTAAGAAACAAATGGGCTGTTCTTTATTTGCTTAAAACCGTCTCCGAAGATCGGAAAATTCAAAAACACCAGTCTGCTTCTGTAGCACCTAACGGGTTTCTTAGCTCTGCATTGTCGGGTGGTTTACCGGAATTGGTTGGTAGTGAATCGAATCGTAATTTCGGGCTCAGAAATGATAGTTCTAAGGTTTTGAATAATGTGCAGGGTAACATGGATAATAGTAAGGATTCTAGGGGTTTGGTGGGTAAATTGGGTAAAATGGAGAAAGGCTATAGTGATCGTAGTCTGAGTGATGATTTTCAGAGTTTGAATTGTGTAGGTGATAATTCGAGAGTTTTGAGGGGTAAAGGTGAAGTAGGGAAGGGATGGAGTGGAGGGGTTTTGATGGTTTCCAAGGATCCGGAGAACTTACGTGATATGGCGTATAAGGAGTTTGTA</gDNA_template>
            <first_frame> H  L  R  R  R  P  P  Q  I  H  H  G  R  R  R  P  K  S  T  R  S  S  E  R  A  S  T  P  L  T  F  H  F  Y  A  A  L  H  R  R  L  P  P  V  H  Y  L  K  P  *  P  C  H  T  F  R  S  T  V  S  P  S  A  K  I  R  H  S  H  T  L  Q  S  N  D  T  F  N  C  C  G  *  V  R  N  G  G  I  H  *  A  T  V  S  Y  S  R  *  I  V  *  C  L  N  F  C  *  C  I  Y  Q  I  L  V  E  N  R  T  G  *  C  K  K  Q  M  G  C  S  L  F  A  *  N  R  L  R  R  S  E  N  S  K  T  P  V  C  F  C  S  T  *  R  V  S  *  L  C  I  V  G  W  F  T  G  I  G  W  *  *  I  E  S  *  F  R  A  Q  K  *  *  F  *  G  F  E  *  C  A  G  *  H  G  *  *  *  G  F  *  G  F  G  G  *  I  G  *  N  G  E  R  L  *  *  S  *  S  E  *  *  F  S  E  F  E  L  C  R  *  *  F  E  S  F  E  G  *  R  *  S  R  E  G  M  E  W  R  G  F  D  G  F  Q  G  S  G  E  L  T  *  Y  G  V  *  G  V  C  </first_frame>
            <second_frame>  I  S  A  A  G  H  R  R  S  T  M  D  D  G  D  R  R  A  L  D  L  V  K  E  L  V  H  R  L  L  S  T  S  T  P  P  S  T  A  D  S  H  Q  S  T  I  L  N  P  N  P  V  I  P  S  D  Q  Q  Y  H  Q  A  L  R  Y  A  I  R  I  L  S  S  R  M  T  P  S  I  A  A  D  E  S  A  M  V  E  S  I  K  R  R  L  A  T  Q  G  K  S  S  D  A  L  T  F  A  D  V  Y  T  K  F  S  L  K  T  G  Q  G  S  V  R  N  K  W  A  V  L  Y  L  L  K  T  V  S  E  D  R  K  I  Q  K  H  Q  S  A  S  V  A  P  N  G  F  L  S  S  A  L  S  G  G  L  P  E  L  V  G  S  E  S  N  R  N  F  G  L  R  N  D  S  S  K  V  L  N  N  V  Q  G  N  M  D  N  S  K  D  S  R  G  L  V  G  K  L  G  K  M  E  K  G  Y  S  D  R  S  L  S  D  D  F  Q  S  L  N  C  V  G  D  N  S  R  V  L  R  G  K  G  E  V  G  K  G  W  S  G  G  V  L  M  V  S  K  D  P  E  N  L  R  D  M  A  Y  K  E  F  V </second_frame>
            <third_frame>   S  P  P  P  A  T  A  D  P  P  W  T  T  A  T  E  E  H  *  I  *  *  K  S  *  Y  T  A  Y  F  P  L  L  R  R  P  P  P  P  T  P  T  S  P  L  S  *  T  L  T  L  S  Y  L  P  I  N  S  I  T  K  R  *  D  T  P  F  A  Y  S  P  V  E  *  H  L  Q  L  L  R  M  S  P  Q  W  W  N  P  L  S  D  G  *  L  L  K  V  N  R  L  M  P  *  L  L  L  M  Y  I  P  N  S  R  *  K  Q  D  R  V  V  *  E  T  N  G  L  F  F  I  C  L  K  P  S  P  K  I  G  K  F  K  N  T  S  L  L  L  *  H  L  T  G  F  L  A  L  H  C  R  V  V  Y  R  N  W  L  V  V  N  R  I  V  I  S  G  S  E  M  I  V  L  R  F  *  I  M  C  R  V  T  W  I  I  V  R  I  L  G  V  W  W  V  N  W  V  K  W  R  K  A  I  V  I  V  V  *  V  M  I  F  R  V  *  I  V  *  V  I  I  R  E  F  *  G  V  K  V  K  *  G  R  D  G  V  E  G  F  *  W  F  P  R  I  R  R  T  Y  V  I  W  R  I  R  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103026" stop="103823"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISAAGHRRSTMDDGDRRALDLVKELVHRLLSTSTPPSTADSHQSTILNPNPVIPSDQQYHQALRYAIRILSSRMTPSIAADESAMVESIKRRLATQGKSSDALTFADVYTKFSLKTGQGSVRNKWAVLYLLKTVSEDRKIQKHQSASVAPNGFLSSALSGGLPELVGSESNRNFGLRNDSSKVLNNVQGNMDNSKDSRGLVGKLGKMEKGYSDRSLSDDFQSLNCVGDNSRVLRGKGEVGKGWSGGVLMVSKDPENLRDMAYKEFV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="104230" PGL_stop="104659"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104230" e_stop="104659"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104230" e_stop="104659" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104230" stop="104659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTTGGTTTGCTGAGCCAATTGTGAAGATGAGATTGATGGCTGTTTTAGTTGATAACTGTAAGAGCTTAAAGGGTGGGGCAATGGCTGGTGCAATTCACATGCATGCTCAGCATGGTGATCCACTCGTTAATGATTTTATGAAGAGGTTATTGCGTCGGGTGTGTTCCCCTCTTTTTGAGATGGTGAGGAGATGGGTGCTTGAAGGAGAACTTGAAGATATATTTGCTGAGTTTTTCATTGTGAGTCAACCTGTAAAAGACGAGTCTCTTTGGAGAGAAGGTTACCGGCTTCATGCTGCCATGCTTCCTGCTTTTATTTCCCAGTCTCTTGCCAAACAGATATTAAGGACTGGTAAATCAATTAACTTTCTCAGAGTTTGTTGTGATGATCGTGGTTGGGCTGATGCTGCAACAGAAGCAGCAGCAGC</gDNA_template>
            <first_frame> Q  F  G  L  L  S  Q  L  *  R  *  D  *  W  L  F  *  L  I  T  V  R  A  *  R  V  G  Q  W  L  V  Q  F  T  C  M  L  S  M  V  I  H  S  L  M  I  L  *  R  G  Y  C  V  G  C  V  P  L  F  L  R  W  *  G  D  G  C  L  K  E  N  L  K  I  Y  L  L  S  F  S  L  *  V  N  L  *  K  T  S  L  F  G  E  K  V  T  G  F  M  L  P  C  F  L  L  L  F  P  S  L  L  P  N  R  Y  *  G  L  V  N  Q  L  T  F  S  E  F  V  V  M  I  V  V  G  L  M  L  Q  Q  K  Q  Q  Q  </first_frame>
            <second_frame>  S  L  V  C  *  A  N  C  E  D  E  I  D  G  C  F  S  *  *  L  *  E  L  K  G  W  G  N  G  W  C  N  S  H  A  C  S  A  W  *  S  T  R  *  *  F  Y  E  E  V  I  A  S  G  V  F  P  S  F  *  D  G  E  E  M  G  A  *  R  R  T  *  R  Y  I  C  *  V  F  H  C  E  S  T  C  K  R  R  V  S  L  E  R  R  L  P  A  S  C  C  H  A  S  C  F  Y  F  P  V  S  C  Q  T  D  I  K  D  W  *  I  N  *  L  S  Q  S  L  L  *  *  S  W  L  G  *  C  C  N  R  S  S  S  S </second_frame>
            <third_frame>   V  W  F  A  E  P  I  V  K  M  R  L  M  A  V  L  V  D  N  C  K  S  L  K  G  G  A  M  A  G  A  I  H  M  H  A  Q  H  G  D  P  L  V  N  D  F  M  K  R  L  L  R  R  V  C  S  P  L  F  E  M  V  R  R  W  V  L  E  G  E  L  E  D  I  F  A  E  F  F  I  V  S  Q  P  V  K  D  E  S  L  W  R  E  G  Y  R  L  H  A  A  M  L  P  A  F  I  S  Q  S  L  A  K  Q  I  L  R  T  G  K  S  I  N  F  L  R  V  C  C  D  D  R  G  W  A  D  A  A  T  E  A  A  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104232" stop="104657"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWFAEPIVKMRLMAVLVDNCKSLKGGAMAGAIHMHAQHGDPLVNDFMKRLLRRVCSPLFEMVRRWVLEGELEDIFAEFFIVSQPVKDESLWREGYRLHAAMLPAFISQSLAKQILRTGKSINFLRVCCDDRGWADAATEAAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 225 chains have been computed
$ 
$ memory statistics:
$ 1071760 bytes spliced alignments in total
$ 140 spliced alignments have been stored
$ 7655 bytes was the average size of a spliced alignment
$ 29408 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1729 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 279 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 11:05:07
-->
