<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-07 09:00:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1461" ref_strand="+" ref_description="SGN-M1461 T0532 [cos_markers]">
      <seq>accaaccctaagagggtcgccaaggcaattgcagagaagacttgcaatgctcttcttctcaaggttaaccaaatcggtagtgtgaccgagagtattgaagctgtgaagatgtccaagaaggcaggttggggtgtaatgaccagtcaccgcagtggagaaacagaagataccttcattgctgatcttgctgtcggtttgtcaacgggacaaatcaagactggagctccttgcaggtcagagcgtctcgccaagtacaaccagctgttgaggatcgaagaggaactcggatcagaggctgtttatgcaggagcaagcttccgcaagcccgttgagccctactaaatttcagcagttccaagtgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="1" stop="1138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121" g_stop="171" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="63" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="258" g_stop="346" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="152" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="451" g_stop="502" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="204" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="584" g_stop="640" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="261" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="734" g_stop="838" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="366" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-M1461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121" e_stop="171"/>
          <exon e_start="258" e_stop="346"/>
          <exon e_start="451" e_stop="502"/>
          <exon e_start="584" e_stop="640"/>
          <exon e_start="734" e_stop="838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAGGTATAGGTCATATATATCCCCGTCATGATAATCAAAGTTTCCTCTTTGAGATTGTATTAAAACATTTCTCTCTCGCTGTGTGTCAGGTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAGGTAAAGAACCAACGATCCTCATCCTCCACGATATCACTTCACAGAAAGTATAATAAATTTCGAGTAGTCATGTTCTAATTATCTCATAAAACTAATTGTTGCAGTGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACGGTAAGCTTTATAGAATCCAGATTATGATACTCAACAGATTGTAGGTGTTAACTTAACGAGTATTCTCCCGAATATAATCAGGGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAGGTAATTTATCGTTCAAAAATCCAGCCGTTGAACTCTTTCAAGTACACTTGCATTCCCAGCAAGCTTTTCTGATATTTCGTTCATCCTATTTAGCTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAG</genome_strand>
        <mrna_strand>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG......................................................................................GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG........................................................................................................TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG.................................................................................GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG.............................................................................................CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8007" ref_strand="+" ref_description="SGN-M8007 C2_At3g52940 [cosii_markers]">
      <seq>tcaataatctcttcatttctctcactccatcatggacttcggtgtctatgttgatcggattttttctctatttagctaccgttggatctattctacccggaaaacttgttcctggggcgactttatctgatggaactcgactccattatcgttgcaatggtttattatcacttctgttgttggttttgcttcttggagttgggtcgcagatgaatcttgtttcacctactgctatagcagatagaggacttgagcttttgtccacaacacttatctttagtgttcttgtgacattgatgctttatttggttggcctgaactcacgtgcaaagagttcatcactgaaacctcatgtctcaggaaatctaatccatgactggtggtttgggatacaactgaatcctgaattcatgggcattgatctcaaatttttctttgttagagctggtatgatgggatggttacttatcaatctttcagttcttgcaaaatgtgttatagaggctaaattgagccaatcaatgattctctaccagctattttgtgggctctacatccttgactacttcttctatgaagagttcatgacctccacatgggatataatagcagagaggttgggctacatgctggtttttggtgatctagtctttataccgttcaccttcagtattcagggttggtggcttttgagtaacaaagtggagctaacaacagcagcaataattgccaattgcctcgtctttcttattgggtactcggtgttcagaggagccaataagcagaagcatgtatttaaaaaggatcccaaggcacccatatggggtagtcctccaaaagttattgggggaaagttgcttgcttctggctattggggcattgcacggcactgtaattacctcggggatttgttgctggcatcgtcttttagtttaccttgtggtataagctctgtggttccatacttttaccccatatatcttctcattctactcatatggagggagagaagggacgaagctagatgtgcagagaagtacaaagatgtgtgggctgaataccgtaaacttgttccttacaggatcttaccttacgtttactagctcaatcgtttgtccacgttgcttgtgcattagagtcagaattagcctcactgtaccgcactacccaagcatgagaagggacgaactcatgaatgaatattacatcaaattcgagcttttgccctatctatgcagctttctcatctcctctacgaaagtaatcttttaatctatttcagttaggatcaacactgtatccaggttgtaactgattgcttagcttttgaaagtttttccagaaccaacttgtacactagatgtactttatcatggcaggatttaaatgtgctgcttgtattgaatgccaactatggaattatttttcatggtttgtaatcttggagcagcttactaatgtgtgctgaaattttcgaatgattttcccgactttctagttttttgtatgccccttgactaatttcaggagatatttgctacgttcccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="11641" stop="25371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11941" g_stop="11981" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11982" i_stop="12079" i_length="98">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12080" g_stop="12197" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="159" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12198" i_stop="13078" i_length="881">
            <donor d_prob="0.507" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13079" g_stop="13149" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="230" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13150" i_stop="13976" i_length="827">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13977" g_stop="14033" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="287" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14034" i_stop="14179" i_length="146">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14180" g_stop="14271" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="379" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14272" i_stop="15041" i_length="770">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15042" g_stop="15089" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="427" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15090" i_stop="15594" i_length="505">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15595" g_stop="15715" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="548" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15716" i_stop="15804" i_length="89">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="15805" g_stop="15851" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="595" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="15852" i_stop="16911" i_length="1060">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16912" g_stop="16993" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="677" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="18716" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="754" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="18936" g_stop="19055" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="874" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="19333" g_stop="19407" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="949" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.001" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="19495" g_stop="20096" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="950" r_stop="1551" r_length="602" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1552" polyA_stop="1579"/>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-M8007" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1551</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11941" e_stop="11981"/>
          <exon e_start="12080" e_stop="12197"/>
          <exon e_start="13079" e_stop="13149"/>
          <exon e_start="13977" e_stop="14033"/>
          <exon e_start="14180" e_stop="14271"/>
          <exon e_start="15042" e_stop="15089"/>
          <exon e_start="15595" e_stop="15715"/>
          <exon e_start="15805" e_stop="15851"/>
          <exon e_start="16912" e_stop="16993"/>
          <exon e_start="18716" e_stop="18792"/>
          <exon e_start="18936" e_stop="19055"/>
          <exon e_start="19333" e_stop="19407"/>
          <exon e_start="19495" e_stop="20096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCGGTCAGTATTTTTTCTTCTCTATTTGACTGTACATGTATCTATACAATCTGTGTGATTTTTTTTTTTTGCTGATTTTGTTCTTGTTTTGGTGAATATAGGTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATGGTAATGTGAATTGGTGTGTATTTTGATGAGTGGAGTCAGGATTTGAAGTTTATGGGTTTTGAGCTTGTTATCGAAAGCATTTAGTTAATGGGGGTTCGAATAATTTAAGCAAAAACTATTGAGTTCGTCTGGACTCTTGGTTAATGTTGTAGTTTTGTCTAGGGGATTTGAAGTTTATGGATTGTGAACTTTTTGTGGAACCCGTTCAGCTAAGCTATTGAGTTTGTTTGGACTCCTAGGGAATATTGTAGTTTTTCCTGGTGGGATTTGAGGTATATGGATTCTGAACTTGTTATCGAACCTGCTTAGTTAGTGGGTTGTTACTTGAATATTTATGCTTATCTAATGGATTTCCTAATACAATTATAAGGTTTAAGCAAAAGTTATTGGGTTTGTTTTAACTCCTATTTAATAGTGTAGTTTTGCTTGGACCCTTCGGGGTGGCTCAGTGGTTTGAGCTTGGGACTTCCATGTTGGACGTCTCAAGTTCGAAATCCTTTGCCAGCGAAAGCAAGGGGTTTGCCTTCTGGATCGAGAAAGCCTGGTGCGGGTTACGTCTCCTATGTGTTTTGCGAGCTATTGCATAGGAGCGGGGGTTTTACCTGTGCGCACCCTTTAAGGGTAGGTTTCCCTTGTCATAAAAAAAATGTAGTTTTGCTTGGTAGGACTTTGAAGTTGATGGATTCTGAACTTCTTGATGAATATATAGCTCGTTTTTGGTAATGTCTTTGCGATTAATATATAAATGCTTATTTAATAGAGTCTGTGCAAAAACTATTGGGTTGGTTCAAACCCGTACTTAATACTGTAGCTCTGCCCTTGTATATTTTCATGTTTCTCCATGCGGGTTGAGCTTAGATTATTTGTTGTTGCTATTTCAGGTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACTGTGAGTGTGGAATATTTCTTTTGTAGCAAAGGATGTACTTTGGGTTCATTTGCATTCCCTGTTTATTAAGTTTGTTTGCACAAGTATTGCTTGTAAAACCTTCTTATGCGGATGAGCGAGGAACAATTTCTTGCTACACTTCGTGTAGAAGTGATGAGAGTGAGGATTTGTACTCATTGTTCCCAAGAGTCTCGTCTCCGGTGGAACAAATATTCTGTTGTTACTTTCTTTTCCTTGCATGGATGGTGAGATTGAGAAGCTGCATAATTTCACGTGAATTTATTCTTCCTTTTCATATCATTAAATTTAGGAACCAGGTTGTCATTTCAGTGAAAAAGAAATAATTGTGATATTATATGGCTTTCTCATTTCATACCAAAACCTTCAACAGAATTGGTGGTATGATGTCCAACTGCTGTAGTACCTTTCTGTTGTTTTTCCTCCTGCTTTTTTGATGACAATGTACTGTTAGCTTTTGTTCTTTTGTTATCTTTCTATTGTTGTCAATCTGATTTATCTTCATCGTCCCTGGAGAATTACTTGGTTAAGTACAAAACAAATTGTCAATCTGTTCATCTTCAATATCCCTATAGAATAACTTGGTGAAGTACAAAAACTGAAATAGAAGGACAAATTCTGCTGTTTACATGAGTGTACAAACTGGTTACTTAAAAGAACTTCACTTGGATCCAAAATTGCTCACAATGCTGCATCTTCAAATGATGCTGAAAACATGTGAAGGTCTAGAGTGTTGTATGTTTGGACAGGTTTTCTGTTTTTGGTATACTCATAAAGAGATGAAATCACCTATTCCTAATGCATTGCAGGCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTTGTAAGTGAAGAATGTCATACCATAAGAAAGTAATTTATTCTTGATTATGCTTTTATTGACACAAACTTTCTTGTTCTGCAAAAGTTTCTAGCAAGTTAGAAGTTTCATTCTGGTATCTTAATTGTGAATGGCTGAATGATATTTAGGTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGACTGGTAAGTCAATTGACTCTATGCTGTCGTTTATATTCTGAAAAGTTCTTAACACTAATAAAATGGTAATGTCATTCTTTATTGAACTGTCTTCCATCCATCCTTTGATCTATCTGTGTATTTATAAGACAGTTTGTGAATTGTTGTGAAGTTACCATTCAACATAAGATTTTTATTACTATTAAATAGTAAGAGCAGGAGTGAATAATTTTAATTTTCTCAATTAGTACCGGCATTTTGGCCTTTACCCAAGATATACTTAGATAACCATAGAATCGAGAGTTCTAATATATCTGTAATAATATATGACTATTAACAGTCATTAATTTTCTCACTTGACTCTGAGTGCACCTTAACAACCGGTAGTTCATTTTTCGGAAAAAGAAAAAGGAGAAGAATAATTTAGCTGTGGAAATTCATTGTTTTTCAGCTTTCATTAAAAAAGAGTAGGTTGATCTAGGTTTGACACATGACAACGAAAGTTTGTCGTTGAAGAGAACACCTCAGTATTATGAATCCTCAGCTCACTGCTGGAAAGCTTCTGCAATAGAAATCAGGGTAACATGATTTTGGCTATTATTCGACATATATAGGTAGTGATGGTCAAACACAGTACGAATATGGTTAAATTAAGCCGACTGTAGACTGATAACATCTTGTGTTTTCACCACATTGGAGCAAGATATTTATTTTGTTCTCTACATTAAGATTCTGTTGATTTTATTGTAATGAATACTCTCCTAATCTTTCTTCTATCCTATTTCCTTGACTAGGTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAAGTATGTACTCATATCTCAGACCTTGTCTTTCACCATTGTTACAAGTGAACATTGAGAATTCAAAGTTTTCATCAGGCTATAATTTGATTATTTAGTTTATTTTGTTCGATATGTCCGGTAGTAACTTTGCTTAATCCTTTTCATGTTAATGACCAATCCATAAGCACTCAGCAGTTCCCACCAATAGTGAATTGTATATTTTGTAACCTAATTTAGTTTAGCTCTAAAAATGCTTTCTTCTGCTACCTGAAGGAAGAAAATATAGAGAATCCTTAATTTGTTTGGAGTGAACTATTGATGTTTGGCATGAAAAACTTACATGTTTTTGATGAACCAGAACTCATTTTCTGTCAAACTCCAAGCATAGTTGAATTCCTAGTCGAAGAGATTTTGAGAGGCCAGAATAGTTATTTTTGTTGTAATGAACTAATGACTCTCAGCTTCAATCAAGGCTATTTGGTTATTTCTTTTGACTTCTCTGCTTATGATGAATTTTCTGCTGTAGATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGGGTAAGTCGCTGGCTGTACACTTCCAAGTATACCTTCTTGAGTATTTGCTAGTGATTTTTAAAACTTCTTTTATATGTGTTTAATTGCAGCTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCACGTAAGTTGGCGGCTTCTTCTCCGTTTAACTTTTTTAAGATTGAAAAGTTGTTGTGAAGCAAGAACTGGTGTTTCTCTTCTATCCCTTCTTTAATTTATGTCAGCTGTCCAGAATTTTATCTCTCTTTCACTAGCAGTTTCTTCATCTTTATTTGTTGTGTTGTTATTATGCTTTGATCTAAAATTCAAAATAAATCATCCATATGACAAGAATACCACATTGTACGCAACAAAATTAGAAGAGGGTAGGAAAAGGTTTAGGTGTTTAGCCATGAGAAGCATTAGCTTGGGAAGGATAATATGGTTTCTGGTCATTTTCGTGCTTTAATAAGGTAATGCTGGAAGCTGTATAATTAAAGGATTATGAGGTTTGCCGACTGGACTTGTTTGGGACTGAGGTGTTGTTGTTTATGAGGTAGCTGGGTTTGGTCCCTGGTGTCATGGTCAGAGAATCAACAACTGGAAGGAAATGGAGGGAGTTAGGGCAGCATAGGTTGTTTTGCATGGTCTAGGGGTGGTTGATTAGTAGCCTGGTCACAAGGGTTAGAATTAAAACAAGAAACTTCTTCCGAGTTCTATACATCCAATAACATGTCAGTTGAAACGAAGCAACTCTGAAGAACCTCTAGTGATGCTAACATTTGAACCCTACGGAACACAACTACTCCCAGAAACCTTGGAAGGGTCTGGCTGGGGCACCACTATTCTCATGTTAGGATTGTTTTGGGGGTGGGTGGGTGTTGAATTATGATATGATTGTTTTTTAGCTATAGTGAGTGGTTTTAATTTGTACGTAGCATGTACCAATTCAATATTATTGGGAGCATGAATTTTTATTGAAAATTTGAATTTATAAGGTTTGACCTTTCTAAGCCCTAAAATGTCTCATTATTGGCTGAATGATATGTTTGTTTTGTTAATTGTTAACCAGTGATTATATATTGATGGTGGTCACCTCATCTATTCCTCTTACCTTTCCCTTTCTTTGTAGTCTTAATATTATCTTCCTCCATTAAGTTTCTCAGCTACGGTTGTGTAAAGTCTTGTTTCTCCATTCTCAGATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAGGCATGTATTCACAACCAATTCTTATTGCCACATACAAATCTATCCTTGTTTATATATGAATTATGGCACCTTTGATATCAGTATAATACAAATGTATATGACACCATTGGTATTAGTATAACACAAATGTATAGCTTGTAAATGAATTCTCTTCAAAAGCATAGTTTTGAACTATCACTTCTTGTGTCCTTCATCTCCTACTATATGTAATGATGCCTAGTTTCGTGGATACCAACACATTTTTTTTTTGAAATGGTAAAGGTTAGGCCATGCAACATATCCTTTTCCTGGAATTTATACCTCGCCTCATGCTACGATATTTTAATGGATATACTACTTGTTTGAATACCCAGAAAACTTTTTGTTTGTGTTTAGTTTTAAAGAATTTGAATCAAGGGCCTGTTAAAGAAGAGAAATGGAAAAGGAGAAACACATGTGTTTGTTTATCTTTTATTTTCTGAGGAAACCATGTATGGAAACTGTTGTCCCCTTCCTGAAAATGTTCTGAACAAGTTTTGTTTTTCGTAAAACACAGACGAATATTTCCATGTGTCCCCAATAATCAAAACGTGAACAACTTATGTTGTTAAAAGTACCCATTGCGCTGTGAAATCATACAGAATGAGAGAAGTCCTGATAACTTTGTTTTAGATAATATCCAATAGGGACCCTTTGGGGTGGCTTGGATGGTTTGGCTTGAGACTTCCATTATGGAGGTCTCAAGTTCGAAACCCCTTGTCTGCGACGACAGGATATTATCCTTCTAGGTTCAGCTTGTCGCACGGGGTGTGTATGTTGCTGTTGACCTCTTTTGTGTGGTTTACGGACCATTCCATAGGAGTGGGGTTTATCCTGTGCGCATTCGAAGGGTAGCGGCCGTAGGGTCCATTGTCATTAAAAAAACAATATCCAAGAGGGTATCCTGATTAAAGAGTTCTACTCTACTTATTATAGGGTAAATAATTGTTCTCGTTTATTAATAAGACAAGTAACTATTCTCCTTCATTAAACACAGAATAATTAGAAATAACCGGTAAAATTTTTATACATAACATTCTCCCACTCGAGTTCAATGACCCTAAACATATTTGCAACCTAGAAATCTACCATAATGGCCCTAAACATTCTTGCCTCATTAATGTTCTTGATTTTCAATTGTAGCAAGAATGTTTTTGTATTTTCTGTTGACCAGGCAATTGATAGTTCTGTGGCCTGATTGTGATTATCATGGTGCCAATTTCATGGTTGGGTTCATTGTGGAAAGGAGTCTAAACAATTTGTGTTCGGGTACAATGGTGTCCTGATGTGTGTCAGATAGTATTTGGAAAAGTTTTATAGTATGTCCAAGGACATGTGAAGAAGGCTTATGACTTTACCTTATCAAGAGAAGAGTTAAATATTATCTAGGAGCGGGAGTTCTCATTTCACTGCAGCCACTACCTAATATATATTTGGAATTAATGGCATACAAGAGTAACAAACAGAGATAGATGAAGCTGATTCTGGTTTCCAACTTTGAGTTCTATTACATCTGTGACTTGTGAGAATATAACACTGGAGAAAAGGGCGTATGCGAATGCATGGATTGTAATGACTCACGCTTCTACTCATATATATAGAGAGACTTTGTAATGAGGATATTTGCACTTGTTCAATGCAGGACAGTATACAAAGCTAGACTAACCTGTTTACTATCTAATAATATTTCTCTTCCTTTTTCAGGGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGGGTAAGCATGCAAGGCCATCTCAATACTATTTTTTCCTCCGTCATCTGTATTGTGCACTTTTGTTATGTTTTTCAGACAATTTTTTGTTTATTTGTTGCTTTCACTAACATTTCTTGACATGGACCCCTGTTTCGGATTGAAAGGTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTGGTAAGCTCTTGATCTTGCTTTTCTACTCTGTGTTATCGGTATCTTAATAATCCAGAACACGAAATGACTCCAGATTGAGAAAGACTATGTAATTTTTAATTTAGATACATGCGAGCTAGCTGTTGGATAAATACTTGAACTATATGATTAGTGTCCGTGAACATTTCATTCTGAACCACATTTCTTCTGAAGCTCATCAAATGTGGCATAGTGGCACATAAATTCTCTTCAGTTCTTCAAATTTTCGAAATTCTAAATCATTATATATTTTCTGAAGGGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAGGTAATAATTTTGAACTCTTGCTACTTCAGTTTCAATGACAATTTGCATAGTAGTGAAAAAAATTACATTACTCGTGTATGCCTGCAGCTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGTTTGTCCACGTTGCTTGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGCACTACCCAAGCATGAGAAGGGACGAACTCATGAATGAATATTACATCAAATTCGAGCTTTTGCCCTATCTATGCAGCTTTCTCATCTCCTCTACGAAAGTAATCTTTTAATCTATTTCAGTTAGGATCAACACTGTATCCAGGTTGTAACTGATTGCTTAGCTTTTGAAAGTTTTTCCAGAACCAACTTGTACACTAGATGTACTTTATCATGGCAGGATTTAAATGTGCTGCTTGTATTGAATGCCAACTATGGAATTATTTTTCATGGTTTGTAATCTTGGAGCAGCTTACTAATGTGTGCTGAAATTTTCGAATGATTTTCCCGACTTTCTAGTTTTTTGTATGCACCTTGACTAATTTCAGGAGATATTTGCTACGTTCCACCAG</genome_strand>
        <mrna_strand>TCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCG..................................................................................................GTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTT..................................................................................................................................................GTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTATAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG.........................................................................................CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG...............................................................................................................................................GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG.....................................................................................................................................................................................................................................................................................GGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAG.......................................................................................CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGTTTGTCCACGTTGCTTGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGCACTACCCAAGCATGAGAAGGGACGAACTCATGAATGAATATTACATCAAATTCGAGCTTTTGCCCTATCTATGCAGCTTTCTCATCTCCTCTACGAAAGTAATCTTTTAATCTATTTCAGTTAGGATCAACACTGTATCCAGGTTGTAACTGATTGCTTAGCTTTTGAAAGTTTTTCCAGAACCAACTTGTACACTAGATGTACTTTATCATGGCAGGATTTAAATGTGCTGCTTGTATTGAATGCCAACTATGGAATTATTTTTCATGGTTTGTAATCTTGGAGCAGCTTACTAATGTGTGCTGAAATTTTCGAATGATTTTCCCGACTTTCTAGTTTTTTGTATGCCCCTTGACTAATTTCAGGAGATATTTGCTACGTTCCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M518-F" ref_strand="+" ref_description="SGN-M518-F CT143-F [rflp_markers_forward]">
      <seq>atgggcattgatctcaaatttttctttgttagagctggtatgatgggatggttacttatcaatctttcagttcttgcaaaatgtgttatagaggctaaattgagccaatcaatgattctctaccagctattttgtgggctctacatccttgactacttcttctatgaagagttcatgacctccacatgggatataatagcagagaggttgggctacatgctggtttttggtgatctagtctttataccgttcaccttcagtattcagggttggtggcttttgagtaacaaagtggagctaacaacagcagcaataattgccaattgcctcgtctttcttattgggtactcggtgttcagaggagccaataagcagaagcatgtatttaaaaaggatcccaaggcacccatatggggtagtcctccaaaagttattgggggaaagttgcttgcttctggctattggggcattgcacggcactgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="14773" stop="19654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15073" g_stop="15089" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15090" i_stop="15594" i_length="505">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15595" g_stop="15715" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="138" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15716" i_stop="15804" i_length="89">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15805" g_stop="15851" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="185" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15852" i_stop="16911" i_length="1060">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16912" g_stop="16993" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="267" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18716" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="344" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18936" g_stop="19055" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="464" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19333" g_stop="19354" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="486" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-M518-F" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M518-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15073" e_stop="15089"/>
          <exon e_start="15595" e_stop="15715"/>
          <exon e_start="15805" e_stop="15851"/>
          <exon e_start="16912" e_stop="16993"/>
          <exon e_start="18716" e_stop="18792"/>
          <exon e_start="18936" e_stop="19055"/>
          <exon e_start="19333" e_stop="19354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGCATTGATCTCAAGTATGTACTCATATCTCAGACCTTGTCTTTCACCATTGTTACAAGTGAACATTGAGAATTCAAAGTTTTCATCAGGCTATAATTTGATTATTTAGTTTATTTTGTTCGATATGTCCGGTAGTAACTTTGCTTAATCCTTTTCATGTTAATGACCAATCCATAAGCACTCAGCAGTTCCCACCAATAGTGAATTGTATATTTTGTAACCTAATTTAGTTTAGCTCTAAAAATGCTTTCTTCTGCTACCTGAAGGAAGAAAATATAGAGAATCCTTAATTTGTTTGGAGTGAACTATTGATGTTTGGCATGAAAAACTTACATGTTTTTGATGAACCAGAACTCATTTTCTGTCAAACTCCAAGCATAGTTGAATTCCTAGTCGAAGAGATTTTGAGAGGCCAGAATAGTTATTTTTGTTGTAATGAACTAATGACTCTCAGCTTCAATCAAGGCTATTTGGTTATTTCTTTTGACTTCTCTGCTTATGATGAATTTTCTGCTGTAGATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGGGTAAGTCGCTGGCTGTACACTTCCAAGTATACCTTCTTGAGTATTTGCTAGTGATTTTTAAAACTTCTTTTATATGTGTTTAATTGCAGCTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCACGTAAGTTGGCGGCTTCTTCTCCGTTTAACTTTTTTAAGATTGAAAAGTTGTTGTGAAGCAAGAACTGGTGTTTCTCTTCTATCCCTTCTTTAATTTATGTCAGCTGTCCAGAATTTTATCTCTCTTTCACTAGCAGTTTCTTCATCTTTATTTGTTGTGTTGTTATTATGCTTTGATCTAAAATTCAAAATAAATCATCCATATGACAAGAATACCACATTGTACGCAACAAAATTAGAAGAGGGTAGGAAAAGGTTTAGGTGTTTAGCCATGAGAAGCATTAGCTTGGGAAGGATAATATGGTTTCTGGTCATTTTCGTGCTTTAATAAGGTAATGCTGGAAGCTGTATAATTAAAGGATTATGAGGTTTGCCGACTGGACTTGTTTGGGACTGAGGTGTTGTTGTTTATGAGGTAGCTGGGTTTGGTCCCTGGTGTCATGGTCAGAGAATCAACAACTGGAAGGAAATGGAGGGAGTTAGGGCAGCATAGGTTGTTTTGCATGGTCTAGGGGTGGTTGATTAGTAGCCTGGTCACAAGGGTTAGAATTAAAACAAGAAACTTCTTCCGAGTTCTATACATCCAATAACATGTCAGTTGAAACGAAGCAACTCTGAAGAACCTCTAGTGATGCTAACATTTGAACCCTACGGAACACAACTACTCCCAGAAACCTTGGAAGGGTCTGGCTGGGGCACCACTATTCTCATGTTAGGATTGTTTTGGGGGTGGGTGGGTGTTGAATTATGATATGATTGTTTTTTAGCTATAGTGAGTGGTTTTAATTTGTACGTAGCATGTACCAATTCAATATTATTGGGAGCATGAATTTTTATTGAAAATTTGAATTTATAAGGTTTGACCTTTCTAAGCCCTAAAATGTCTCATTATTGGCTGAATGATATGTTTGTTTTGTTAATTGTTAACCAGTGATTATATATTGATGGTGGTCACCTCATCTATTCCTCTTACCTTTCCCTTTCTTTGTAGTCTTAATATTATCTTCCTCCATTAAGTTTCTCAGCTACGGTTGTGTAAAGTCTTGTTTCTCCATTCTCAGATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAGGCATGTATTCACAACCAATTCTTATTGCCACATACAAATCTATCCTTGTTTATATATGAATTATGGCACCTTTGATATCAGTATAATACAAATGTATATGACACCATTGGTATTAGTATAACACAAATGTATAGCTTGTAAATGAATTCTCTTCAAAAGCATAGTTTTGAACTATCACTTCTTGTGTCCTTCATCTCCTACTATATGTAATGATGCCTAGTTTCGTGGATACCAACACATTTTTTTTTTGAAATGGTAAAGGTTAGGCCATGCAACATATCCTTTTCCTGGAATTTATACCTCGCCTCATGCTACGATATTTTAATGGATATACTACTTGTTTGAATACCCAGAAAACTTTTTGTTTGTGTTTAGTTTTAAAGAATTTGAATCAAGGGCCTGTTAAAGAAGAGAAATGGAAAAGGAGAAACACATGTGTTTGTTTATCTTTTATTTTCTGAGGAAACCATGTATGGAAACTGTTGTCCCCTTCCTGAAAATGTTCTGAACAAGTTTTGTTTTTCGTAAAACACAGACGAATATTTCCATGTGTCCCCAATAATCAAAACGTGAACAACTTATGTTGTTAAAAGTACCCATTGCGCTGTGAAATCATACAGAATGAGAGAAGTCCTGATAACTTTGTTTTAGATAATATCCAATAGGGACCCTTTGGGGTGGCTTGGATGGTTTGGCTTGAGACTTCCATTATGGAGGTCTCAAGTTCGAAACCCCTTGTCTGCGACGACAGGATATTATCCTTCTAGGTTCAGCTTGTCGCACGGGGTGTGTATGTTGCTGTTGACCTCTTTTGTGTGGTTTACGGACCATTCCATAGGAGTGGGGTTTATCCTGTGCGCATTCGAAGGGTAGCGGCCGTAGGGTCCATTGTCATTAAAAAAACAATATCCAAGAGGGTATCCTGATTAAAGAGTTCTACTCTACTTATTATAGGGTAAATAATTGTTCTCGTTTATTAATAAGACAAGTAACTATTCTCCTTCATTAAACACAGAATAATTAGAAATAACCGGTAAAATTTTTATACATAACATTCTCCCACTCGAGTTCAATGACCCTAAACATATTTGCAACCTAGAAATCTACCATAATGGCCCTAAACATTCTTGCCTCATTAATGTTCTTGATTTTCAATTGTAGCAAGAATGTTTTTGTATTTTCTGTTGACCAGGCAATTGATAGTTCTGTGGCCTGATTGTGATTATCATGGTGCCAATTTCATGGTTGGGTTCATTGTGGAAAGGAGTCTAAACAATTTGTGTTCGGGTACAATGGTGTCCTGATGTGTGTCAGATAGTATTTGGAAAAGTTTTATAGTATGTCCAAGGACATGTGAAGAAGGCTTATGACTTTACCTTATCAAGAGAAGAGTTAAATATTATCTAGGAGCGGGAGTTCTCATTTCACTGCAGCCACTACCTAATATATATTTGGAATTAATGGCATACAAGAGTAACAAACAGAGATAGATGAAGCTGATTCTGGTTTCCAACTTTGAGTTCTATTACATCTGTGACTTGTGAGAATATAACACTGGAGAAAAGGGCGTATGCGAATGCATGGATTGTAATGACTCACGCTTCTACTCATATATATAGAGAGACTTTGTAATGAGGATATTTGCACTTGTTCAATGCAGGACAGTATACAAAGCTAGACTAACCTGTTTACTATCTAATAATATTTCTCTTCCTTTTTCAGGGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGGGTAAGCATGCAAGGCCATCTCAATACTATTTTTTCCTCCGTCATCTGTATTGTGCACTTTTGTTATGTTTTTCAGACAATTTTTTGTTTATTTGTTGCTTTCACTAACATTTCTTGACATGGACCCCTGTTTCGGATTGAAAGGTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTGGTAAGCTCTTGATCTTGCTTTTCTACTCTGTGTTATCGGTATCTTAATAATCCAGAACACGAAATGACTCCAGATTGAGAAAGACTATGTAATTTTTAATTTAGATACATGCGAGCTAGCTGTTGGATAAATACTTGAACTATATGATTAGTGTCCGTGAACATTTCATTCTGAACCACATTTCTTCTGAAGCTCATCAAATGTGGCATAGTGGCACATAAATTCTCTTCAGTTCTTCAAATTTTCGAAATTCTAAATCATTATATATTTTCTGAAGGGGCATTGCACGGCACTGTAAT</genome_strand>
        <mrna_strand>ATGGGCATTGATCTCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTATAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG.........................................................................................CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG...............................................................................................................................................GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG.....................................................................................................................................................................................................................................................................................GGGCATTGCACGGCACTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8007-2" ref_strand="+" ref_description="SGN-M8007-2 C2_At3g52940-2 [cosii_markers]">
      <seq>tagcagagaggttgggcttcatgctggtttttggtgatctagtctttataccgttcaccttcagtattcagggttggtggcttttgagtaacaacgtggagctaacaacagcagcaataattgccaattgcctcgtctttcttattgggtactcggtgttcagaggagccaataagcagaagcatgtatttaaaaaggatcccaaggcaccaatatggggtagtcctccaaaagttattggggggaagttgcttgcttctggctattggggcattgcacggcactgtaattacctcggggacttgttactggcatcgtcttttagtttaccttgtggtataagctctgtggttccatacttttaccccatatatcttctcattctactcatatggagggagagaagggacgaagctagatgtgcggagaagtacaaagacgtgtgggctgaataccgtaaacttgttccttacaggatcttaccttatgtttactagctcaatcgtttgtccacgttgctgtgcattagagtcagaattagcctcactgtaccgtactacccaagcagcagaagggacaagcacatgaatattaaatcaaatccgagcttttgccctatttatgcagctttctcatctcctctacggaagtaatcttttaatctatttcagttaggatcgacactgaatcgagttgtaagtgattgcttagtttttgaaagtttttcccgaaccaacttgtacactagatgtactttatcatggcaggatttaaattaaaacttatgtgcttcttgtattgaatgccaactatggaattacttcgtatggttggttattaatgtgtcatgaaaattttaatgatttttccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="16623" stop="20270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16923" g_stop="16993" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18716" g_stop="18792" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="148" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18936" g_stop="19055" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="268" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19333" g_stop="19407" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="343" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.001" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19495" g_stop="19933" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="776" r_length="433" r_score="0.945"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19934" i_stop="20096" i_length="163">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.828" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20097" g_stop="20110" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="789" r_length="13" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-M8007-2" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M8007-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16923" e_stop="16993"/>
          <exon e_start="18716" e_stop="18792"/>
          <exon e_start="18936" e_stop="19055"/>
          <exon e_start="19333" e_stop="19407"/>
          <exon e_start="19495" e_stop="19933"/>
          <exon e_start="20097" e_stop="20110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAGGCATGTATTCACAACCAATTCTTATTGCCACATACAAATCTATCCTTGTTTATATATGAATTATGGCACCTTTGATATCAGTATAATACAAATGTATATGACACCATTGGTATTAGTATAACACAAATGTATAGCTTGTAAATGAATTCTCTTCAAAAGCATAGTTTTGAACTATCACTTCTTGTGTCCTTCATCTCCTACTATATGTAATGATGCCTAGTTTCGTGGATACCAACACATTTTTTTTTTGAAATGGTAAAGGTTAGGCCATGCAACATATCCTTTTCCTGGAATTTATACCTCGCCTCATGCTACGATATTTTAATGGATATACTACTTGTTTGAATACCCAGAAAACTTTTTGTTTGTGTTTAGTTTTAAAGAATTTGAATCAAGGGCCTGTTAAAGAAGAGAAATGGAAAAGGAGAAACACATGTGTTTGTTTATCTTTTATTTTCTGAGGAAACCATGTATGGAAACTGTTGTCCCCTTCCTGAAAATGTTCTGAACAAGTTTTGTTTTTCGTAAAACACAGACGAATATTTCCATGTGTCCCCAATAATCAAAACGTGAACAACTTATGTTGTTAAAAGTACCCATTGCGCTGTGAAATCATACAGAATGAGAGAAGTCCTGATAACTTTGTTTTAGATAATATCCAATAGGGACCCTTTGGGGTGGCTTGGATGGTTTGGCTTGAGACTTCCATTATGGAGGTCTCAAGTTCGAAACCCCTTGTCTGCGACGACAGGATATTATCCTTCTAGGTTCAGCTTGTCGCACGGGGTGTGTATGTTGCTGTTGACCTCTTTTGTGTGGTTTACGGACCATTCCATAGGAGTGGGGTTTATCCTGTGCGCATTCGAAGGGTAGCGGCCGTAGGGTCCATTGTCATTAAAAAAACAATATCCAAGAGGGTATCCTGATTAAAGAGTTCTACTCTACTTATTATAGGGTAAATAATTGTTCTCGTTTATTAATAAGACAAGTAACTATTCTCCTTCATTAAACACAGAATAATTAGAAATAACCGGTAAAATTTTTATACATAACATTCTCCCACTCGAGTTCAATGACCCTAAACATATTTGCAACCTAGAAATCTACCATAATGGCCCTAAACATTCTTGCCTCATTAATGTTCTTGATTTTCAATTGTAGCAAGAATGTTTTTGTATTTTCTGTTGACCAGGCAATTGATAGTTCTGTGGCCTGATTGTGATTATCATGGTGCCAATTTCATGGTTGGGTTCATTGTGGAAAGGAGTCTAAACAATTTGTGTTCGGGTACAATGGTGTCCTGATGTGTGTCAGATAGTATTTGGAAAAGTTTTATAGTATGTCCAAGGACATGTGAAGAAGGCTTATGACTTTACCTTATCAAGAGAAGAGTTAAATATTATCTAGGAGCGGGAGTTCTCATTTCACTGCAGCCACTACCTAATATATATTTGGAATTAATGGCATACAAGAGTAACAAACAGAGATAGATGAAGCTGATTCTGGTTTCCAACTTTGAGTTCTATTACATCTGTGACTTGTGAGAATATAACACTGGAGAAAAGGGCGTATGCGAATGCATGGATTGTAATGACTCACGCTTCTACTCATATATATAGAGAGACTTTGTAATGAGGATATTTGCACTTGTTCAATGCAGGACAGTATACAAAGCTAGACTAACCTGTTTACTATCTAATAATATTTCTCTTCCTTTTTCAGGGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGGGTAAGCATGCAAGGCCATCTCAATACTATTTTTTCCTCCGTCATCTGTATTGTGCACTTTTGTTATGTTTTTCAGACAATTTTTTGTTTATTTGTTGCTTTCACTAACATTTCTTGACATGGACCCCTGTTTCGGATTGAAAGGTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTGGTAAGCTCTTGATCTTGCTTTTCTACTCTGTGTTATCGGTATCTTAATAATCCAGAACACGAAATGACTCCAGATTGAGAAAGACTATGTAATTTTTAATTTAGATACATGCGAGCTAGCTGTTGGATAAATACTTGAACTATATGATTAGTGTCCGTGAACATTTCATTCTGAACCACATTTCTTCTGAAGCTCATCAAATGTGGCATAGTGGCACATAAATTCTCTTCAGTTCTTCAAATTTTCGAAATTCTAAATCATTATATATTTTCTGAAGGGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAGGTAATAATTTTGAACTCTTGCTACTTCAGTTTCAATGACAATTTGCATAGTAGTGAAAAAAATTACATTACTCGTGTATGCCTGCAGCTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGTTTGTCCACGTTGCTTGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGCACTACCCAAGCATGAGAAGGGACGAACTCATGAATGAATATTACATCAAATTCGAGCTTTTGCCCTATCTATGCAGCTTTCTCATCTCCTCTACGAAAGTAATCTTTTAATCTATTTCAGTTAGGATCAACACTGTATCCAGGTTGTAACTGATTGCTTAGCTTTTGAAAGTTTTTCCAGAACCAACTTGTACACTAGATGTACTTTATCATGGCAGGATTTAAATGTGCTGCTTGTATTGAATGCCAACTATGGAATTATTTTTCATGGTTTGTAATCTTGGAGCAGCTTACTAATGTGTGCTGAAATTTTCGAATGATTTTCCCGACTTTCTAGTTTTTTGTATGCACCTTGACTAATTTCAGGAGATATTTGCTACGTTCCACCAGGCAACATGTATATG</genome_strand>
        <mrna_strand>TAGCAGAGAGGTTGGGCTTCATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGGTGGCTTTTGAGTAACAACGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG...............................................................................................................................................GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCAATATGGGGTAGTCCTCCAAAAGTTATTGGGGGGAAGTTGCTTGCTTCTGGCTATTG.....................................................................................................................................................................................................................................................................................GGGCATTGCACGGCACTGTAATTACCTCGGGGACTTGTTACTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAG.......................................................................................CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCGGAGAAGTACAAAGACGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTATGTTTACTAGCTCAATCGTTTGTCCACGTTGC-TGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGTACTACCCAAGCAGCAGAAGGGAC-AA-GCA--CATGAATATTAAATCAAATCCGAGCTTTTGCCCTATTTATGCAGCTTTCTCATCTCCTCTACGGAAGTAATCTTTTAATCTATTTCAGTTAGGATCGACACTGAATCGA-GTTGTAAGTGATTGCTTAGTTTTTGAAAGTTTTTCCCGAACCAACTTGTACACTAGATGTACTTTATCATGGCAGGATTTAAAT...................................................................................................................................................................-TAAAACTTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M518-R" ref_strand="+" ref_description="SGN-M518-R CT143-R [rflp_markers_reverse]">
      <seq>ttttttttttgaaaaataattccatagttggcattcaatacaagcagcacatttaaatcctgccatgataaagtacatctagtgtacaagttggttctggaaaaactttcaaaagctaagcaatcagttacaacctggatacagtgttgatcctaactgaaatagattaaaagattactttcgtagaggagatgagaaagctgcatagatagggcaaaagctcgaatttgatgtaatattcattcatgagttcgtcccttctcatgcttgggtagtacggtacagtgaggctaattctgactctaatgcacaagcaacgtggacaaacgattgagctagtaaacgtaaggtaagatcctgtaaggaacaagtttacggtattcagcccacacatctttgtacttctctgcacatctagcttcgtcccttctctccctccatatgagtagaatgagaagatatatggggtaaaagtatggaaccacagagcttataccacaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="-" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="20274" stop="19193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19983" g_stop="19493" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="-" ref_id="SGN-M518-R" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M518-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19983" e_stop="19493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAACCATGAAAAATAATTCCATAGTTGGCATTCAATACAAGCAGCACATTTAAATCCTGCCATGATAAAGTACATCTAGTGTACAAGTTGGTTCTGGAAAAACTTTCAAAAGCTAAGCAATCAGTTACAACCTGGATACAGTGTTGATCCTAACTGAAATAGATTAAAAGATTACTTTCGTAGAGGAGATGAGAAAGCTGCATAGATAGGGCAAAAGCTCGAATTTGATGTAATATTCATTCATGAGTTCGTCCCTTCTCATGCTTGGGTAGTGCGGTACAGTGAGGCTAATTCTGACTCTAATGCACAAGCAACGTGGACAAACGATTGAGCTAGTAAACGTAAGGTAAGATCCTGTAAGGAACAAGTTTACGGTATTCAGCCCACACATCTTTGTACTTCTCTGCACATCTAGCTTCGTCCCTTCTCTCCCTCCATATGAGTAGAATGAGAAGATATATGGGGTAAAAGTATGGAACCACAGAGCT</genome_strand>
        <mrna_strand>TTTTTTTTTTGAAAAATAATTCCATAGTTGGCATTCAATACAAGCAGCACATTTAAATCCTGCCATGATAAAGTACATCTAGTGTACAAGTTGGTTCTGGAAAAACTTTCAAAAGCTAAGCAATCAGTTACAACCTGGATACAGTGTTGATCCTAACTGAAATAGATTAAAAGATTACTTTCGTAGAGGAGATGAGAAAGCTGCATAGATAGGGCAAAAGCTCGAATTTGATGTAATATTCATTCATGAGTTCGTCCCTTCTCATGCTTGGGTAGTACGGTACAGTGAGGCTAATTCTGACTCTAATGCACAAGCAACGTGGACAAACGATTGAGCTAGTAAACGTAAGGTAAGATCCTGTAAGGAACAAGTTTACGGTATTCAGCCCACACATCTTTGTACTTCTCTGCACATCTAGCTTCGTCCCTTCTCTCCCTCCATATGAGTAGAATGAGAAGATATATGGGGTAAAAGTATGGAACCACAGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7417" ref_strand="+" ref_description="SGN-M7417 C2_At2g36480 [cosii_markers]">
      <seq>ctcttgaataagggtgctgtgtcatcccaagccagtgcacagcctcatcccgctcagtgttccccatctgggcctaggatcccaccggcctccgtcactagtctatcgatggacagaaatgcttcaaatcctccaaattatccccagagaaatgtagaacagccaccattgccaccgtggtctacctcgaactcttgtagggagtgcatcattgcagacgcttaatgcaccaaatactgcttccagtcctctttcaagtattttgagtacattggtggcgaaggggttaatatctgcatcaaagaaagacccacctatttatactccttcggatacacctcctcaaactcagaaccttattccacctgcaagctccatttcaactcctgctttatctgctccaatatctgcatctgttccttcttcagctcctaaggatgaactttctcactcaaaaccttctgctaaaactcctgaggtcttacttcagtccacgaatgaagaggcaaaaagtctcattgggcttgtatttaagccagatgtgattcggaattcccatcctgctgtgatcagtgaccttcttgatgacgttccacatcagtgtggaatatgcggttttggacttaaactccaagagaaacttgatagacacttggagtggcactcattgagaaatccagatgtcaaactgttgaataattcaagaaagtggtatttaaattctggggaatggattgctgcatttggtggcctcccttgtggtgataaatccaaagggccagctggaggttctagtgagacatcagaatgtactgagaccatggttcctgcagatgaatgtcaatgtgtgtgtgttttgtgtggtgagttttttgaagacttctacaatgaagaaagtgacgaatggatgttcaaagatgctgtttacatgagtattccaagtgaaagtgattgtcagggtccgatagtccacaagaactgtatttcagaaagttcttgtcaagagttggggcttgcctaggatataaattggtgttggatgcttgatttttgttctgttaatcaaagataaccaggttcattttgaattacttgtaatggttatacatcttgcttagtaagcctcttccatgcttttatttgaaatggaaattctagatactagaacagtttgcgcatcacatcttcctcaatttgatacttactgtccacttacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0100J12-qVmkw/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0100J12.1" temp_strand="+" temp_description="C09HBa0100J12.1  EU139070.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0100J12 upload_account_name:spain">
        <position start="85735" stop="88207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86035" g_stop="87065" g_length="1031"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1032" r_length="1032" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87066" i_stop="87705" i_length="640">
            <donor d_prob="0.923" d_score="0.94"/>
            <acceptor a_prob="0.965" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87706" g_stop="87902" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1033" r_stop="1216" r_length="184" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0100J12.1" gen_strand="+" ref_id="SGN-M7417" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>1228</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0100J12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86035" e_stop="87065"/>
          <exon e_start="87706" e_stop="87902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTG-ATAAGGGTGCTCTCTCATCCCAAGCCAGTGCACAGCCTCATCCCGCCCAGTTTTCCACATCTGGGCCTAGGATACCGCCGGCCTCTGTCACTAGTCTATCAATGGACAGAAATGCTTCGAACTCTCCAAATTATTCCCAGAGAAATGTAGAACAGCCACCATTGCCACC-TGGTCTGCCTCCAACTCTTGCAGGTACTGCATCATCGCAGACGCCGAATGCACCAAATATTGCTTCCAGTCCTCTTTCAAGTATTTTGAGTACATTGGTGGCGAAGGGGTTAATATCCGCATCAAAGAAGGACCCTCCTATTTATACTCCTTCAGATACACCTCCTCAAACTCAGAACCTTATTCCACCTGCAAGTTCCATTTCAACTCCTGCTTTATCTGCTCCAACATCTTCATCTGTTCCTTCTTCAGCTCATAAGGATGAACTTTCACACTCGAAACCTTCTGCTGAAACTCCTGAGGTCTTACTTCAGTCCATGAAAGAAGAGGCAAAAAGTCTCATTGGGCTTGTATTTAAGCCAGATGTGATTCGGAATTCTCATCCTGCTGTGATCAGTGACCTTGTTGATGATGTTCCACTTCAGTGTGGAATATGCGGTTTTGGATTTAAATTCCAAGTGAAACTTGATAGACACTTGGAATGGCACTCATTGAGAAATCCAGATGTCAAACTGTTGAATAATTCAAGAAAGTGGTATTTAAATTCTGGGGAATGGATTGCTGCATTTGGTGGCCTCCCTTGTGGCGATAAATCTGAAGGGCCAGCTGGAGGTTCTAGTGAGACATCAGAATGTACTGAGACCATGGTTCCTGCAGATGAATGTCAATGTGTGTGTGTTTTGTGTGGTGAGTTTTTTGAAGACTTCTACAATGAAGAAAGTGATGAATGGATGTTCAAAGATGCTGTTTACATGAGTATTCCAAGTGAAAGTGATTGTCAGGGTCCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGGTTTGCCTAGGATATAAAACTGGTAAGTGATATGATGTTAAAGTTGATTTTAGATATTTTAAATACTTCACTAGATACTAATAATTATGAAAGAAGCCTTTTCATGTGGTTTGCTGGTAAATGGGTGGGATCTGTTTTTCATAGATAAGAATCTGCCATCGATTCTTAATGGAAAAACAAATATGTGGTACTTTTCATTGAAATTTTTCCCCAAATAAACTGAACACAAGTTACTTGTCGGCACCTTGAGTAAATTATGGATCTAATTGTCTGACAGCCCCATTTTGGAGTGCGTTGCTCTTAAGAATTAAATGCTTTTCAGAAGAGAGCACTTCCTAAAGTTCTTAAATTCTCGAAGTGCTTTGAATTCAAATTGGTTTTGTGCTGGCAATAAAATGGTTAGACAAGTTATGCTGCCCGTCAGAATTGTTAGTTGAAACTTTTGGACTGGCAATAAAATGGAGGAAGCTTAACTTTTGAAATACAATTTATGGATGCATTATTCTTTTTGATCTTCTTTTGGACTTGTGTACGTGCTTTTAATCTTGCCATCCTTCGTAGTTTGTAATTTGGTATTTATTCGTTCCTTGCAGTTCCTTTATTTCATTAGTAGCCACTGCTGACTTGTATTGTATCATATTGTCCATGGTTTCATTTCTCAGGTGTTGGATGCTTGATTTTTG-TCTCTTAATCGAAGACAACCAGGTTCATTTTGAATTACTTGTAATGATTATACATCTTCTTGCTTAGTAAGCCTCTTCCATGCTTTTGTTTGAAACGACAATGAAATGGAAATTCTAGATACTAGAACAGTTTGCGCATCATATCTTCCTCAATTTGATACTTTCTGTCCACTTAC</genome_strand>
        <mrna_strand>CTCTTGAATAAGGGTGCTGTGTCATCCCAAGCCAGTGCACAGCCTCATCCCGCTCAGTGTTCCCCATCTGGGCCTAGGATCCCACCGGCCTCCGTCACTAGTCTATCGATGGACAGAAATGCTTCAAATCCTCCAAATTATCCCCAGAGAAATGTAGAACAGCCACCATTGCCACCGTGGTCTACCTCGAACTCTTGTAGGGAGTGCATCATTGCAGACGCTTAATGCACCAAATACTGCTTCCAGTCCTCTTTCAAGTATTTTGAGTACATTGGTGGCGAAGGGGTTAATATCTGCATCAAAGAAAGACCCACCTATTTATACTCCTTCGGATACACCTCCTCAAACTCAGAACCTTATTCCACCTGCAAGCTCCATTTCAACTCCTGCTTTATCTGCTCCAATATCTGCATCTGTTCCTTCTTCAGCTCCTAAGGATGAACTTTCTCACTCAAAACCTTCTGCTAAAACTCCTGAGGTCTTACTTCAGTCCACGAATGAAGAGGCAAAAAGTCTCATTGGGCTTGTATTTAAGCCAGATGTGATTCGGAATTCCCATCCTGCTGTGATCAGTGACCTTCTTGATGACGTTCCACATCAGTGTGGAATATGCGGTTTTGGACTTAAACTCCAAGAGAAACTTGATAGACACTTGGAGTGGCACTCATTGAGAAATCCAGATGTCAAACTGTTGAATAATTCAAGAAAGTGGTATTTAAATTCTGGGGAATGGATTGCTGCATTTGGTGGCCTCCCTTGTGGTGATAAATCCAAAGGGCCAGCTGGAGGTTCTAGTGAGACATCAGAATGTACTGAGACCATGGTTCCTGCAGATGAATGTCAATGTGTGTGTGTTTTGTGTGGTGAGTTTTTTGAAGACTTCTACAATGAAGAAAGTGACGAATGGATGTTCAAAGATGCTGTTTACATGAGTATTCCAAGTGAAAGTGATTGTCAGGGTCCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGGCTTGCCTAGGATAT-AAATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGGATGCTTGATTTTTGTTCTGTTAATCAAAGATAACCAGGTTCATTTTGAATTACTTGTAATGGTTATACA---TCTTGCTTAGTAAGCCTCTTCCATGCTTTT-ATT----------TGAAATGGAAATTCTAGATACTAGAACAGTTTGCGCATCACATCTTCCTCAATTTGATACTTACTGTCCACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="121" PGL_stop="838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121" e_stop="171"/>
            <exon e_start="258" e_stop="346"/>
            <exon e_start="451" e_stop="502"/>
            <exon e_start="584" e_stop="640"/>
            <exon e_start="734" e_stop="838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121" e_stop="171" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="172" i_stop="257" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="258" e_stop="346" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.998">
            <gDNA_intron_boundary i_start="347" i_stop="450" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="451" e_stop="502" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="503" i_stop="583" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="584" e_stop="640" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="641" i_stop="733" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="734" e_stop="838" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121" stop="171"/>
              <exon start="258" stop="346"/>
              <exon start="451" stop="502"/>
              <exon start="584" stop="640"/>
              <exon start="734" stop="838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1461" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTCGCCAAGGCAATTGCAGAGAAGACTTGCAATGCTCTTCTTCTCAAG : GTTAACCAAATCGGTAGTGTGACCGAGAGTATTGAAGCTGTGAAGATGTCCAAGAAGGCAGGTTGGGGTGTAATGACCAGTCACCGCAG : TGGAGAAACAGAAGATACCTTCATTGCTGATCTTGCTGTCGGTTTGTCAACG : GGACAAATCAAGACTGGAGCTCCTTGCAGGTCAGAGCGTCTCGCCAAGTACAACCAG : CTGTTGAGGATCGAAGAGGAACTCGGATCAGAGGCTGTTTATGCAGGAGCAAGCTTCCGCAAGCCCGTTGAGCCCTACTAAATTTCAGCAGTTCCAAGTGTTGAG</gDNA_template>
            <first_frame> R  V  A  K  A  I  A  E  K  T  C  N  A  L  L  L  K  :  V  N  Q  I  G  S  V  T  E  S  I  E  A  V  K  M  S  K  K  A  G  W  G  V  M  T  S  H  R  S :   G  E  T  E  D  T  F  I  A  D  L  A  V  G  L  S  T  :  G  Q  I  K  T  G  A  P  C  R  S  E  R  L  A  K  Y  N  Q  :  L  L  R  I  E  E  E  L  G  S  E  A  V  Y  A  G  A  S  F  R  K  P  V  E  P  Y  *  I  S  A  V  P  S  V  E </first_frame>
            <second_frame>  G  S  P  R  Q  L  Q  R  R  L  A  M  L  F  F  S  R :   L  T  K  S  V  V  *  P  R  V  L  K  L  *  R  C  P  R  R  Q  V  G  V  *  *  P  V  T  A   : V  E  K  Q  K  I  P  S  L  L  I  L  L  S  V  C  Q  R :   D  K  S  R  L  E  L  L  A  G  Q  S  V  S  P  S  T  T  S :   C  *  G  S  K  R  N  S  D  Q  R  L  F  M  Q  E  Q  A  S  A  S  P  L  S  P  T  K  F  Q  Q  F  Q  V  L   </second_frame>
            <third_frame>   G  R  Q  G  N  C  R  E  D  L  Q  C  S  S  S  Q   : G  *  P  N  R  *  C  D  R  E  Y  *  S  C  E  D  V  Q  E  G  R  L  G  C  N  D  Q  S  P  Q  :  W  R  N  R  R  Y  L  H  C  *  S  C  C  R  F  V  N   : G  T  N  Q  D  W  S  S  L  Q  V  R  A  S  R  Q  V  Q  P   : A  V  E  D  R  R  G  T  R  I  R  G  C  L  C  R  S  K  L  P  Q  A  R  *  A  L  L  N  F  S  S  S  K  C  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121" stop="171"/>
                    <exon start="258" stop="346"/>
                    <exon start="451" stop="502"/>
                    <exon start="584" stop="640"/>
                    <exon start="734" stop="814"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVAKAIAEKTCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCRSERLAKYNQLLRIEEELGSEAVYAGASFRKPVEPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="11941" PGL_stop="20110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11941" e_stop="11981"/>
            <exon e_start="12080" e_stop="12197"/>
            <exon e_start="13079" e_stop="13149"/>
            <exon e_start="13977" e_stop="14033"/>
            <exon e_start="14180" e_stop="14271"/>
            <exon e_start="15042" e_stop="15089"/>
            <exon e_start="15595" e_stop="15715"/>
            <exon e_start="15805" e_stop="15851"/>
            <exon e_start="16912" e_stop="16993"/>
            <exon e_start="18716" e_stop="18792"/>
            <exon e_start="18936" e_stop="19055"/>
            <exon e_start="19333" e_stop="19407"/>
            <exon e_start="19495" e_stop="20096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.507" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.303" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.805" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.989" e_score="0.992"/>
          <exon-intron don_prob="0.957" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.001" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11941" e_stop="11981" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.963">
            <gDNA_intron_boundary i_start="11982" i_stop="12079" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12080" e_stop="12197" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.507" acc_prob="0.958">
            <gDNA_intron_boundary i_start="12198" i_stop="13078" i_length="881"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13079" e_stop="13149" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.303" acc_prob="0.969">
            <gDNA_intron_boundary i_start="13150" i_stop="13976" i_length="827"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13977" e_stop="14033" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.805" acc_prob="0.988">
            <gDNA_intron_boundary i_start="14034" i_stop="14179" i_length="146"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14180" e_stop="14271" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14272" i_stop="15041" i_length="770"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15042" e_stop="15089" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.760">
            <gDNA_intron_boundary i_start="15090" i_stop="15594" i_length="505"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="15595" e_stop="15715" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.942" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15716" i_stop="15804" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15805" e_stop="15851" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.957" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15852" i_stop="16911" i_length="1060"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16912" e_stop="16993" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="18716" e_stop="18792" e_length="77"/>
          </exon>
          <intron i_serial="10" don_prob="0.997" acc_prob="0.811">
            <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="18936" e_stop="19055" e_length="120"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="19333" e_stop="19407" e_length="75"/>
          </exon>
          <intron i_serial="12" don_prob="0.985" acc_prob="0.001">
            <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87"/>
          </intron>
          <exon e_serial="13" e_score="0.995">
            <gDNA_exon_boundary e_start="19495" e_stop="20096" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11941" stop="11981"/>
              <exon start="12080" stop="12197"/>
              <exon start="13079" stop="13149"/>
              <exon start="13977" stop="14033"/>
              <exon start="14180" stop="14271"/>
              <exon start="15042" stop="15089"/>
              <exon start="15595" stop="15715"/>
              <exon start="15805" stop="15851"/>
              <exon start="16912" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19055"/>
              <exon start="19333" stop="19407"/>
              <exon start="19495" stop="20096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15073" stop="15089"/>
              <exon start="15595" stop="15715"/>
              <exon start="15805" stop="15851"/>
              <exon start="16912" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19055"/>
              <exon start="19333" stop="19354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M518-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATAATCTCTTCATTTCTCTCACTCCATCATGGACTTCG : GTGTCTATGTTGATCGGATTTTTTCTCTATTTAGCTACCGTTGGATCTATTCTACCCGGAAAACTTGTTCCTGGGGCGACTTTATCTGATGGAACTCGACTCCATTATCGTTGCAATG : GTTTATTATCACTTCTGTTGTTGGTTTTGCTTCTTGGAGTTGGGTCGCAGATGAATCTTGTTTCACCTACT : GCTATAGCAGATAGAGGACTTGAGCTTTTGTCCACAACACTTATCTTTAGTGTTCTT : GTGACATTGATGCTTTATTTGGTTGGCCTGAACTCACGTGCAAAGAGTTCATCACTGAAACCTCATGTCTCAGGAAATCTAATCCATGACTG : GTGGTTTGGGATACAACTGAATCCTGAATTCATGGGCATTGATCTCAA : ATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG : CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC : ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG : GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG : GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG : GGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAG : CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGTTTGTCCACGTTGCTTGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGCACTACCCAAGCATGAGAAGGGACGAACTCATGAATGAATATTACATCAAATTCGAGCTTTTGCCCTATCTATGCAGCTTTCTCATCTCCTCTACGAAAGTAATCTTTTAATCTATTTCAGTTAGGATCAACACTGTATCCAGGTTGTAACTGATTGCTTAGCTTTTGAAAGTTTTTCCAGAACCAACTTGTACACTAGATGTACTTTATCATGGCAGGATTTAAATGTGCTGCTTGTATTGAATGCCAACTATGGAATTATTTTTCATGGTTTGTAATCTTGGAGCAGCTTACTAATGTGTGCTGAAATTTTCGAATGATTTTCCCGACTTTCTAGTTTTTTGTATGCACCTTGACTAATTTCAGGAGATATTTGCTACGTTCCACCAG</gDNA_template>
            <first_frame> S  I  I  S  S  F  L  S  L  H  H  G  L  R :   C  L  C  *  S  D  F  F  S  I  *  L  P  L  D  L  F  Y  P  E  N  L  F  L  G  R  L  Y  L  M  E  L  D  S  I  I  V  A  M  :  V  Y  Y  H  F  C  C  W  F  C  F  L  E  L  G  R  R  *  I  L  F  H  L  L :   L  *  Q  I  E  D  L  S  F  C  P  Q  H  L  S  L  V  F  L :   *  H  *  C  F  I  W  L  A  *  T  H  V  Q  R  V  H  H  *  N  L  M  S  Q  E  I  *  S  M  T   : G  G  L  G  Y  N  *  I  L  N  S  W  A  L  I  S   : N  F  S  L  L  E  L  V  *  W  D  G  Y  L  S  I  F  Q  F  L  Q  N  V  L  *  R  L  N  *  A  N  Q  *  F  S  T  S  Y  F  V  G :   S  T  S  L  T  T  S  S  M  K  S  S  *  P  P   : H  G  I  *  *  Q  R  G  W  A  T  C  W  F  L  V  I  *  S  L  Y  R  S  P  S  V  F  R :   V  G  G  F  *  V  T  K  W  S  *  Q  Q  Q  Q  *  L  P  I  A  S  S  F  L  L   : G  T  R  C  S  E  E  P  I  S  R  S  M  Y  L  K  R  I  P  R  H  P  Y  G  V  V  L  Q  K  L  L  G  E  S  C  L  L  L  A  I   : G  A  L  H  G  T  V  I  T  S  G  I  C  C  W  H  R  L  L  V  Y  L  V  V  *   : A  L  W  F  H  T  F  T  P  Y  I  F  S  F  Y  S  Y  G  G  R  E  G  T  K  L  D  V  Q  R  S  T  K  M  C  G  L  N  T  V  N  L  F  L  T  G  S  Y  L  T  F  T  S  S  I  V  C  P  R  C  L  C  I  R  V  R  I  S  L  T  V  P  H  Y  P  S  M  R  R  D  E  L  M  N  E  Y  Y  I  K  F  E  L  L  P  Y  L  C  S  F  L  I  S  S  T  K  V  I  F  *  S  I  S  V  R  I  N  T  V  S  R  L  *  L  I  A  *  L  L  K  V  F  P  E  P  T  C  T  L  D  V  L  Y  H  G  R  I  *  M  C  C  L  Y  *  M  P  T  M  E  L  F  F  M  V  C  N  L  G  A  A  Y  *  C  V  L  K  F  S  N  D  F  P  D  F  L  V  F  C  M  H  L  D  *  F  Q  E  I  F  A  T  F  H  Q </first_frame>
            <second_frame>  Q  *  S  L  H  F  S  H  S  I  M  D  F   : G  V  Y  V  D  R  I  F  S  L  F  S  Y  R  W  I  Y  S  T  R  K  T  C  S  W  G  D  F  I  *  W  N  S  T  P  L  S  L  Q  W :   F  I  I  T  S  V  V  G  F  A  S  W  S  W  V  A  D  E  S  C  F  T  Y   : C  Y  S  R  *  R  T  *  A  F  V  H  N  T  Y  L  *  C  S   : C  D  I  D  A  L  F  G  W  P  E  L  T  C  K  E  F  I  T  E  T  S  C  L  R  K  S  N  P  *  L  :  V  V  W  D  T  T  E  S  *  I  H  G  H  *  S  Q  :  I  F  L  C  *  S  W  Y  D  G  M  V  T  Y  Q  S  F  S  S  C  K  M  C  C  R  G  *  I  E  P  I  N  D  S  L  P  A  I  L  W   : A  L  H  P  *  L  L  L  L  *  R  V  H  D  L  H  :  M  G  Y  N  S  R  E  V  G  L  H  A  G  F  W  *  S  S  L  Y  T  V  H  L  Q  Y  S   : G  L  V  A  F  E  *  Q  S  G  A  N  N  S  S  N  N  C  Q  L  P  R  L  S  Y  W  :  V  L  G  V  Q  R  S  Q  *  A  E  A  C  I  *  K  G  S  Q  G  T  H  M  G  *  S  S  K  S  Y  W  G  K  V  A  C  F  W  L  L  :  G  H  C  T  A  L  *  L  P  R  G  F  V  A  G  I  V  F  *  F  T  L  W  Y  K  :  L  C  G  S  I  L  L  P  H  I  S  S  H  S  T  H  M  E  G  E  K  G  R  S  *  M  C  R  E  V  Q  R  C  V  G  *  I  P  *  T  C  S  L  Q  D  L  T  L  R  L  L  A  Q  S  F  V  H  V  A  C  A  L  E  S  E  L  A  S  L  Y  R  T  T  Q  A  *  E  G  T  N  S  *  M  N  I  T  S  N  S  S  F  C  P  I  Y  A  A  F  S  S  P  L  R  K  *  S  F  N  L  F  Q  L  G  S  T  L  Y  P  G  C  N  *  L  L  S  F  *  K  F  F  Q  N  Q  L  V  H  *  M  Y  F  I  M  A  G  F  K  C  A  A  C  I  E  C  Q  L  W  N  Y  F  S  W  F  V  I  L  E  Q  L  T  N  V  C  *  N  F  R  M  I  F  P  T  F  *  F  F  V  C  T  L  T  N  F  R  R  Y  L  L  R  S  T   </second_frame>
            <third_frame>   N  N  L  F  I  S  L  T  P  S  W  T  S  :  V  S  M  L  I  G  F  F  L  Y  L  A  T  V  G  S  I  L  P  G  K  L  V  P  G  A  T  L  S  D  G  T  R  L  H  Y  R  C  N   : G  L  L  S  L  L  L  L  V  L  L  L  G  V  G  S  Q  M  N  L  V  S  P  T  :  A  I  A  D  R  G  L  E  L  L  S  T  T  L  I  F  S  V  L  :  V  T  L  M  L  Y  L  V  G  L  N  S  R  A  K  S  S  S  L  K  P  H  V  S  G  N  L  I  H  D  W :   W  F  G  I  Q  L  N  P  E  F  M  G  I  D  L  K :   F  F  F  V  R  A  G  M  M  G  W  L  L  I  N  L  S  V  L  A  K  C  V  V  E  A  K  L  S  Q  S  M  I  L  Y  Q  L  F  C  G  :  L  Y  I  L  D  Y  F  F  Y  E  E  F  M  T  S  T :   W  D  I  I  A  E  R  L  G  Y  M  L  V  F  G  D  L  V  F  I  P  F  T  F  S  I  Q  :  G  W  W  L  L  S  N  K  V  E  L  T  T  A  A  I  I  A  N  C  L  V  F  L  I  G :   Y  S  V  F  R  G  A  N  K  Q  K  H  V  F  K  K  D  P  K  A  P  I  W  G  S  P  P  K  V  I  G  G  K  L  L  A  S  G  Y  W :   G  I  A  R  H  C  N  Y  L  G  D  L  L  L  A  S  S  F  S  L  P  C  G  I  S :   S  V  V  P  Y  F  Y  P  I  Y  L  L  I  L  L  I  W  R  E  R  R  D  E  A  R  C  A  E  K  Y  K  D  V  W  A  E  Y  R  K  L  V  P  Y  R  I  L  P  Y  V  Y  *  L  N  R  L  S  T  L  L  V  H  *  S  Q  N  *  P  H  C  T  A  L  P  K  H  E  K  G  R  T  H  E  *  I  L  H  Q  I  R  A  F  A  L  S  M  Q  L  S  H  L  L  Y  E  S  N  L  L  I  Y  F  S  *  D  Q  H  C  I  Q  V  V  T  D  C  L  A  F  E  S  F  S  R  T  N  L  Y  T  R  C  T  L  S  W  Q  D  L  N  V  L  L  V  L  N  A  N  Y  G  I  I  F  H  G  L  *  S  W  S  S  L  L  M  C  A  E  I  F  E  *  F  S  R  L  S  S  F  L  Y  A  P  *  L  I  S  G  D  I  C  Y  V  P  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11943" stop="11981"/>
                    <exon start="12080" stop="12197"/>
                    <exon start="13079" stop="13149"/>
                    <exon start="13977" stop="14033"/>
                    <exon start="14180" stop="14271"/>
                    <exon start="15042" stop="15089"/>
                    <exon start="15595" stop="15715"/>
                    <exon start="15805" stop="15851"/>
                    <exon start="16912" stop="16993"/>
                    <exon start="18716" stop="18792"/>
                    <exon start="18936" stop="19055"/>
                    <exon start="19333" stop="19407"/>
                    <exon start="19495" stop="19648"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNLFISLTPSWTSVSMLIGFFLYLATVGSILPGKLVPGATLSDGTRLHYRCNGLLSLLLLVLLLGVGSQMNLVSPTAIADRGLELLSTTLIFSVLVTLMLYLVGLNSRAKSSSLKPHVSGNLIHDWWFGIQLNPEFMGIDLKFFFVRAGMMGWLLINLSVLAKCVVEAKLSQSMILYQLFCGLYILDYFFYEEFMTSTWDIIAERLGYMLVFGDLVFIPFTFSIQGWWLLSNKVELTTAAIIANCLVFLIGYSVFRGANKQKHVFKKDPKAPIWGSPPKVIGGKLLASGYWGIARHCNYLGDLLLASSFSLPCGISSVVPYFYPIYLLILLIWRERRDEARCAEKYKDVWAEYRKLVPYRILPYVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15073" e_stop="15089"/>
            <exon e_start="15595" e_stop="15715"/>
            <exon e_start="15805" e_stop="15851"/>
            <exon e_start="16912" e_stop="16993"/>
            <exon e_start="18716" e_stop="18792"/>
            <exon e_start="18936" e_stop="19055"/>
            <exon e_start="19333" e_stop="19407"/>
            <exon e_start="19495" e_stop="19933"/>
            <exon e_start="20097" e_stop="20110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.989" e_score="0.992"/>
          <exon-intron don_prob="0.957" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.001" e_score="0.973"/>
          <exon-intron don_prob="0.000" acc_prob="0.828" e_score="0.945"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15073" e_stop="15089" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.760">
            <gDNA_intron_boundary i_start="15090" i_stop="15594" i_length="505"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="15595" e_stop="15715" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.942" acc_prob="0.989">
            <gDNA_intron_boundary i_start="15716" i_stop="15804" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15805" e_stop="15851" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15852" i_stop="16911" i_length="1060"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16912" e_stop="16993" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16994" i_stop="18715" i_length="1722"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18716" e_stop="18792" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.811">
            <gDNA_intron_boundary i_start="18793" i_stop="18935" i_length="143"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="18936" e_stop="19055" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="19056" i_stop="19332" i_length="277"/>
          </intron>
          <exon e_serial="7" e_score="0.973">
            <gDNA_exon_boundary e_start="19333" e_stop="19407" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.001">
            <gDNA_intron_boundary i_start="19408" i_stop="19494" i_length="87"/>
          </intron>
          <exon e_serial="8" e_score="0.945">
            <gDNA_exon_boundary e_start="19495" e_stop="19933" e_length="439"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.828">
            <gDNA_intron_boundary i_start="19934" i_stop="20096" i_length="163"/>
          </intron>
          <exon e_serial="9" e_score="0.571">
            <gDNA_exon_boundary e_start="20097" e_stop="20110" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15073" stop="15089"/>
              <exon start="15595" stop="15715"/>
              <exon start="15805" stop="15851"/>
              <exon start="16912" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19055"/>
              <exon start="19333" stop="19354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M518-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16923" stop="16993"/>
              <exon start="18716" stop="18792"/>
              <exon start="18936" stop="19055"/>
              <exon start="19333" stop="19407"/>
              <exon start="19495" stop="19933"/>
              <exon start="20097" stop="20110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8007-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGGGCATTGATCTCAA : ATTTTTCTTTGTTAGAGCTGGTATGATGGGATGGTTACTTATCAATCTTTCAGTTCTTGCAAAATGTGTTGTAGAGGCTAAATTGAGCCAATCAATGATTCTCTACCAGCTATTTTGTGGG : CTCTACATCCTTGACTACTTCTTCTATGAAGAGTTCATGACCTCCAC : ATGGGATATAATAGCAGAGAGGTTGGGCTACATGCTGGTTTTTGGTGATCTAGTCTTTATACCGTTCACCTTCAGTATTCAG : GGTTGGTGGCTTTTGAGTAACAAAGTGGAGCTAACAACAGCAGCAATAATTGCCAATTGCCTCGTCTTTCTTATTGG : GTACTCGGTGTTCAGAGGAGCCAATAAGCAGAAGCATGTATTTAAAAAGGATCCCAAGGCACCCATATGGGGTAGTCCTCCAAAAGTTATTGGGGGAAAGTTGCTTGCTTCTGGCTATTG : GGGCATTGCACGGCACTGTAATTACCTCGGGGATTTGTTGCTGGCATCGTCTTTTAGTTTACCTTGTGGTATAAG : CTCTGTGGTTCCATACTTTTACCCCATATATCTTCTCATTCTACTCATATGGAGGGAGAGAAGGGACGAAGCTAGATGTGCAGAGAAGTACAAAGATGTGTGGGCTGAATACCGTAAACTTGTTCCTTACAGGATCTTACCTTACGTTTACTAGCTCAATCGTTTGTCCACGTTGCTTGTGCATTAGAGTCAGAATTAGCCTCACTGTACCGCACTACCCAAGCATGAGAAGGGACGAACTCATGAATGAATATTACATCAAATTCGAGCTTTTGCCCTATCTATGCAGCTTTCTCATCTCCTCTACGAAAGTAATCTTTTAATCTATTTCAGTTAGGATCAACACTGTATCCAGGTTGTAACTGATTGCTTAGCTTTTGAAAGTTTTTCCAGAACCAACTTGTACACTAGATGTACTTTATCATGGCAGGATTTAAAT : GCAACATGTATATG</gDNA_template>
            <first_frame> M  G  I  D  L  K :   F  F  F  V  R  A  G  M  M  G  W  L  L  I  N  L  S  V  L  A  K  C  V  V  E  A  K  L  S  Q  S  M  I  L  Y  Q  L  F  C  G  :  L  Y  I  L  D  Y  F  F  Y  E  E  F  M  T  S  T :   W  D  I  I  A  E  R  L  G  Y  M  L  V  F  G  D  L  V  F  I  P  F  T  F  S  I  Q  :  G  W  W  L  L  S  N  K  V  E  L  T  T  A  A  I  I  A  N  C  L  V  F  L  I  G :   Y  S  V  F  R  G  A  N  K  Q  K  H  V  F  K  K  D  P  K  A  P  I  W  G  S  P  P  K  V  I  G  G  K  L  L  A  S  G  Y  W :   G  I  A  R  H  C  N  Y  L  G  D  L  L  L  A  S  S  F  S  L  P  C  G  I  S :   S  V  V  P  Y  F  Y  P  I  Y  L  L  I  L  L  I  W  R  E  R  R  D  E  A  R  C  A  E  K  Y  K  D  V  W  A  E  Y  R  K  L  V  P  Y  R  I  L  P  Y  V  Y  *  L  N  R  L  S  T  L  L  V  H  *  S  Q  N  *  P  H  C  T  A  L  P  K  H  E  K  G  R  T  H  E  *  I  L  H  Q  I  R  A  F  A  L  S  M  Q  L  S  H  L  L  Y  E  S  N  L  L  I  Y  F  S  *  D  Q  H  C  I  Q  V  V  T  D  C  L  A  F  E  S  F  S  R  T  N  L  Y  T  R  C  T  L  S  W  Q  D  L  N  :  A  T  C  I   </first_frame>
            <second_frame>  W  A  L  I  S   : N  F  S  L  L  E  L  V  *  W  D  G  Y  L  S  I  F  Q  F  L  Q  N  V  L  *  R  L  N  *  A  N  Q  *  F  S  T  S  Y  F  V  G :   S  T  S  L  T  T  S  S  M  K  S  S  *  P  P   : H  G  I  *  *  Q  R  G  W  A  T  C  W  F  L  V  I  *  S  L  Y  R  S  P  S  V  F  R :   V  G  G  F  *  V  T  K  W  S  *  Q  Q  Q  Q  *  L  P  I  A  S  S  F  L  L   : G  T  R  C  S  E  E  P  I  S  R  S  M  Y  L  K  R  I  P  R  H  P  Y  G  V  V  L  Q  K  L  L  G  E  S  C  L  L  L  A  I   : G  A  L  H  G  T  V  I  T  S  G  I  C  C  W  H  R  L  L  V  Y  L  V  V  *   : A  L  W  F  H  T  F  T  P  Y  I  F  S  F  Y  S  Y  G  G  R  E  G  T  K  L  D  V  Q  R  S  T  K  M  C  G  L  N  T  V  N  L  F  L  T  G  S  Y  L  T  F  T  S  S  I  V  C  P  R  C  L  C  I  R  V  R  I  S  L  T  V  P  H  Y  P  S  M  R  R  D  E  L  M  N  E  Y  Y  I  K  F  E  L  L  P  Y  L  C  S  F  L  I  S  S  T  K  V  I  F  *  S  I  S  V  R  I  N  T  V  S  R  L  *  L  I  A  *  L  L  K  V  F  P  E  P  T  C  T  L  D  V  L  Y  H  G  R  I  *  M :   Q  H  V  Y  </second_frame>
            <third_frame>   G  H  *  S  Q  :  I  F  L  C  *  S  W  Y  D  G  M  V  T  Y  Q  S  F  S  S  C  K  M  C  C  R  G  *  I  E  P  I  N  D  S  L  P  A  I  L  W   : A  L  H  P  *  L  L  L  L  *  R  V  H  D  L  H  :  M  G  Y  N  S  R  E  V  G  L  H  A  G  F  W  *  S  S  L  Y  T  V  H  L  Q  Y  S   : G  L  V  A  F  E  *  Q  S  G  A  N  N  S  S  N  N  C  Q  L  P  R  L  S  Y  W  :  V  L  G  V  Q  R  S  Q  *  A  E  A  C  I  *  K  G  S  Q  G  T  H  M  G  *  S  S  K  S  Y  W  G  K  V  A  C  F  W  L  L  :  G  H  C  T  A  L  *  L  P  R  G  F  V  A  G  I  V  F  *  F  T  L  W  Y  K  :  L  C  G  S  I  L  L  P  H  I  S  S  H  S  T  H  M  E  G  E  K  G  R  S  *  M  C  R  E  V  Q  R  C  V  G  *  I  P  *  T  C  S  L  Q  D  L  T  L  R  L  L  A  Q  S  F  V  H  V  A  C  A  L  E  S  E  L  A  S  L  Y  R  T  T  Q  A  *  E  G  T  N  S  *  M  N  I  T  S  N  S  S  F  C  P  I  Y  A  A  F  S  S  P  L  R  K  *  S  F  N  L  F  Q  L  G  S  T  L  Y  P  G  C  N  *  L  L  S  F  *  K  F  F  Q  N  Q  L  V  H  *  M  Y  F  I  M  A  G  F  K   : C  N  M  Y  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15073" stop="15089"/>
                    <exon start="15595" stop="15715"/>
                    <exon start="15805" stop="15851"/>
                    <exon start="16912" stop="16993"/>
                    <exon start="18716" stop="18792"/>
                    <exon start="18936" stop="19055"/>
                    <exon start="19333" stop="19407"/>
                    <exon start="19495" stop="19648"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGIDLKFFFVRAGMMGWLLINLSVLAKCVVEAKLSQSMILYQLFCGLYILDYFFYEEFMTSTWDIIAERLGYMLVFGDLVFIPFTFSIQGWWLLSNKVELTTAAIIANCLVFLIGYSVFRGANKQKHVFKKDPKAPIWGSPPKVIGGKLLASGYWGIARHCNYLGDLLLASSFSLPCGISSVVPYFYPIYLLILLIWRERRDEARCAEKYKDVWAEYRKLVPYRILPYVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19983" PGL_stop="19493"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19983" e_stop="19493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="19983" e_stop="19493" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19983" stop="19493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M518-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAAACCATGAAAAATAATTCCATAGTTGGCATTCAATACAAGCAGCACATTTAAATCCTGCCATGATAAAGTACATCTAGTGTACAAGTTGGTTCTGGAAAAACTTTCAAAAGCTAAGCAATCAGTTACAACCTGGATACAGTGTTGATCCTAACTGAAATAGATTAAAAGATTACTTTCGTAGAGGAGATGAGAAAGCTGCATAGATAGGGCAAAAGCTCGAATTTGATGTAATATTCATTCATGAGTTCGTCCCTTCTCATGCTTGGGTAGTGCGGTACAGTGAGGCTAATTCTGACTCTAATGCACAAGCAACGTGGACAAACGATTGAGCTAGTAAACGTAAGGTAAGATCCTGTAAGGAACAAGTTTACGGTATTCAGCCCACACATCTTTGTACTTCTCTGCACATCTAGCTTCGTCCCTTCTCTCCCTCCATATGAGTAGAATGAGAAGATATATGGGGTAAAAGTATGGAACCACAGAGCT</gDNA_template>
            <first_frame> Y  K  P  *  K  I  I  P  *  L  A  F  N  T  S  S  T  F  K  S  C  H  D  K  V  H  L  V  Y  K  L  V  L  E  K  L  S  K  A  K  Q  S  V  T  T  W  I  Q  C  *  S  *  L  K  *  I  K  R  L  L  S  *  R  R  *  E  S  C  I  D  R  A  K  A  R  I  *  C  N  I  H  S  *  V  R  P  F  S  C  L  G  S  A  V  Q  *  G  *  F  *  L  *  C  T  S  N  V  D  K  R  L  S  *  *  T  *  G  K  I  L  *  G  T  S  L  R  Y  S  A  H  T  S  L  Y  F  S  A  H  L  A  S  S  L  L  S  L  H  M  S  R  M  R  R  Y  M  G  *  K  Y  G  T  T  E   </first_frame>
            <second_frame>  T  N  H  E  K  *  F  H  S  W  H  S  I  Q  A  A  H  L  N  P  A  M  I  K  Y  I  *  C  T  S  W  F  W  K  N  F  Q  K  L  S  N  Q  L  Q  P  G  Y  S  V  D  P  N  *  N  R  L  K  D  Y  F  R  R  G  D  E  K  A  A  *  I  G  Q  K  L  E  F  D  V  I  F  I  H  E  F  V  P  S  H  A  W  V  V  R  Y  S  E  A  N  S  D  S  N  A  Q  A  T  W  T  N  D  *  A  S  K  R  K  V  R  S  C  K  E  Q  V  Y  G  I  Q  P  T  H  L  C  T  S  L  H  I  *  L  R  P  F  S  P  S  I  *  V  E  *  E  D  I  W  G  K  S  M  E  P  Q  S  </second_frame>
            <third_frame>   Q  T  M  K  N  N  S  I  V  G  I  Q  Y  K  Q  H  I  *  I  L  P  *  *  S  T  S  S  V  Q  V  G  S  G  K  T  F  K  S  *  A  I  S  Y  N  L  D  T  V  L  I  L  T  E  I  D  *  K  I  T  F  V  E  E  M  R  K  L  H  R  *  G  K  S  S  N  L  M  *  Y  S  F  M  S  S  S  L  L  M  L  G  *  C  G  T  V  R  L  I  L  T  L  M  H  K  Q  R  G  Q  T  I  E  L  V  N  V  R  *  D  P  V  R  N  K  F  T  V  F  S  P  H  I  F  V  L  L  C  T  S  S  F  V  P  S  L  P  P  Y  E  *  N  E  K  I  Y  G  V  K  V  W  N  H  R  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0100J12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="86035" PGL_stop="87902"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86035" e_stop="87065"/>
            <exon e_start="87706" e_stop="87902"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.965" e_score="0.948"/>
          <exon-only e_score="0.883"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="86035" e_stop="87065" e_length="1031"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.965">
            <gDNA_intron_boundary i_start="87066" i_stop="87705" i_length="640"/>
          </intron>
          <exon e_serial="2" e_score="0.883">
            <gDNA_exon_boundary e_start="87706" e_stop="87902" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86035" stop="87065"/>
              <exon start="87706" stop="87902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7417" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTGATAAGGGTGCTCTCTCATCCCAAGCCAGTGCACAGCCTCATCCCGCCCAGTTTTCCACATCTGGGCCTAGGATACCGCCGGCCTCTGTCACTAGTCTATCAATGGACAGAAATGCTTCGAACTCTCCAAATTATTCCCAGAGAAATGTAGAACAGCCACCATTGCCACCTGGTCTGCCTCCAACTCTTGCAGGTACTGCATCATCGCAGACGCCGAATGCACCAAATATTGCTTCCAGTCCTCTTTCAAGTATTTTGAGTACATTGGTGGCGAAGGGGTTAATATCCGCATCAAAGAAGGACCCTCCTATTTATACTCCTTCAGATACACCTCCTCAAACTCAGAACCTTATTCCACCTGCAAGTTCCATTTCAACTCCTGCTTTATCTGCTCCAACATCTTCATCTGTTCCTTCTTCAGCTCATAAGGATGAACTTTCACACTCGAAACCTTCTGCTGAAACTCCTGAGGTCTTACTTCAGTCCATGAAAGAAGAGGCAAAAAGTCTCATTGGGCTTGTATTTAAGCCAGATGTGATTCGGAATTCTCATCCTGCTGTGATCAGTGACCTTGTTGATGATGTTCCACTTCAGTGTGGAATATGCGGTTTTGGATTTAAATTCCAAGTGAAACTTGATAGACACTTGGAATGGCACTCATTGAGAAATCCAGATGTCAAACTGTTGAATAATTCAAGAAAGTGGTATTTAAATTCTGGGGAATGGATTGCTGCATTTGGTGGCCTCCCTTGTGGCGATAAATCTGAAGGGCCAGCTGGAGGTTCTAGTGAGACATCAGAATGTACTGAGACCATGGTTCCTGCAGATGAATGTCAATGTGTGTGTGTTTTGTGTGGTGAGTTTTTTGAAGACTTCTACAATGAAGAAAGTGATGAATGGATGTTCAAAGATGCTGTTTACATGAGTATTCCAAGTGAAAGTGATTGTCAGGGTCCGATAGTCCACAAGAACTGTATTTCAGAAAGTTCTTGTCAAGAGTTGGGGTTTGCCTAGGATATAAAACTG : GTGTTGGATGCTTGATTTTTGTCTCTTAATCGAAGACAACCAGGTTCATTTTGAATTACTTGTAATGATTATACATCTTCTTGCTTAGTAAGCCTCTTCCATGCTTTTGTTTGAAACGACAATGAAATGGAAATTCTAGATACTAGAACAGTTTGCGCATCATATCTTCCTCAATTTGATACTTTCTGTCCACTTAC</gDNA_template>
            <first_frame> L  L  I  R  V  L  S  H  P  K  P  V  H  S  L  I  P  P  S  F  P  H  L  G  L  G  Y  R  R  P  L  S  L  V  Y  Q  W  T  E  M  L  R  T  L  Q  I  I  P  R  E  M  *  N  S  H  H  C  H  L  V  C  L  Q  L  L  Q  V  L  H  H  R  R  R  R  M  H  Q  I  L  L  P  V  L  F  Q  V  F  *  V  H  W  W  R  R  G  *  Y  P  H  Q  R  R  T  L  L  F  I  L  L  Q  I  H  L  L  K  L  R  T  L  F  H  L  Q  V  P  F  Q  L  L  L  Y  L  L  Q  H  L  H  L  F  L  L  Q  L  I  R  M  N  F  H  T  R  N  L  L  L  K  L  L  R  S  Y  F  S  P  *  K  K  R  Q  K  V  S  L  G  L  Y  L  S  Q  M  *  F  G  I  L  I  L  L  *  S  V  T  L  L  M  M  F  H  F  S  V  E  Y  A  V  L  D  L  N  S  K  *  N  L  I  D  T  W  N  G  T  H  *  E  I  Q  M  S  N  C  *  I  I  Q  E  S  G  I  *  I  L  G  N  G  L  L  H  L  V  A  S  L  V  A  I  N  L  K  G  Q  L  E  V  L  V  R  H  Q  N  V  L  R  P  W  F  L  Q  M  N  V  N  V  C  V  F  C  V  V  S  F  L  K  T  S  T  M  K  K  V  M  N  G  C  S  K  M  L  F  T  *  V  F  Q  V  K  V  I  V  R  V  R  *  S  T  R  T  V  F  Q  K  V  L  V  K  S  W  G  L  P  R  I  *  N  W :   C  W  M  L  D  F  C  L  L  I  E  D  N  Q  V  H  F  E  L  L  V  M  I  I  H  L  L  A  *  *  A  S  S  M  L  L  F  E  T  T  M  K  W  K  F  *  I  L  E  Q  F  A  H  H  I  F  L  N  L  I  L  S  V  H  L  </first_frame>
            <second_frame>  S  *  *  G  C  S  L  I  P  S  Q  C  T  A  S  S  R  P  V  F  H  I  W  A  *  D  T  A  G  L  C  H  *  S  I  N  G  Q  K  C  F  E  L  S  K  L  F  P  E  K  C  R  T  A  T  I  A  T  W  S  A  S  N  S  C  R  Y  C  I  I  A  D  A  E  C  T  K  Y  C  F  Q  S  S  F  K  Y  F  E  Y  I  G  G  E  G  V  N  I  R  I  K  E  G  P  S  Y  L  Y  S  F  R  Y  T  S  S  N  S  E  P  Y  S  T  C  K  F  H  F  N  S  C  F  I  C  S  N  I  F  I  C  S  F  F  S  S  *  G  *  T  F  T  L  E  T  F  C  *  N  S  *  G  L  T  S  V  H  E  R  R  G  K  K  S  H  W  A  C  I  *  A  R  C  D  S  E  F  S  S  C  C  D  Q  *  P  C  *  *  C  S  T  S  V  W  N  M  R  F  W  I  *  I  P  S  E  T  *  *  T  L  G  M  A  L  I  E  K  S  R  C  Q  T  V  E  *  F  K  K  V  V  F  K  F  W  G  M  D  C  C  I  W  W  P  P  L  W  R  *  I  *  R  A  S  W  R  F  *  *  D  I  R  M  Y  *  D  H  G  S  C  R  *  M  S  M  C  V  C  F  V  W  *  V  F  *  R  L  L  Q  *  R  K  *  *  M  D  V  Q  R  C  C  L  H  E  Y  S  K  *  K  *  L  S  G  S  D  S  P  Q  E  L  Y  F  R  K  F  L  S  R  V  G  V  C  L  G  Y  K  T   : G  V  G  C  L  I  F  V  S  *  S  K  T  T  R  F  I  L  N  Y  L  *  *  L  Y  I  F  L  L  S  K  P  L  P  C  F  C  L  K  R  Q  *  N  G  N  S  R  Y  *  N  S  L  R  I  I  S  S  S  I  *  Y  F  L  S  T  Y </second_frame>
            <third_frame>   L  D  K  G  A  L  S  S  Q  A  S  A  Q  P  H  P  A  Q  F  S  T  S  G  P  R  I  P  P  A  S  V  T  S  L  S  M  D  R  N  A  S  N  S  P  N  Y  S  Q  R  N  V  E  Q  P  P  L  P  P  G  L  P  P  T  L  A  G  T  A  S  S  Q  T  P  N  A  P  N  I  A  S  S  P  L  S  S  I  L  S  T  L  V  A  K  G  L  I  S  A  S  K  K  D  P  P  I  Y  T  P  S  D  T  P  P  Q  T  Q  N  L  I  P  P  A  S  S  I  S  T  P  A  L  S  A  P  T  S  S  S  V  P  S  S  A  H  K  D  E  L  S  H  S  K  P  S  A  E  T  P  E  V  L  L  Q  S  M  K  E  E  A  K  S  L  I  G  L  V  F  K  P  D  V  I  R  N  S  H  P  A  V  I  S  D  L  V  D  D  V  P  L  Q  C  G  I  C  G  F  G  F  K  F  Q  V  K  L  D  R  H  L  E  W  H  S  L  R  N  P  D  V  K  L  L  N  N  S  R  K  W  Y  L  N  S  G  E  W  I  A  A  F  G  G  L  P  C  G  D  K  S  E  G  P  A  G  G  S  S  E  T  S  E  C  T  E  T  M  V  P  A  D  E  C  Q  C  V  C  V  L  C  G  E  F  F  E  D  F  Y  N  E  E  S  D  E  W  M  F  K  D  A  V  Y  M  S  I  P  S  E  S  D  C  Q  G  P  I  V  H  K  N  C  I  S  E  S  S  C  Q  E  L  G  F  A  *  D  I  K  L  :  V  L  D  A  *  F  L  S  L  N  R  R  Q  P  G  S  F  *  I  T  C  N  D  Y  T  S  S  C  L  V  S  L  F  H  A  F  V  *  N  D  N  E  M  E  I  L  D  T  R  T  V  C  A  S  Y  L  P  Q  F  D  T  F  C  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0100J12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86037" stop="87053"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDKGALSSQASAQPHPAQFSTSGPRIPPASVTSLSMDRNASNSPNYSQRNVEQPPLPPGLPPTLAGTASSQTPNAPNIASSPLSSILSTLVAKGLISASKKDPPIYTPSDTPPQTQNLIPPASSISTPALSAPTSSSVPSSAHKDELSHSKPSAETPEVLLQSMKEEAKSLIGLVFKPDVIRNSHPAVISDLVDDVPLQCGICGFGFKFQVKLDRHLEWHSLRNPDVKLLNNSRKWYLNSGEWIAAFGGLPCGDKSEGPAGGSSETSECTETMVPADECQCVCVLCGEFFEDFYNEESDEWMFKDAVYMSIPSESDCQGPIVHKNCISESSCQELGFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 12 chains have been computed
$ 
$ memory statistics:
$ 12544 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2090 bytes was the average size of a spliced alignment
$ 9944 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2486 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 12 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-07 09:00:37
-->
