<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-10 19:49:30"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0168F14-stsqQ/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-emA9Iq/sgn_marker_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-emA9Iq/sgn_marker_seqs" ref_id="SGN-M1795" ref_strand="+" ref_description="SGN-M1795 T1148 [cos_markers]">
      <seq>atgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtgagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtgtcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaaggtaagctctgtgcttagatgtaaacttgattttcttcaactgatgctatttggtattttgaacactaatatttgtggttccactagttagtcaacttggcattaaactagctgtgttacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-stsqQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0168F14.2" temp_strand="-" temp_description="C09HBa0168F14.2  EF647606.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0168F14 upload_account_name:spain">
        <position start="6890" stop="4619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6590" g_stop="6341" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6340" i_stop="5246" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5245" g_stop="4919" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="577" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.2" gen_strand="-" ref_id="SGN-M1795" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6590" e_stop="6341"/>
          <exon e_start="5245" e_stop="4919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACA</genome_strand>
        <mrna_strand>ATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTGAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTGTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGGTAAGCTCTGTGCTTAGATGTAAACTTGATTTTCTTCAACTGATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-emA9Iq/sgn_marker_seqs" ref_id="SGN-M8566" ref_strand="+" ref_description="SGN-M8566 C2_At5g03940 [cosii_markers]">
      <seq>aagaaaaaagcttcaatttttgcttcttcttttgattgtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaggaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactaaaatctgaacagcaggctcctcccggtactgcaaggaggaagcgaaggtcagaaccaaggaaacaatttgcagactcgggatcagctaggcctagccctcgtggtttcggggccaagaactgaagtataagactagtatgtcaaacaaatttttgaatctttgactagctatctatgagtatcaactagaaaaaggaattgtgagcaaaaaaggaaatgatcaactagaaaagggaagttcttgacaagataatatatagtacattgtatgtactctcaactatatagttttgtccctcttcttgtgtaactattgtcttcttgatatatcttattatcttgtaatcttgaaaatttcattgtttttcccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-stsqQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0168F14.2" temp_strand="-" temp_description="C09HBa0168F14.2  EF647606.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0168F14 upload_account_name:spain">
        <position start="31397" stop="23693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31097" g_stop="30876" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="352" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="420" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="522" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28516" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="675" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="753" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28064" g_stop="27939" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="879" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27859" g_stop="27757" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="880" r_stop="982" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26840" g_stop="26740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="983" r_stop="1083" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="26118" g_stop="25981" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1084" r_stop="1221" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25891" g_stop="25748" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1222" r_stop="1365" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="25482" g_stop="25407" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1366" r_stop="1441" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="25137" g_stop="25052" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1442" r_stop="1527" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="24941" g_stop="24816" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1528" r_stop="1653" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="24815" i_stop="24349" i_length="467">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="24348" g_stop="23984" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1654" r_stop="2018" r_length="365" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.2" gen_strand="-" ref_id="SGN-M8566" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2018</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31097" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28064" e_stop="27939"/>
          <exon e_start="27859" e_stop="27757"/>
          <exon e_start="26840" e_stop="26740"/>
          <exon e_start="26118" e_stop="25981"/>
          <exon e_start="25891" e_stop="25748"/>
          <exon e_start="25482" e_stop="25407"/>
          <exon e_start="25137" e_stop="25052"/>
          <exon e_start="24941" e_stop="24816"/>
          <exon e_start="24348" e_stop="23984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAGGTGCCTATCTTGTCTAAATTTTTGGCTTAATTACTTGTTATCAAATTAGAATGTGTGGATATAGCAGTCAGTTCCAATTTTGAGCTCCTTACCTCCTTACTATGCTGTAATCATTTCTTCTTACATATTAGTCGTGGCGCGCACAAACAGGCCCCAAACACCATACTTATCGGGGAAAAAAAGAGTTCTTACATAGTGTTTCTTTTCTCTTCCAATATGCCTTCAAGATTGTAAATTCCACTTGTTCGAGGATATGCTAATACATCTGTTCGATCTAATACACATTTCTATTGTATGAGATGTAGAAACCTATTCTACTATGCATTTGTTTTTTTGACTGGACTTATACTCGAAAAGTGCATGTTTGTCATGTATTCTTAGATTTGCACTTCTGTTATCTTATCATTCATTAGCTCTAACTTAAGCTGATGGATTCGAATGGTCATCTTGTTCCCTTCTTTCTTCAGGCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCACTCCTTTAA</genome_strand>
        <mrna_strand>AAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-emA9Iq/sgn_marker_seqs" ref_id="SGN-M8566-2" ref_strand="+" ref_description="SGN-M8566-2 C2_At5g03940-2 [cosii_markers]">
      <seq>gaaaaaagcttcaatttttactcccattttcttcttctgattgtttgttctttaatccaccatggaagccactgcttctttctcttcaactatggcttctcaccatttctttccactttctaaagccaccctttcaacttccaaacttaaccccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggttactataagaagggaaatgcgtggagttattagagctgagatgtttggacagcttactagtggacttgaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacattgtggaacctatgagagacatcaggagggctcttttagaagctgatgttagtctccctgttgtcagaaggtttgttcagtctgttagtgaagaagccgttgggactggcttgattcgaggagtaaagcctgatcagcaactagttaaaattgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaaacccaccgtaatactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-stsqQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0168F14.2" temp_strand="-" temp_description="C09HBa0168F14.2  EF647606.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0168F14 upload_account_name:spain">
        <position start="31395" stop="28284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31074" g_stop="30876" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="226" r_length="198" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="362" r_length="136" r_score="0.862"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="430" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="532" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28584" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="617" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.2" gen_strand="-" ref_id="SGN-M8566-2" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8566-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31074" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGG------TAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTAT</genome_strand>
        <mrna_strand>TTCTTCTTCTGATTGTTTGTTCTTTAATCC-ACCATGGAAGCCACTGCTTCTTTCTCTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCAACTTCCAAACTTAACCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTTACTATAAGAAGGGAAATGCGTGGAGTTATTAGAGCTGAGATGTTTGGACAGCTTACTAGTGGACTTGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATTGTGGAACCTATGAGAGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCTGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGGACTGGCTTGATTCGAGGAGTAAAGCCTGATCAGCAACTAGTTAAA..............................................................................................................................................ATTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAACCCACCGTAATACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-emA9Iq/sgn_marker_seqs" ref_id="SGN-M8002" ref_strand="+" ref_description="SGN-M8002 C2_At3g52610 [cosii_markers]">
      <seq>tctcagtaatggctgagcaaggaagcgccgccgcagctccgtcgtctgagttgaaaagtcggccggccggaagcaccgagcacagctggtgcaaggcggttcccggtggcacaggtataacagtcttagctctactcttgtcaaaaccaccagacatttcacttctccaaaatgcccttcacaaactccaaaattccaatcctatcctcaaatctcaactccattacgaatcaagcacaaattcctactcttacatcattccctccacttctcatcttcaaatccagccgttcgatctctcatcaacggttcagattctccgacgcctcaaaacctccgatctcacctccgtctccgattttcatctcatcctcgaacacgaaatcaaccacaactcatggatgaacaccggcacttcatcagattccgacacggatatcttcttcgccagcatttatcaattagaaaacgaaaaatcggtgttcgctttaaggattcatacatcggtgtgtgatcgggcggctgcattggcggtgctgaagaagttattgaagctggtgagttgtgagaaggaagatgaagaagggacagaattggaaatattgaaaaagatggaggttggtttggggattgaagagtatattccagatggtaaagcgagtaaaccattttgggcgcgtgggattgatatggtggggtatggtttgaattcattgagattttgtaatttgaagtttatggattcggaatcaacgagaggatcacaagttgtgaaattgcagttgaataaacaagagactgatcacattcttgatggctgtaaaacgagaggtataaaactgtgtggactattggctgctgctggattaattgcagctcattccttaaaaggcctaaaggagaatcaatgggagaagtatgcaattgtaacccttattaactgccgttcaattcttgatccagtgcttagccctgattttccaggcttttatcattctgccatcctcaacacgcatgacgttaagggaggagatgacttatgggagctagcaaagagaagttacacatcttttatcaacgccaagaacaataacaagcatttcacagacatgggagacctgaatttcctcatgtgcagggccattgataatcccggcttaactccatcctcttcacttagaacttctctgatctccgtgtttgaagacactgtgatcgatacctccagcacaatgcatcaagaaatcggattacaagacttcatcgggtgtgcatccgtgcatggggtaggcccttctattgccatattcgacacaatcagggacaggacatttggattgtgcatgtgtttatcccttccccttgcatactagagagcaaatacaggagctcattggtgaaatgaaaaaaatccttattgactgctagtatattactaaaacaagacactatattctcccactcatcatgttcaatgaaaatgcagtaagttggtcgtttttgacaaatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-stsqQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0168F14.2" temp_strand="-" temp_description="C09HBa0168F14.2  EF647606.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0168F14 upload_account_name:spain">
        <position start="60995" stop="55700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60695" g_stop="59881" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59880" i_stop="58055" i_length="1826">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58054" g_stop="57886" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="984" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57885" i_stop="56520" i_length="1366">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56519" g_stop="55991" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="985" r_stop="1515" r_length="531" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.2" gen_strand="-" ref_id="SGN-M8002" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1513</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60695" e_stop="59881"/>
          <exon e_start="58054" e_stop="57886"/>
          <exon e_start="56519" e_stop="55991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGTAATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGATGTAAGTTCTTCGCATTTTAGTAAATTTCTTACCTTTTTACGCATCTCGATTAATTTCATTTTATTTATGATTTTGTTCATCGAGACTTGATTAGATAAGAAGAAATCACATAGCACTTGTTAAGTCTTTGATAGTTTTTTTTGACAACACATTAATTTTAAACTTTTGCGCTTATTTCTTTTTTTTATAAATTTTATGTTTATTAAGGCTTGATTAGATAAGAAGAGATCACATACTCACTCGTTTCAATTTGTTTATTTTGTTATCTTTTTAGTCGTTTCAAATAAGAACGACTCTTTTTTCTTTTTTGGTTGACCTCTCATTAATTTTATTTTTCATGTGATATGTTTACTCACAAGATTAAAAGTTATTTTGATATATTTTATATATCTTTAATTTAAAATGATAGGAATCGATTTCTAAAACTATATTTTAAATTATAATCAGATAAATAAATTGAAACGGGAATAGTGTTTTTCTTAAGCTTCCTTAATTTAGAGCAAGATAGTGATATTCCTTTTTTTCTCTTTCAATAAATTTAATTGTCAGTGTGTTAAATATATATTTGATAATTGATAGAGAAACACTAATGTTTTACAAACTTAAAGAATTTAAAACTTTTAAAATACTATATTTAAGGAAGTATGTTAAGCCTATCTAAATTAAAAGGATTATTTTTGTCATTTTCTCGATGTATGGTGTGTTGTCTTTAATCATATATTTTTCTGACTTTATCATAATTAATTATAATTTCCTTAGTATTATTTGATAATGTATATTTTTCTCACTTAATCATAAATTAATTATAATATCCTTAGTGGTATATTAAAAATATGAAAATAGATATTATGGTTGAAATTTAAGTGGAGACAATACATTAGATGATTCAAATTTCTTTCTCTAGTATTGAAATCGAATTGGCAGAAAGTACCGAAAGTCGGCCTCCCGCCCTATCATCCCGTGTCTCAACCAATTTTTTTCTTGTCTCCAAATCTCTCTTTTGGCTTTTGAAACTTTGATTCGGTGCCTAAATTTTGATCGATAAAGTTATCTGGTATTTACCTAGATGGCAAATAGTAGGTATCTAATTGATAACGTTTGCAAACTGAGTTGAACATCATCGTCATACAAAAATAGATTTAAATGTCATTTTCAAATTGTCAAGTTAGGTTGACATTTTATTTTCATTTTCTTTAGAAATTAGGCAAAGCTACTCTATGAAAACTTGCTTGGCCCAATTTTCTTTTTTAGGTTAGTCTCATTTATGGCCCTCATTGAATATTCTCTTCACATGATGTCCAACTTTAATCATATTTGAATTGTGAATTGGCCAATTTGCATGCTACATCTTTCACATGACTAGAATCTGGCCTGATTGTGAGTAATGATATTACTAATTTTTCTAAAAATAACTCGTGGTGTTCGGGTCGACTAGTGGTTACCTCAGTACTTTCCATCTGCATGTGTATCAAGCAACTCTGTTCACCGAGAATGGTATAAACTAATACCGTTAAATCAAAAGATCCAATTCGGCTCAACTAAGATCAGGTTTATAGCCTGATTAATGGTTTAAATTTTATACATCGACAGTGCAAGATCACATTATTTAGAAGTTAGTTGTATGTAACTGCCTGTGATAAGTGTGTGCGACACTACAAAAATGTTGTTCGCCAATGTCAAATCTTCAAAAATTACATTACTTTATCCGAATGCACCTGAAAAACATTTTTGAAGAGTCTGAGCAACAGGTTACGACTCCCTATCTAAATGTACATTGTTTGCACTTTAGAGCATTAGAGGTAGTAACAAAATCTGAATTTTGGTAGGGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAGGTTCGTTAATGCATTCATGGTAAAAACTTACTTGTATCGGGTCTTTATATTTCTTGTACCGAGGCCTCCACTCTTGACACCCATCTAACCCCATTGGTTACTACTGTCTACTGGTATCCGATCTTTTTTTTCTTCTTTTTGGACCCAAGTTAATAATAAATGGTACCGCTACTGATGTTCTACCAGTTGGTCAAGGCTAGTACACTCTTAGGTCCAGGTAACTACTCCCAATTGATCAAGGCTAGTACACATGACAGACTCTAGAACCCCCTCTTTGATTTTCGTGCTCAAGCGTTGCTTTGATAGTAATTGTTATAGACTAAATAGAAAACCTCAGCCTATTAAGGGAGGGAGAACCTGTCAATCTATAAACTCATACGTACACTCAATCGGGAGTCAAGTATTGGTTTGCAAGGATTCCTTTTAAGGTAAATAATAGAGTTGCTATATGTGACTTGCAAGTTCGTTGCCCATTATCTATGTACTTGGAAAAGCTCAAATTACCCTTAGTCTGCTGGAAACATCCTATTAGCCCTTTTAACTTGAGCAAGTACACCATACTTCAGTAGTCAGTACCATGTGATTGTTCTTACATTTGATGTAACTCTCACTTCTGTTCAGCTTTTTCTTTTCATTGCTATTGTTGTATCTTATCAGCCTTTCTCGAGTCTTAAAACTCCGACTTCTAAACTCAAAACTGGTTTGAAATGCCCATTTTGAGCTGGTTCAGGCTGATTGTTCCCGCTTATCTAGATTTCACTAATTGTGAGCTTCTGTTATTTTGGTCATTTCGATTACTGCATTGTGATGTTTACTGAACAGAGCATGTGAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAGCAATTTTTAATTTTGGGGCTTTGATACCATGTTTAATTAGGTCTTAAGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCTAAGCCTTATAAAGAGTCCACCCATCTCATTAATCACCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCGTGGACAATTTTACGCCCAGTGCGTGGACAATTTTAATTTTGGGGACCACAACATCGGGTGAGACGGACCCAGCTCTGATACCATGTGAAATTAGGTCTTAGGCCTAACTCACACCTCAAAAGCTAGCTCAAAGAGAGGAGGATTGCCTAAGCCTTATAAAGAATTCACCCATCTCATTAATCATCGATGTGAGACTTTTGTCATTCTTTAACAGAGCATATTAAAATGATCTAAATCGTGCAGGCTTTTATCATTCTGCCATCCTCAACACGCATGACGTTAAGGGAGGAGATGACTTATGGGAGCTAGCAAAGAGAAGTTACACATCTTTTATCAACGCCAAGAACAATAACAAGCATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGGCCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTTAGAACTTCTCTGATCTCCGTGTTTGAAGACACTGTGATCGATACCTCCAGCACAATGCATCAAGAAATCGGATTAGAAGACTTCATCGGGTGTGCATCCGTGCATGGGGTAGGCCCTTCTATTGCCATATTCGACACAATCAGGGAC-GGACATTTGGATTGTGCATGTGTTTATCCCTTCCCCTTGCATACTAGAGAGCAAATACAGGAGCTCATTGGTGAAATGAAAAAAATCCTTATTGACTGCTAGTATATTACTAAAACAA-ACACTATATTTTCCCACTCATCATGTTCAATGAAAATGCAGTAAGTTGTTTGTTTTTGACATCAAAAGTT</genome_strand>
        <mrna_strand>TCTCAGTAATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTATCATTCTGCCATCCTCAACACGCATGACGTTAAGGGAGGAGATGACTTATGGGAGCTAGCAAAGAGAAGTTACACATCTTTTATCAACGCCAAGAACAATAACAAGCATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGGCCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTTAGAACTTCTCTGATCTCCGTGTTTGAAGACACTGTGATCGATACCTCCAGCACAATGCATCAAGAAATCGGATTACAAGACTTCATCGGGTGTGCATCCGTGCATGGGGTAGGCCCTTCTATTGCCATATTCGACACAATCAGGGACAGGACATTTGGATTGTGCATGTGTTTATCCCTTCCCCTTGCATACTAGAGAGCAAATACAGGAGCTCATTGGTGAAATGAAAAAAATCCTTATTGACTGCTAGTATATTACTAAAACAAGACACTATATTCTCCCACTCATCATGTTCAATGAAAATGCAGTAAGTTGGTCGTTTTTGACAAATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-emA9Iq/sgn_marker_seqs" ref_id="SGN-M8002-2" ref_strand="+" ref_description="SGN-M8002-2 C2_At3g52610-2 [cosii_markers]">
      <seq>ggtatggattgaatcatttgcgattttctaatttgaagtttatggattcggaatcaacgagaggatcacaagttgtgaaattgcagttgaataaagaagaaactgatcgcattcttgatggctgcaaaacgagagatataaaactgtgtggactgttggctgctgctggattaattgcagctcattcctcaaaaggcctaaatgagaatcaatgggagaagtatgcaattgtaacccttattaactgccgttcaattcttgatccagtgcttagccctgattttccaggcttttatcattctgccatcctcaacacgcatgacgttaagggaggagatgatttatgggagctagcaaagagaagttacacatcttttatcaacgccaagaacaataacaagcatttcacagacatgggagacctgaatttcctcatgtgcagggccattgataatcccggcttaactccatcctcttcactaaggacttctctcatctctgtgtttgaagaccctgtgattgatacctccagcacagtgcatcaagaaatcggattagaagacttcatcgggtgtgcatccgtgcatggggtaggcccttctattgccatattcgacacaattagggacggacagttggattgtgcatgtgtttatcccttccccttgcatactagggaacaaatgcaggagctcattggtgaaatgaaaaaaatccttgttgactgctagtatattactaaaacaaacattatgtttccccactgatcatgttcaatgaaaatgcaataaatttcctacaagcagtttgtttttttacaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-stsqQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0168F14.2" temp_strand="-" temp_description="C09HBa0168F14.2  EF647606.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0168F14 upload_account_name:spain">
        <position start="60299" stop="55714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59999" g_stop="59881" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59880" i_stop="58055" i_length="1826">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58054" g_stop="57886" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="288" r_length="169" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57885" i_stop="56520" i_length="1366">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56519" g_stop="56021" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="787" r_length="499" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.2" gen_strand="-" ref_id="SGN-M8002-2" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8002-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59999" e_stop="59881"/>
          <exon e_start="58054" e_stop="57886"/>
          <exon e_start="56519" e_stop="56021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGATGTAAGTTCTTCGCATTTTAGTAAATTTCTTACCTTTTTACGCATCTCGATTAATTTCATTTTATTTATGATTTTGTTCATCGAGACTTGATTAGATAAGAAGAAATCACATAGCACTTGTTAAGTCTTTGATAGTTTTTTTTGACAACACATTAATTTTAAACTTTTGCGCTTATTTCTTTTTTTTATAAATTTTATGTTTATTAAGGCTTGATTAGATAAGAAGAGATCACATACTCACTCGTTTCAATTTGTTTATTTTGTTATCTTTTTAGTCGTTTCAAATAAGAACGACTCTTTTTTCTTTTTTGGTTGACCTCTCATTAATTTTATTTTTCATGTGATATGTTTACTCACAAGATTAAAAGTTATTTTGATATATTTTATATATCTTTAATTTAAAATGATAGGAATCGATTTCTAAAACTATATTTTAAATTATAATCAGATAAATAAATTGAAACGGGAATAGTGTTTTTCTTAAGCTTCCTTAATTTAGAGCAAGATAGTGATATTCCTTTTTTTCTCTTTCAATAAATTTAATTGTCAGTGTGTTAAATATATATTTGATAATTGATAGAGAAACACTAATGTTTTACAAACTTAAAGAATTTAAAACTTTTAAAATACTATATTTAAGGAAGTATGTTAAGCCTATCTAAATTAAAAGGATTATTTTTGTCATTTTCTCGATGTATGGTGTGTTGTCTTTAATCATATATTTTTCTGACTTTATCATAATTAATTATAATTTCCTTAGTATTATTTGATAATGTATATTTTTCTCACTTAATCATAAATTAATTATAATATCCTTAGTGGTATATTAAAAATATGAAAATAGATATTATGGTTGAAATTTAAGTGGAGACAATACATTAGATGATTCAAATTTCTTTCTCTAGTATTGAAATCGAATTGGCAGAAAGTACCGAAAGTCGGCCTCCCGCCCTATCATCCCGTGTCTCAACCAATTTTTTTCTTGTCTCCAAATCTCTCTTTTGGCTTTTGAAACTTTGATTCGGTGCCTAAATTTTGATCGATAAAGTTATCTGGTATTTACCTAGATGGCAAATAGTAGGTATCTAATTGATAACGTTTGCAAACTGAGTTGAACATCATCGTCATACAAAAATAGATTTAAATGTCATTTTCAAATTGTCAAGTTAGGTTGACATTTTATTTTCATTTTCTTTAGAAATTAGGCAAAGCTACTCTATGAAAACTTGCTTGGCCCAATTTTCTTTTTTAGGTTAGTCTCATTTATGGCCCTCATTGAATATTCTCTTCACATGATGTCCAACTTTAATCATATTTGAATTGTGAATTGGCCAATTTGCATGCTACATCTTTCACATGACTAGAATCTGGCCTGATTGTGAGTAATGATATTACTAATTTTTCTAAAAATAACTCGTGGTGTTCGGGTCGACTAGTGGTTACCTCAGTACTTTCCATCTGCATGTGTATCAAGCAACTCTGTTCACCGAGAATGGTATAAACTAATACCGTTAAATCAAAAGATCCAATTCGGCTCAACTAAGATCAGGTTTATAGCCTGATTAATGGTTTAAATTTTATACATCGACAGTGCAAGATCACATTATTTAGAAGTTAGTTGTATGTAACTGCCTGTGATAAGTGTGTGCGACACTACAAAAATGTTGTTCGCCAATGTCAAATCTTCAAAAATTACATTACTTTATCCGAATGCACCTGAAAAACATTTTTGAAGAGTCTGAGCAACAGGTTACGACTCCCTATCTAAATGTACATTGTTTGCACTTTAGAGCATTAGAGGTAGTAACAAAATCTGAATTTTGGTAGGGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAGGTTCGTTAATGCATTCATGGTAAAAACTTACTTGTATCGGGTCTTTATATTTCTTGTACCGAGGCCTCCACTCTTGACACCCATCTAACCCCATTGGTTACTACTGTCTACTGGTATCCGATCTTTTTTTTCTTCTTTTTGGACCCAAGTTAATAATAAATGGTACCGCTACTGATGTTCTACCAGTTGGTCAAGGCTAGTACACTCTTAGGTCCAGGTAACTACTCCCAATTGATCAAGGCTAGTACACATGACAGACTCTAGAACCCCCTCTTTGATTTTCGTGCTCAAGCGTTGCTTTGATAGTAATTGTTATAGACTAAATAGAAAACCTCAGCCTATTAAGGGAGGGAGAACCTGTCAATCTATAAACTCATACGTACACTCAATCGGGAGTCAAGTATTGGTTTGCAAGGATTCCTTTTAAGGTAAATAATAGAGTTGCTATATGTGACTTGCAAGTTCGTTGCCCATTATCTATGTACTTGGAAAAGCTCAAATTACCCTTAGTCTGCTGGAAACATCCTATTAGCCCTTTTAACTTGAGCAAGTACACCATACTTCAGTAGTCAGTACCATGTGATTGTTCTTACATTTGATGTAACTCTCACTTCTGTTCAGCTTTTTCTTTTCATTGCTATTGTTGTATCTTATCAGCCTTTCTCGAGTCTTAAAACTCCGACTTCTAAACTCAAAACTGGTTTGAAATGCCCATTTTGAGCTGGTTCAGGCTGATTGTTCCCGCTTATCTAGATTTCACTAATTGTGAGCTTCTGTTATTTTGGTCATTTCGATTACTGCATTGTGATGTTTACTGAACAGAGCATGTGAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAGCAATTTTTAATTTTGGGGCTTTGATACCATGTTTAATTAGGTCTTAAGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCTAAGCCTTATAAAGAGTCCACCCATCTCATTAATCACCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCGTGGACAATTTTACGCCCAGTGCGTGGACAATTTTAATTTTGGGGACCACAACATCGGGTGAGACGGACCCAGCTCTGATACCATGTGAAATTAGGTCTTAGGCCTAACTCACACCTCAAAAGCTAGCTCAAAGAGAGGAGGATTGCCTAAGCCTTATAAAGAATTCACCCATCTCATTAATCATCGATGTGAGACTTTTGTCATTCTTTAACAGAGCATATTAAAATGATCTAAATCGTGCAGGCTTTTATCATTCTGCCATCCTCAACACGCATGACGTTAAGGGAGGAGATGACTTATGGGAGCTAGCAAAGAGAAGTTACACATCTTTTATCAACGCCAAGAACAATAACAAGCATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGGCCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTTAGAACTTCTCTGATCTCCGTGTTTGAAGACACTGTGATCGATACCTCCAGCACAATGCATCAAGAAATCGGATTAGAAGACTTCATCGGGTGTGCATCCGTGCATGGGGTAGGCCCTTCTATTGCCATATTCGACACAATCAGGGACGGACATTTGGATTGTGCATGTGTTTATCCCTTCCCCTTGCATACTAGAGAGCAAATACAGGAGCTCATTGGTGAAATGAAAAAAATCCTTATTGACTGCTAGTATATTACTAAAACAAACACTATATTTTCCCACTCATCATGTTCAATGAAAATGCA</genome_strand>
        <mrna_strand>GGTATGGATTGAATCATTTGCGATTTTCTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAAGAAGAAACTGATCGCATTCTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAAAACGAGAGATATAAAACTGTGTGGACTGTTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTCAAAAGGCCTAAATGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTATCATTCTGCCATCCTCAACACGCATGACGTTAAGGGAGGAGATGATTTATGGGAGCTAGCAAAGAGAAGTTACACATCTTTTATCAACGCCAAGAACAATAACAAGCATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGGCCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTAAGGACTTCTCTCATCTCTGTGTTTGAAGACCCTGTGATTGATACCTCCAGCACAGTGCATCAAGAAATCGGATTAGAAGACTTCATCGGGTGTGCATCCGTGCATGGGGTAGGCCCTTCTATTGCCATATTCGACACAATTAGGGACGGACAGTTGGATTGTGCATGTGTTTATCCCTTCCCCTTGCATACTAGGGAACAAATGCAGGAGCTCATTGGTGAAATGAAAAAAATCCTTGTTGACTGCTAGTATATTACTAAAACAAACATTATGTTTCCCCACTGATCATGTTCAATGAAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-emA9Iq/sgn_marker_seqs" ref_id="SGN-M2356" ref_strand="+" ref_description="SGN-M2356 T1908 [cos_markers]">
      <seq>tctcagtaatggctgagcaaggaagcgccgccgcagctccgtcgtctgagttgaaaagtcggccggccggaagcaccgagcacagctggtgcaaggcggttcccggtggcacaggtataacagtcttagctctactcttgtcaaaaccaccagacatttcacttctccaaaatgcccttcacaaactccaaaattccaatcctatcctcaaatctcaactccattacgaatcaagcacaaattcctactcttacatcattccctccacttctcatcttcaaatccagccgttcgatctctcatcaacggttcagattctccgacgcctcaaaacctccgatctcacctccgtctccgattttcatctcatcctcgaacacgaaatcaaccacaactcatggatgaacaccggcacttcatcagattccgacacggatatcttcttcgccagcatttatcaattagaaaacgaaaaatcggtgttcgctttaaggattcatacatcggtgtgtgatcgggcggctgcattggcggtgctgaagaagttattgaagctggtgagttgtgagaaggaagatgaagaagggacagaattggaaatattgaaaaagatggaggttggtttggggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-stsqQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0168F14.2" temp_strand="-" temp_description="C09HBa0168F14.2  EF647606.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0168F14 upload_account_name:spain">
        <position start="60995" stop="59763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60695" g_stop="60063" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.2" gen_strand="-" ref_id="SGN-M2356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60695" e_stop="60063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGTAATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTG</genome_strand>
        <mrna_strand>TCTCAGTAATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-emA9Iq/sgn_marker_seqs" ref_id="SGN-M1591" ref_strand="+" ref_description="SGN-M1591 T0765 [cos_markers]">
      <seq>aacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-stsqQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C09HBa0168F14.2" temp_strand="-" temp_description="C09HBa0168F14.2  EF647606.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0168F14 upload_account_name:spain">
        <position start="108887" stop="106122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108587" g_stop="108521" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108520" i_stop="108422" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108421" g_stop="108376" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="113" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108375" i_stop="107931" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107930" g_stop="107845" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="199" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107844" i_stop="106835" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106834" g_stop="106705" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="329" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106704" i_stop="106578" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="106577" g_stop="106422" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="485" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.2" gen_strand="-" ref_id="SGN-M1591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108587" e_stop="108521"/>
          <exon e_start="108421" e_stop="108376"/>
          <exon e_start="107930" e_stop="107845"/>
          <exon e_start="106834" e_stop="106705"/>
          <exon e_start="106577" e_stop="106422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTG</genome_strand>
        <mrna_strand>AACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6590" PGL_stop="4919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6590" e_stop="6341"/>
            <exon e_start="5245" e_stop="4919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6590" e_stop="6341" e_length="250"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6340" i_stop="5246" i_length="1095"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="5245" e_stop="4919" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6590" stop="6341"/>
              <exon start="5245" stop="4919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG : ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACA</gDNA_template>
            <first_frame> M  S  N  P  A  V  F  V  N  A  E  F  L  K  E  H  V  G  R  K  V  R  T  V  V  Q  V  M  Q  S  D  G  D  K  V  I  G  K  S  T  D  E  K  E  L  V  V  K  G  N  P  P  N  A  L  S  T  F  V  E  V  I  G  I  A  D  T  I  Q  S  I  E  A  E  I  W  T  N  F  G  D  T  F   : D  V  N  S  Y  D  K  V  C  R  L  A  N  G  D  S  K  H  L  F  I  *  E  M  I  Y  K  R  G  H  I  S  S  Y  F  C  C  I  V  P  E  F  Q  C  I  I  S  S  L  K  Y  S  *  K  L  W  I  F  S  F  Y  L  G  F  H  Q  Q  K  L  S  S  V  L  R  C  K  L  V  F  L  Q  L  M  L  F  G  I  L  N  T  N  I  C  G  S  T  S  *  S  T  W  H  *  T  S  C  V  T  Y  </first_frame>
            <second_frame>  C  Q  I  L  P  S  L  S  M  L  S  S  S  R  S  M  *  D  G  R  F  E  Q  W  F  R  L  C  N  L  M  V  I  K  S  L  E  N  P  R  M  K  K  N  *  L  *  K  E  I  H  L  M  L  F  Q  L  L  L  K  *  L  V  *  L  T  L  S  S  L  L  K  Q  K  F  G  P  I  L  V  I  H  L  :  M  L  I  A  M  T  R  C  A  D  *  Q  M  V  T  V  S  T  C  L  S  E  K  *  F  I  K  E  D  I  Y  P  L  I  S  A  A  L  F  Q  S  F  N  V  L  *  V  V  *  S  T  P  E  N  F  G  F  S  A  S  I  *  G  F  I  N  R  S  *  A  L  C  L  D  V  N  L  F  F  F  N  L  C  Y  L  V  F  *  T  L  I  F  V  V  P  L  V  S  Q  L  G  I  K  L  A  V  L  H  T </second_frame>
            <third_frame>   V  K  S  C  R  L  C  Q  C  *  V  P  Q  G  A  C  R  T  E  G  S  N  S  G  S  G  Y  A  I  *  W  *  *  S  H  W  K  I  H  G  *  K  R  I  S  C  E  R  K  S  T  *  C  S  F  N  F  C  *  S  N  W  Y  S  *  H  Y  P  V  Y  *  S  R  N  L  D  Q  F  W  *  Y  I  * :   C  *  *  L  *  Q  G  V  Q  T  S  K  W  *  Q  *  A  L  V  Y  L  R  N  D  L  *  K  R  T  Y  I  L  L  F  L  L  H  C  S  R  V  S  M  Y  Y  K  *  F  E  V  L  L  K  T  L  D  F  Q  L  L  F  R  V  S  S  T  E  V  K  L  C  A  *  M  *  T  C  F  S  S  T  Y  A  I  W  Y  F  E  H  *  Y  L  W  F  H  *  L  V  N  L  A  L  N  *  L  C  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6590" stop="6341"/>
                    <exon start="5245" stop="5181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSNPAVFVNAEFLKEHVGRKVRTVVQVMQSDGDKVIGKSTDEKELVVKGNPPNALSTFVEVIGIADTIQSIEAEIWTNFGDTFDVNSYDKVCRLANGDSKHLFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="31097" PGL_stop="23984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31097" e_stop="30876"/>
            <exon e_start="30800" e_stop="30671"/>
            <exon e_start="29053" e_stop="28986"/>
            <exon e_start="28912" e_stop="28811"/>
            <exon e_start="28668" e_stop="28516"/>
            <exon e_start="28314" e_stop="28237"/>
            <exon e_start="28064" e_stop="27939"/>
            <exon e_start="27859" e_stop="27757"/>
            <exon e_start="26840" e_stop="26740"/>
            <exon e_start="26118" e_stop="25981"/>
            <exon e_start="25891" e_stop="25748"/>
            <exon e_start="25482" e_stop="25407"/>
            <exon e_start="25137" e_stop="25052"/>
            <exon e_start="24941" e_stop="24816"/>
            <exon e_start="24348" e_stop="23984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31097" e_stop="30876" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30800" e_stop="30671" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29053" e_stop="28986" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.920">
            <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28912" e_stop="28811" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28668" e_stop="28516" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.771" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28314" e_stop="28237" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.977">
            <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28064" e_stop="27939" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27859" e_stop="27757" e_length="103"/>
          </exon>
          <intron i_serial="8" don_prob="0.872" acc_prob="0.891">
            <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26840" e_stop="26740" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.946" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26118" e_stop="25981" e_length="138"/>
          </exon>
          <intron i_serial="10" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="25891" e_stop="25748" e_length="144"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="25482" e_stop="25407" e_length="76"/>
          </exon>
          <intron i_serial="12" don_prob="0.881" acc_prob="0.948">
            <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="25137" e_stop="25052" e_length="86"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="24941" e_stop="24816" e_length="126"/>
          </exon>
          <intron i_serial="14" don_prob="0.998" acc_prob="0.868">
            <gDNA_intron_boundary i_start="24815" i_stop="24349" i_length="467"/>
          </intron>
          <exon e_serial="15" e_score="0.981">
            <gDNA_exon_boundary e_start="24348" e_stop="23984" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31097" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28064" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="23984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31074" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8566-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT : AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG : AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT : GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG : ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG : GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG : GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG : ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG : CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG : GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT : ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG : GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG : AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG : GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG : GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCACTCCTTTAA</gDNA_template>
            <first_frame> K  K  K  A  S  I  F  A  S  S  F  D  C  L  F  F  N  P  T  M  E  A  T  A  S  F  T  S  T  M  A  S  H  H  F  F  P  L  S  K  A  T  L  S  S  S  K  L  N  P  T  C  N  S  S  S  S  W  I  G  S  T  H  S  L  S  F  S  S  R  N  S  F  T  :  R  D  T  W  R  V  I  N  S  K  N  V  V  R  R  E  M  S  G  V  I  R  A  E  M  F  G  Q  L  T  S  G  L  E  N  A  W  N  K  L  K  G  E   : E  V  L  T  K  E  N  I  V  E  P  M  R  D  I  R  R  A  L  L  E  A  D  :  V  S  L  P  V  V  R  R  F  V  Q  S  V  S  E  E  A  V  G  T  G  L  I  R  G  V  K  P  D  Q  Q  L  V  K  :  T  V  R  D  E  L  V  K  L  M  G  G  E  V  S  E  L  V  F  A  K  S  K  P  T  V  I  L  L  A  G  L  Q  G  V  G  K  T  T  V  S  A  K  L  A  L  Y  L  K  K  Q  :  G  K  S  C  M  L  I  A  G  D  V  Y  R  P  A  A  I  D  Q  L  V  I  L  G  K  Q  :  V  D  V  P  V  Y  A  A  G  T  D  V  K  P  A  E  I  A  R  Q  G  L  Q  E  A  K  K  K  N  V  D  V  V  I  M  D  T  A  G  R  L  Q  :  I  D  K  T  M  M  D  E  L  K  D  V  K  R  V  L  N  P  T  E  V  L  L  V  V  D  A  M  T  G  Q  E  A  A   : A  L  V  T  T  F  N  L  E  I  G  I  T  G  A  I  L  T  K  L  D  G  D  S  R  G  G  A  A  L  S  V  K  E  :  V  S  G  K  P  I  K  L  V  G  R  G  E  R  M  E  D  L  E  P  F  Y  P  D  R  M  A  G  R  I  L  G  M  G  D  V  L  S  F  V  E  K  A  Q  E  V  :  M  R  Q  E  D  A  E  D  L  Q  K  K  I  M  S  A  K  F  D  F  N  D  F  L  K  Q  T  R  A  V  A  R  M  G  T  M  S  R  V  I  G  M  M  P  G  M  G  K  :  V  T  P  A  Q  I  R  E  A  E  K  S  L  K  I  M  E  S  M  I  D  V  M  T  P   : E  E  R  E  Q  P  E  L  L  A  E  S  P  A  R  R  K  R  I  A  Q  E  S  G  K  T  E  Q  Q  :  V  S  Q  L  V  A  Q  L  F  Q  M  R  V  R  M  K  N  L  M  G  V  M  E  G  G  S  I  P  A  L  S  N  L  E  E  A  L  K  S  E  Q  Q  :  A  P  P  G  T  A  R  R  K  R  R  S  E  P  R  K  Q  F  A  D  S  G  S  A  R  P  S  P  R  G  F  G  A  K  N  *  S  I  R  L  V  C  Q  T  N  F  *  I  F  D  *  L  S  M  S  I  N  *  K  K  E  L  *  A  K  K  E  M  I  N  *  K  R  E  V  L  D  K  I  I  Y  S  T  L  Y  V  L  S  T  I  *  F  C  P  S  S  C  V  T  I  V  F  L  I  Y  L  I  I  L  *  S  *  K  F  H  C  F  S  H  S  F   </first_frame>
            <second_frame>  R  K  K  L  Q  F  L  L  L  L  L  I  V  C  S  L  I  L  P  W  K  P  L  L  L  S  L  Q  L  W  L  L  T  I  S  F  H  F  L  K  P  P  F  H  L  L  N  L  I  P  L  V  I  L  L  L  L  G  L  V  L  L  I  L  F  H  F  L  Q  E  I  H  L  L :   G  I  H  G  G  *  S  I  P  R  M  W  *  E  G  K  *  V  E  L  L  E  L  R  C  L  G  S  S  L  A  D  W  K  M  L  G  T  S  S  K  E  K  :  R  F  *  P  R  K  T  S  W  N  L  *  G  T  S  G  G  L  F  *  K  L  M :   L  V  S  Q  L  S  E  G  L  F  S  L  L  V  K  K  P  L  A  L  V  *  F  E  V  *  N  Q  I  S  N  *  L  R :   L  Y  V  T  S  L  *  N  *  W  V  E  R  F  L  N  W  F  L  L  N  L  S  P  P  *  Y  Y  W  P  V  Y  K  V  L  G  R  Q  L  L  V  Q  S  *  L  Y  I  *  R  S  R :   V  R  V  A  C  *  L  L  E  T  C  T  D  L  L  L  L  T  N  L  L  F  W  V  N  R :   L  M  Y  L  F  M  Q  Q  E  Q  M  *  N  L  Q  K  *  P  D  K  D  Y  K  R  P  K  R  R  M  *  M  *  S  *  W  I  Q  L  E  D  F  R :   *  I  K  L  *  W  M  N  *  K  T  *  N  G  Y  *  T  P  Q  R  F  Y  L  L  W  M  Q  *  L  A  K  K  L  Q  :  L  W  S  Q  H  S  I  S  K  L  E  L  L  V  P  S  *  R  S  *  M  E  I  L  G  V  E  Q  L  *  V  S  R  R :   Y  Q  E  S  Q  S  S  S  *  E  G  V  N  V  W  R  T  L  N  L  S  I  L  T  A  W  L  D  V  F  *  E  W  E  M  F  Y  R  L  L  R  K  P  K  K  L :   C  V  K  K  M  L  K  I  C  R  R  R  S  *  V  Q  N  L  I  S  M  T  S  *  S  K  L  G  Q  L  L  G  W  V  P  C  R  V  L  L  V  *  C  L  A  W  E  R :   L  L  L  H  K  F  E  R  Q  R  R  A  *  R  *  W  S  Q  *  *  M  S  *  H  Q  :  R  R  G  S  N  Q  N  C  *  Q  N  L  L  L  E  G  N  V  S  L  K  N  L  G  K  L  S  N  R :   *  V  N  L  L  L  N  F  F  K  C  V  Y  V  *  R  I  *  W  A  L  W  K  V  V  R  F  L  H  *  V  I  *  R  R  H  *  N  L  N  S  R :   L  L  P  V  L  Q  G  G  S  E  G  Q  N  Q  G  N  N  L  Q  T  R  D  Q  L  G  L  A  L  V  V  S  G  P  R  T  E  V  *  D  *  Y  V  K  Q  I  F  E  S  L  T  S  Y  L  *  V  S  T  R  K  R  N  C  E  Q  K  R  K  *  S  T  R  K  G  K  F  L  T  R  *  Y  I  V  H  C  M  Y  S  Q  L  Y  S  F  V  P  L  L  V  *  L  L  S  S  *  Y  I  L  L  S  C  N  L  E  N  F  I  V  F  P  T  P  L  </second_frame>
            <third_frame>   E  K  S  F  N  F  C  F  F  F  *  L  F  V  L  *  S  Y  H  G  S  H  C  F  F  H  F  N  Y  G  F  S  P  F  L  S  T  F  *  S  H  P  F  I  F  *  T  *  S  H  L  *  F  F  F  F  L  D  W  F  Y  S  F  S  F  I  F  F  K  K  F  I  Y   : *  G  Y  M  E  G  D  Q  F  Q  E  C  G  K  K  G  N  E  W  S  Y  *  S  *  D  V  W  A  A  H  *  R  I  G  K  C  L  E  Q  A  Q  R  R  R :   G  F  D  Q  G  K  H  R  G  T  Y  E  G  H  Q  E  G  S  F  R  S  *   : C  *  S  P  S  C  Q  K  V  C  S  V  C  *  *  R  S  R  W  H  W  F  D  S  R  C  K  T  R  S  A  T  S  *   : D  C  T  *  R  A  C  E  T  D  G  W  R  G  F  *  T  G  F  C  *  I  *  A  H  R  N  T  I  G  R  S  T  R  C  W  E  D  N  C  *  C  K  V  S  F  I  S  K  E  A   : G  *  E  L  H  A  D  C  W  R  R  V  Q  T  C  C  Y  *  P  T  C  Y  F  G  *  T   : G  *  C  T  C  L  C  S  R  N  R  C  K  T  C  R  N  S  P  T  R  I  T  R  G  Q  K  E  E  C  R  C  S  H  N  G  Y  S  W  K  T  S   : D  R  *  N  Y  D  G  *  I  K  R  R  E  T  G  T  E  P  H  R  G  F  T  C  C  G  C  N  D  W  P  R  S  C  S :   F  G  H  N  I  Q  S  R  N  W  N  Y  W  C  H  L  D  E  A  R  W  R  F  *  G  W  S  S  F  K  C  Q  G   : G  I  R  K  A  N  Q  A  R  R  K  G  *  T  Y  G  G  P  *  T  F  L  S  *  P  H  G  W  T  Y  F  R  N  G  R  C  S  I  V  C  *  E  S  P  R  S   : Y  A  S  R  R  C  *  R  F  A  E  E  D  H  E  C  K  I  *  F  Q  *  L  P  E  A  N  S  G  S  C  *  D  G  Y  H  V  A  C  Y  W  Y  D  A  W  H  G  K   : G  Y  S  C  T  N  S  R  G  R  E  E  L  K  D  N  G  V  N  D  R  C  H  D  T  R :   G  E  G  A  T  R  I  V  S  R  I  S  C  *  K  E  T  Y  R  S  R  I  W  E  N  *  A  T   : G  E  S  T  C  C  S  T  F  S  N  A  C  T  Y  E  E  F  D  G  R  Y  G  R  W  F  D  S  C  T  E  *  S  R  G  G  T  K  I  *  T  A   : G  S  S  R  Y  C  K  E  E  A  K  V  R  T  K  E  T  I  C  R  L  G  I  S  *  A  *  P  S  W  F  R  G  Q  E  L  K  Y  K  T  S  M  S  N  K  F  L  N  L  *  L  A  I  Y  E  Y  Q  L  E  K  G  I  V  S  K  K  G  N  D  Q  L  E  K  G  S  S  *  Q  D  N  I  *  Y  I  V  C  T  L  N  Y  I  V  L  S  L  F  L  C  N  Y  C  L  L  D  I  S  Y  Y  L  V  I  L  K  I  S  L  F  F  P  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31097" stop="30876"/>
                    <exon start="30800" stop="30671"/>
                    <exon start="29053" stop="28986"/>
                    <exon start="28912" stop="28811"/>
                    <exon start="28668" stop="28516"/>
                    <exon start="28314" stop="28237"/>
                    <exon start="28064" stop="27939"/>
                    <exon start="27859" stop="27757"/>
                    <exon start="26840" stop="26740"/>
                    <exon start="26118" stop="25981"/>
                    <exon start="25891" stop="25748"/>
                    <exon start="25482" stop="25407"/>
                    <exon start="25137" stop="25052"/>
                    <exon start="24941" stop="24816"/>
                    <exon start="24348" stop="24241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1758</number_coding_nucleotides>
                  <number_encoded_amino_acids>586</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKASIFASSFDCLFFNPTMEATASFTSTMASHHFFPLSKATLSSSKLNPTCNSSSSWIGSTHSLSFSSRNSFTRDTWRVINSKNVVRREMSGVIRAEMFGQLTSGLENAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSEEAVGTGLIRGVKPDQQLVKTVRDELVKLMGGEVSELVFAKSKPTVILLAGLQGVGKTTVSAKLALYLKKQGKSCMLIAGDVYRPAAIDQLVILGKQVDVPVYAAGTDVKPAEIARQGLQEAKKKNVDVVIMDTAGRLQIDKTMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVARMGTMSRVIGMMPGMGKVTPAQIREAEKSLKIMESMIDVMTPEEREQPELLAESPARRKRIAQESGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSIPALSNLEEALKSEQQAPPGTARRKRRSEPRKQFADSGSARPSPRGFGAKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="60695" PGL_stop="55991"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60695" e_stop="59881"/>
            <exon e_start="58054" e_stop="57886"/>
            <exon e_start="56519" e_stop="55991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60695" e_stop="59881" e_length="815"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.968">
            <gDNA_intron_boundary i_start="59880" i_stop="58055" i_length="1826"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58054" e_stop="57886" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="57885" i_stop="56520" i_length="1366"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="56519" e_stop="55991" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60695" stop="59881"/>
              <exon start="58054" stop="57886"/>
              <exon start="56519" stop="55991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60695" stop="60063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59999" stop="59881"/>
              <exon start="58054" stop="57886"/>
              <exon start="56519" stop="56021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8002-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCAGTAATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGAT : GGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAG : GCTTTTATCATTCTGCCATCCTCAACACGCATGACGTTAAGGGAGGAGATGACTTATGGGAGCTAGCAAAGAGAAGTTACACATCTTTTATCAACGCCAAGAACAATAACAAGCATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGGCCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTTAGAACTTCTCTGATCTCCGTGTTTGAAGACACTGTGATCGATACCTCCAGCACAATGCATCAAGAAATCGGATTAGAAGACTTCATCGGGTGTGCATCCGTGCATGGGGTAGGCCCTTCTATTGCCATATTCGACACAATCAGGGACGGACATTTGGATTGTGCATGTGTTTATCCCTTCCCCTTGCATACTAGAGAGCAAATACAGGAGCTCATTGGTGAAATGAAAAAAATCCTTATTGACTGCTAGTATATTACTAAAACAAACACTATATTTTCCCACTCATCATGTTCAATGAAAATGCAGTAAGTTGTTTGTTTTTGACATCAAAAGTT</gDNA_template>
            <first_frame> S  Q  *  W  L  S  K  E  A  P  P  Q  L  R  R  L  S  *  K  V  G  R  P  E  A  P  S  T  A  G  A  R  R  F  P  V  A  Q  V  *  Q  S  *  L  Y  S  C  Q  N  H  Q  T  F  H  F  S  K  M  P  F  T  N  S  K  I  P  I  L  S  S  N  L  N  S  I  T  N  Q  A  Q  I  P  T  L  T  S  F  P  P  L  L  I  F  K  S  S  R  S  I  S  H  Q  R  F  R  F  S  D  A  S  K  P  P  I  S  P  P  S  P  I  F  I  S  S  S  N  T  K  S  T  T  T  H  G  *  T  P  A  L  H  Q  I  P  T  R  I  S  S  S  P  A  F  I  N  *  K  T  K  N  R  C  S  L  *  G  F  I  H  R  C  V  I  G  R  L  H  W  R  C  *  R  S  Y  *  S  W  *  V  V  R  R  K  M  K  K  G  Q  N  W  K  Y  *  K  R  W  R  L  V  W  G  L  K  S  I  F  Q  M  V  K  R  V  N  H  F  G  R  V  G  L  I  W  W  G  M  V  *  I  H  *  D  F  V  I  *  S  L  W  I  R  N  Q  R  E  D  H  K  L  *  N  C  S  *  I  N  K  R  L  I  T  F  L  M :   A  V  K  R  E  V  *  N  C  V  D  Y  W  L  L  L  D  *  L  Q  L  I  P  *  K  A  *  R  R  I  N  G  R  S  M  Q  L  *  P  L  L  T  A  V  Q  F  L  I  Q  C  L  A  L  I  F  Q  :  A  F  I  I  L  P  S  S  T  R  M  T  L  R  E  E  M  T  Y  G  S  *  Q  R  E  V  T  H  L  L  S  T  P  R  T  I  T  S  I  S  Q  T  W  E  T  *  I  S  S  C  A  G  P  L  I  I  P  A  *  L  H  P  L  H  L  E  L  L  *  S  P  C  L  K  T  L  *  S  I  P  P  A  Q  C  I  K  K  S  D  *  K  T  S  S  G  V  H  P  C  M  G  *  A  L  L  L  P  Y  S  T  Q  S  G  T  D  I  W  I  V  H  V  F  I  P  S  P  C  I  L  E  S  K  Y  R  S  S  L  V  K  *  K  K  S  L  L  T  A  S  I  L  L  K  Q  T  L  Y  F  P  T  H  H  V  Q  *  K  C  S  K  L  F  V  F  D  I  K  S  </first_frame>
            <second_frame>  L  S  N  G  *  A  R  K  R  R  R  S  S  V  V  *  V  E  K  S  A  G  R  K  H  R  A  Q  L  V  Q  G  G  S  R  W  H  R  Y  N  S  L  S  S  T  L  V  K  T  T  R  H  F  T  S  P  K  C  P  S  Q  T  P  K  F  Q  S  Y  P  Q  I  S  T  P  L  R  I  K  H  K  F  L  L  L  H  H  S  L  H  F  S  S  S  N  P  A  V  R  S  L  I  N  G  S  D  S  P  T  P  Q  N  L  R  S  H  L  R  L  R  F  S  S  H  P  R  T  R  N  Q  P  Q  L  M  D  E  H  R  H  F  I  R  F  R  H  G  Y  L  L  R  Q  H  L  S  I  R  K  R  K  I  G  V  R  F  K  D  S  Y  I  G  V  *  S  G  G  C  I  G  G  A  E  E  V  I  E  A  G  E  L  *  E  G  R  *  R  R  D  R  I  G  N  I  E  K  D  G  G  W  F  G  D  *  R  V  Y  S  R  W  *  S  E  *  T  I  L  G  A  W  D  *  Y  G  G  V  W  F  E  F  I  E  I  L  *  F  E  V  Y  G  F  G  I  N  E  R  I  T  S  C  E  I  A  V  E  *  T  R  D  *  S  H  S  *   : W  L  *  N  E  R  Y  K  T  V  W  T  I  G  C  C  W  I  N  C  S  S  F  L  K  R  P  K  G  E  S  M  G  E  V  C  N  C  N  P  Y  *  L  P  F  N  S  *  S  S  A  *  P  *  F  S  R :   L  L  S  F  C  H  P  Q  H  A  *  R  *  G  R  R  *  L  M  G  A  S  K  E  K  L  H  I  F  Y  Q  R  Q  E  Q  *  Q  A  F  H  R  H  G  R  P  E  F  P  H  V  Q  G  H  *  *  S  R  L  N  S  I  L  F  T  *  N  F  S  D  L  R  V  *  R  H  C  D  R  Y  L  Q  H  N  A  S  R  N  R  I  R  R  L  H  R  V  C  I  R  A  W  G  R  P  F  Y  C  H  I  R  H  N  Q  G  R  T  F  G  L  C  M  C  L  S  L  P  L  A  Y  *  R  A  N  T  G  A  H  W  *  N  E  K  N  P  Y  *  L  L  V  Y  Y  *  N  K  H  Y  I  F  P  L  I  M  F  N  E  N  A  V  S  C  L  F  L  T  S  K  V </second_frame>
            <third_frame>   S  V  M  A  E  Q  G  S  A  A  A  A  P  S  S  E  L  K  S  R  P  A  G  S  T  E  H  S  W  C  K  A  V  P  G  G  T  G  I  T  V  L  A  L  L  L  S  K  P  P  D  I  S  L  L  Q  N  A  L  H  K  L  Q  N  S  N  P  I  L  K  S  Q  L  H  Y  E  S  S  T  N  S  Y  S  Y  I  I  P  S  T  S  H  L  Q  I  Q  P  F  D  L  S  S  T  V  Q  I  L  R  R  L  K  T  S  D  L  T  S  V  S  D  F  H  L  I  L  E  H  E  I  N  H  N  S  W  M  N  T  G  T  S  S  D  S  D  T  D  I  F  F  A  S  I  Y  Q  L  E  N  E  K  S  V  F  A  L  R  I  H  T  S  V  C  D  R  A  A  A  L  A  V  L  K  K  L  L  K  L  V  S  C  E  K  E  D  E  E  G  T  E  L  E  I  L  K  K  M  E  V  G  L  G  I  E  E  Y  I  P  D  G  K  A  S  K  P  F  W  A  R  G  I  D  M  V  G  Y  G  L  N  S  L  R  F  C  N  L  K  F  M  D  S  E  S  T  R  G  S  Q  V  V  K  L  Q  L  N  K  Q  E  T  D  H  I  L  D  :  G  C  K  T  R  G  I  K  L  C  G  L  L  A  A  A  G  L  I  A  A  H  S  L  K  G  L  K  E  N  Q  W  E  K  Y  A  I  V  T  L  I  N  C  R  S  I  L  D  P  V  L  S  P  D  F  P   : G  F  Y  H  S  A  I  L  N  T  H  D  V  K  G  G  D  D  L  W  E  L  A  K  R  S  Y  T  S  F  I  N  A  K  N  N  N  K  H  F  T  D  M  G  D  L  N  F  L  M  C  R  A  I  D  N  P  G  L  T  P  S  S  S  L  R  T  S  L  I  S  V  F  E  D  T  V  I  D  T  S  S  T  M  H  Q  E  I  G  L  E  D  F  I  G  C  A  S  V  H  G  V  G  P  S  I  A  I  F  D  T  I  R  D  G  H  L  D  C  A  C  V  Y  P  F  P  L  H  T  R  E  Q  I  Q  E  L  I  G  E  M  K  K  I  L  I  D  C  *  Y  I  T  K  T  N  T  I  F  S  H  S  S  C  S  M  K  M  Q  *  V  V  C  F  *  H  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60693" stop="59881"/>
                    <exon start="58054" stop="57886"/>
                    <exon start="56519" stop="56077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1422</number_coding_nucleotides>
                  <number_encoded_amino_acids>474</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVMAEQGSAAAAPSSELKSRPAGSTEHSWCKAVPGGTGITVLALLLSKPPDISLLQNALHKLQNSNPILKSQLHYESSTNSYSYIIPSTSHLQIQPFDLSSTVQILRRLKTSDLTSVSDFHLILEHEINHNSWMNTGTSSDSDTDIFFASIYQLENEKSVFALRIHTSVCDRAAALAVLKKLLKLVSCEKEDEEGTELEILKKMEVGLGIEEYIPDGKASKPFWARGIDMVGYGLNSLRFCNLKFMDSESTRGSQVVKLQLNKQETDHILDGCKTRGIKLCGLLAAAGLIAAHSLKGLKENQWEKYAIVTLINCRSILDPVLSPDFPGFYHSAILNTHDVKGGDDLWELAKRSYTSFINAKNNNKHFTDMGDLNFLMCRAIDNPGLTPSSSLRTSLISVFEDTVIDTSSTMHQEIGLEDFIGCASVHGVGPSIAIFDTIRDGHLDCACVYPFPLHTREQIQELIGEMKKILIDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="108587" PGL_stop="106422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108587" e_stop="108521"/>
            <exon e_start="108421" e_stop="108376"/>
            <exon e_start="107930" e_stop="107845"/>
            <exon e_start="106834" e_stop="106705"/>
            <exon e_start="106577" e_stop="106422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.008" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108587" e_stop="108521" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.008" acc_prob="0.995">
            <gDNA_intron_boundary i_start="108520" i_stop="108422" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="108421" e_stop="108376" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="108375" i_stop="107931" i_length="445"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107930" e_stop="107845" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107844" i_stop="106835" i_length="1010"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106834" e_stop="106705" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106704" i_stop="106578" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="106577" e_stop="106422" e_length="156"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108587" stop="108521"/>
              <exon start="108421" stop="108376"/>
              <exon start="107930" stop="107845"/>
              <exon start="106834" stop="106705"/>
              <exon start="106577" stop="106422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT : CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG : GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG : GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG : AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTG</gDNA_template>
            <first_frame> N  E  G  R  *  I  G  V  R  C  C  T  H  F  C  I  V  Q  *  Y  I  H   : S  R  Y  *  F  V  W  K  R  N  Y  G  S  H  Y  W :   W  N  E  G  E  G  *  Q  R  *  V  F  S  V  C  C  Y  A  C  S  S  G  C  V  T  A  M  Q   : G  T  W  N  *  C  S  S  H  *  A  P  S  Y  R  R  Q  Q  D  Q  D  S  W  S  W  C  P  V  R  S  *  S  F  G  S  F  W  H  E  N  W  T  Y  R :   G  C  Y  S  N  S  H  R  *  Y  S  Q  K  G  W  *  K  G  K  E  A  V  K  T  L  S  L  F  C  S  M  L  Q  I  G  G  K  Y  C  C  R  K  M  Q  L  S  I  S  I  Y  I   </first_frame>
            <second_frame>  T  R  E  G  E  L  V  F  G  V  A  H  I  F  A  S  F  N  D  T  F  I  :  H  V  T  D  L  S  G  R  E  T  M  V  R  I  T   : G  G  M  K  V  K  A  D  R  D  E  S  S  P  Y  A  A  M  L  A  A  Q  D  V  S  Q  R  C  K  :  E  L  G  I  N  A  L  H  I  K  L  R  A  T  G  G  N  K  T  K  T  P  G  P  G  A  Q  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I   : E  D  V  T  P  I  P  T  D  S  T  R  R  K  G  G  R  R  G  R  R  L  *  R  L  F  L  F  S  A  A  C  C  K  L  E  E  N  I  V  V  E  K  C  S  F  R  Y  L  F  T  F  </second_frame>
            <third_frame>   R  G  K  V  N  W  C  S  V  L  H  T  F  L  H  R  S  M  I  H  S  F :   T  L  L  I  C  L  E  E  K  L  W  F  A  L  L  :  V  E  *  R  *  R  L  T  E  M  S  L  L  R  M  L  L  C  L  Q  L  R  M  C  H  S  D  A  R :   N  L  E  L  M  L  F  T  L  S  S  E  L  Q  E  A  T  R  P  R  L  L  V  L  V  P  S  P  L  L  E  L  W  L  V  L  A  *  K  L  D  V  *  :  R  M  L  L  Q  F  P  P  I  V  L  A  E  R  V  V  E  G  E  G  G  C  E  D  S  F  S  F  L  Q  H  V  A  N  W  R  K  I  L  L  S  K  N  A  A  F  D  I  Y  L  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108586" stop="108521"/>
                    <exon start="108421" stop="108376"/>
                    <exon start="107930" stop="107845"/>
                    <exon start="106834" stop="106705"/>
                    <exon start="106577" stop="106510"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TREGELVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 52 chains have been computed
$ 
$ memory statistics:
$ 15848 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2264 bytes was the average size of a spliced alignment
$ 9728 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2432 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 52 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-10 19:49:36
-->
