<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 11:11:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E746417" ref_strand="+" ref_description="SGN-E746417 [GI|47105545]">
      <seq>gagcaaagaagaaagcgagagagaggagagagaaagcgagagagagaggagagagagatcttgtgtgtgtttatatatgtatatgcacacacatatatatattcaaagaagcaaatctgtgggaatattttttggggtggaatttggaaattggatctgacgttgaaagattgcagaatggaagatggcatattcttttggggccctgtaacatctaaagagtggtgtgagccaaattatgtgcagtcatcctatattgcagaattcttcaacaccatttcaaatatcccatgcattctcttggctcttattggtcttgtgaacgcccttagacaacggtttgagaaaaggttcagtgtccttcatatgtcaaacataatacttgccttggggagtatgacatatcatgccactttgcggcagatgcaacagcaaggtgatgagacaccaatggtctgggagatgcttctgtatatctatatcctctattcaccagattggcattatcggagtacgatgcccacctttctgttcctttatggtgcgctctttgccattgtgcattcacagcttcgctttggcattggtttcaaagtacactacgcacttttgtgccttctttgcgctcctcgtgcatataagtattacattcatacagaagacacattggctaagcgcctcgcaaagttatacgtggcaactttgttggtcggagctgcttgctggctatgtgatcgattattctgcaagcagattcagggctggtacattaatccacagggccatgcagtctggcacgtcttaatgggcttcaactcgtactttgcaaatgcattcttgatgtattgccgtgctcagcaacgtgaatggaatcccaaaatcaagcacttgttcggttttttcccctatgtgaagattgagaaaccgaaaacccagtagcagaagtcgcttctctttcgagcttagcctgtaataccccaaacatgtgcaggatatggctttggtgagcacaaagcaagcactcagcaattttttttctcttttcccattttgcagaatgtattgtaaatgaaagtctggaatagttttgactctcgaccgaatattggttaatttttgactgtacaattagtggttttccagtgtaccatattttacactcccacagaagatgacatggattaactagttgaattcttttttctggcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="6331" stop="863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6032" g_stop="5864" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5863" i_stop="3605" i_length="2259">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3604" g_stop="3349" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="425" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3348" i_stop="1948" i_length="1401">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1947" g_stop="1167" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="1206" r_length="781" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1209" polyA_stop="1225"/>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E746417" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1206</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6032" e_stop="5864"/>
          <exon e_start="3604" e_stop="3349"/>
          <exon e_start="1947" e_stop="1167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAAAGAAGAAAGCGAGAGAGAGAGGAGAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAGGTTTGTTTTTGTATTTTTCTGAATTTTTTCTTAGTATAAATAGAAGATTGCGTATGCATATTTTGCTTTTTGATATGTTGCTAATTTGTGTTTTGTGGAGAATTTTGGTTTATTTGTGGGATCTAATGGTGATAGGTTGGTTTACATTATGAGGGTGTTTTTTTGATATGGGAATAGTGTTAATGGTGATATTGTAGTTTGAATTAAGCAGTGTAGGGATTTGTGGGTGGTTTAATGGGGTAAAAAACGGATCTTTGGAGTTGGGTTTTGTTGATTGTTGAATTATTTGTGGGTTTGGTGGAAATTTGATCGAGTTTTGTATTTAGGGGTGTTTGTTGGAGAGGATTGATGATATCTGGTGTACATGCCCAGTTTGGATTAGTTGAGCTGGCAGTATAAATGAAAATTGAAAACAATTAAGGTTGAGATTGTAGCTGAAAGATGGGTTTTAGATTAAGCAGTAGGAGAGTATAGTTGTTATCGTCTGCACCTGTGGTTGTGTGCTGTAAGAGATAGTCGAGGTGGGTGCAAGTTGGGATAATCACCACCACAGTCTTAATTGAAAAACAAATAAAAAAACAGAAAGGTTCGAAATTGTAGCTGAAGATGGGTGTTTAGATAGGACTGCTTGGTATATTTTGTGTGTGGGGGTGGGGGGTGGGGGGGAATGCTTGATAGCTCATGATAATTTTGATGATGGGTTTCACACATTAATTCAAGTGAGTTTGACTTTGTGGAACTTCAAGGTTTCACACATTATTAATTCGTGAAAGAGACGAATAAGTTCTCTTGAATCTAACTTGTTGAGTTAATGGTTTGTGGCAAAGCTTCCTTCTTAGATTTTTTTGAGGAACAGTTAGTCTAGGAAGTGTTGTATTGAAGTAGTTTCTCGAAGTGGAAGTATTTGTGTCATGCTTTTGGCTTGACTTTCTTTTTTTGTATCATAATTAATTAAATTAGTTTTTAGGTGTTTGTTGTACATTCAATCAATTCAACTATAAGCACCTGCTGGATCTTTTCATCTAAGAATTGAAAGAATAAGCCCTTTGTTTTTCAACAAATTGTAGGAAGGTTCATTTTTGTCTTTTGCTACTACCTTTGTTGGTACAGTGGTCACTATGGAATTTTCTAATTGTATCAGTCCTTTATTGTACACTATTCTTAATGGTTTGTACCCACTTCTGGTGCATATGGAAAATGGATAGACTTTCTTTTTTGTTTGTACTGAAACTGAAAATTTAGCAATTTTACTTAAAAGTTGGTGGTAGTGTTTCTTGGGAGAAAGCATCAAGCAAATATCAACCTCTATGCAGGTATAATAGTTCAGCAATATATTTGATCTTCCCACTGGAATTGATATCATCCGGTCTTCTATGGGAGCAAATATGTTTCAGTTTTTAGTGGATATATTTTTTTTAAAAGAAATCTGCATTGGAAAAGAATGAGATTTGTCAATTAATTTTTTGATAAGGAGAAATAAGTATGCATACTTCATATTTACTCCATTTGTGACCCACTTTAGGGACATAAGTTTCAATCTAGCCAATTTTGTGTGTGATATTTAATCTCAGAATGTTGATTGCCAAAGTCACGTGAAGTTAATATGAGATAGAGAGTATGAAAGAGCTAGACATAAAGAACAAGAAGTTATTCGAGATCAAACTCAAGCATTCACGGCATTTTTAGACCTGAGGCAAAATTTTAAGGATTGTCGATAATTTCCTGAAGTTAACATTAAAGAAGTGTCACTTAAACAGCCATGCGCACTAGTATAACGTTTACACAGAGATCCTGTGTTCCAGTGTCATGTGGATAACGCGACTCATTTTGGTCTCGAGTTCTTCGGTCCCTGCTCTCTCTCCTTTTTTAGTTTCATGTTGTGCCCATTCTGTGATTCATCCTAGATCATTGTTTCTGTGCATAGTATTTGTATAGAAGATTATAATCGGTAGTGTGGCAACTTTTTAGTTCATACACATGTAATATTGCTGATTATCATCCTTCTAAGGATATATTTAGAAAATTTGAATCTCTTTAATTAATCCTTAACTATTGAGACATGCTAAAATGCTTGAGTAATTTTCTTGCATCAAAACTGCTAGCTAAGTTGCTCGGACTCTCCTAAAATGTTGTGGCACTTGTGTTGGATCCTTTAGAAATGCACCACTTTTGAGGGGTCTGACACACACCCGATGACATTTTTGAAGAGTCCGAGCAATGTAGACTGCAAGTGCCTACAAGCTGACTTTTTCAGGATAGATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGATGTAAGCATTCTCTCCATTCTCTATGTTGGATTCTCTGTAAAATTTGTTAGGTGTACAATAGACATGTATGTATGTATGTGTTAATCATCATTTGTTTGCTAAGGTACGAGGAAATTGACTCAATAGGATGCTCGATAGCCTCATTTTTTGAGATGTTTATATTGTTAAATCTCTGTAGAACTATATGAGAACAGGAAGATGGTAAACTGAAGATATTATATCATGCGTGCTAATGTGATTACAACTATCCCCTACTTTATGCAAATGAGCACTTGTATCTTGACCTATCAGCCAATCTATGCTTGCTTAGACTCTTCACAAATGTCACCATACTGTGTCGGATCCTCCAAAAATGCATTACTGAATGGCCCGAGACACACCTTTTGATATTTTGAAGAGTCTGAGCAACTTAGCAGCCAATAATCTCCTGCTGGAATGAGGTCACTGCCTTCCGTGCCCCACCCCCCTTCTTGTATGATTTTTCTATGGTCATGTTTTTTTTATAGACTGAATCTGTTAGAGAATACACAGGTAGAAGATTTGGAATTTTTCTTATTTTCTTGTATATTGGTATCTGAAGTATTGACTTGTGAAGTTTGAGTTCGTTGCAATCACAACGTCATCTAATCTGTTTCGCCACTACCTTTCTTTTGAAAAATTGATTGGCATATTTCTTGTAGATGAGCACAAATTGCATACTTTTTCAGTTTATGGGTAGGATGATCCTATCTATTGTTCAAGCCACAACTCAATATTCCAAACTCCTAGTTACTGATTCTTGAAAACTATAGAAGTGCCAAAGCTAATTCTGGTTTTCAAAAAGATAGTGGGAAAGAGGAGCACAAGGATGCATGGTTTGATCCTGTCAAGAAGTTTTTAGTGCATTGAGTAATAATCTCCATGACAGAAATAGTGATAGACCAACTGATTTGAGTCATTTTAAGAAAGTCTATGTCAAATATGCCATAACAATGTCTTGGTATTTCTATATAATTCTAATTTCCAATAAAGCAAAATCTCAGTCAGCCACATAAACAAATCCCCTCCCGACTTCTGACTTCGATGTAATTAGTTGGGACGGGAAGGTTTCACTTGTAAAGATATTGACAGTTTTGGTTCTGTGAAAGTGTCTTGTTATTTATGTCGTGTTCCCAGATGGAAAATATTTGTAATGGAGCAGCATTACAACATAAAGCTTACTGTGAATCATATACCAAGTGCCACCTTCAGTATGCCTTGTGCCTCTTGCTTTTTTGTTACGGCCCTTCATACTTTCAAATAAGGGCTTCTCTATGCATGCTTGCAGACAACAGTGATGAAACTAATCGTCCTTGAAAATACTGCCTGCTTTTAAGTGTCCTGTTATTGTTTTATACTATGATTCATGTATTAAATTGTCAGGCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCATTCTTGATGTATTGCCGTGCTCAGCAACGTGAATGGAATCCCAAAATCAAGCACTTGTTCGGTTTTTTCCCCTATGTGAAGATTGAGAAACCGAAAACCCAGTAGCAGAAGTCGCTTCTCTTTCGAGCTTAGCCTGTAATACCCCAAACATGTGCAGGATATGGCTTTGGTGAGCACAAAGCAAGCACTCAGCAATTTTTTTTCTCTTTTCCCATTTTGCAGAATGTATTGTAAATGAAAGTCTGGAATAGTTTCGACTCTCGACCGAATATTGGTTAATTTTTGACTGTACAATTAGTGGTTTTCCAGTGTACCATATTTTACACTCCCACAGAAGATGACATGGATTAACTAGTTGAATTCTTTTTTCTG</genome_strand>
        <mrna_strand>GAGCAAAGAAGAAAGCGAGAGAGAGGAGAGAGAAAGCGAGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTGAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCATTCTTGATGTATTGCCGTGCTCAGCAACGTGAATGGAATCCCAAAATCAAGCACTTGTTCGGTTTTTTCCCCTATGTGAAGATTGAGAAACCGAAAACCCAGTAGCAGAAGTCGCTTCTCTTTCGAGCTTAGCCTGTAATACCCCAAACATGTGCAGGATATGGCTTTGGTGAGCACAAAGCAAGCACTCAGCAATTTTTTTTCTCTTTTCCCATTTTGCAGAATGTATTGTAAATGAAAGTCTGGAATAGTTTTGACTCTCGACCGAATATTGGTTAATTTTTGACTGTACAATTAGTGGTTTTCCAGTGTACCATATTTTACACTCCCACAGAAGATGACATGGATTAACTAGTTGAATTCTTTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E307553" ref_strand="+" ref_description="SGN-E307553 [cLEY-24-B23]">
      <seq>ttcgctttggcattggtttcaaagtacactacgcacttttgtgccttctttgcgctcctcgtgcatataagtattacattcatacagaagacacattggctaagcgcctcgcaaagttatacgtggcaactttgttggtcggagctgcttgctggctatgtgatcgattattctgcaagcagattcagggctggtacattaatccacagggccatgcagtctggcacgtcttaatgggcttcaactcgtactttgcaaatgcattcttgatgtattgccgtgctcagcaacgtgaatggaatcccaaaatcaagcacttgttcggttttttcccctatgtgaagattgagaaaccgaaaacccagtagcagaagtcgcttctctttcgagcttagcctgtaataccccaaacatgtgcaggatatggctttggtgagcacaaagcaagcactcagcaattttttttctcttttcccattttgcagaatgtattgtaaatgaaagtctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="2101" stop="990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1801" g_stop="1290" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E307553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1801" e_stop="1290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCATTCTTGATGTATTGCCGTGCTCAGCAACGTGAATGGAATCCCAAAATCAAGCACTTGTTCGGTTTTTTCCCCTATGTGAAGATTGAGAAACCGAAAACCCAGTAGCAGAAGTCGCTTCTCTTTCGAGCTTAGCCTGTAATACCCCAAACATGTGCAGGATATGGCTTTGGTGAGCACAAAGCAAGCACTCAGCAATTTTTTTTCTCTTTTCCCATTTTGCAGAATGTATTGTAAATGAAAGTCTGGAAT</genome_strand>
        <mrna_strand>TTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCATTCTTGATGTATTGCCGTGCTCAGCAACGTGAATGGAATCCCAAAATCAAGCACTTGTTCGGTTTTTTCCCCTATGTGAAGATTGAGAAACCGAAAACCCAGTAGCAGAAGTCGCTTCTCTTTCGAGCTTAGCCTGTAATACCCCAAACATGTGCAGGATATGGCTTTGGTGAGCACAAAGCAAGCACTCAGCAATTTTTTTTCTCTTTTCCCATTTTGCAGAATGTATTGTAAATGAAAGTCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E704641" ref_strand="+" ref_description="SGN-E704641 [FA24DD08]">
      <seq>atctaaagagtggtgtgagccaaattatgtgcagtcatcctatattgcagaattcttcaacaccatttcaaatatcccatgcattctcttggctcttattggtcttgtcaacgcccttagacaacggtttgagaaaaggttcagtgtccttcatatgtcaaacataatacttgccttggggagtatgacatatcatgccactttgcggcagatgcaacagcaaggtgatgagacaccaatggtctgggagatgcttctgtatatctatatcctctattcaccagattggcattatcggagtacgatgcccacctttctgttcctttatggtgcgctctttgccattgtgcattcacagcttcgctttggcattggtttcaaagtacactacgcacttttgtgccttctttgcgctcctcgtgcatataagtattacattcatacagaagacacattggctaagcgcctcgcaaagttatacgtggcaactttgttggtcggagctgcttgctggctatgtgatcgattattctgcaagcagattcagggctggtacattaatccacagggccatgcagtccggcacgtcttaatgggcttcaactcgtactttgcaaatgcattcttgatgtattcccgtgctcagcaacgtgaatggaatccccaaacaaagcacttgttcggttttttccccctatgtgaagattgagaaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="3861" stop="1146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3561" g_stop="3349" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3348" i_stop="1948" i_length="1401">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1947" g_stop="1446" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="716" r_length="503" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E704641" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3561" e_stop="3349"/>
          <exon e_start="1947" e_stop="1446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGATGTAAGCATTCTCTCCATTCTCTATGTTGGATTCTCTGTAAAATTTGTTAGGTGTACAATAGACATGTATGTATGTATGTGTTAATCATCATTTGTTTGCTAAGGTACGAGGAAATTGACTCAATAGGATGCTCGATAGCCTCATTTTTTGAGATGTTTATATTGTTAAATCTCTGTAGAACTATATGAGAACAGGAAGATGGTAAACTGAAGATATTATATCATGCGTGCTAATGTGATTACAACTATCCCCTACTTTATGCAAATGAGCACTTGTATCTTGACCTATCAGCCAATCTATGCTTGCTTAGACTCTTCACAAATGTCACCATACTGTGTCGGATCCTCCAAAAATGCATTACTGAATGGCCCGAGACACACCTTTTGATATTTTGAAGAGTCTGAGCAACTTAGCAGCCAATAATCTCCTGCTGGAATGAGGTCACTGCCTTCCGTGCCCCACCCCCCTTCTTGTATGATTTTTCTATGGTCATGTTTTTTTTATAGACTGAATCTGTTAGAGAATACACAGGTAGAAGATTTGGAATTTTTCTTATTTTCTTGTATATTGGTATCTGAAGTATTGACTTGTGAAGTTTGAGTTCGTTGCAATCACAACGTCATCTAATCTGTTTCGCCACTACCTTTCTTTTGAAAAATTGATTGGCATATTTCTTGTAGATGAGCACAAATTGCATACTTTTTCAGTTTATGGGTAGGATGATCCTATCTATTGTTCAAGCCACAACTCAATATTCCAAACTCCTAGTTACTGATTCTTGAAAACTATAGAAGTGCCAAAGCTAATTCTGGTTTTCAAAAAGATAGTGGGAAAGAGGAGCACAAGGATGCATGGTTTGATCCTGTCAAGAAGTTTTTAGTGCATTGAGTAATAATCTCCATGACAGAAATAGTGATAGACCAACTGATTTGAGTCATTTTAAGAAAGTCTATGTCAAATATGCCATAACAATGTCTTGGTATTTCTATATAATTCTAATTTCCAATAAAGCAAAATCTCAGTCAGCCACATAAACAAATCCCCTCCCGACTTCTGACTTCGATGTAATTAGTTGGGACGGGAAGGTTTCACTTGTAAAGATATTGACAGTTTTGGTTCTGTGAAAGTGTCTTGTTATTTATGTCGTGTTCCCAGATGGAAAATATTTGTAATGGAGCAGCATTACAACATAAAGCTTACTGTGAATCATATACCAAGTGCCACCTTCAGTATGCCTTGTGCCTCTTGCTTTTTTGTTACGGCCCTTCATACTTTCAAATAAGGGCTTCTCTATGCATGCTTGCAGACAACAGTGATGAAACTAATCGTCCTTGAAAATACTGCCTGCTTTTAAGTGTCCTGTTATTGTTTTATACTATGATTCATGTATTAAATTGTCAGGCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCATTCTTGATGTATTGCCGTGCTCAGCAACGTGAATGGAATCCCAAAATCAAGCACTTGTTCGGTTTTTT-CCCCTATGTGAAGATTGAGAAACCG</genome_strand>
        <mrna_strand>ATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCCGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCATTCTTGATGTATTCCCGTGCTCAGCAACGTGAATGGAATCCCCAAACAAAGCACTTGTTCGGTTTTTTCCCCCTATGTGAAGATTGAGAAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E348080" ref_strand="+" ref_description="SGN-E348080 [cTOF-31-N13]">
      <seq>agaggagagagaaagcgagagagaggagagagagatcttgtgtgtgtttatatatgtatatgcacacacatatatatattcaaagaagcaaatctgtgggaatattttttggggtggaatttggaaattggatctgacgttgaaagattgcagaatggaagatggcatattcttttggggccctgtaacatctaaagagtggtgtgagccaaattatgtgcagtcatcctatattgcagaattcttcaacaccatttcaaatatcccatgcattctcttggctcttattggtcttgtcaacgcccttagacaacggtttgagaaaaggttcagtgtccttcatatgtcaaacataatacttgccttggggagtatgacatatcatgccactttgcggcagatgcaacagcaaggtgatgagacaccaatggtctgggagatgcttctgtatatctatatcctctattcaccagattggcattatcggagtacgatgcccacctttctgttcctttatggtgcgctctttgccattgtgcattcacagcttcgctttggcattggtttcaaagtacactacgcacttttgtgccttctttgcgctcctcgtgcatataagtattacattcatacagaagacacattggctaagcgcctcgcaaagttatacgtggncaacttgttggtcggagctgcttgctggctatgtgatcgattattctgcaagcagattcagggctggtacattaatccacagggccatgcagtctggcacgtcttaatgggcttcaactcgtactttgcaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="6309" stop="1239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6009" g_stop="5864" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5863" i_stop="3605" i_length="2259">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3604" g_stop="3349" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="402" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3348" i_stop="1948" i_length="1401">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1947" g_stop="1539" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="810" r_length="408" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E348080" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6009" e_stop="5864"/>
          <exon e_start="3604" e_stop="3349"/>
          <exon e_start="1947" e_stop="1539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAGAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAGGTTTGTTTTTGTATTTTTCTGAATTTTTTCTTAGTATAAATAGAAGATTGCGTATGCATATTTTGCTTTTTGATATGTTGCTAATTTGTGTTTTGTGGAGAATTTTGGTTTATTTGTGGGATCTAATGGTGATAGGTTGGTTTACATTATGAGGGTGTTTTTTTGATATGGGAATAGTGTTAATGGTGATATTGTAGTTTGAATTAAGCAGTGTAGGGATTTGTGGGTGGTTTAATGGGGTAAAAAACGGATCTTTGGAGTTGGGTTTTGTTGATTGTTGAATTATTTGTGGGTTTGGTGGAAATTTGATCGAGTTTTGTATTTAGGGGTGTTTGTTGGAGAGGATTGATGATATCTGGTGTACATGCCCAGTTTGGATTAGTTGAGCTGGCAGTATAAATGAAAATTGAAAACAATTAAGGTTGAGATTGTAGCTGAAAGATGGGTTTTAGATTAAGCAGTAGGAGAGTATAGTTGTTATCGTCTGCACCTGTGGTTGTGTGCTGTAAGAGATAGTCGAGGTGGGTGCAAGTTGGGATAATCACCACCACAGTCTTAATTGAAAAACAAATAAAAAAACAGAAAGGTTCGAAATTGTAGCTGAAGATGGGTGTTTAGATAGGACTGCTTGGTATATTTTGTGTGTGGGGGTGGGGGGTGGGGGGGAATGCTTGATAGCTCATGATAATTTTGATGATGGGTTTCACACATTAATTCAAGTGAGTTTGACTTTGTGGAACTTCAAGGTTTCACACATTATTAATTCGTGAAAGAGACGAATAAGTTCTCTTGAATCTAACTTGTTGAGTTAATGGTTTGTGGCAAAGCTTCCTTCTTAGATTTTTTTGAGGAACAGTTAGTCTAGGAAGTGTTGTATTGAAGTAGTTTCTCGAAGTGGAAGTATTTGTGTCATGCTTTTGGCTTGACTTTCTTTTTTTGTATCATAATTAATTAAATTAGTTTTTAGGTGTTTGTTGTACATTCAATCAATTCAACTATAAGCACCTGCTGGATCTTTTCATCTAAGAATTGAAAGAATAAGCCCTTTGTTTTTCAACAAATTGTAGGAAGGTTCATTTTTGTCTTTTGCTACTACCTTTGTTGGTACAGTGGTCACTATGGAATTTTCTAATTGTATCAGTCCTTTATTGTACACTATTCTTAATGGTTTGTACCCACTTCTGGTGCATATGGAAAATGGATAGACTTTCTTTTTTGTTTGTACTGAAACTGAAAATTTAGCAATTTTACTTAAAAGTTGGTGGTAGTGTTTCTTGGGAGAAAGCATCAAGCAAATATCAACCTCTATGCAGGTATAATAGTTCAGCAATATATTTGATCTTCCCACTGGAATTGATATCATCCGGTCTTCTATGGGAGCAAATATGTTTCAGTTTTTAGTGGATATATTTTTTTTAAAAGAAATCTGCATTGGAAAAGAATGAGATTTGTCAATTAATTTTTTGATAAGGAGAAATAAGTATGCATACTTCATATTTACTCCATTTGTGACCCACTTTAGGGACATAAGTTTCAATCTAGCCAATTTTGTGTGTGATATTTAATCTCAGAATGTTGATTGCCAAAGTCACGTGAAGTTAATATGAGATAGAGAGTATGAAAGAGCTAGACATAAAGAACAAGAAGTTATTCGAGATCAAACTCAAGCATTCACGGCATTTTTAGACCTGAGGCAAAATTTTAAGGATTGTCGATAATTTCCTGAAGTTAACATTAAAGAAGTGTCACTTAAACAGCCATGCGCACTAGTATAACGTTTACACAGAGATCCTGTGTTCCAGTGTCATGTGGATAACGCGACTCATTTTGGTCTCGAGTTCTTCGGTCCCTGCTCTCTCTCCTTTTTTAGTTTCATGTTGTGCCCATTCTGTGATTCATCCTAGATCATTGTTTCTGTGCATAGTATTTGTATAGAAGATTATAATCGGTAGTGTGGCAACTTTTTAGTTCATACACATGTAATATTGCTGATTATCATCCTTCTAAGGATATATTTAGAAAATTTGAATCTCTTTAATTAATCCTTAACTATTGAGACATGCTAAAATGCTTGAGTAATTTTCTTGCATCAAAACTGCTAGCTAAGTTGCTCGGACTCTCCTAAAATGTTGTGGCACTTGTGTTGGATCCTTTAGAAATGCACCACTTTTGAGGGGTCTGACACACACCCGATGACATTTTTGAAGAGTCCGAGCAATGTAGACTGCAAGTGCCTACAAGCTGACTTTTTCAGGATAGATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGATGTAAGCATTCTCTCCATTCTCTATGTTGGATTCTCTGTAAAATTTGTTAGGTGTACAATAGACATGTATGTATGTATGTGTTAATCATCATTTGTTTGCTAAGGTACGAGGAAATTGACTCAATAGGATGCTCGATAGCCTCATTTTTTGAGATGTTTATATTGTTAAATCTCTGTAGAACTATATGAGAACAGGAAGATGGTAAACTGAAGATATTATATCATGCGTGCTAATGTGATTACAACTATCCCCTACTTTATGCAAATGAGCACTTGTATCTTGACCTATCAGCCAATCTATGCTTGCTTAGACTCTTCACAAATGTCACCATACTGTGTCGGATCCTCCAAAAATGCATTACTGAATGGCCCGAGACACACCTTTTGATATTTTGAAGAGTCTGAGCAACTTAGCAGCCAATAATCTCCTGCTGGAATGAGGTCACTGCCTTCCGTGCCCCACCCCCCTTCTTGTATGATTTTTCTATGGTCATGTTTTTTTTATAGACTGAATCTGTTAGAGAATACACAGGTAGAAGATTTGGAATTTTTCTTATTTTCTTGTATATTGGTATCTGAAGTATTGACTTGTGAAGTTTGAGTTCGTTGCAATCACAACGTCATCTAATCTGTTTCGCCACTACCTTTCTTTTGAAAAATTGATTGGCATATTTCTTGTAGATGAGCACAAATTGCATACTTTTTCAGTTTATGGGTAGGATGATCCTATCTATTGTTCAAGCCACAACTCAATATTCCAAACTCCTAGTTACTGATTCTTGAAAACTATAGAAGTGCCAAAGCTAATTCTGGTTTTCAAAAAGATAGTGGGAAAGAGGAGCACAAGGATGCATGGTTTGATCCTGTCAAGAAGTTTTTAGTGCATTGAGTAATAATCTCCATGACAGAAATAGTGATAGACCAACTGATTTGAGTCATTTTAAGAAAGTCTATGTCAAATATGCCATAACAATGTCTTGGTATTTCTATATAATTCTAATTTCCAATAAAGCAAAATCTCAGTCAGCCACATAAACAAATCCCCTCCCGACTTCTGACTTCGATGTAATTAGTTGGGACGGGAAGGTTTCACTTGTAAAGATATTGACAGTTTTGGTTCTGTGAAAGTGTCTTGTTATTTATGTCGTGTTCCCAGATGGAAAATATTTGTAATGGAGCAGCATTACAACATAAAGCTTACTGTGAATCATATACCAAGTGCCACCTTCAGTATGCCTTGTGCCTCTTGCTTTTTTGTTACGGCCCTTCATACTTTCAAATAAGGGCTTCTCTATGCATGCTTGCAGACAACAGTGATGAAACTAATCGTCCTTGAAAATACTGCCTGCTTTTAAGTGTCCTGTTATTGTTTTATACTATGATTCATGTATTAAATTGTCAGGCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGG-CAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCA</genome_strand>
        <mrna_strand>AGAGGAGAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGNCAAC-TTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGC-AATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E340066" ref_strand="+" ref_description="SGN-E340066 [cTOF-3-H9]">
      <seq>gagaaagcgagagagaggagagagagatcttgtgtgtgtttatatatgtatatgcacacacatatatatattcaaagaagcaaatctgtgggaatattttttggggtggaatttggaaattggatctgacgttgaaagattgcagaatggaagatggcatattcttttggggccctgtaacatctaaagagtggtgtgagccaaattatgtgcagtcatcctatattgcagaattcttcaacaccatttcaaatatcccatgcattctcttggctcttattggtcttgtcaacgcccttagacaacggtttgagaaaaggttcagtgtccttcatatgtcaaacataatacttgccttggggagtatgacatatcatgccactttgcggcagatgcaacagcaaggtgatgagacaccaatggtctgggagatgcttctgtatatctatatcctctattcaccagattggcattatcggagtacgatgcccacctttctgttcctttatggtgcgctctttgccattgtgcattcacagcttcgctttggcattggtttcaaagtacactacgcacttttgtgccttctttgcgctcctcgtgcatataagtattacattcatacagaagacacattggctaagcgcctcgcaaagttatacgtggcaactttgttggtcggagctgcttgctggctatgtgatcgattattctgcaagcagattcagggctggtacattaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="6301" stop="1298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6001" g_stop="5864" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5863" i_stop="3605" i_length="2259">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3604" g_stop="3349" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="394" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3348" i_stop="1948" i_length="1401">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1947" g_stop="1598" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="744" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E340066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6001" e_stop="5864"/>
          <exon e_start="3604" e_stop="3349"/>
          <exon e_start="1947" e_stop="1598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAGGTTTGTTTTTGTATTTTTCTGAATTTTTTCTTAGTATAAATAGAAGATTGCGTATGCATATTTTGCTTTTTGATATGTTGCTAATTTGTGTTTTGTGGAGAATTTTGGTTTATTTGTGGGATCTAATGGTGATAGGTTGGTTTACATTATGAGGGTGTTTTTTTGATATGGGAATAGTGTTAATGGTGATATTGTAGTTTGAATTAAGCAGTGTAGGGATTTGTGGGTGGTTTAATGGGGTAAAAAACGGATCTTTGGAGTTGGGTTTTGTTGATTGTTGAATTATTTGTGGGTTTGGTGGAAATTTGATCGAGTTTTGTATTTAGGGGTGTTTGTTGGAGAGGATTGATGATATCTGGTGTACATGCCCAGTTTGGATTAGTTGAGCTGGCAGTATAAATGAAAATTGAAAACAATTAAGGTTGAGATTGTAGCTGAAAGATGGGTTTTAGATTAAGCAGTAGGAGAGTATAGTTGTTATCGTCTGCACCTGTGGTTGTGTGCTGTAAGAGATAGTCGAGGTGGGTGCAAGTTGGGATAATCACCACCACAGTCTTAATTGAAAAACAAATAAAAAAACAGAAAGGTTCGAAATTGTAGCTGAAGATGGGTGTTTAGATAGGACTGCTTGGTATATTTTGTGTGTGGGGGTGGGGGGTGGGGGGGAATGCTTGATAGCTCATGATAATTTTGATGATGGGTTTCACACATTAATTCAAGTGAGTTTGACTTTGTGGAACTTCAAGGTTTCACACATTATTAATTCGTGAAAGAGACGAATAAGTTCTCTTGAATCTAACTTGTTGAGTTAATGGTTTGTGGCAAAGCTTCCTTCTTAGATTTTTTTGAGGAACAGTTAGTCTAGGAAGTGTTGTATTGAAGTAGTTTCTCGAAGTGGAAGTATTTGTGTCATGCTTTTGGCTTGACTTTCTTTTTTTGTATCATAATTAATTAAATTAGTTTTTAGGTGTTTGTTGTACATTCAATCAATTCAACTATAAGCACCTGCTGGATCTTTTCATCTAAGAATTGAAAGAATAAGCCCTTTGTTTTTCAACAAATTGTAGGAAGGTTCATTTTTGTCTTTTGCTACTACCTTTGTTGGTACAGTGGTCACTATGGAATTTTCTAATTGTATCAGTCCTTTATTGTACACTATTCTTAATGGTTTGTACCCACTTCTGGTGCATATGGAAAATGGATAGACTTTCTTTTTTGTTTGTACTGAAACTGAAAATTTAGCAATTTTACTTAAAAGTTGGTGGTAGTGTTTCTTGGGAGAAAGCATCAAGCAAATATCAACCTCTATGCAGGTATAATAGTTCAGCAATATATTTGATCTTCCCACTGGAATTGATATCATCCGGTCTTCTATGGGAGCAAATATGTTTCAGTTTTTAGTGGATATATTTTTTTTAAAAGAAATCTGCATTGGAAAAGAATGAGATTTGTCAATTAATTTTTTGATAAGGAGAAATAAGTATGCATACTTCATATTTACTCCATTTGTGACCCACTTTAGGGACATAAGTTTCAATCTAGCCAATTTTGTGTGTGATATTTAATCTCAGAATGTTGATTGCCAAAGTCACGTGAAGTTAATATGAGATAGAGAGTATGAAAGAGCTAGACATAAAGAACAAGAAGTTATTCGAGATCAAACTCAAGCATTCACGGCATTTTTAGACCTGAGGCAAAATTTTAAGGATTGTCGATAATTTCCTGAAGTTAACATTAAAGAAGTGTCACTTAAACAGCCATGCGCACTAGTATAACGTTTACACAGAGATCCTGTGTTCCAGTGTCATGTGGATAACGCGACTCATTTTGGTCTCGAGTTCTTCGGTCCCTGCTCTCTCTCCTTTTTTAGTTTCATGTTGTGCCCATTCTGTGATTCATCCTAGATCATTGTTTCTGTGCATAGTATTTGTATAGAAGATTATAATCGGTAGTGTGGCAACTTTTTAGTTCATACACATGTAATATTGCTGATTATCATCCTTCTAAGGATATATTTAGAAAATTTGAATCTCTTTAATTAATCCTTAACTATTGAGACATGCTAAAATGCTTGAGTAATTTTCTTGCATCAAAACTGCTAGCTAAGTTGCTCGGACTCTCCTAAAATGTTGTGGCACTTGTGTTGGATCCTTTAGAAATGCACCACTTTTGAGGGGTCTGACACACACCCGATGACATTTTTGAAGAGTCCGAGCAATGTAGACTGCAAGTGCCTACAAGCTGACTTTTTCAGGATAGATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGATGTAAGCATTCTCTCCATTCTCTATGTTGGATTCTCTGTAAAATTTGTTAGGTGTACAATAGACATGTATGTATGTATGTGTTAATCATCATTTGTTTGCTAAGGTACGAGGAAATTGACTCAATAGGATGCTCGATAGCCTCATTTTTTGAGATGTTTATATTGTTAAATCTCTGTAGAACTATATGAGAACAGGAAGATGGTAAACTGAAGATATTATATCATGCGTGCTAATGTGATTACAACTATCCCCTACTTTATGCAAATGAGCACTTGTATCTTGACCTATCAGCCAATCTATGCTTGCTTAGACTCTTCACAAATGTCACCATACTGTGTCGGATCCTCCAAAAATGCATTACTGAATGGCCCGAGACACACCTTTTGATATTTTGAAGAGTCTGAGCAACTTAGCAGCCAATAATCTCCTGCTGGAATGAGGTCACTGCCTTCCGTGCCCCACCCCCCTTCTTGTATGATTTTTCTATGGTCATGTTTTTTTTATAGACTGAATCTGTTAGAGAATACACAGGTAGAAGATTTGGAATTTTTCTTATTTTCTTGTATATTGGTATCTGAAGTATTGACTTGTGAAGTTTGAGTTCGTTGCAATCACAACGTCATCTAATCTGTTTCGCCACTACCTTTCTTTTGAAAAATTGATTGGCATATTTCTTGTAGATGAGCACAAATTGCATACTTTTTCAGTTTATGGGTAGGATGATCCTATCTATTGTTCAAGCCACAACTCAATATTCCAAACTCCTAGTTACTGATTCTTGAAAACTATAGAAGTGCCAAAGCTAATTCTGGTTTTCAAAAAGATAGTGGGAAAGAGGAGCACAAGGATGCATGGTTTGATCCTGTCAAGAAGTTTTTAGTGCATTGAGTAATAATCTCCATGACAGAAATAGTGATAGACCAACTGATTTGAGTCATTTTAAGAAAGTCTATGTCAAATATGCCATAACAATGTCTTGGTATTTCTATATAATTCTAATTTCCAATAAAGCAAAATCTCAGTCAGCCACATAAACAAATCCCCTCCCGACTTCTGACTTCGATGTAATTAGTTGGGACGGGAAGGTTTCACTTGTAAAGATATTGACAGTTTTGGTTCTGTGAAAGTGTCTTGTTATTTATGTCGTGTTCCCAGATGGAAAATATTTGTAATGGAGCAGCATTACAACATAAAGCTTACTGTGAATCATATACCAAGTGCCACCTTCAGTATGCCTTGTGCCTCTTGCTTTTTTGTTACGGCCCTTCATACTTTCAAATAAGGGCTTCTCTATGCATGCTTGCAGACAACAGTGATGAAACTAATCGTCCTTGAAAATACTGCCTGCTTTTAAGTGTCCTGTTATTGTTTTATACTATGATTCATGTATTAAATTGTCAGGCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATC</genome_strand>
        <mrna_strand>GAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E245328" ref_strand="+" ref_description="SGN-E245328 [cLEF-44-B6]">
      <seq>gagagaaagcgagagagaggagagagagatcttgtgtgtgtttatatatgtatatgcacacacatatatatattcaaagaagcaaatctgtgggaatattttttggggtggaatttggaaattggatctgacgttgaaagattgcagaatggaagatggcatattcttttggggccctgtaacatctaaagagtggtgtgagccaaattatgtgcagtcatcctatattgcagaattcttcaacaccatttcaaatatcccatgcattctcttggctcttattggtcttgtcaacgcccttagacaacggtttgagaaaaggttcagtgtccttcatatgtcaaacataatacttgccttggggagtatgacatatcatgccactttgcggcagatgcaacagcaaggtgatgagacaccaatggtctgggagatgcttctgtatatctatatcctctattcaccagattggcattatcggagtacgatgcccacctttctgttcctttatggtgcgctctttgccattgtgcattcacagcttcgctttggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="6303" stop="1489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6003" g_stop="5864" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5863" i_stop="3605" i_length="2259">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3604" g_stop="3349" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="396" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3348" i_stop="1948" i_length="1401">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1947" g_stop="1789" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="555" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E245328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6003" e_stop="5864"/>
          <exon e_start="3604" e_stop="3349"/>
          <exon e_start="1947" e_stop="1789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAGGTTTGTTTTTGTATTTTTCTGAATTTTTTCTTAGTATAAATAGAAGATTGCGTATGCATATTTTGCTTTTTGATATGTTGCTAATTTGTGTTTTGTGGAGAATTTTGGTTTATTTGTGGGATCTAATGGTGATAGGTTGGTTTACATTATGAGGGTGTTTTTTTGATATGGGAATAGTGTTAATGGTGATATTGTAGTTTGAATTAAGCAGTGTAGGGATTTGTGGGTGGTTTAATGGGGTAAAAAACGGATCTTTGGAGTTGGGTTTTGTTGATTGTTGAATTATTTGTGGGTTTGGTGGAAATTTGATCGAGTTTTGTATTTAGGGGTGTTTGTTGGAGAGGATTGATGATATCTGGTGTACATGCCCAGTTTGGATTAGTTGAGCTGGCAGTATAAATGAAAATTGAAAACAATTAAGGTTGAGATTGTAGCTGAAAGATGGGTTTTAGATTAAGCAGTAGGAGAGTATAGTTGTTATCGTCTGCACCTGTGGTTGTGTGCTGTAAGAGATAGTCGAGGTGGGTGCAAGTTGGGATAATCACCACCACAGTCTTAATTGAAAAACAAATAAAAAAACAGAAAGGTTCGAAATTGTAGCTGAAGATGGGTGTTTAGATAGGACTGCTTGGTATATTTTGTGTGTGGGGGTGGGGGGTGGGGGGGAATGCTTGATAGCTCATGATAATTTTGATGATGGGTTTCACACATTAATTCAAGTGAGTTTGACTTTGTGGAACTTCAAGGTTTCACACATTATTAATTCGTGAAAGAGACGAATAAGTTCTCTTGAATCTAACTTGTTGAGTTAATGGTTTGTGGCAAAGCTTCCTTCTTAGATTTTTTTGAGGAACAGTTAGTCTAGGAAGTGTTGTATTGAAGTAGTTTCTCGAAGTGGAAGTATTTGTGTCATGCTTTTGGCTTGACTTTCTTTTTTTGTATCATAATTAATTAAATTAGTTTTTAGGTGTTTGTTGTACATTCAATCAATTCAACTATAAGCACCTGCTGGATCTTTTCATCTAAGAATTGAAAGAATAAGCCCTTTGTTTTTCAACAAATTGTAGGAAGGTTCATTTTTGTCTTTTGCTACTACCTTTGTTGGTACAGTGGTCACTATGGAATTTTCTAATTGTATCAGTCCTTTATTGTACACTATTCTTAATGGTTTGTACCCACTTCTGGTGCATATGGAAAATGGATAGACTTTCTTTTTTGTTTGTACTGAAACTGAAAATTTAGCAATTTTACTTAAAAGTTGGTGGTAGTGTTTCTTGGGAGAAAGCATCAAGCAAATATCAACCTCTATGCAGGTATAATAGTTCAGCAATATATTTGATCTTCCCACTGGAATTGATATCATCCGGTCTTCTATGGGAGCAAATATGTTTCAGTTTTTAGTGGATATATTTTTTTTAAAAGAAATCTGCATTGGAAAAGAATGAGATTTGTCAATTAATTTTTTGATAAGGAGAAATAAGTATGCATACTTCATATTTACTCCATTTGTGACCCACTTTAGGGACATAAGTTTCAATCTAGCCAATTTTGTGTGTGATATTTAATCTCAGAATGTTGATTGCCAAAGTCACGTGAAGTTAATATGAGATAGAGAGTATGAAAGAGCTAGACATAAAGAACAAGAAGTTATTCGAGATCAAACTCAAGCATTCACGGCATTTTTAGACCTGAGGCAAAATTTTAAGGATTGTCGATAATTTCCTGAAGTTAACATTAAAGAAGTGTCACTTAAACAGCCATGCGCACTAGTATAACGTTTACACAGAGATCCTGTGTTCCAGTGTCATGTGGATAACGCGACTCATTTTGGTCTCGAGTTCTTCGGTCCCTGCTCTCTCTCCTTTTTTAGTTTCATGTTGTGCCCATTCTGTGATTCATCCTAGATCATTGTTTCTGTGCATAGTATTTGTATAGAAGATTATAATCGGTAGTGTGGCAACTTTTTAGTTCATACACATGTAATATTGCTGATTATCATCCTTCTAAGGATATATTTAGAAAATTTGAATCTCTTTAATTAATCCTTAACTATTGAGACATGCTAAAATGCTTGAGTAATTTTCTTGCATCAAAACTGCTAGCTAAGTTGCTCGGACTCTCCTAAAATGTTGTGGCACTTGTGTTGGATCCTTTAGAAATGCACCACTTTTGAGGGGTCTGACACACACCCGATGACATTTTTGAAGAGTCCGAGCAATGTAGACTGCAAGTGCCTACAAGCTGACTTTTTCAGGATAGATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGATGTAAGCATTCTCTCCATTCTCTATGTTGGATTCTCTGTAAAATTTGTTAGGTGTACAATAGACATGTATGTATGTATGTGTTAATCATCATTTGTTTGCTAAGGTACGAGGAAATTGACTCAATAGGATGCTCGATAGCCTCATTTTTTGAGATGTTTATATTGTTAAATCTCTGTAGAACTATATGAGAACAGGAAGATGGTAAACTGAAGATATTATATCATGCGTGCTAATGTGATTACAACTATCCCCTACTTTATGCAAATGAGCACTTGTATCTTGACCTATCAGCCAATCTATGCTTGCTTAGACTCTTCACAAATGTCACCATACTGTGTCGGATCCTCCAAAAATGCATTACTGAATGGCCCGAGACACACCTTTTGATATTTTGAAGAGTCTGAGCAACTTAGCAGCCAATAATCTCCTGCTGGAATGAGGTCACTGCCTTCCGTGCCCCACCCCCCTTCTTGTATGATTTTTCTATGGTCATGTTTTTTTTATAGACTGAATCTGTTAGAGAATACACAGGTAGAAGATTTGGAATTTTTCTTATTTTCTTGTATATTGGTATCTGAAGTATTGACTTGTGAAGTTTGAGTTCGTTGCAATCACAACGTCATCTAATCTGTTTCGCCACTACCTTTCTTTTGAAAAATTGATTGGCATATTTCTTGTAGATGAGCACAAATTGCATACTTTTTCAGTTTATGGGTAGGATGATCCTATCTATTGTTCAAGCCACAACTCAATATTCCAAACTCCTAGTTACTGATTCTTGAAAACTATAGAAGTGCCAAAGCTAATTCTGGTTTTCAAAAAGATAGTGGGAAAGAGGAGCACAAGGATGCATGGTTTGATCCTGTCAAGAAGTTTTTAGTGCATTGAGTAATAATCTCCATGACAGAAATAGTGATAGACCAACTGATTTGAGTCATTTTAAGAAAGTCTATGTCAAATATGCCATAACAATGTCTTGGTATTTCTATATAATTCTAATTTCCAATAAAGCAAAATCTCAGTCAGCCACATAAACAAATCCCCTCCCGACTTCTGACTTCGATGTAATTAGTTGGGACGGGAAGGTTTCACTTGTAAAGATATTGACAGTTTTGGTTCTGTGAAAGTGTCTTGTTATTTATGTCGTGTTCCCAGATGGAAAATATTTGTAATGGAGCAGCATTACAACATAAAGCTTACTGTGAATCATATACCAAGTGCCACCTTCAGTATGCCTTGTGCCTCTTGCTTTTTTGTTACGGCCCTTCATACTTTCAAATAAGGGCTTCTCTATGCATGCTTGCAGACAACAGTGATGAAACTAATCGTCCTTGAAAATACTGCCTGCTTTTAAGTGTCCTGTTATTGTTTTATACTATGATTCATGTATTAAATTGTCAGGCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCAT</genome_strand>
        <mrna_strand>GAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E209376" ref_strand="+" ref_description="SGN-E209376 [cLEC-53-G4]">
      <seq>aagcgagagagaggagagagagatcttgtgtgtgtttatatatgtatatgcacacacatatatatattcaaagaagcaaatctgtgggaatattttttggggtggaatttggaaattggatctgacgttgaaagattgcagaatggaagatggcatattcttttggggccctgtaacatctaaagagtggtgtgagccaaattatgtgcagtcatcctatattgcagaattcttcaacaccatttcaaatatcccatgcattctcttggctcttattggtcttgtcaacgcccttagacaacggtttgagaaaaggttcagtgtccttcatatgtcaaacataatacttgccttggggagtatgacatatcatgccactttgcggcagatgcaacagcaaggtgatgagacaccaatggtctgggagatgcttctgtatatctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="6297" stop="1591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5997" g_stop="5864" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5863" i_stop="3605" i_length="2259">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3604" g_stop="3349" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="390" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3348" i_stop="1948" i_length="1401">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1947" g_stop="1891" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="447" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E209376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5997" e_stop="5864"/>
          <exon e_start="3604" e_stop="3349"/>
          <exon e_start="1947" e_stop="1891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAGGTTTGTTTTTGTATTTTTCTGAATTTTTTCTTAGTATAAATAGAAGATTGCGTATGCATATTTTGCTTTTTGATATGTTGCTAATTTGTGTTTTGTGGAGAATTTTGGTTTATTTGTGGGATCTAATGGTGATAGGTTGGTTTACATTATGAGGGTGTTTTTTTGATATGGGAATAGTGTTAATGGTGATATTGTAGTTTGAATTAAGCAGTGTAGGGATTTGTGGGTGGTTTAATGGGGTAAAAAACGGATCTTTGGAGTTGGGTTTTGTTGATTGTTGAATTATTTGTGGGTTTGGTGGAAATTTGATCGAGTTTTGTATTTAGGGGTGTTTGTTGGAGAGGATTGATGATATCTGGTGTACATGCCCAGTTTGGATTAGTTGAGCTGGCAGTATAAATGAAAATTGAAAACAATTAAGGTTGAGATTGTAGCTGAAAGATGGGTTTTAGATTAAGCAGTAGGAGAGTATAGTTGTTATCGTCTGCACCTGTGGTTGTGTGCTGTAAGAGATAGTCGAGGTGGGTGCAAGTTGGGATAATCACCACCACAGTCTTAATTGAAAAACAAATAAAAAAACAGAAAGGTTCGAAATTGTAGCTGAAGATGGGTGTTTAGATAGGACTGCTTGGTATATTTTGTGTGTGGGGGTGGGGGGTGGGGGGGAATGCTTGATAGCTCATGATAATTTTGATGATGGGTTTCACACATTAATTCAAGTGAGTTTGACTTTGTGGAACTTCAAGGTTTCACACATTATTAATTCGTGAAAGAGACGAATAAGTTCTCTTGAATCTAACTTGTTGAGTTAATGGTTTGTGGCAAAGCTTCCTTCTTAGATTTTTTTGAGGAACAGTTAGTCTAGGAAGTGTTGTATTGAAGTAGTTTCTCGAAGTGGAAGTATTTGTGTCATGCTTTTGGCTTGACTTTCTTTTTTTGTATCATAATTAATTAAATTAGTTTTTAGGTGTTTGTTGTACATTCAATCAATTCAACTATAAGCACCTGCTGGATCTTTTCATCTAAGAATTGAAAGAATAAGCCCTTTGTTTTTCAACAAATTGTAGGAAGGTTCATTTTTGTCTTTTGCTACTACCTTTGTTGGTACAGTGGTCACTATGGAATTTTCTAATTGTATCAGTCCTTTATTGTACACTATTCTTAATGGTTTGTACCCACTTCTGGTGCATATGGAAAATGGATAGACTTTCTTTTTTGTTTGTACTGAAACTGAAAATTTAGCAATTTTACTTAAAAGTTGGTGGTAGTGTTTCTTGGGAGAAAGCATCAAGCAAATATCAACCTCTATGCAGGTATAATAGTTCAGCAATATATTTGATCTTCCCACTGGAATTGATATCATCCGGTCTTCTATGGGAGCAAATATGTTTCAGTTTTTAGTGGATATATTTTTTTTAAAAGAAATCTGCATTGGAAAAGAATGAGATTTGTCAATTAATTTTTTGATAAGGAGAAATAAGTATGCATACTTCATATTTACTCCATTTGTGACCCACTTTAGGGACATAAGTTTCAATCTAGCCAATTTTGTGTGTGATATTTAATCTCAGAATGTTGATTGCCAAAGTCACGTGAAGTTAATATGAGATAGAGAGTATGAAAGAGCTAGACATAAAGAACAAGAAGTTATTCGAGATCAAACTCAAGCATTCACGGCATTTTTAGACCTGAGGCAAAATTTTAAGGATTGTCGATAATTTCCTGAAGTTAACATTAAAGAAGTGTCACTTAAACAGCCATGCGCACTAGTATAACGTTTACACAGAGATCCTGTGTTCCAGTGTCATGTGGATAACGCGACTCATTTTGGTCTCGAGTTCTTCGGTCCCTGCTCTCTCTCCTTTTTTAGTTTCATGTTGTGCCCATTCTGTGATTCATCCTAGATCATTGTTTCTGTGCATAGTATTTGTATAGAAGATTATAATCGGTAGTGTGGCAACTTTTTAGTTCATACACATGTAATATTGCTGATTATCATCCTTCTAAGGATATATTTAGAAAATTTGAATCTCTTTAATTAATCCTTAACTATTGAGACATGCTAAAATGCTTGAGTAATTTTCTTGCATCAAAACTGCTAGCTAAGTTGCTCGGACTCTCCTAAAATGTTGTGGCACTTGTGTTGGATCCTTTAGAAATGCACCACTTTTGAGGGGTCTGACACACACCCGATGACATTTTTGAAGAGTCCGAGCAATGTAGACTGCAAGTGCCTACAAGCTGACTTTTTCAGGATAGATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGATGTAAGCATTCTCTCCATTCTCTATGTTGGATTCTCTGTAAAATTTGTTAGGTGTACAATAGACATGTATGTATGTATGTGTTAATCATCATTTGTTTGCTAAGGTACGAGGAAATTGACTCAATAGGATGCTCGATAGCCTCATTTTTTGAGATGTTTATATTGTTAAATCTCTGTAGAACTATATGAGAACAGGAAGATGGTAAACTGAAGATATTATATCATGCGTGCTAATGTGATTACAACTATCCCCTACTTTATGCAAATGAGCACTTGTATCTTGACCTATCAGCCAATCTATGCTTGCTTAGACTCTTCACAAATGTCACCATACTGTGTCGGATCCTCCAAAAATGCATTACTGAATGGCCCGAGACACACCTTTTGATATTTTGAAGAGTCTGAGCAACTTAGCAGCCAATAATCTCCTGCTGGAATGAGGTCACTGCCTTCCGTGCCCCACCCCCCTTCTTGTATGATTTTTCTATGGTCATGTTTTTTTTATAGACTGAATCTGTTAGAGAATACACAGGTAGAAGATTTGGAATTTTTCTTATTTTCTTGTATATTGGTATCTGAAGTATTGACTTGTGAAGTTTGAGTTCGTTGCAATCACAACGTCATCTAATCTGTTTCGCCACTACCTTTCTTTTGAAAAATTGATTGGCATATTTCTTGTAGATGAGCACAAATTGCATACTTTTTCAGTTTATGGGTAGGATGATCCTATCTATTGTTCAAGCCACAACTCAATATTCCAAACTCCTAGTTACTGATTCTTGAAAACTATAGAAGTGCCAAAGCTAATTCTGGTTTTCAAAAAGATAGTGGGAAAGAGGAGCACAAGGATGCATGGTTTGATCCTGTCAAGAAGTTTTTAGTGCATTGAGTAATAATCTCCATGACAGAAATAGTGATAGACCAACTGATTTGAGTCATTTTAAGAAAGTCTATGTCAAATATGCCATAACAATGTCTTGGTATTTCTATATAATTCTAATTTCCAATAAAGCAAAATCTCAGTCAGCCACATAAACAAATCCCCTCCCGACTTCTGACTTCGATGTAATTAGTTGGGACGGGAAGGTTTCACTTGTAAAGATATTGACAGTTTTGGTTCTGTGAAAGTGTCTTGTTATTTATGTCGTGTTCCCAGATGGAAAATATTTGTAATGGAGCAGCATTACAACATAAAGCTTACTGTGAATCATATACCAAGTGCCACCTTCAGTATGCCTTGTGCCTCTTGCTTTTTTGTTACGGCCCTTCATACTTTCAAATAAGGGCTTCTCTATGCATGCTTGCAGACAACAGTGATGAAACTAATCGTCCTTGAAAATACTGCCTGCTTTTAAGTGTCCTGTTATTGTTTTATACTATGATTCATGTATTAAATTGTCAGGCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATAT</genome_strand>
        <mrna_strand>AAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E214373" ref_strand="+" ref_description="SGN-E214373 [cLEC-77-A8]">
      <seq>gagagaaagcgagagagaggagagagagatcttgtgtgtgtttatatatgtatatgcacacacatatatatattcaaagaagcaaatctgtgggaatattttttggggtggaatttggaaattggatctgacgttgaaagattgcagaatggaagatggcatattcttttggggccctgtaacatctaaagagtggtgtgagccaaattatgtgcagtcatcctatattgcagaatcttcaacacatttcaaatatcccatgcattctcttgggctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="6303" stop="3166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6003" g_stop="5864" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5863" i_stop="3605" i_length="2259">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3604" g_stop="3465" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="279" r_length="139" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E214373" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6003" e_stop="5864"/>
          <exon e_start="3604" e_stop="3465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAGGTTTGTTTTTGTATTTTTCTGAATTTTTTCTTAGTATAAATAGAAGATTGCGTATGCATATTTTGCTTTTTGATATGTTGCTAATTTGTGTTTTGTGGAGAATTTTGGTTTATTTGTGGGATCTAATGGTGATAGGTTGGTTTACATTATGAGGGTGTTTTTTTGATATGGGAATAGTGTTAATGGTGATATTGTAGTTTGAATTAAGCAGTGTAGGGATTTGTGGGTGGTTTAATGGGGTAAAAAACGGATCTTTGGAGTTGGGTTTTGTTGATTGTTGAATTATTTGTGGGTTTGGTGGAAATTTGATCGAGTTTTGTATTTAGGGGTGTTTGTTGGAGAGGATTGATGATATCTGGTGTACATGCCCAGTTTGGATTAGTTGAGCTGGCAGTATAAATGAAAATTGAAAACAATTAAGGTTGAGATTGTAGCTGAAAGATGGGTTTTAGATTAAGCAGTAGGAGAGTATAGTTGTTATCGTCTGCACCTGTGGTTGTGTGCTGTAAGAGATAGTCGAGGTGGGTGCAAGTTGGGATAATCACCACCACAGTCTTAATTGAAAAACAAATAAAAAAACAGAAAGGTTCGAAATTGTAGCTGAAGATGGGTGTTTAGATAGGACTGCTTGGTATATTTTGTGTGTGGGGGTGGGGGGTGGGGGGGAATGCTTGATAGCTCATGATAATTTTGATGATGGGTTTCACACATTAATTCAAGTGAGTTTGACTTTGTGGAACTTCAAGGTTTCACACATTATTAATTCGTGAAAGAGACGAATAAGTTCTCTTGAATCTAACTTGTTGAGTTAATGGTTTGTGGCAAAGCTTCCTTCTTAGATTTTTTTGAGGAACAGTTAGTCTAGGAAGTGTTGTATTGAAGTAGTTTCTCGAAGTGGAAGTATTTGTGTCATGCTTTTGGCTTGACTTTCTTTTTTTGTATCATAATTAATTAAATTAGTTTTTAGGTGTTTGTTGTACATTCAATCAATTCAACTATAAGCACCTGCTGGATCTTTTCATCTAAGAATTGAAAGAATAAGCCCTTTGTTTTTCAACAAATTGTAGGAAGGTTCATTTTTGTCTTTTGCTACTACCTTTGTTGGTACAGTGGTCACTATGGAATTTTCTAATTGTATCAGTCCTTTATTGTACACTATTCTTAATGGTTTGTACCCACTTCTGGTGCATATGGAAAATGGATAGACTTTCTTTTTTGTTTGTACTGAAACTGAAAATTTAGCAATTTTACTTAAAAGTTGGTGGTAGTGTTTCTTGGGAGAAAGCATCAAGCAAATATCAACCTCTATGCAGGTATAATAGTTCAGCAATATATTTGATCTTCCCACTGGAATTGATATCATCCGGTCTTCTATGGGAGCAAATATGTTTCAGTTTTTAGTGGATATATTTTTTTTAAAAGAAATCTGCATTGGAAAAGAATGAGATTTGTCAATTAATTTTTTGATAAGGAGAAATAAGTATGCATACTTCATATTTACTCCATTTGTGACCCACTTTAGGGACATAAGTTTCAATCTAGCCAATTTTGTGTGTGATATTTAATCTCAGAATGTTGATTGCCAAAGTCACGTGAAGTTAATATGAGATAGAGAGTATGAAAGAGCTAGACATAAAGAACAAGAAGTTATTCGAGATCAAACTCAAGCATTCACGGCATTTTTAGACCTGAGGCAAAATTTTAAGGATTGTCGATAATTTCCTGAAGTTAACATTAAAGAAGTGTCACTTAAACAGCCATGCGCACTAGTATAACGTTTACACAGAGATCCTGTGTTCCAGTGTCATGTGGATAACGCGACTCATTTTGGTCTCGAGTTCTTCGGTCCCTGCTCTCTCTCCTTTTTTAGTTTCATGTTGTGCCCATTCTGTGATTCATCCTAGATCATTGTTTCTGTGCATAGTATTTGTATAGAAGATTATAATCGGTAGTGTGGCAACTTTTTAGTTCATACACATGTAATATTGCTGATTATCATCCTTCTAAGGATATATTTAGAAAATTTGAATCTCTTTAATTAATCCTTAACTATTGAGACATGCTAAAATGCTTGAGTAATTTTCTTGCATCAAAACTGCTAGCTAAGTTGCTCGGACTCTCCTAAAATGTTGTGGCACTTGTGTTGGATCCTTTAGAAATGCACCACTTTTGAGGGGTCTGACACACACCCGATGACATTTTTGAAGAGTCCGAGCAATGTAGACTGCAAGTGCCTACAAGCTGACTTTTTCAGGATAGATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTT-GGCTCTT</genome_strand>
        <mrna_strand>GAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAA-TCTTCAACA-CATTTCAAATATCCCATGCATTCTCTTGGGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E539603" ref_strand="+" ref_description="SGN-E539603 [TUS-59-H4]">
      <seq>ttatgaagaacttatatccggaactcacaaaacactgatcttgaaaggtgctgtcgaggaaggttcagaaaatctgctaagaacatcagggagctacctaagagaagacgtcgttccaccagagagtcctctgatcatctacaccggtggaaacgaaacagtagaagagtttgccaatgcattgaagcaagtgtgtagatgaggcacacaaaaatggtatacttatactcattccttatagaaggaattatataacatactatatacaacaaacctttttttctccttttctcttccatttttttgagcttttactttaaggaatgcaataatgtgtttctcaagcatttcttgattaccaatcccattctctcttatgttgtatgaacagagacgaattcataatttaaatttgatatattcaaccctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="7785" stop="6753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7485" g_stop="7047" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E539603" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7485" e_stop="7047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAGAACTTATATCCGGAACTCACAAAACACTGATCTTGAAAGGTGCTGTCGAGGAAGGTTCAGAAAATCTGCTAAGAACATCAGGGAGCTACCTAAGAGAAGACGTCGTTCCACCAGAGAGTCCTCTGATCATCTACACCGGTGGAAACGAAACAGTAGAAGAGTTTGCCAATGCATTGAAGCAAGTGTGTAGATGAGGCACACAAAAATGGTATACTTATACTCATTCCTTATAGAAGGAATTATATAACATACTATATACAACAAACCTTTTTTTCTCCTTTTCTCTTCCATTTTTTTGAGCTTTTACTTTAAGGAATGCAATAATGTGTTTCTCAAGCATTTCTTGATTACCAATCCCATTCTCTCTTATGTTGTATGAACAGAGACGAATTCATAATTTAAATTTGATATATTCAACCCTAAAAGTTCTT</genome_strand>
        <mrna_strand>TTATGAAGAACTTATATCCGGAACTCACAAAACACTGATCTTGAAAGGTGCTGTCGAGGAAGGTTCAGAAAATCTGCTAAGAACATCAGGGAGCTACCTAAGAGAAGACGTCGTTCCACCAGAGAGTCCTCTGATCATCTACACCGGTGGAAACGAAACAGTAGAAGAGTTTGCCAATGCATTGAAGCAAGTGTGTAGATGAGGCACACAAAAATGGTATACTTATACTCATTCCTTATAGAAGGAATTATATAACATACTATATACAACAAACCTTTTTTTCTCCTTTTCTCTTCCATTTTTTTGAGCTTTTACTTTAAGGAATGCAATAATGTGTTTCTCAAGCATTTCTTGATTACCAATCCCATTCTCTCTTATGTTGTATGAACAGAGACGAATTCATAATTTAAATTTGATATATTCAACCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E285111" ref_strand="+" ref_description="SGN-E285111 [cLER-20-G17]">
      <seq>tatgaagaacttatatccggaactcacaaaacactgatcttgaaaggtgctgtcgaggaaggttcagaaaatctgctaagaacatcagggagctacctaagagaagacgtcgttccaccagagagtcctctgatcatctacaccggtggaaacgaaacagtagaagagtttgccaatgcattgaagcaagtgtgtagatgaggcacacaaaaatggtatacttatactcattccttatagaaggaattatataacatactatatacaacaaacctttttttctccttttctcttccatttttttgagcttttactttaaggaatgcaataatgtgtttctcaagcatttcttgattaccaatcccattctctcttatgttgtatgaacagagacgaattcataatttaaatttgatatattcaaccctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="7784" stop="6753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7484" g_stop="7047" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E285111" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7484" e_stop="7047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAGAACTTATATCCGGAACTCACAAAACACTGATCTTGAAAGGTGCTGTCGAGGAAGGTTCAGAAAATCTGCTAAGAACATCAGGGAGCTACCTAAGAGAAGACGTCGTTCCACCAGAGAGTCCTCTGATCATCTACACCGGTGGAAACGAAACAGTAGAAGAGTTTGCCAATGCATTGAAGCAAGTGTGTAGATGAGGCACACAAAAATGGTATACTTATACTCATTCCTTATAGAAGGAATTATATAACATACTATATACAACAAACCTTTTTTTCTCCTTTTCTCTTCCATTTTTTTGAGCTTTTACTTTAAGGAATGCAATAATGTGTTTCTCAAGCATTTCTTGATTACCAATCCCATTCTCTCTTATGTTGTATGAACAGAGACGAATTCATAATTTAAATTTGATATATTCAACCCTAAAAGTTCTT</genome_strand>
        <mrna_strand>TATGAAGAACTTATATCCGGAACTCACAAAACACTGATCTTGAAAGGTGCTGTCGAGGAAGGTTCAGAAAATCTGCTAAGAACATCAGGGAGCTACCTAAGAGAAGACGTCGTTCCACCAGAGAGTCCTCTGATCATCTACACCGGTGGAAACGAAACAGTAGAAGAGTTTGCCAATGCATTGAAGCAAGTGTGTAGATGAGGCACACAAAAATGGTATACTTATACTCATTCCTTATAGAAGGAATTATATAACATACTATATACAACAAACCTTTTTTTCTCCTTTTCTCTTCCATTTTTTTGAGCTTTTACTTTAAGGAATGCAATAATGTGTTTCTCAAGCATTTCTTGATTACCAATCCCATTCTCTCTTATGTTGTATGAACAGAGACGAATTCATAATTTAAATTTGATATATTCAACCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E539600" ref_strand="-" ref_description="SGN-E539600 [TUS-59-H4]">
      <seq>ttatgaagaacttatatccggaactcacaaaacactgatcttgaaaggtgctgtcgaggaaggttcagaaaatctgctaagaacatcagggagctacctaagagaagacgtcgttccaccagagagtcctctgatcatctacaccggtggaaacgaaacagtagaagagtttgccaatgcattgaagcaagtgtgtagatgaggcacacaaaaatggtatacttatactcattccttatagaaggaattatataacatactatatacaacaaacctttttttctccttttctcttccatttttttgagcttttactttaaggaatgcaataatgtgtttctcaagcatttcttgattaccaatcccattctctcttatgttgtatgaacagagacgaattcataatttaaatttgatatattcaaccctaaaaaaaaaaaaaaaaaactcgaggggggcccgtacccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="7785" stop="6753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7485" g_stop="7053" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="448"/>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E539600" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539600" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7485" e_stop="7053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAGAACTTATATCCGGAACTCACAAAACACTGATCTTGAAAGGTGCTGTCGAGGAAGGTTCAGAAAATCTGCTAAGAACATCAGGGAGCTACCTAAGAGAAGACGTCGTTCCACCAGAGAGTCCTCTGATCATCTACACCGGTGGAAACGAAACAGTAGAAGAGTTTGCCAATGCATTGAAGCAAGTGTGTAGATGAGGCACACAAAAATGGTATACTTATACTCATTCCTTATAGAAGGAATTATATAACATACTATATACAACAAACCTTTTTTTCTCCTTTTCTCTTCCATTTTTTTGAGCTTTTACTTTAAGGAATGCAATAATGTGTTTCTCAAGCATTTCTTGATTACCAATCCCATTCTCTCTTATGTTGTATGAACAGAGACGAATTCATAATTTAAATTTGATATATTCAACCCTAAAA</genome_strand>
        <mrna_strand>TTATGAAGAACTTATATCCGGAACTCACAAAACACTGATCTTGAAAGGTGCTGTCGAGGAAGGTTCAGAAAATCTGCTAAGAACATCAGGGAGCTACCTAAGAGAAGACGTCGTTCCACCAGAGAGTCCTCTGATCATCTACACCGGTGGAAACGAAACAGTAGAAGAGTTTGCCAATGCATTGAAGCAAGTGTGTAGATGAGGCACACAAAAATGGTATACTTATACTCATTCCTTATAGAAGGAATTATATAACATACTATATACAACAAACCTTTTTTTCTCCTTTTCTCTTCCATTTTTTTGAGCTTTTACTTTAAGGAATGCAATAATGTGTTTCTCAAGCATTTCTTGATTACCAATCCCATTCTCTCTTATGTTGTATGAACAGAGACGAATTCATAATTTAAATTTGATATATTCAACCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E550554" ref_strand="-" ref_description="SGN-E550554 [TUS-6-A8]">
      <seq>acaagaaggtaaagaggagaaatctgtaacttgtgctattgaggaagatgtgaaatcaagcaattcccattgcatttcctacttgatcaaggatcgcagtaaggcaaagaaggtagatgatatgagacagaagcttaggatgaggggtctgcgctgccatttgatgtattgcaggaattcaacaagaatgcaagttgttcctctgcttgcgtctcggtcacaggcactcaggtatctatttgtacgctggagattgaacgttgcaaacatgtgtgtcatcctcggtgaaactggagacacggattatgaagaacttatatccggaactcacaaaacactgatcttgaaaggtgctgtcgaggaaggttcagaaaatctgctaagaacatcagggagctacctaagagaagacgtcgttccaccagagagtcctctgatcatctacaccggtggaaacgaaacagtagaagagtttgccaatgcattgaagcaagtgtgtagatgaggcacacaaaaatggtatacttatactcattccttatagaaggaattatataacatactatatacaacaaacctttttttctccttttctcttccatttttttgagcttttactttaaggaatgcaataatgtgtttctcaagcatttctggattaccaatcccattctctcttatgttgatgaacagagacgaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="9172" stop="6784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8872" g_stop="8770" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8769" i_stop="8675" i_length="95">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8674" g_stop="8547" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="231" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8546" i_stop="7558" i_length="989">
            <donor d_prob="0.657" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7557" g_stop="7084" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="704" r_length="473" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E550554" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550554" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8872" e_stop="8770"/>
          <exon e_start="8674" e_stop="8547"/>
          <exon e_start="7557" e_stop="7084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGGTAAAGAGGAGAAATCTGTAACTTGTGCTATTGAGGAAGATGTGAAATCAAGCAATTCCCATTGCATTTCCTACTTGATCAAGGATCGCAGTAAGGTAGATATTTTTTTCTCTGAATCGAGAAATTCAACCAGTATAGCAAACAGTTTAATGTATTTCAAGTAACACATATATGTTTAATCTCTCATCAGGCAAAGAAGGTAGATGATATGAGACAGAAGCTTAGGATGAGGGGTCTGCGCTGCCATTTGATGTATTGCAGGAATTCAACAAGAATGCAAGTTGTTCCTCTGCTTGCGTCTCGGTCACAGGCACTCAGGTACTGTTCCAGATAGATGAACTAGTAGCCAACCTGAAAATTATTCCACATATTGTTGTCATGTCCTTGGTCTGGATTAATAACCTCATCGATTTGTTTTGCAATATCCTCATTTATGCCAATGCCAATCTTAAGTTGTTCACGAGAAGCTTCCATCTTTTTGTTGATGATAGCCAGCTTGAAATTAAAGGCCTAAGTCAGTAGGAAAAGCATGTTAATATGTTGGGGTACCTTATTTCTTACTCACCATTTTTAATCTCTGGGTGCCAATCGGTAGCCTGCCCATTTCATATGATATCATTGCAGTCGATCTTGTACTAAAGGTGTTCACTGCATATTTTTGGCATGTAGGCCAGATTTTCAGTTTAACATGCCCATTTTGCTAAAGTTGGGATGTCAAAGCATTGTAAAAGAGAAAAGCGACGGTGGGGCTTTAGTTGCTTATTCATTTAGGCGTTTGTTTTCACTTTCCGCAAAAAAGAATCAGTTTCTGAGAAGTAGCTAGTTTGATTTAGTTTTTTAGCAAAGACATGCAAATTTTTCTGGATCCTTGTGTTCATGTTCATCACTAACAAAGGGAGGTAGGTTAAGAAGACGGTAGCTTTAATAGGACATTAATCCACGAGTCGAAGCACTATAGTCTATAGATGACTCAAAAGAGTAAAAAGTATCCTTTTTATTCCAGTTATACTAACAAGAAACTCTGGTATTTAGGGCATGTAAACTGTTGCTGGTGAGTCCAAACCTTATCTCATCTTGAAAACGTCCGTTATACAAATATTTAATTACGAATACAGCTTTAAACAGGTAAGGATTATACAACAAAAGATCTGTGCTGCACGAAAACTGGTCATTATTTGATTGTATGAAATGTTCATTAGCTAAAGAATCCGTCATTACATATAGGAACATTTGTTGGAATATCAGGATTTCCGAGTACTTCCCTTGCTCATAGCTAGCATGCTTTTGATACCATCTCATTTTTGCAGGTATCTATTTGTACGCTGGAGATTGAACGTTGCAAACATGTGTGTCATCCTCGGTGAAACTGGAGACACGGATTATGAAGAACTTATATCCGGAACTCACAAAACACTGATCTTGAAAGGTGCTGTCGAGGAAGGTTCAGAAAATCTGCTAAGAACATCAGGGAGCTACCTAAGAGAAGACGTCGTTCCACCAGAGAGTCCTCTGATCATCTACACCGGTGGAAACGAAACAGTAGAAGAGTTTGCCAATGCATTGAAGCAAGTGTGTAGATGAGGCACACAAAAATGGTATACTTATACTCATTCCTTATAGAAGGAATTATATAACATACTATATACAACAAACCTTTTTTTCTCCTTTTCTCTTCCATTTTTTTGAGCTTTTACTTTAAGGAATGCAATAATGTGTTTCTCAAGCATTTCTTGATTACCAATCCCATTCTCTCTTATGTTGTATGAACAGAGACGAATTCA</genome_strand>
        <mrna_strand>ACAAGAAGGTAAAGAGGAGAAATCTGTAACTTGTGCTATTGAGGAAGATGTGAAATCAAGCAATTCCCATTGCATTTCCTACTTGATCAAGGATCGCAGTAAG...............................................................................................GCAAAGAAGGTAGATGATATGAGACAGAAGCTTAGGATGAGGGGTCTGCGCTGCCATTTGATGTATTGCAGGAATTCAACAAGAATGCAAGTTGTTCCTCTGCTTGCGTCTCGGTCACAGGCACTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTATTTGTACGCTGGAGATTGAACGTTGCAAACATGTGTGTCATCCTCGGTGAAACTGGAGACACGGATTATGAAGAACTTATATCCGGAACTCACAAAACACTGATCTTGAAAGGTGCTGTCGAGGAAGGTTCAGAAAATCTGCTAAGAACATCAGGGAGCTACCTAAGAGAAGACGTCGTTCCACCAGAGAGTCCTCTGATCATCTACACCGGTGGAAACGAAACAGTAGAAGAGTTTGCCAATGCATTGAAGCAAGTGTGTAGATGAGGCACACAAAAATGGTATACTTATACTCATTCCTTATAGAAGGAATTATATAACATACTATATACAACAAACCTTTTTTTCTCCTTTTCTCTTCCATTTTTTTGAGCTTTTACTTTAAGGAATGCAATAATGTGTTTCTCAAGCATTTCTGGATTACCAATCCCATTCTCTCTTATGTTG-ATGAACAGAGACGAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E739583" ref_strand="+" ref_description="SGN-E739583 [LC18AB05]">
      <seq>ctttatattaatgaatttcattcttttggaaaagccatacattctttgatgtaaagattgaatcttttctatctctgattgaaccccattgttttattttacatttttttgaagtgggtaagttacaaatagcaaaaaaaaatggctggtaatgaatggataaatggttatttaaaagctatattgagcagtggatcttcagctattgaatataaaaaaccatcatcaacaacaacatcatcacatttgaatttagcaaaaagggctaattttaatccaacaaaatattttgtctaagaagttgttacaggggttgatgaaactgatcttcatataacatggataaaatttgtagctacaaggaatacaagggagagaagtttaagattggagaatatgtgttggcgcatttggcatcttgctcacaagaaaaaacagttggaatgggaagacctccagaggtctgcaaccagaatattggaacgagaactaggacgcaaagatgttacagaggatatgtcagaagatttatctgaaggggaaaagggtgatgttttagggaagacaccaacacttgacagcccgaggaaaaggtttcaaaggaacttttccaatttggaagtgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="15572" stop="12622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15308" g_stop="14871" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14870" i_stop="13112" i_length="1759">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.957" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13111" g_stop="12922" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="628" r_length="190" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E739583" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15308" e_stop="14871"/>
          <exon e_start="13111" e_stop="12922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTTCAAGAATTTCATTTTTTTGGAAAAAAAATCCAGTCTTTGATGTAAAGATTGAATCTTTTCAATCTCTGAGTGAACCCCATTGTTTTATTTTTCATTTTTTTGAGGTGGGTAAGTTAGAAATAGCAAAAAAAAATGGCTGGTAATGAATGGATAAATGGTTATTTAGAAGCTATATTGAGCAGTGGAGCTTCAGCTATTGAAGATAAAAAACCATCATCAACAACAACATCATCACATTTGAATTTAGCAGAAAGGGCTAATTTTAATCCAACAAAATATTTTGTCGAAGAAGTTGTTACAGGGGTTGATGAAACTGATCTTCATAGAACATGGATAAAAGTTGTAGCTACAAGGAATACAAGGGAGAGAAGTTCAAGATTGGAGAATATGTGTTGGCGCATTTGGCATCTTGCTCGCAAGAAGAAACAGGTTTGCACGCATCTCAATTAATTTTATTTATTATGTGTCATTCGTATTGGTTAACTGTTTTTATCGAGGCTTGAATAGATATAGAAGAAATGATTATATGGTGTTTTATTGTTTGTGTTGGGAATTGAACCTTAGTGCTTTATGTTTTAGTGATTTTTTTTTTATAATCATGATGTCTTGGTTAGTTTATGCTCGTCTCGATTTATTTCACGTGCATTTGTAACCTCCCATTACCTCCCATTGGTACAGGTAACTCTGTCGTTCGAGGCTGAGATAGATAATTCGAAATTATTTAGTGTTTTTGTCTTCGCGGGAAATTGAACCTTGAGTGCTCTATGTTTTAGTGATACTTTTTCCATGCAAAAGATGTAGTGAAATACTCTCCCCTCCCATTTTATGTGGTGGTGTTTCTTTTCGGGGAGTCGAATAGCTTTTTCAAAATATTTTGAATTCGTTTCGTTGTTAAATATGTAAATTTTATTTTAGAATATTTTCAAGAAGCTATACAAGTATTCATAGTCAGAATTAAGTGTTTTGACCCTAGTATATTGAACTTTCACATAAGTTAGGACAGAGGGAGTAGTGCGTTTATATAGTTTTGAGATTTTCGATGAATGTGGACTGTGGAGAAGTTTACTCTGGGATTTCTTTGTTGTTATTTGTGTTTTATAGCTCTGCTCATTTCTTGAATTAGGTGAATGTCAAAATGGTTTTGACTTTTGATTATGTTCCATGCTCTTTTTGTGTGTTTGTGACTTGTTTAGGGTTGTGGAATAAAGTGGCATTGGTAAAGTTTTTGTCTTTGTGTGTTGTGCCTTGTGTTTTCTGGAACTTCTCAAGCATGATATTTGTATATTCCTTTGTTATGTTGCTCGATCTCTTCAAAAATGTCGGCGAGTGCGTGTCGGATCCTTCAAAAGTAGTACATTTTGAAGGACCCGACACGGATGTGGCATCATTTTTGGAGAGTATAAGCAACATAGTTCCGTTGTCCATTTGTTTTTTCCATATGTTTTTTTAATGGTGGTGTTCGGACCAGCTCTCATGCTCTTTGACTTATCCAGTAGGTAGATCCTCGCCTCCTCCCACTAGCATAAAGCACAAGTATCGAGTAACTCTACCGATCCAATCAAAGCTTTTTAGGCGGATGAGAAGGAATACTCATTGTTTTTCTTTTGGGTCTCAGCCGGGATTTGTAACTGTACTTTTTGTGTTCTTATGGAAGGAAAATGTGATCTTCTGGGGTTCATGAAATCTTTTCCTACATGTTATGTATGTATCTGCAAAATGTAGCTTATAAGATTGTTATTTTAGTACATTTGCAGATATAGGAATAATCATTCAATTAGTAGTGAGTGTAATTAAAATAGATGAAATTTGATAAATTTTTCAAATATAAGGAAATAGGAAGTGTGCGAGATCTTTTTGACTTGTAGAGATACATCCAAACCACCTTCGCCCGGATAGCTCACTGTATATACAAGGGCAATTTTTTCTTTACTATATACTCTTGGTAATAATCCTGCTTCCATCACGGGAGATACATGTATGTGTGAAGATTCTGTGGTTATTTACTAATTCAGGAAGAGATTTGATCATTTATAGTTTTAGGTTGTGTTAAATCTAAGCCCTCGATTGTTAGTTGCTGAAAGTTAGTCATTGTTGGATTAAATGCTGTCAATTATTCTTTTGCAATTTAAGTAACCTTACGTCATTATGTCGGAATTGTTTTTTCTGATACATTCCACTCTTTTCATAGTTGGAATGGGAAGACCTCCAGAGGTCTGCAAACAGAAGATTGGAACGAGAACTAGGACGCAAAGATGTTACAGAGGATATGTCAGAAGATTTATCTGAAGGGGAAAAGGGTGATGTTTTAGGGGAGACACCAACACTTGACAGCCCGAGGAAAAGGTTTCAGAGGAACTTTTCCAATTTGGAAGTGTGGT</genome_strand>
        <mrna_strand>CTTTATATTAATGAATTTCATTCTTTTGGAAAAGCCATACATTCTTTGATGTAAAGATTGAATCTTTTCTATCTCTGATTGAACCCCATTGTTTTATTTTACATTTTTTTGAAGTGGGTAAGTTACAAATAGCAAAAAAAAATGGCTGGTAATGAATGGATAAATGGTTATTTAAAAGCTATATTGAGCAGTGGATCTTCAGCTATTGAATATAAAAAACCATCATCAACAACAACATCATCACATTTGAATTTAGCAAAAAGGGCTAATTTTAATCCAACAAAATATTTTGTCTAAGAAGTTGTTACAGGGGTTGATGAAACTGATCTTCATATAACATGGATAAAATTTGTAGCTACAAGGAATACAAGGGAGAGAAGTTTAAGATTGGAGAATATGTGTTGGCGCATTTGGCATCTTGCTCACAAGAAAAAACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAATGGGAAGACCTCCAGAGGTCTGCAACCAGAATATTGGAACGAGAACTAGGACGCAAAGATGTTACAGAGGATATGTCAGAAGATTTATCTGAAGGGGAAAAGGGTGATGTTTTAGGGAAGACACCAACACTTGACAGCCCGAGGAAAAGGTTTCAAAGGAACTTTTCCAATTTGGAAGTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E324223" ref_strand="+" ref_description="SGN-E324223 [cTOC-4-E13]">
      <seq>ttgaagatgaaaataaaatacgtgcagattaggccagtggttctgatatcacatatgcactagaagacttgaaaatcggagttgaggggaatctggcagagcttcatccaagtcgtagagttcagcttagtttaggtgaacctggggtttcccttttctgttacagagctgtgcttcttgatgcccaaaggaactttggaccttttgcatatcaatgtgctgtttttcttgtgccaaagactcgagctcatgagtggctgttctcttcagaagaaggacaatgggcagttgtagaaagctctaaagctgctcgtttaataatgattttgctggattctagccattcagacgccagtatggatgacattcagaaagatctctctcctctgataatgcaattggcgccaggagattttgacgatgaaactcagataccttttatggccgcaagtgatggaatcaaacagcgaaagattgttcaagagatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="25403" stop="27905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25703" g_stop="25941" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25942" i_stop="26618" i_length="677">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26619" g_stop="26702" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="323" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26703" i_stop="26781" i_length="79">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26782" g_stop="26829" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="371" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26830" i_stop="26925" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26926" g_stop="26990" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="436" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26991" i_stop="27552" i_length="562">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27553" g_stop="27601" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="485" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27602" i_stop="27848" i_length="247">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27849" g_stop="27854" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="491" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E324223" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25703" e_stop="25941"/>
          <exon e_start="26619" e_stop="26702"/>
          <exon e_start="26782" e_stop="26829"/>
          <exon e_start="26926" e_stop="26990"/>
          <exon e_start="27553" e_stop="27601"/>
          <exon e_start="27849" e_stop="27854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGATGAAAATAAAATACGTGCAGATTATTCCAGTGGTTCTGATATCACATATGCACTAGAAGACTTGAAAATCGGAGTTGAGGGGAATCTGGCAGAGCTTCATCCAAGTCGTAGAGTTCAGCTTAGTTTAGGTGAACCTGGGGTTTCCCTTTTCTGTTACAGAGCTGTGCTTCTTGATGCCCAAAGGAACTTTGGACCTTTTGCATATCAATGTGCTGTTTTTCTTGTGCCAAAGGTTTGTTTCCTCCGCTTTCACCCAGTTGCTTGTTAAATCATTATATTTTAGAAGTGTTTAAGCTGACCCCCTCTTTTGGAGTTCCCTTTTTCTTCTGGTAGCTGGTGTGTTGTCTAGGAAGAAAAGATCAAGACTCCCTTTAGTTTCAACATCAATAACCTTATTTGACATGGTTGAACTTTTAAATGAGTCAGCATTGGTACTATGAACACTCTTTGAGAAAGAGATGGAATAGATATTACTCTTTAGATTTTTGTCTAGTTAATTTTCTGACAAGTACAACATTGAGAACATCTCTGTAGAGGGATGATAATATTCCGCTTCGGGAAGATGACATAATTTTGTGTTGTATTATAATATTCCCAGTTTGGCCTATGAGTTTGTATGTAATAATTTGTATTTCAGTAAGTATATTATTGCCCTATTTTTGTCTATTCATGAACAGTTTCATGTTGGAGGTAATTTTCATTTCTTGCTAGTCATGTCCTTGTGGTTTGCCCAACATAGTTGTTTGCGCTGCCAATAGTGTGGGAAAGTCATGTTAAATGGAAATGAAAAAGAAAATTGGGACCGTCGACCTAATTTGATGTTATGTTTTGTGACTCTATGTCCTTACATGATAGTTCATTAGTCTTTTTTTGAGATGGATAAGAATTTAACTGATATTTGGATTTCAGACTCGAGCTCATGAGTGGCTGTTCTCTTCAGAAGAAGGACAATGGGCAGTTGTAGAAAGCTCTAAGGCTGCTCGTTTAATAATGGTACTCATTCATTAAAATGCACTTGTTTTATTATTTTATTATCTTTGTAAAACTCTGATGGAGTGGCTTGTGTTCTTAGATTTTGCTGGATTCTAGCCATTCAGACGCCAGTATGGATGACATTCAGGTGACTTTTGCTAGATTTTGTTGATATATTGTGTTGTGTCATCAGTTGATGAAAATAGTTCCCATCACCTTAGTTGCATTTTCTTTTTAAATCCAGAAAGATCTCTCTCCTCTGATAATGCAATTGGCGCCAGGAGATTTTGACGATGAAGCTCAGATACCGTAAGTTTACTTCTCATAATTTACCTTTAGCTTTAGCCATCTACCTTAATTGATATAGCATAGGTTATCAATTTTAAGGTAAATTCTTGAATTTAACTTGTGGATAGCTCCTTTATTATCCATTACCGAAATATGGCTACCCAAATATAAGAGCCGAATGGGTAGAAAGTGGTCTAATGTCTGATCGATCAATTCAACTAGTTCCTAGTGTAGTTTGCACTCCCAAAACTCTTAATATATAGTCAGTTCTTTCAAGCTGTAAATGTACGTCTTTAGTGTCTCCATTGTAATGTCCAACACTGTTTTTAGATCCCTTTTTTTAAAAAAAATAAATGGTGGTCAATGGGTCAGCTGGAGCGCTCCCTCGGTTATTTTCACTGAGTACCAGTTACCCCCAGCAGCACTGTTATCAAGTAATATCCAACGCTGTTTTAGTGCTTCTCAAATGGTCTGAATAATAACTTTGCCTACATAGCTATTAAGTTAACTACTCATATAGCAACAAATATGTGTTTCTAATATTGGGAAGTTTAGTTACAGTAAGTTTTTGTACTTTTCTCAGTTTTATGGCCGCAAGTGATGGAATCAAACAGCGAAAGATTGTTCAAGAGGTCAGTGAAAATTCTTTAAATCAATCATCAATACTTAATAGCATTCCTATGATTGTTCGTATTGCCCACCCATTTCTTTATCTGTCATTTTACTCTCTTTTTCTTGGGAATAGGTTTAATAGCTATGATTTTGAATTTATCTTAATTGGTGCATAATATATTATATTGTTTAAATGGTTTTGCCTTTATAAAAAAGCATTTCACCGTAATTTCTAACCTATTTTACATCTTCCATTGTCTTTTCTAGATCACA</genome_strand>
        <mrna_strand>TTGAAGATGAAAATAAAATACGTGCAGATTAGGCCAGTGGTTCTGATATCACATATGCACTAGAAGACTTGAAAATCGGAGTTGAGGGGAATCTGGCAGAGCTTCATCCAAGTCGTAGAGTTCAGCTTAGTTTAGGTGAACCTGGGGTTTCCCTTTTCTGTTACAGAGCTGTGCTTCTTGATGCCCAAAGGAACTTTGGACCTTTTGCATATCAATGTGCTGTTTTTCTTGTGCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAGCTCATGAGTGGCTGTTCTCTTCAGAAGAAGGACAATGGGCAGTTGTAGAAAGCTCTAAAGCTGCTCGTTTAATAATG...............................................................................ATTTTGCTGGATTCTAGCCATTCAGACGCCAGTATGGATGACATTCAG................................................................................................AAAGATCTCTCTCCTCTGATAATGCAATTGGCGCCAGGAGATTTTGACGATGAAACTCAGATACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGGCCGCAAGTGATGGAATCAAACAGCGAAAGATTGTTCAAGAG.......................................................................................................................................................................................................................................................ATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E709521" ref_strand="+" ref_description="SGN-E709521 [FA52BB11]">
      <seq>cttcagaagaaggacaatgggcagttgtagaaagctctaaggctgctcgtttaataatgattttgctggattctagccattcagacgccagtatggatgacattcagaaagatctctctcctctgataatgcaattggcgccaggagattttgacgatgaagctcagataccttttatggccgcaagtgatggaatcaaacagcgaaagattgttcaagagatcacatctcccttgactggtccaataattgtagatgatgtgatctatgagaaagttgatgaaaatattagccgtctctttgcatctgaggatgtgatatttcgtcgccttactttccaaagaacggagagtttagtgcaatctgaggctgtgctatcaaaagaaggatcaccgaagtctctagctgatattaatcagaagataggccagtcatcttcaaaatccaagaaaaaaggaaatcagaaaaaatctgggtctaatgtctcatcgtctgatggattgagcaaagatttgaaagttgaccacagttatttggccagttcatatcatactggaatcatctctggttttacattgatatcttctcatttggatggtttggcatctacgggaggcatggtgagatcagtagtaattggtcttggagcaggattgcttcccatgtttctacgtaagcacctgagttttgcagagattgaggttttggagttggatcctgtggttgtagatcttgctagagactattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="26344" stop="29478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26644" g_stop="26702" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26703" i_stop="26781" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26782" g_stop="26829" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="107" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26830" i_stop="26925" i_length="96">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26926" g_stop="26990" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="172" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26991" i_stop="27552" i_length="562">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27553" g_stop="27601" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="221" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27602" i_stop="27848" i_length="247">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.860" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27849" g_stop="28125" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="498" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28126" i_stop="28319" i_length="194">
            <donor d_prob="0.279" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28320" g_stop="28441" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="620" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28442" i_stop="28967" i_length="526">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28968" g_stop="29048" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="701" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29049" i_stop="29129" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29130" g_stop="29178" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="750" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E709521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26644" e_stop="26702"/>
          <exon e_start="26782" e_stop="26829"/>
          <exon e_start="26926" e_stop="26990"/>
          <exon e_start="27553" e_stop="27601"/>
          <exon e_start="27849" e_stop="28125"/>
          <exon e_start="28320" e_stop="28441"/>
          <exon e_start="28968" e_stop="29048"/>
          <exon e_start="29130" e_stop="29178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGAAGAAGGACAATGGGCAGTTGTAGAAAGCTCTAAGGCTGCTCGTTTAATAATGGTACTCATTCATTAAAATGCACTTGTTTTATTATTTTATTATCTTTGTAAAACTCTGATGGAGTGGCTTGTGTTCTTAGATTTTGCTGGATTCTAGCCATTCAGACGCCAGTATGGATGACATTCAGGTGACTTTTGCTAGATTTTGTTGATATATTGTGTTGTGTCATCAGTTGATGAAAATAGTTCCCATCACCTTAGTTGCATTTTCTTTTTAAATCCAGAAAGATCTCTCTCCTCTGATAATGCAATTGGCGCCAGGAGATTTTGACGATGAAGCTCAGATACCGTAAGTTTACTTCTCATAATTTACCTTTAGCTTTAGCCATCTACCTTAATTGATATAGCATAGGTTATCAATTTTAAGGTAAATTCTTGAATTTAACTTGTGGATAGCTCCTTTATTATCCATTACCGAAATATGGCTACCCAAATATAAGAGCCGAATGGGTAGAAAGTGGTCTAATGTCTGATCGATCAATTCAACTAGTTCCTAGTGTAGTTTGCACTCCCAAAACTCTTAATATATAGTCAGTTCTTTCAAGCTGTAAATGTACGTCTTTAGTGTCTCCATTGTAATGTCCAACACTGTTTTTAGATCCCTTTTTTTAAAAAAAATAAATGGTGGTCAATGGGTCAGCTGGAGCGCTCCCTCGGTTATTTTCACTGAGTACCAGTTACCCCCAGCAGCACTGTTATCAAGTAATATCCAACGCTGTTTTAGTGCTTCTCAAATGGTCTGAATAATAACTTTGCCTACATAGCTATTAAGTTAACTACTCATATAGCAACAAATATGTGTTTCTAATATTGGGAAGTTTAGTTACAGTAAGTTTTTGTACTTTTCTCAGTTTTATGGCCGCAAGTGATGGAATCAAACAGCGAAAGATTGTTCAAGAGGTCAGTGAAAATTCTTTAAATCAATCATCAATACTTAATAGCATTCCTATGATTGTTCGTATTGCCCACCCATTTCTTTATCTGTCATTTTACTCTCTTTTTCTTGGGAATAGGTTTAATAGCTATGATTTTGAATTTATCTTAATTGGTGCATAATATATTATATTGTTTAAATGGTTTTGCCTTTATAAAAAAGCATTTCACCGTAATTTCTAACCTATTTTACATCTTCCATTGTCTTTTCTAGATCACATCTCCCTTGACTGGTCCAATAATTGTAGATGATGTGATCTATGAGAAAGTTGATGAAAATATTAGCCGTCTCTTTGCATCTGAGGATGTGATATTTCGTCGCCTTACTTTCCAAAGAACGGAGAGTTTAGTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAGAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATGGTAGCTTTACGATCCTTCATACTCTTACGCCCTCTTTTTTCATCAAACCTTGCCCTAATTCTAATTTATATGATATGTTTCGAATAGTGGAAAGGAGAACTGAAGCCATTTGAATGTACTTATGAGATTTATGTGAAGGCATCAATTCTAACTTTGAGTCAGTACAATGTGCAATTAAATTAATTCTTTTGCAGGATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTCTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATGGTAAGAAGTTAACTTGTATCTTTTTTTCTAAAAAGAAGACTTGCATATATGAATTTTTGTCATTTATATTAACCGAAACATCTCTTAACACATTGTGTAAAAACAACTCGACAGATCATTAGGTTAAGCAACACTCTTATCATACTAGAGTACAGAACACTAGTTAGTTGGTTGCTGATGAAACGTAACATAAACAACATTTGAAGTCAGAACCACGCTAACCTAAATGTCCACTGAGCAAATTTATTGTGCTAAGACTGCACATCCTGCCGTTTTCCATTGCCATTATTGCATAGCAAAGTTAGTATAAAGAACAATAAGTACTGTAATAGAGTTCTAAAATCTGTCCTTTACGCACAAAAATGCATAGTCATCCACCCACCCACATATTTATCCATATTGAGAAGAATACAACATCTATGAACTAGAATATAGCTTCTGTAATTTTATACCATGTGAAGTTCTAGCTCATCTTGGGAAGTACATGTGATGCTTTAGCTAAAGCTGCAGTTGTTGCTTTTTTCAGGTGAGATCAGTAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTTCTACGTAAGCACCTGAGTTTTGCAGAGATTGAGGTAAGTTATGGCTACCTAAATGTGCCACCTTTAAATTATTATTTCTTACCTTGCCAAACTGGCTCATAATGATATTCACAGGTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTG</genome_strand>
        <mrna_strand>CTTCAGAAGAAGGACAATGGGCAGTTGTAGAAAGCTCTAAGGCTGCTCGTTTAATAATG...............................................................................ATTTTGCTGGATTCTAGCCATTCAGACGCCAGTATGGATGACATTCAG................................................................................................AAAGATCTCTCTCCTCTGATAATGCAATTGGCGCCAGGAGATTTTGACGATGAAGCTCAGATACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATGGCCGCAAGTGATGGAATCAAACAGCGAAAGATTGTTCAAGAG.......................................................................................................................................................................................................................................................ATCACATCTCCCTTGACTGGTCCAATAATTGTAGATGATGTGATCTATGAGAAAGTTGATGAAAATATTAGCCGTCTCTTTGCATCTGAGGATGTGATATTTCGTCGCCTTACTTTCCAAAGAACGGAGAGTTTAGTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAGAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATG..................................................................................................................................................................................................GATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTCTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATCAGTAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTTCTACGTAAGCACCTGAGTTTTGCAGAGATTGAG.................................................................................GTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E326935" ref_strand="+" ref_description="SGN-E326935 [cTOC-18-J9]">
      <seq>tctctttgcatctgaggatgtgatatttcgtcgccttactttccaaagaacggagagtttagtgcaatctgaggctgtgctatcaaaagaaggatcaccgaagtctctagctgatattaatcagaagataggccagtcatcttcaaaatccaagaaaaaaggaaatcagaaaaaatctgggtctaatgtctcatcgtctgatggattgagcaaagatttgaaagttgaccacagttatttggccagttcatatcatactggaatcatctctggttttacattgatatcttctcatttggatggtttggcatctacgggaggcatggtgagatcagtagtaattggtcttggagcaggattgcttcccatgtttctacgtaagcacctgagttttgcagagattgaggttttggagttggatcctgtggttgtagatcttgctagagactattttgattttagagatgatgaacggttaaaggtacatgtgactgatggtttgaagtacgtcaaggatgcagctcatgcagttaccaatggttatgaaaatgatgtttctgaggcaaaggtccttctttcaatggggtattcaccctgtctaatgcaccacttaaaagcacagaaaaaattgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="27623" stop="30172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27923" g_stop="28125" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28126" i_stop="28319" i_length="194">
            <donor d_prob="0.279" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28320" g_stop="28441" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="325" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28442" i_stop="28967" i_length="526">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28968" g_stop="29048" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="406" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29049" i_stop="29129" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29130" g_stop="29204" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="481" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29205" i_stop="29716" i_length="512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29717" g_stop="29872" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="636" r_length="155" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E326935" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27923" e_stop="28125"/>
          <exon e_start="28320" e_stop="28441"/>
          <exon e_start="28968" e_stop="29048"/>
          <exon e_start="29130" e_stop="29204"/>
          <exon e_start="29717" e_stop="29872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTGCATCTGAGGATGTGATATTTCGTCGCCTTACTTTCCAAAGAACGGAGAGTTTAGTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAGAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATGGTAGCTTTACGATCCTTCATACTCTTACGCCCTCTTTTTTCATCAAACCTTGCCCTAATTCTAATTTATATGATATGTTTCGAATAGTGGAAAGGAGAACTGAAGCCATTTGAATGTACTTATGAGATTTATGTGAAGGCATCAATTCTAACTTTGAGTCAGTACAATGTGCAATTAAATTAATTCTTTTGCAGGATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTCTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATGGTAAGAAGTTAACTTGTATCTTTTTTTCTAAAAAGAAGACTTGCATATATGAATTTTTGTCATTTATATTAACCGAAACATCTCTTAACACATTGTGTAAAAACAACTCGACAGATCATTAGGTTAAGCAACACTCTTATCATACTAGAGTACAGAACACTAGTTAGTTGGTTGCTGATGAAACGTAACATAAACAACATTTGAAGTCAGAACCACGCTAACCTAAATGTCCACTGAGCAAATTTATTGTGCTAAGACTGCACATCCTGCCGTTTTCCATTGCCATTATTGCATAGCAAAGTTAGTATAAAGAACAATAAGTACTGTAATAGAGTTCTAAAATCTGTCCTTTACGCACAAAAATGCATAGTCATCCACCCACCCACATATTTATCCATATTGAGAAGAATACAACATCTATGAACTAGAATATAGCTTCTGTAATTTTATACCATGTGAAGTTCTAGCTCATCTTGGGAAGTACATGTGATGCTTTAGCTAAAGCTGCAGTTGTTGCTTTTTTCAGGTGAGATCAGTAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTTCTACGTAAGCACCTGAGTTTTGCAGAGATTGAGGTAAGTTATGGCTACCTAAATGTGCCACCTTTAAATTATTATTTCTTACCTTGCCAAACTGGCTCATAATGATATTCACAGGTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGATTTTAGAGATGATGAACGGTTAAAGGTAATTTGCAGTCTTCCCTCCACCTCTTACTTCTGTTCCCTCTCTCTTGCTTATTCCTCATTAATAAGTTAATAACTAAATGCAAGTGTAGGCAGTATCAACAACATACCCAGTGTGATCCTATAAGTGGGGTCTGCGGAGGGTGGGGTGCATGCAGACCTTAATCCCTATAAGAGGGATCTGGGTTTACAGACTATTTCCAATAGACCCTCGGCTCAAAGCGTAAACCTTATTGAAAAAAAGAAAAGAAAACTAAAGGCGATGCAAGATACAACATCCATTCAAGATCACCCAAGATTTTCAATCTATGTTTGACTATATTCTTGGTGGCAATTTTCTTATGAATTAAAATTCCAAGGTGAATAAAATGAAAAATGTGTTTTAAAAAAACCATATGTTACATTGGGTCACCCGTATCTCTTATTAAAACAATATAAGAAGTGTAACTCAGAAATCAGATGCTTGTGAAACCTTATAACTGTCGTCTTCTATTAATGTTTTTGGTGTTTCAGGTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATG</genome_strand>
        <mrna_strand>TCTCTTTGCATCTGAGGATGTGATATTTCGTCGCCTTACTTTCCAAAGAACGGAGAGTTTAGTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAGAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATG..................................................................................................................................................................................................GATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTCTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATCAGTAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTTCTACGTAAGCACCTGAGTTTTGCAGAGATTGAG.................................................................................GTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGATTTTAGAGATGATGAACGGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGT-CCTTCTTTCAATGGGGTATTCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E540448" ref_strand="+" ref_description="SGN-E540448 [TUS-60-L16]">
      <seq>ccccgggctgcaggtttcgtcgccttactttccaaagaacggagagtttagtgcaatctgaggctgtgctatcaaaagaaggatcaccgaagtctctagctgatattaatcagaagataggccagtcatcttcaaaatccaagaaaaaaggaaatcagaaaaaatctgggtctaatgtctcatcgtctgatggattgagcaaagatttgaaagttgaccacagttatttggccagttcatatcatactggaatcatctctggttttacattgatatcttctcatttggatggtttggcatctacgggaggcatggtgagatcagtagtaattggtcttggagcaggattgcttcccatgtttctacgtaagcacctgagttttgcagagattgaggttttggagttggatcctgtggttgtagatcttgctagagactattttgattttagagatgatgaacggttaaaggtacatgtgactgatggtttgaagtacgtcaaggatgcagctcatgcagttaccaatggttatgaaaatgatgtttctgaggcaaaggtcccttcttccaatggtaattccaccctgtctaatgcaccacttaaaagcacagaaaaaattgacatgctcattgttgatgtggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="27643" stop="30192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27933" g_stop="28125" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28126" i_stop="28319" i_length="194">
            <donor d_prob="0.279" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28320" g_stop="28441" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="314" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28442" i_stop="28967" i_length="526">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28968" g_stop="29048" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="395" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29049" i_stop="29129" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29130" g_stop="29204" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="470" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29205" i_stop="29716" i_length="512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29717" g_stop="29892" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="646" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E540448" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27933" e_stop="28125"/>
          <exon e_start="28320" e_stop="28441"/>
          <exon e_start="28968" e_stop="29048"/>
          <exon e_start="29130" e_stop="29204"/>
          <exon e_start="29717" e_stop="29892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAGGATGTGATATTTCGTCGCCTTACTTTCCAAAGAACGGAGAGTTTAGTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAGAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATGGTAGCTTTACGATCCTTCATACTCTTACGCCCTCTTTTTTCATCAAACCTTGCCCTAATTCTAATTTATATGATATGTTTCGAATAGTGGAAAGGAGAACTGAAGCCATTTGAATGTACTTATGAGATTTATGTGAAGGCATCAATTCTAACTTTGAGTCAGTACAATGTGCAATTAAATTAATTCTTTTGCAGGATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTCTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATGGTAAGAAGTTAACTTGTATCTTTTTTTCTAAAAAGAAGACTTGCATATATGAATTTTTGTCATTTATATTAACCGAAACATCTCTTAACACATTGTGTAAAAACAACTCGACAGATCATTAGGTTAAGCAACACTCTTATCATACTAGAGTACAGAACACTAGTTAGTTGGTTGCTGATGAAACGTAACATAAACAACATTTGAAGTCAGAACCACGCTAACCTAAATGTCCACTGAGCAAATTTATTGTGCTAAGACTGCACATCCTGCCGTTTTCCATTGCCATTATTGCATAGCAAAGTTAGTATAAAGAACAATAAGTACTGTAATAGAGTTCTAAAATCTGTCCTTTACGCACAAAAATGCATAGTCATCCACCCACCCACATATTTATCCATATTGAGAAGAATACAACATCTATGAACTAGAATATAGCTTCTGTAATTTTATACCATGTGAAGTTCTAGCTCATCTTGGGAAGTACATGTGATGCTTTAGCTAAAGCTGCAGTTGTTGCTTTTTTCAGGTGAGATCAGTAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTTCTACGTAAGCACCTGAGTTTTGCAGAGATTGAGGTAAGTTATGGCTACCTAAATGTGCCACCTTTAAATTATTATTTCTTACCTTGCCAAACTGGCTCATAATGATATTCACAGGTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGATTTTAGAGATGATGAACGGTTAAAGGTAATTTGCAGTCTTCCCTCCACCTCTTACTTCTGTTCCCTCTCTCTTGCTTATTCCTCATTAATAAGTTAATAACTAAATGCAAGTGTAGGCAGTATCAACAACATACCCAGTGTGATCCTATAAGTGGGGTCTGCGGAGGGTGGGGTGCATGCAGACCTTAATCCCTATAAGAGGGATCTGGGTTTACAGACTATTTCCAATAGACCCTCGGCTCAAAGCGTAAACCTTATTGAAAAAAAGAAAAGAAAACTAAAGGCGATGCAAGATACAACATCCATTCAAGATCACCCAAGATTTTCAATCTATGTTTGACTATATTCTTGGTGGCAATTTTCTTATGAATTAAAATTCCAAGGTGAATAAAATGAAAAATGTGTTTTAAAAAAACCATATGTTACATTGGGTCACCCGTATCTCTTATTAAAACAATATAAGAAGTGTAACTCAGAAATCAGATGCTTGTGAAACCTTATAACTGTCGTCTTCTATTAATGTTTTTGGTGTTTCAGGTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCATTGTTGATGTGGATTC</genome_strand>
        <mrna_strand>CCCCGGGCTG-CAGGTTTCGTCGCCTTACTTTCCAAAGAACGGAGAGTTTAGTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAGAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATG..................................................................................................................................................................................................GATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTCTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATCAGTAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTTCTACGTAAGCACCTGAGTTTTGCAGAGATTGAG.................................................................................GTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGATTTTAGAGATGATGAACGGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCATTGTTGATGTGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E540441" ref_strand="+" ref_description="SGN-E540441 [TUS-60-L12]">
      <seq>tttcgtcgccttactttccaaagaacggagagtttagtgcaatctgaggctgtgctatcaaaagaaggatcaccgaagtctctagctgatattaatcagaagataggccagtcatcttcaaaatccaagaaaaaaggaaatcagaaaaaatctgggtctaatgtctcatcgtctgatggattgagcaaagatttgaaagttgaccacagttatttggccagttcatatcatactggaatcatctctggttttacattgatatcttctcatttggatggtttggcatctacgggaggcatggtgagatcagtagtaattggtcttggagcaggattgcttcccatgtttctacgtaagcacctgagttttgcagagattgaggttttggagttggatcctgtggttgtagatcttgctagagactattttgattttagagatgatgaacggttaaaggtacatgtgactgatggtttgaagtacgtcaaggatgcagctcatgcagttaccaatggttatgaaaatgatgtttctgaggcaaaggtcccttcttccaatggtaattccaccctgtctaatgcaccactttaaagcacagaaaaaaattgacatgctcattggtgatgtggnattctcagactcgagttctggtttaaagtgccctgctgcagactttattgaagagtcttttcttatggcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="27648" stop="30368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27948" g_stop="28125" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28126" i_stop="28319" i_length="194">
            <donor d_prob="0.279" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28320" g_stop="28441" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="300" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28442" i_stop="28967" i_length="526">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28968" g_stop="29048" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="381" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29049" i_stop="29129" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29130" g_stop="29204" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="456" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29205" i_stop="29716" i_length="512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29717" g_stop="29904" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="645" r_length="189" r_score="0.957"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29905" i_stop="30011" i_length="107">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30012" g_stop="30068" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="702" r_length="57" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E540441" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27948" e_stop="28125"/>
          <exon e_start="28320" e_stop="28441"/>
          <exon e_start="28968" e_stop="29048"/>
          <exon e_start="29130" e_stop="29204"/>
          <exon e_start="29717" e_stop="29904"/>
          <exon e_start="30012" e_stop="30068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGTCGCCTTACTTTCCAAAGAACGGAGAGTTTAGTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAGAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATGGTAGCTTTACGATCCTTCATACTCTTACGCCCTCTTTTTTCATCAAACCTTGCCCTAATTCTAATTTATATGATATGTTTCGAATAGTGGAAAGGAGAACTGAAGCCATTTGAATGTACTTATGAGATTTATGTGAAGGCATCAATTCTAACTTTGAGTCAGTACAATGTGCAATTAAATTAATTCTTTTGCAGGATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTCTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATGGTAAGAAGTTAACTTGTATCTTTTTTTCTAAAAAGAAGACTTGCATATATGAATTTTTGTCATTTATATTAACCGAAACATCTCTTAACACATTGTGTAAAAACAACTCGACAGATCATTAGGTTAAGCAACACTCTTATCATACTAGAGTACAGAACACTAGTTAGTTGGTTGCTGATGAAACGTAACATAAACAACATTTGAAGTCAGAACCACGCTAACCTAAATGTCCACTGAGCAAATTTATTGTGCTAAGACTGCACATCCTGCCGTTTTCCATTGCCATTATTGCATAGCAAAGTTAGTATAAAGAACAATAAGTACTGTAATAGAGTTCTAAAATCTGTCCTTTACGCACAAAAATGCATAGTCATCCACCCACCCACATATTTATCCATATTGAGAAGAATACAACATCTATGAACTAGAATATAGCTTCTGTAATTTTATACCATGTGAAGTTCTAGCTCATCTTGGGAAGTACATGTGATGCTTTAGCTAAAGCTGCAGTTGTTGCTTTTTTCAGGTGAGATCAGTAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTTCTACGTAAGCACCTGAGTTTTGCAGAGATTGAGGTAAGTTATGGCTACCTAAATGTGCCACCTTTAAATTATTATTTCTTACCTTGCCAAACTGGCTCATAATGATATTCACAGGTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGATTTTAGAGATGATGAACGGTTAAAGGTAATTTGCAGTCTTCCCTCCACCTCTTACTTCTGTTCCCTCTCTCTTGCTTATTCCTCATTAATAAGTTAATAACTAAATGCAAGTGTAGGCAGTATCAACAACATACCCAGTGTGATCCTATAAGTGGGGTCTGCGGAGGGTGGGGTGCATGCAGACCTTAATCCCTATAAGAGGGATCTGGGTTTACAGACTATTTCCAATAGACCCTCGGCTCAAAGCGTAAACCTTATTGAAAAAAAGAAAAGAAAACTAAAGGCGATGCAAGATACAACATCCATTCAAGATCACCCAAGATTTTCAATCTATGTTTGACTATATTCTTGGTGGCAATTTTCTTATGAATTAAAATTCCAAGGTGAATAAAATGAAAAATGTGTTTTAAAAAAACCATATGTTACATTGGGTCACCCGTATCTCTTATTAAAACAATATAAGAAGTGTAACTCAGAAATCAGATGCTTGTGAAACCTTATAACTGTCGTCTTCTATTAATGTTTTTGGTGTTTCAGGTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAG-AAAAAATTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAGGTAAATGGGTCTATTCACCATGTGTTTCTTCTTACGTATATCTTTCCTTTTTCGCTATATCACCATATTCAGTAGCTAATTGTTGAACTTTTTTCTCTGGTTCGCAGTTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGC</genome_strand>
        <mrna_strand>TTTCGTCGCCTTACTTTCCAAAGAACGGAGAGTTTAGTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAGAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATG..................................................................................................................................................................................................GATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTCTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATCAGTAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTTCTACGTAAGCACCTGAGTTTTGCAGAGATTGAG.................................................................................GTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGATTTTAGAGATGATGAACGGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTTAAAGCACAGAAAAAAATTGACATGCTCATTGGTGATGTGGNATTCTCAGACTCGAG...........................................................................................................TTCTGGTTTAAAGTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E288853" ref_strand="+" ref_description="SGN-E288853 [cLES-17-D2]">
      <seq>actttccaaagaacggagagtttactgcaatctgaggctgtgctatcaaaagaaggatcaccgaagtctctagctgatattaatcaaaagataggccagtcatcttcaaaatccaagaaaaaaggaaatcagaaaaaatctgggtctaatgtctcatcgtctgatggattgagcaaagatttgaaagttgaccacagttatttggccagttcatatcatactggaatcatctgtggttttacattgatatcttctcatttggatggtttggcatctacgggaggcatggtgagatcagcagtaattggtcttggagcaggattgcttcccatgttgctacgtaagcacctgagatttgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="27660" stop="29340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27960" g_stop="28125" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28126" i_stop="28319" i_length="194">
            <donor d_prob="0.279" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28320" g_stop="28441" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="288" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28442" i_stop="28967" i_length="526">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28968" g_stop="29040" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="361" r_length="73" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E288853" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27960" e_stop="28125"/>
          <exon e_start="28320" e_stop="28441"/>
          <exon e_start="28968" e_stop="29040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCCAAAGAACGGAGAGTTTAGTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAGAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATGGTAGCTTTACGATCCTTCATACTCTTACGCCCTCTTTTTTCATCAAACCTTGCCCTAATTCTAATTTATATGATATGTTTCGAATAGTGGAAAGGAGAACTGAAGCCATTTGAATGTACTTATGAGATTTATGTGAAGGCATCAATTCTAACTTTGAGTCAGTACAATGTGCAATTAAATTAATTCTTTTGCAGGATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTCTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATGGTAAGAAGTTAACTTGTATCTTTTTTTCTAAAAAGAAGACTTGCATATATGAATTTTTGTCATTTATATTAACCGAAACATCTCTTAACACATTGTGTAAAAACAACTCGACAGATCATTAGGTTAAGCAACACTCTTATCATACTAGAGTACAGAACACTAGTTAGTTGGTTGCTGATGAAACGTAACATAAACAACATTTGAAGTCAGAACCACGCTAACCTAAATGTCCACTGAGCAAATTTATTGTGCTAAGACTGCACATCCTGCCGTTTTCCATTGCCATTATTGCATAGCAAAGTTAGTATAAAGAACAATAAGTACTGTAATAGAGTTCTAAAATCTGTCCTTTACGCACAAAAATGCATAGTCATCCACCCACCCACATATTTATCCATATTGAGAAGAATACAACATCTATGAACTAGAATATAGCTTCTGTAATTTTATACCATGTGAAGTTCTAGCTCATCTTGGGAAGTACATGTGATGCTTTAGCTAAAGCTGCAGTTGTTGCTTTTTTCAGGTGAGATCAGTAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTTCTACGTAAGCACCTGAGTTTTGCAG</genome_strand>
        <mrna_strand>ACTTTCCAAAGAACGGAGAGTTTACTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAAAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATG..................................................................................................................................................................................................GATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTGTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGATCAGCAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTGCTACGTAAGCACCTGAGATTTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E322506" ref_strand="+" ref_description="SGN-E322506 [cTOB-26-O22]">
      <seq>tgagttttgcagagattgaggttttggagttggatcctgtggttgtagatcttgctagagactattttgattttagagatgatgaacggttaaaggtacatgtgactgatggtttgaagtacgtcaaggatgcagctcatgcagttaccaatggttatgaaaatgatgtttctgaggcaaaggtcccttcttccaatggtaattccaccctgtctaatgcaccacttaaaagcacagaaaaaattgacatgctcattgttgatgtggattcttcagactcgagttctggtttaagttgccctgctgcagactttattgaagagtcttttcttatggcagcaaaagattctctttctgatcaaggtctatttgtcataaatttggtatcgaggtcacaagccatcaaggattccatttactccaaattgaagtcggtatttcctcacctcttccaccttcagctggacgaagatgtcaatgaggttattttcgctctcaagacagagacatgtatcacggaagataaatttcacaaggcttctcaacgacttacaagattattaaacctagagaactcctcatggggccaaaatataacagaagccactagncagatcaaaaggttgagatgatttacgcattgatgaatgctatcgaatactgcagtctaggggcgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="28729" stop="31073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29029" g_stop="29048" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29049" i_stop="29129" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29130" g_stop="29204" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="95" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29205" i_stop="29716" i_length="512">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29717" g_stop="29904" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="283" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29905" i_stop="30011" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30012" g_stop="30162" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="434" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30163" i_stop="30526" i_length="364">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30527" g_stop="30773" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="681" r_length="247" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E322506" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29029" e_stop="29048"/>
          <exon e_start="29130" e_stop="29204"/>
          <exon e_start="29717" e_stop="29904"/>
          <exon e_start="30012" e_stop="30162"/>
          <exon e_start="30527" e_stop="30773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTTTGCAGAGATTGAGGTAAGTTATGGCTACCTAAATGTGCCACCTTTAAATTATTATTTCTTACCTTGCCAAACTGGCTCATAATGATATTCACAGGTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGATTTTAGAGATGATGAACGGTTAAAGGTAATTTGCAGTCTTCCCTCCACCTCTTACTTCTGTTCCCTCTCTCTTGCTTATTCCTCATTAATAAGTTAATAACTAAATGCAAGTGTAGGCAGTATCAACAACATACCCAGTGTGATCCTATAAGTGGGGTCTGCGGAGGGTGGGGTGCATGCAGACCTTAATCCCTATAAGAGGGATCTGGGTTTACAGACTATTTCCAATAGACCCTCGGCTCAAAGCGTAAACCTTATTGAAAAAAAGAAAAGAAAACTAAAGGCGATGCAAGATACAACATCCATTCAAGATCACCCAAGATTTTCAATCTATGTTTGACTATATTCTTGGTGGCAATTTTCTTATGAATTAAAATTCCAAGGTGAATAAAATGAAAAATGTGTTTTAAAAAAACCATATGTTACATTGGGTCACCCGTATCTCTTATTAAAACAATATAAGAAGTGTAACTCAGAAATCAGATGCTTGTGAAACCTTATAACTGTCGTCTTCTATTAATGTTTTTGGTGTTTCAGGTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAGGTAAATGGGTCTATTCACCATGTGTTTCTTCTTACGTATATCTTTCCTTTTTCGCTATATCACCATATTCAGTAGCTAATTGTTGAACTTTTTTCTCTGGTTCGCAGTTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCGGTGAGTACTAAACTCTTCTTGACACGAATTTGTGAATTACATCGTAGCTCTTTGTCCTCCAAGGAATGTGCTTACCTATCCGGTAATTATGTTTATCTGACACCAAAATTGCTGCCACGCCTTGTCAGATCCTCCAAAAATATTAGTAATACTTTTGGAGGATATCCGGCATATGAATCAGTCTGACATTTTTGAAGAGTCCGAGCAACATTGCTGCCCAACATCCATATATTGGTGCTTTCTGTTTGATAGCAGATCATCCATAATGCATTAGTTGACTCACTCGCGCAATTAGATGAAATTAGCTTAAGCTCACATGGCTTTTAGATGCTTAATCTGAATCACATTGTGTGTTTTTCTCCAGGTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCT</genome_strand>
        <mrna_strand>TGAGTTTTGCAGAGATTGAG.................................................................................GTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGATTTTAGAGATGATGAACGGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAG...........................................................................................................TTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCG............................................................................................................................................................................................................................................................................................................................................................................GTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGNCAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E322758" ref_strand="+" ref_description="SGN-E322758 [cTOB-26-P22]">
      <seq>tgagttttgcagagatttgaggttttggagttggatcctgtggttgtagatcttgctagagactattttgtttttagagatgatgaacggttaaaggtacatgtgactgatggtttgaagtacgtcaaggatgcagctcatgcagttaccaatggttatgaaaatgatgtttctgaggcaaaggtcccttcttccaatggtaattccaccctgtctaatgcaccacttaaaagcacagaaaaaattgacatgctccattgttgatgtggattcttccagactcgagttctggtttaagttgccctgctgcagactttattgaagagtcttttcttatggcagcaaaagattctctttctgatcaaggtctatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="28729" stop="30401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29029" g_stop="29048" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29049" i_stop="29129" i_length="81">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29130" g_stop="29204" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="96" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29205" i_stop="29716" i_length="512">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29717" g_stop="29904" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="286" r_length="190" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29905" i_stop="30011" i_length="107">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30012" g_stop="30101" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="376" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E322758" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29029" e_stop="29048"/>
          <exon e_start="29130" e_stop="29204"/>
          <exon e_start="29717" e_stop="29904"/>
          <exon e_start="30012" e_stop="30101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTTTGCAGAGA-TTGAGGTAAGTTATGGCTACCTAAATGTGCCACCTTTAAATTATTATTTCTTACCTTGCCAAACTGGCTCATAATGATATTCACAGGTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGATTTTAGAGATGATGAACGGTTAAAGGTAATTTGCAGTCTTCCCTCCACCTCTTACTTCTGTTCCCTCTCTCTTGCTTATTCCTCATTAATAAGTTAATAACTAAATGCAAGTGTAGGCAGTATCAACAACATACCCAGTGTGATCCTATAAGTGGGGTCTGCGGAGGGTGGGGTGCATGCAGACCTTAATCCCTATAAGAGGGATCTGGGTTTACAGACTATTTCCAATAGACCCTCGGCTCAAAGCGTAAACCTTATTGAAAAAAAGAAAAGAAAACTAAAGGCGATGCAAGATACAACATCCATTCAAGATCACCCAAGATTTTCAATCTATGTTTGACTATATTCTTGGTGGCAATTTTCTTATGAATTAAAATTCCAAGGTGAATAAAATGAAAAATGTGTTTTAAAAAAACCATATGTTACATTGGGTCACCCGTATCTCTTATTAAAACAATATAAGAAGTGTAACTCAGAAATCAGATGCTTGTGAAACCTTATAACTGTCGTCTTCTATTAATGTTTTTGGTGTTTCAGGTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCT-CATTGTTGATGTGGATTCTT-CAGACTCGAGGTAAATGGGTCTATTCACCATGTGTTTCTTCTTACGTATATCTTTCCTTTTTCGCTATATCACCATATTCAGTAGCTAATTGTTGAACTTTTTTCTCTGGTTCGCAGTTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGT</genome_strand>
        <mrna_strand>TGAGTTTTGCAGAGATTTGAG.................................................................................GTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGTTTTTAGAGATGATGAACGGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCCATTGTTGATGTGGATTCTTCCAGACTCGAG...........................................................................................................TTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E548385" ref_strand="-" ref_description="SGN-E548385 [TUS-60-L12]">
      <seq>aaaggtacatgtgactgatggtttgaagtacgtcaaggatgcagctcatgcagttaccaatggttatgaaaatgatgttctgaggcaaaggtcccttcttccaatggtaatccacccctgtctaatgcaccacttaaaagcacagaaaaaattgacatgctcattgttgatgtggattcttcagactcgagttctggtttaagttgccctgctgcagactttattgaagagtcttttcttatggcagcaaaagattctctttctgatcaaggtctatttgtcataaatttggtatcgaggtcacaagccatcaaggattccatttactccaaattgaagtcggtatttcctcacctcttccaccttcagctggacgaagatgtcaatgaggttattttcgctctcaagacagagacatgtatcacggaagataaatttcacaaggcttctcaacgacttacaagattattaaacctagagaactcctcatggggccaaaatataacagaagccactagcaagatcaaaaggttgagatgatttacgcattgatgaatgctatcgaatactgcagtctaggggcgaagctagaagcacaagtatgagttaattcagcctgaactataaacccttaaagttcaaattctagctccgcctccatccatgcctgctgaggctgccaataaatcaatgcacttctttttaagtacctcttcgtcgaaccactgattatcccccttcaagtttgatatttacatgccttgagatttataacatatagtattgaaattgctatgtacattggataaatttgatatgtttgtcaaagttatataatgagtttatatatatcttgttattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="29415" stop="31348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29559" g_stop="29562" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29563" i_stop="29716" i_length="154">
            <donor d_prob="0.798" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29717" g_stop="29904" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="191" r_length="187" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29905" i_stop="30011" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30012" g_stop="30162" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="342" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30163" i_stop="30526" i_length="364">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30527" g_stop="31055" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="871" r_length="529" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E548385" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548385" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29559" e_stop="29562"/>
          <exon e_start="29717" e_stop="29904"/>
          <exon e_start="30012" e_stop="30162"/>
          <exon e_start="30527" e_stop="31055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTGAATAAAATGAAAAATGTGTTTTAAAAAAACCATATGTTACATTGGGTCACCCGTATCTCTTATTAAAACAATATAAGAAGTGTAACTCAGAAATCAGATGCTTGTGAAACCTTATAACTGTCGTCTTCTATTAATGTTTTTGGTGTTTCAGGTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAGGTAAATGGGTCTATTCACCATGTGTTTCTTCTTACGTATATCTTTCCTTTTTCGCTATATCACCATATTCAGTAGCTAATTGTTGAACTTTTTTCTCTGGTTCGCAGTTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCGGTGAGTACTAAACTCTTCTTGACACGAATTTGTGAATTACATCGTAGCTCTTTGTCCTCCAAGGAATGTGCTTACCTATCCGGTAATTATGTTTATCTGACACCAAAATTGCTGCCACGCCTTGTCAGATCCTCCAAAAATATTAGTAATACTTTTGGAGGATATCCGGCATATGAATCAGTCTGACATTTTTGAAGAGTCCGAGCAACATTGCTGCCCAACATCCATATATTGGTGCTTTCTGTTTGATAGCAGATCATCCATAATGCATTAGTTGACTCACTCGCGCAATTAGATGAAATTAGCTTAAGCTCACATGGCTTTTAGATGCTTAATCTGAATCACATTGTGTGTTTTTCTCCAGGTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCTAGAAGCACAAGTATGAGTTAATTCAGCCTGAACTATAAACCCTTAAAGTTCAAATTCTAGCTCCGCCTCCATCCATGCCTGCTGAGGCTGCCAATAAATCAATGCACTTCTTTTTAAGTACCTCTTCGTCGAACCACTGATTATCCCCCTTCAAGTTTGATATTTACATGCCTTGAGATTTATAACATATAGTATTGAAATTGCTATGTACATTGGATAAATTTGATATGTTTGTCAAAGTTATATAATGAGTTTATATATATCTTGTTATTCAATGTTCTT</genome_strand>
        <mrna_strand>AAAG..........................................................................................................................................................GTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATG-TTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATCCACCCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAG...........................................................................................................TTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCG............................................................................................................................................................................................................................................................................................................................................................................GTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCTAGAAGCACAAGTATGAGTTAATTCAGCCTGAACTATAAACCCTTAAAGTTCAAATTCTAGCTCCGCCTCCATCCATGCCTGCTGAGGCTGCCAATAAATCAATGCACTTCTTTTTAAGTACCTCTTCGTCGAACCACTGATTATCCCCCTTCAAGTTTGATATTTACATGCCTTGAGATTTATAACATATAGTATTGAAATTGCTATGTACATTGGATAAATTTGATATGTTTGTCAAAGTTATATAATGAGTTTATATATATCTTGTTATTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E348538" ref_strand="+" ref_description="SGN-E348538 [cTOF-30-D2]">
      <seq>gtaattccaccctgtctaatgcaccacttaaaagcacagaaaaaattgacatgctcattgttgatgtggattcttcagactcgagttctggtttaagttgccctgctgcagactttattgaagagtcttttcttatggcagcaaaagattctctttctgatcaaggtctatttgtcataaatttggtatcgaggtcacaagccatcaaggattccatttactccaaattgaagtcggtatttcctcacctcttccaccttcagctggacgaagatgtcaatgaggttattttcgctctcaagacagagacatgtatcacggaagataaatttcacaaggcttctcaacgacttacaagattattaaacctagagaactcctcatggggccaaaatataacagaagccactagcaagatcaaaaggttgagatgatttacgcattgatgaatgctatcgaatactgcagtctaggggcgaagctagaagcacaagtatgagttaattcagcctgaactataaacccttaaagttcaaattctagctccgcctccatccatgcctgctgaggctgccaataaatcaatgcacttctttttaagtacctcttcgtcgaaccactgattatcccccttcaagtttgatatttacatgccttgagatttataacatatagtattgaaattgctatgtacattggataaatttgatatgtttgtcaaagttatataatgagtttatataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="29520" stop="31335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29820" g_stop="29904" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29905" i_stop="30011" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30012" g_stop="30162" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="236" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30163" i_stop="30526" i_length="364">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30527" g_stop="31041" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="751" r_length="515" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E348538" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29820" e_stop="29904"/>
          <exon e_start="30012" e_stop="30162"/>
          <exon e_start="30527" e_stop="31041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAGGTAAATGGGTCTATTCACCATGTGTTTCTTCTTACGTATATCTTTCCTTTTTCGCTATATCACCATATTCAGTAGCTAATTGTTGAACTTTTTTCTCTGGTTCGCAGTTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCGGTGAGTACTAAACTCTTCTTGACACGAATTTGTGAATTACATCGTAGCTCTTTGTCCTCCAAGGAATGTGCTTACCTATCCGGTAATTATGTTTATCTGACACCAAAATTGCTGCCACGCCTTGTCAGATCCTCCAAAAATATTAGTAATACTTTTGGAGGATATCCGGCATATGAATCAGTCTGACATTTTTGAAGAGTCCGAGCAACATTGCTGCCCAACATCCATATATTGGTGCTTTCTGTTTGATAGCAGATCATCCATAATGCATTAGTTGACTCACTCGCGCAATTAGATGAAATTAGCTTAAGCTCACATGGCTTTTAGATGCTTAATCTGAATCACATTGTGTGTTTTTCTCCAGGTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCTAGAAGCACAAGTATGAGTTAATTCAGCCTGAACTATAAACCCTTAAAGTTCAAATTCTAGCTCCGCCTCCATCCATGCCTGCTGAGGCTGCCAATAAATCAATGCACTTCTTTTTAAGTACCTCTTCGTCGAACCACTGATTATCCCCCTTCAAGTTTGATATTTACATGCCTTGAGATTTATAACATATAGTATTGAAATTGCTATGTACATTGGATAAATTTGATATGTTTGTCAAAGTTATATAATGAGTTTATATATATCTTGT</genome_strand>
        <mrna_strand>GTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAG...........................................................................................................TTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCG............................................................................................................................................................................................................................................................................................................................................................................GTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCTAGAAGCACAAGTATGAGTTAATTCAGCCTGAACTATAAACCCTTAAAGTTCAAATTCTAGCTCCGCCTCCATCCATGCCTGCTGAGGCTGCCAATAAATCAATGCACTTCTTTTTAAGTACCTCTTCGTCGAACCACTGATTATCCCCCTTCAAGTTTGATATTTACATGCCTTGAGATTTATAACATATAGTATTGAAATTGCTATGTACATTGGATAAATTTGATATGTTTGTCAAAGTTATATAATGAGTTTATATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E540445" ref_strand="-" ref_description="SGN-E540445 [TUS-60-L16]">
      <seq>gaaaaaattgacatgttcattgttgatgtggattcttcagacttgagttctggtttaagttgccatgctgccagactttattgaagagtctttttttatggcagcaaaagattctctttctgatcaaggtctatttgtcataaatttggtatcgaggtcacaagccatcaaggattccatttactccaaattgaagtcggtatttcctcacctcttccaccttcagctggacgaagatgtcaatgaggttattttcgctctcaagacagagacatgtatcacggaagataaatttcacaaggcttctcaacgacttacaagattattaaacctagagaactcgtcatggggccaaaatataacagaagccactagcaagatcaaaaggttgagatgatttacgcattgatgaatgctatcgaatactgcagtctaggggcgaagctagaagcacaagtatgagttaattcagcctgaactataaacccttaaagttcaaattctagctccgcctccatccatgcctgctgaggctgccaataaatcaatgcacttctttttaagtacctcttcgtcgaaccactgattatcccccttcaagtttgatatttacatgccttgagatttataacatatagtattgaaattgctatgtacattggataaatttgatatgtttgtcaaagttatataatgagtttatatatatcttgttttcatttagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="29558" stop="31352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29858" g_stop="29904" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29905" i_stop="30011" i_length="107">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30012" g_stop="30162" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="199" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30163" i_stop="30526" i_length="364">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30527" g_stop="31055" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="727" r_length="528" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E540445" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540445" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29858" e_stop="29904"/>
          <exon e_start="30012" e_stop="30162"/>
          <exon e_start="30527" e_stop="31055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAGGTAAATGGGTCTATTCACCATGTGTTTCTTCTTACGTATATCTTTCCTTTTTCGCTATATCACCATATTCAGTAGCTAATTGTTGAACTTTTTTCTCTGGTTCGCAGTTCTGGTTTAAGTTGCCCTGCTG-CAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCGGTGAGTACTAAACTCTTCTTGACACGAATTTGTGAATTACATCGTAGCTCTTTGTCCTCCAAGGAATGTGCTTACCTATCCGGTAATTATGTTTATCTGACACCAAAATTGCTGCCACGCCTTGTCAGATCCTCCAAAAATATTAGTAATACTTTTGGAGGATATCCGGCATATGAATCAGTCTGACATTTTTGAAGAGTCCGAGCAACATTGCTGCCCAACATCCATATATTGGTGCTTTCTGTTTGATAGCAGATCATCCATAATGCATTAGTTGACTCACTCGCGCAATTAGATGAAATTAGCTTAAGCTCACATGGCTTTTAGATGCTTAATCTGAATCACATTGTGTGTTTTTCTCCAGGTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCTAGAAGCACAAGTATGAGTTAATTCAGCCTGAACTATAAACCCTTAAAGTTCAAATTCTAGCTCCGCCTCCATCCATGCCTGCTGAGGCTGCCAATAAATCAATGCACTTCTTTTTAAGTACCTCTTCGTCGAACCACTGATTATCCCCCTTCAAGTTTGATATTTACATGCCTTGAGATTTATAACATATAGTATTGAAATTGCTATGTACATTGGATAAATTTGATATGTTTGTCAAAGTTATATAATGAGTTTATATATATCTTGTTATTCAATGTTCTT</genome_strand>
        <mrna_strand>GAAAAAATTGACATGTTCATTGTTGATGTGGATTCTTCAGACTTGAG...........................................................................................................TTCTGGTTTAAGTTGCCATGCTGCCAGACTTTATTGAAGAGTCTTTTTTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCG............................................................................................................................................................................................................................................................................................................................................................................GTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCGTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCTAGAAGCACAAGTATGAGTTAATTCAGCCTGAACTATAAACCCTTAAAGTTCAAATTCTAGCTCCGCCTCCATCCATGCCTGCTGAGGCTGCCAATAAATCAATGCACTTCTTTTTAAGTACCTCTTCGTCGAACCACTGATTATCCCCCTTCAAGTTTGATATTTACATGCCTTGAGATTTATAACATATAGTATTGAAATTGCTATGTACATTGGATAAATTTGATATGTTTGTCAAAGTTATATAATGAGTTTATATATATCTTGTT-TTCATTTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E343025" ref_strand="+" ref_description="SGN-E343025 [cTOF-11-M3]">
      <seq>ttgacatgctcattgttgatgtggattcttcagactcgagttctggtttaagttgccctgctgcagactttattgaagagtcttttcttatggcagcaaaagattctctttctgatcaaggtctatttgtcataaatttggtatcgaggtcacaagccatcaaggattccatttactccaaattgaagtcggtatttcctcacctcttccaccttcagctggacgaagatgtcaatgaggttattttcgctctcaagacagagacatgtatcacggaagataaatttcacaaggcttctcaacgacttacaagattattaaacctagagaactcctcatggggccaaaatataacagaagccactagcaagatcaaaaggttgagatgatttacgcattgatgaatgctatcgaatactgcagtctaggggcgaagctagaagcacaagtatgagttaattcagcctgaactataaacccttaaagttcaaattctagctccgcctccatccatgcctgctgaggctgccaataaatcaatgcacttctttttaagtacctcttcgtcgaaccactgattatcccccttcaagtttgatatttacatgccttgagatttataacatatagtattgaaattgctatgtacattggataaatttgatatgtttgtcaaagttatataatgagtttatataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="29565" stop="31335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29865" g_stop="29904" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29905" i_stop="30011" i_length="107">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30012" g_stop="30162" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="191" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30163" i_stop="30526" i_length="364">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30527" g_stop="31032" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="697" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="711"/>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E343025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29865" e_stop="29904"/>
          <exon e_start="30012" e_stop="30162"/>
          <exon e_start="30527" e_stop="31032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAGGTAAATGGGTCTATTCACCATGTGTTTCTTCTTACGTATATCTTTCCTTTTTCGCTATATCACCATATTCAGTAGCTAATTGTTGAACTTTTTTCTCTGGTTCGCAGTTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCGGTGAGTACTAAACTCTTCTTGACACGAATTTGTGAATTACATCGTAGCTCTTTGTCCTCCAAGGAATGTGCTTACCTATCCGGTAATTATGTTTATCTGACACCAAAATTGCTGCCACGCCTTGTCAGATCCTCCAAAAATATTAGTAATACTTTTGGAGGATATCCGGCATATGAATCAGTCTGACATTTTTGAAGAGTCCGAGCAACATTGCTGCCCAACATCCATATATTGGTGCTTTCTGTTTGATAGCAGATCATCCATAATGCATTAGTTGACTCACTCGCGCAATTAGATGAAATTAGCTTAAGCTCACATGGCTTTTAGATGCTTAATCTGAATCACATTGTGTGTTTTTCTCCAGGTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCTAGAAGCACAAGTATGAGTTAATTCAGCCTGAACTATAAACCCTTAAAGTTCAAATTCTAGCTCCGCCTCCATCCATGCCTGCTGAGGCTGCCAATAAATCAATGCACTTCTTTTTAAGTACCTCTTCGTCGAACCACTGATTATCCCCCTTCAAGTTTGATATTTACATGCCTTGAGATTTATAACATATAGTATTGAAATTGCTATGTACATTGGATAAATTTGATATGTTTGTCAAAGTTATATAATGAGTTTATAT</genome_strand>
        <mrna_strand>TTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAG...........................................................................................................TTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCG............................................................................................................................................................................................................................................................................................................................................................................GTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCTAGAAGCACAAGTATGAGTTAATTCAGCCTGAACTATAAACCCTTAAAGTTCAAATTCTAGCTCCGCCTCCATCCATGCCTGCTGAGGCTGCCAATAAATCAATGCACTTCTTTTTAAGTACCTCTTCGTCGAACCACTGATTATCCCCCTTCAAGTTTGATATTTACATGCCTTGAGATTTATAACATATAGTATTGAAATTGCTATGTACATTGGATAAATTTGATATGTTTGTCAAAGTTATATAATGAGTTTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E548935" ref_strand="+" ref_description="SGN-E548935 [TUS-65-M12]">
      <seq>ggaagttcattagaagtaaaagcatgaagaaaacaccgggctgcagtctgattgagataaacagtttggtccaagaatttctatcaggtgataattcgaaaccattctcaaaagatatccatgaggtgctagagctattagccttacatcaaagcaaggaaaatgatctagttgacacaacgctcgagtacttaagtccatgaatatatcgaggagaagttgtcattctgagtgcatccgctcttttcttgttcaagtttttagcacattcgttatgtgtggaagttccaggaggagtaattcagatttgtgggataagcaaagacgggacgatgaactagaaagcacatatgtgagcctggaagtctaggccagacacacaacagagttcgatgcctgaaatgagattctacgaatacaaatttcactgatttcgcaggcattggtgacaaaggtacatactgcaatctttatgtgtaaacataggattgaaccactagtatccgtatgcaatcgccaagtagtaaacaactcatgatgtgantcgcttgttgcctttcaaacaacgagtaggtcattgtcgacatgtctgcttgcccctgtgaatgcatcatcaatcatctcacctattgaccttatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="35864" stop="37106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36164" g_stop="36806" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E548935" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36164" e_stop="36806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTTCATTAGAAGTAAAAGCATGAAGAAAACACCGGGCTGCAGTCTGATTGAGATAAACAGTTTGGTCCAAGAATTTCTATCAGGTGATAATTCGAAACCATTCTCAAAAGATATCCATGAGGTGCTAGAGCTATTAGCCTTACATCAAAGCAAGGAAAATGATCTAGTTGACACAACGCTCGAGTACTTAAGTCCATGAATATATCGAGGAGAAGTTGTCATTCTGAGTGCATCCGCTCTTTTCTTGTTCAAGTTTTTAGCACATTCGTTATGTGTGGAAGTTCCAGGAGGAGTAATTCAGATTTGTGGGATAAGCAAAGACGGGACGATGAACTAGAAAGCACATATGTGAGCCTGGAAGTCTAGGCCAGACACACAACAGAGTTCGATGCCTGAAATGAGATTCTACGAATACAAATTTCACTGATTTCGCAGGCATTGGTGACAAAGGTACATACTGCAATCTTTATGTGTAAACATAGGATTGAACCACTAGTATCCGTATGCAATCGCCAAGTAGTAAACAACTCATGATGTGATTTGCTTGTTGCCTTCAAAACAACGAGTAGGTCATTGTCGACATGTCTGCTTGCCCCTGTGAATGCATCATCAATCATCTCACCTATTGACCTATCAATG</genome_strand>
        <mrna_strand>GGAAGTTCATTAGAAGTAAAAGCATGAAGAAAACACCGGGCTGCAGTCTGATTGAGATAAACAGTTTGGTCCAAGAATTTCTATCAGGTGATAATTCGAAACCATTCTCAAAAGATATCCATGAGGTGCTAGAGCTATTAGCCTTACATCAAAGCAAGGAAAATGATCTAGTTGACACAACGCTCGAGTACTTAAGTCCATGAATATATCGAGGAGAAGTTGTCATTCTGAGTGCATCCGCTCTTTTCTTGTTCAAGTTTTTAGCACATTCGTTATGTGTGGAAGTTCCAGGAGGAGTAATTCAGATTTGTGGGATAAGCAAAGACGGGACGATGAACTAGAAAGCACATATGTGAGCCTGGAAGTCTAGGCCAGACACACAACAGAGTTCGATGCCTGAAATGAGATTCTACGAATACAAATTTCACTGATTTCGCAGGCATTGGTGACAAAGGTACATACTGCAATCTTTATGTGTAAACATAGGATTGAACCACTAGTATCCGTATGCAATCGCCAAGTAGTAAACAACTCATGATGTGANTCGCTTGTTGCCTTTCAAACAACGAGTAGGTCATTGTCGACATGTCTGCTTGCCCCTGTGAATGCATCATCAATCATCTCACCTATTGACCTTATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E306365" ref_strand="+" ref_description="SGN-E306365 [cLEX-13-H5]">
      <seq>gaagttcattagaagtaaaagcatgaagaaaacaccgggctgcagtctgattgagataaacagtttggtccaagaatttctatcaggtgataattcgaaaccattctcaaaagatatccatgaggtgctagagctattagccttacatcaaagcaaggaaaatgatctagttgacacaacgctcgagtacttaagtccatgaatatatcgaggagaagttgtcattctgagtgcatccgctcttttcttgttcaagtttttagcacattcgttatgtgtggaagttccaggaggagtaattcagatttgtgggataagcaaagacgggacgatgaactagaaagcacatatgtgagcctggaagtctaggccagacacacaacagagttcgatgcctgaaatgagattctacgaatacaaatttcactgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="35865" stop="36898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36165" g_stop="36598" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E306365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36165" e_stop="36598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCATTAGAAGTAAAAGCATGAAGAAAACACCGGGCTGCAGTCTGATTGAGATAAACAGTTTGGTCCAAGAATTTCTATCAGGTGATAATTCGAAACCATTCTCAAAAGATATCCATGAGGTGCTAGAGCTATTAGCCTTACATCAAAGCAAGGAAAATGATCTAGTTGACACAACGCTCGAGTACTTAAGTCCATGAATATATCGAGGAGAAGTTGTCATTCTGAGTGCATCCGCTCTTTTCTTGTTCAAGTTTTTAGCACATTCGTTATGTGTGGAAGTTCCAGGAGGAGTAATTCAGATTTGTGGGATAAGCAAAGACGGGACGATGAACTAGAAAGCACATATGTGAGCCTGGAAGTCTAGGCCAGACACACAACAGAGTTCGATGCCTGAAATGAGATTCTACGAATACAAATTTCACTGATTTC</genome_strand>
        <mrna_strand>GAAGTTCATTAGAAGTAAAAGCATGAAGAAAACACCGGGCTGCAGTCTGATTGAGATAAACAGTTTGGTCCAAGAATTTCTATCAGGTGATAATTCGAAACCATTCTCAAAAGATATCCATGAGGTGCTAGAGCTATTAGCCTTACATCAAAGCAAGGAAAATGATCTAGTTGACACAACGCTCGAGTACTTAAGTCCATGAATATATCGAGGAGAAGTTGTCATTCTGAGTGCATCCGCTCTTTTCTTGTTCAAGTTTTTAGCACATTCGTTATGTGTGGAAGTTCCAGGAGGAGTAATTCAGATTTGTGGGATAAGCAAAGACGGGACGATGAACTAGAAAGCACATATGTGAGCCTGGAAGTCTAGGCCAGACACACAACAGAGTTCGATGCCTGAAATGAGATTCTACGAATACAAATTTCACTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E306570" ref_strand="+" ref_description="SGN-E306570 [cLEX-13-H4]">
      <seq>gaagttcattagaagtaaaagcgtggggaaaacaccgggctgcagtctgattgagataaacagtttggtccgagaatttctatcaggtgataattcgaaaccattctcaaaagatatccatgaggtgctagagctattagccttacatctaagcaaggaaaatgatctagttgacacaacgctcgagtacttaagtccatgaatatatcgaggagaagttgtcattctgagtgcatccgctcttttcttgttcaagttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="35865" stop="36726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36165" g_stop="36426" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E306570" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36165" e_stop="36426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCATTAGAAGTAAAAGCATGAAGAAAACACCGGGCTGCAGTCTGATTGAGATAAACAGTTTGGTCCAAGAATTTCTATCAGGTGATAATTCGAAACCATTCTCAAAAGATATCCATGAGGTGCTAGAGCTATTAGCCTTACATCAAAGCAAGGAAAATGATCTAGTTGACACAACGCTCGAGTACTTAAGTCCATGAATATATCGAGGAGAAGTTGTCATTCTGAGTGCATCCGCTCTTTTCTTGTTCAAGTTTTTA</genome_strand>
        <mrna_strand>GAAGTTCATTAGAAGTAAAAGCGTGGGGAAAACACCGGGCTGCAGTCTGATTGAGATAAACAGTTTGGTCCGAGAATTTCTATCAGGTGATAATTCGAAACCATTCTCAAAAGATATCCATGAGGTGCTAGAGCTATTAGCCTTACATCTAAGCAAGGAAAATGATCTAGTTGACACAACGCTCGAGTACTTAAGTCCATGAATATATCGAGGAGAAGTTGTCATTCTGAGTGCATCCGCTCTTTTCTTGTTCAAGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E543784" ref_strand="+" ref_description="SGN-E543784 [TUS-65-M12]">
      <seq>tttttttttgacagaaaatactaattataagtatctataagtataatatttttttaaaaaaaaagacaaacggaaatagtatcacataaacgggaacaacagtaataatttgttttacaataaaacagaacttatgttggatgcatctaagtcagtctagagtgaccttctgtggattaagcttcagcaacatatatatagattcctcttatggtgatttatatttctctggcaacagcttcatttcacttccgaaaatgccctcatcgcctttttttataagaataacatcgatcagaggctcggaaatcatgcagagtgatagaacatagacaagtaagaaccagaagatcaacatattgtcattgataggtcaataggtgagatgattgatgatgcattcacaggggcaagcagacatgtcgacaatgacctactcgttgttttgaaggcaacaagcaaatcacatcatgagttgtttactacttggcgattgcatacggatactagtggttcaatcctatgtttacacataaagattgcagtatgtacctttgtcaccaatgcctgcgaaatcagtgaaatttgtattcgtagaatctcatttcaggcatcgaactctgttgtgtgtctggcctagacttccaggctcacatatgtgctttctagttcatcgtcccgtctttgcttatcccacaaatctgaattactcctcctggaacttccacacataacgaatgtgctaaaaacttgaacaagaaaagagcggatgcactcagaatgacaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="37461" stop="36080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37169" g_stop="36380" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E543784" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37169" e_stop="36380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGCAATGACAGAAAATACTAATTATAAGTATCTATAAGTATAATATTTTTTTAAAAAAAAAGACAAACGGAAATAGTATCACATAAACGGGAACAACAGTAATAATTTGTTTTACAATAAAACAGAACTTATGTTGGATGCATCTAAGTCAGTCTAGAGTGACCTTCTGTGGATTAAGCTTCAGCAACATATATATAGATTCCTCTTATGGTGATTTATATTTCTCTGGCAACAGCTTCATTTCACTTCCGAAAATGCCCTCATCGCCTTTTTTTATAAGAATAACATCGATCAGAGGCTCGGAAATCATGCAGAGTGATAGAACATAGACAAGTAAGAACCAGAAGATCAACATATTGTCATTGATAGGTCAATAGGTGAGATGATTGATGATGCATTCACAGGGGCAAGCAGACATGTCGACAATGACCTACTCGTTGTTTTGAAGGCAACAAGCAAATCACATCATGAGTTGTTTACTACTTGGCGATTGCATACGGATACTAGTGGTTCAATCCTATGTTTACACATAAAGATTGCAGTATGTACCTTTGTCACCAATGCCTGCGAAATCAGTGAAATTTGTATTCGTAGAATCTCATTTCAGGCATCGAACTCTGTTGTGTGTCTGGCCTAGACTTCCAGGCTCACATATGTGCTTTCTAGTTCATCGTCCCGTCTTTGCTTATCCCACAAATCTGAATTACTCCTCCTGGAACTTCCACACATAACGAATGTGCTAAAAACTTGAACAAGAAAAGAGCGGATGCACTCAGAATGACAACTT</genome_strand>
        <mrna_strand>TTTTTTTTTGACAGAAAATACTAATTATAAGTATCTATAAGTATAATATTTTTTTAAAAAAAAAGACAAACGGAAATAGTATCACATAAACGGGAACAACAGTAATAATTTGTTTTACAATAAAACAGAACTTATGTTGGATGCATCTAAGTCAGTCTAGAGTGACCTTCTGTGGATTAAGCTTCAGCAACATATATATAGATTCCTCTTATGGTGATTTATATTTCTCTGGCAACAGCTTCATTTCACTTCCGAAAATGCCCTCATCGCCTTTTTTTATAAGAATAACATCGATCAGAGGCTCGGAAATCATGCAGAGTGATAGAACATAGACAAGTAAGAACCAGAAGATCAACATATTGTCATTGATAGGTCAATAGGTGAGATGATTGATGATGCATTCACAGGGGCAAGCAGACATGTCGACAATGACCTACTCGTTGTTTTGAAGGCAACAAGCAAATCACATCATGAGTTGTTTACTACTTGGCGATTGCATACGGATACTAGTGGTTCAATCCTATGTTTACACATAAAGATTGCAGTATGTACCTTTGTCACCAATGCCTGCGAAATCAGTGAAATTTGTATTCGTAGAATCTCATTTCAGGCATCGAACTCTGTTGTGTGTCTGGCCTAGACTTCCAGGCTCACATATGTGCTTTCTAGTTCATCGTCCCGTCTTTGCTTATCCCACAAATCTGAATTACTCCTCCTGGAACTTCCACACATAACGAATGTGCTAAAAACTTGAACAAGAAAAGAGCGGATGCACTCAGAATGACAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E244130" ref_strand="+" ref_description="SGN-E244130 [cLEE-1-O1]">
      <seq>ctattctatttttctcattactttcacttatgctacattgataatgacacaaataccctcaacaaatggagttgtatgtgaagaagaacttcaagttccttgtaaggatggcaatgtattatattgtggctctatatgttatgaaaaatatagagaaaattatatgtcaacagagtgtgtggagaaatttgctggtaaccctatttgtgtgtgtatttacaagagtgagtatgcttgtccaccaaaccaaaaaaaatattagaaattatattttatttgcataaaaaaaatatttatctttatcagattatataatatataaagagttgttgcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="39667" stop="41319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39967" g_stop="39998" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39999" i_stop="40713" i_length="715">
            <donor d_prob="0.935" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40714" g_stop="41025" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="344" r_length="312" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E244130" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39967" e_stop="39998"/>
          <exon e_start="40714" e_stop="41025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCTATTTTTCTCATTACTTTCACTTATGGTATGTATACAATTATTATAATTTTATTTGCTTTTCAACTTCAACCATAATTATTTTCTCATTTCATGTGTCAAGTTGCTTTTGAATTGCACTTTAAAAAAAAAAACTTTTTTCTTCATTGAGTTTTTCCTTCTTGTGATTTTTGTATTCTTATACTAATTAAAAGAAAACGATCTATCGTATAAAAAAAACTAGAAAAGATCAAGATCTAAATTCTCGATCAATTGTTTTTGTGTTTCAGTGATATAGACAAAACTTAAATGATAGTCTAAAAAGAGATATGTATATACTAAATCAGCCGAGATGTTATTGAAATTATTTTAATTTTTTTAAAAATAATACTATTATAATTTCTTAATATTATAATTTTTATTTGCTTTTCTACTTGAACCATAATTATTTCTCATTTGTATCAAGTTGCTTTTTCATTGCACTAAAAAAAAAACTTTTTCTTCATTGAGTTTTTCCTTCTTGTGATTTTTGTATTCTTATACTAATTAAAGGTAAAACGATCGATCGTATAAAAAAATTATAGAAGATTAAAATTGAAATTCTCGATCCATTATTTTTGTATTTCAGTGCTATAGACAAAACTTAAATGATATTACTCTAAAAAGAGAAATGTACATAATAAATCAGTCGAAATGTCGTTGAACTTTTTTTTAAAAATAATTTTATTATATTTTCTTAATATTTTTTTTTAAAATTTTTGCAGCTACATTGATAATGACACAAATACCCTCAACAAATGGAGTTGTATGTGAAGAAGAACTTCAAGTTCCTTGTAAGGATGGCAATGTATTATATTGTGGCTCTATATGTTATGAAAAATATAGAGAAAATTATATGTCAACAGAGTGTGTGGAGAAATTTGCTGGTAACCCTATTTGTGTGTGTATTTACAAGAGTGAGTATGCTTGTCCACCAAACCAAAAAAAATATTAGAAATTATATTTTATTTGCATAAAAAAAATATTTATCTTTATCAGATTATATAATATATAAAGAGTTGTTGAGAAAACCTCTT</genome_strand>
        <mrna_strand>CTATTCTATTTTTCTCATTACTTTCACTTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATTGATAATGACACAAATACCCTCAACAAATGGAGTTGTATGTGAAGAAGAACTTCAAGTTCCTTGTAAGGATGGCAATGTATTATATTGTGGCTCTATATGTTATGAAAAATATAGAGAAAATTATATGTCAACAGAGTGTGTGGAGAAATTTGCTGGTAACCCTATTTGTGTGTGTATTTACAAGAGTGAGTATGCTTGTCCACCAAACCAAAAAAAATATTAGAAATTATATTTTATTTGCATAAAAAAAATATTTATCTTTATCAGATTATATAATATATAAAGAGTTGTTGCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E244096" ref_strand="+" ref_description="SGN-E244096 [cLEE-1-C23]">
      <seq>acaaataccctcaacaaatggagttgtatgtgaagaagaacttcaagttccttgtaaggatggcaatgtattatattgtggctctatatgttatgaaaaatatagagaaaattatatgtcaacagagtgtgtggagaaatttgctggtaaccctatttgtgtgtgtatttacaagagtgagtatgcttgtccaccaaaccaaaaaaaatattagaaattatattttatttgcataaaaaaaatatttatctttatcagattatataatatataaagagttgttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="40430" stop="54295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40730" g_stop="41019" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41020" i_stop="41530" i_length="511">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41531" g_stop="41553" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="313" r_length="23" r_score="0.609"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E244096" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40730" e_stop="41019"/>
          <exon e_start="41531" e_stop="41553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATACCCTCAACAAATGGAGTTGTATGTGAAGAAGAACTTCAAGTTCCTTGTAAGGATGGCAATGTATTATATTGTGGCTCTATATGTTATGAAAAATATAGAGAAAATTATATGTCAACAGAGTGTGTGGAGAAATTTGCTGGTAACCCTATTTGTGTGTGTATTTACAAGAGTGAGTATGCTTGTCCACCAAACCAAAAAAAATATTAGAAATTATATTTTATTTGCATAAAAAAAATATTTATCTTTATCAGATTATATAATATATAAAGAGTTGTTGAGAAAACCTCTTTTTTTTTTCAGTATTTGAATTGCATTTATAAGTTATGATCCACACTTTATAGTTTTAGTTTTTTTATGTCTTATAGTACTTTTATCATTTGTGATTTCCTATCATGATTTGTGAAATATTAGTTTGAACAGATCCAAATATTGTGTAATAATAATAATGTATGTTCGATAATATAAATATTAACTCTCAGTTCAAGAAAAATATGGAATTTTGAATATTTGTTAAGGGGACTTGAAATATAAAAATATAGTTCTTAGGATTTAAAATTGCAATGTTAAGGTGAATTTTGAACTCAGTAAATCATTGAGCTGACGATCCTCTAAGTCTTATAACGAGAAGATTCAAAATTTTATATATACACATTTTAAAAAATGTATCTTATATATACAATATATCTTTTGCCGAGAGGAATCAAATATGTAACGATCAAAAAAACCCGAAAAAAAGGCCACAATCATCCAAACAAGCTGCAACTATATATAATATATAACTTATATTATAACAGGGAAACCATAACATAAAATTAAA</genome_strand>
        <mrna_strand>ACAAATACCCTCAACAAATGGAGTTGTATGTGAAGAAGAACTTCAAGTTCCTTGTAAGGATGGCAATGTATTATATTGTGGCTCTATATGTTATGAAAAATATAGAGAAAATTATATGTCAACAGAGTGTGTGGAGAAATTTGCTGGTAACCCTATTTGTGTGTGTATTTACAAGAGTGAGTATGCTTGTCCACCAAACCAAAAAAAATATTAGAAATTATATTTTATTTGCATAAAAAAAATATTTATCTTTATCAGATTATATAATATATAAAGAGTTGTTGAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E747542" ref_strand="+" ref_description="SGN-E747542 [GI|7939616]">
      <seq>atccattttcatctgagacaaaatggtagaagctatgagcagaagaaaaacactgaattttccgttaatactaacggtgttaactatccactttgtgatcgtcgccggcgagtatttcaagccgttcaatgtcacctacgataaccgagctctcatcatcggcggtaaacgccgtatgcttatctccgccggaattcactaccctcgcgccactcctgagatgtggcccacattgatagctaggagcaaagaaggtggtgcagatgtcatcgagacttatacattttggaatggtcatgagccaaccaggggacagtacaattttgaaggaagatatgatattgtcaagttcgcaaagctagtcggatctcatggactgttcctctttattcgaataggtccttatgcctgtgcagaatggaacttcgggggattccccatatggcttcgtgatatacctggaatagaatttcgaacagataatgcaccattcaaggaggagatggagcgctatgttaaaaagatagttgatcttatgatatctgagtcgctcttttcgtggcaaggtggtcctatcattttgctgcagattgaaaatgaatatggaaatgttgaaagctcattcggtcccaaggggaagttatatatgaaatgggctgctgaaatggctgttggtcttggtgctggtgttccatgggtcatgtgcaggcaaactgatgctccagaatacatcatagatacttgtaatgcatactattgtgatgggttcacgccgaattccgagaagaaaccgaaaatttggactgagaattggaatggatggtttgcagattggggtgaaagacttccatatagaccttccgaggatattgcatttgcaattgctcgtttctttcaacgtgggggcagcttacagaactattatatgtattttggtgggacaaattttggccggactgctggtggcccaactcaaatcactagctatgattatgatgctccactggatgaatatggactactacgtcaacctaaatggggccatttgaaggatctgcatgctgctataaagctttgtgaaccagctcttgttgctgctgattcacctcagtatattaaactgggaccaaaacaggaggcacatgtctatcgtggaacatccaacaacattggccaatatatgtccttaaatgaaggcatatgcgcagcatttattgcaaatattgatgaacatgaatcagcaacagtgaaattttacggtcaagagttcactttacctccatggtcagtggtattctgccagattgcagaaatacagctttcaacacagctaaggtgggggcacaaacttcaatcaaaacagtgggctcagattctgtttcagttgggaataattctttgtttctacaagttatcactaaaagcaagctcggaaagtttttcacaatcttggatgacattgaaggagccacttggtgtgtggggtgacaagaatttcacttctaaaggaatactggagcatctgaatgtgacaaaagaccagtctgattacctgtggtatctgaccaggatatatatttctgatgatgacatctcattttgggaggaaaatgatgttagtccaacaattgatattgatagcatgcgtgattttgttcgcatttttgttaatgggcagcttgcaggtagtgtgaaaggcaaatggatcaaggtggttcaacctgttaagctggttcagggatacaacgacatactgctattatctgagacggtgggattgcagaattatggtgccttcttggagaaggatggggcaggttttaaaggtcagataaagcttacaggatgcaaaagcggggatatcaatctcacaacatctttatggacctaccaggtggggcttagaggcgaattcctggaagtatatgatgtcaatagtactgaaagtgcaggatggactgagtttcccactggtacaactccgtcagtcttttcgtggtacaagacaaagtttgatgccccaggcgggacagatccagttgctcttgattttagtagcatgggaaaaggtcaggcatgggttaatggccaccatgtaggaagatattggactttggttgcaccaaataatggatgtggaagaacttgtgattatcgtggtgcttaccactctgataaatgtaggacaaactgtggagagattactcaggcctggtaccatatacctagatcatggctaaagacattaaataatgtactagttatctttgaagaaacagataaaactccgtttgatatttccatttctacgcgttctactgaaaccatttgtgctcaagtatcggaaaagcactatccacctctacataagtggtctcattcggagtttgacagaaagttgtctctgatggataaaacaccagaaatgcacttgcagtgtgacgaaggacatacaatctcttctattgaatttgcaagctatggaagtccgaatggcagctgtcaaaagttctcacaaggaaaatgccatgctgcaaattccttgtctgttgtatctcaggcttgtataggaagaactagttgcagcattggcatttccaatggtgtatttggagatccatgtcgacacgttgtgaagagtttggctgttcaagcaaaatgctcaccaccaccagacctcagcacttcagcttcctcgtgaggagactctggtaacacgttaaccttttagaacgaaacgatcccttaaagtccactcgttcccctgcccccgagccctctgctacatttctcagatcgcatcgttacaatcaggcggagaaaacgtacatggacgattttacttgtaaatatttggttactgtatataaaatgaaaggaataatgttgcttatgcatatgagctgcaaattatatgacaaagtaacaaatgaaaatagaaaactcctgtctgtcaaagaattttaacaacaccatttattaaaagttagttaacatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="62896" stop="42855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62596" g_stop="62377" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62376" i_stop="61431" i_length="946">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61430" g_stop="61335" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="316" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61334" i_stop="61137" i_length="198">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61136" g_stop="61024" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="429" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61023" i_stop="60679" i_length="345">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60678" g_stop="60612" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="496" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60611" i_stop="59834" i_length="778">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59833" g_stop="59741" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="589" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59740" i_stop="59403" i_length="338">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59402" g_stop="59259" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="733" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="59258" i_stop="58497" i_length="762">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58496" g_stop="58408" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="822" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="58407" i_stop="52827" i_length="5581">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52826" g_stop="52721" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="928" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52720" i_stop="52113" i_length="608">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="52112" g_stop="52025" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="929" r_stop="1016" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="52024" i_stop="51683" i_length="342">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="51682" g_stop="51561" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1017" r_stop="1138" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="51560" i_stop="50367" i_length="1194">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="50366" g_stop="50169" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1139" r_stop="1335" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="50168" i_stop="49616" i_length="553">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="49615" g_stop="49383" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1336" r_stop="1569" r_length="234" r_score="0.987"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="49382" i_stop="48311" i_length="1072">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="48310" g_stop="48195" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1570" r_stop="1685" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="48194" i_stop="47732" i_length="463">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="47731" g_stop="47634" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1686" r_stop="1783" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="47633" i_stop="47247" i_length="387">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="47246" g_stop="47136" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1784" r_stop="1894" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="47135" i_stop="46261" i_length="875">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="46260" g_stop="46150" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1895" r_stop="2005" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="46149" i_stop="45004" i_length="1146">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="45003" g_stop="44795" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="2006" r_stop="2214" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="44794" i_stop="44645" i_length="150">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.867" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="44644" g_stop="44299" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="2215" r_stop="2560" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="44298" i_stop="43596" i_length="703">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="43595" g_stop="43155" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="2561" r_stop="3001" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E747542" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>3001</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62596" e_stop="62377"/>
          <exon e_start="61430" e_stop="61335"/>
          <exon e_start="61136" e_stop="61024"/>
          <exon e_start="60678" e_stop="60612"/>
          <exon e_start="59833" e_stop="59741"/>
          <exon e_start="59402" e_stop="59259"/>
          <exon e_start="58496" e_stop="58408"/>
          <exon e_start="52826" e_stop="52721"/>
          <exon e_start="52112" e_stop="52025"/>
          <exon e_start="51682" e_stop="51561"/>
          <exon e_start="50366" e_stop="50169"/>
          <exon e_start="49615" e_stop="49383"/>
          <exon e_start="48310" e_stop="48195"/>
          <exon e_start="47731" e_stop="47634"/>
          <exon e_start="47246" e_stop="47136"/>
          <exon e_start="46260" e_stop="46150"/>
          <exon e_start="45003" e_stop="44795"/>
          <exon e_start="44644" e_stop="44299"/>
          <exon e_start="43595" e_stop="43155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTTTCATCTGAGACAAAATGGTAGAAGCTATGAGCAGAAGAAAAACACTGAATTTTCCGTTAATACTAACGGTGTTAACTATCCACTTTGTGATCGTCGCCGGCGAGTATTTCAAGCCGTTCAATGTCACCTACGATAACCGAGCTCTCATCATCGGCGGTAAACGCCGTATGCTTATCTCCGCCGGAATTCACTACCCTCGCGCCACTCCTGAGGTTAGTGAAACTTCCAATTTTGCTAATTTCAGTCCATGAGATCAGTAAAAGTTGTTTTTTTTTCTCCTGTTAATTTACTGCTCTTTGACTGATGCATAAGCTAAATACTCCGTCTGTATAATTGTCAGTGTCGAGAGTAAAACTGTATGAACTTTGATCAATATTTTAAAAAGTTATTTTTTCATCATGATTGCAACTTTTAGTGTACGAACATCTAAATTTAAAATATTGAATTAATCTAATTCAGTTGAGCTCCGTAAAAGTGAATGGAGGACTGGAGGGAGTATGTAGTAATTTCTATAAGAGTGTTTATTTATGTTAAATTGTGGAGTAAATGATTTCCAAATGGAGAAAGAGGGTAATGATTTTTGGAACAGTCTAAAAAGAATTTCTTTTTGGAGGGAGTATATTGTATAAGAGTGACGAATTAGAATTCCATGGAATTGGATAAAGGATCAAGTAAAAGGTAGCTGCTTTGAGGATTGTTCTGGATTAACGGTGAATTGTGTAGCAAAATAAAAGAAGACAAAGAACATAGTTTTGTTACAGTGTTTGGCTGTGGAGCAGTTTCAAGGGAAACATTAATTTGTGAATTTGTGAAAAGCAACACTTCTCAATCAGTGAATTATATCTGAACTTCACATCCTTCGCTGAATAGAAAATCATTTTAATATCTCAATGGACATTAAACAAAGATATCAGCTTGTTAGAGTTATTGCATTTCTTGCAACAGTTCTTTCATGCAATTTAAAGAATTAAACTGCTAGTTTGATGTGCCATAAATCTCTGAAATTCAAAATCAAATAGTGACGTTATGCTAATGTAACTTATACATCTTGTTTTTCTCATGTTCTCTGGATGAACATAGTGTATGAACTTCCACTACACCCTCATGTTACAAATTATTCTTAGTTTTTATAAGCCTTGTGCATATCACATGTACCAGATGTGGCCCACATTGATAGCTAGGAGCAAAGAAGGTGGTGCAGATGTCATCGAGACTTATACATTTTGGAATGGTCATGAGCCAACCAGGGGACAGGTACTCATTTCTTAAAAACCTGCATTTTTGTGTTTGTTGCACTGAAGGTAATGCGATCTGTATTCTTGTAGAGTTATAACATTTAAACGAGTCGGTTTTGTTCTTCAATTGACTTCTTTTTTTAATATTTCCTACTATTTAATTTCCGTAACCTTTACCTTTTCTGAACTGCTTCTCTTTTGATGCTTCTCTTTTCAGTACAATTTTGAAGGAAGATATGATATTGTCAAGTTTGCAAAGCTAGTCGGATCTCATGGACTGTTCCTCTTTATTCGAATAGGTCCTTATGCCTGTGCAGAATGGAACTTCGGGTTACGTTCTGTTTCCAATATTTCCCTGCTCAGTTTTAACTTTATCATTAGTTCATGTAAAATGTGTTGTCATGCTTCAAGATCTAGTCTATTTTTTCAATAAAGCAAAAGGAAATGCATTACTTTCATTCTCACAAGGTGATAAGCAACAACATAGAAGGGCGGTATCTAGAAGAGAATCTGTAGTAATTCAGTAGCTGACAAGTTAGCACCGAGAAATATTTTAGAAAAAAAATAAAATAGAGATATCAACAACAGAATATAGCAGAAGGGCGTTAACACATTTGTGTCACCACTGAGAGCTTCTCTATTGATCTCACTTGGTGATTCCTGTCTGTATTGCAGGGGATTCCCCATATGGCTTCGTGATATACCTGGAATAGAATTTCGAACAGATAATGCACCATTCAAGGTATTATAATATAGCAGGGGAGCAGTAATTTTTCTGTGGAATTGTATGAGGCCTTTTTGAGGTGTCCTTGGAGTGTGACCTTCTAAATTTTGAAGATAACTTGTTTGTTTGGCCATGTTTATTTTTTGTTGAACCTGATTTGTGGCCTCATGGCTTCTGCACATATTATAGGGTCCAATTAATTCACTGAAACTGAACCAATTACTTGTCACATTGTCAATTCTAAATTCAATTAACCGTATAGATATATTAGATACATTGTTAGGCATAATACTCAGGGTATGTCCTAGTGGTCAATAAAGTGGGAGGAAAACCAAATGACAACATCTCTATTGACTGCTTTGTCAGCTTTATGTTATTGTCCAACAATAAGCCTCTGCCTTTCGTTTATTTGTCTTCACACATGCATTTCAAGATTAGTTCCGTCCTTCTGTTCCTCACCCCCTCAAGATTTTTTCGCTGGAGCAAATAGCTTGGCAAATTTTGTCAACCTGTTTCTCTATTGGAAGATTAGATTCTTGTAGTTTTTGTTCTTTGGTTCTCAAATAAAGCATCTATACCATGCATTTGATGGCAGGCATTCCTTGTTTATAGTAATTTTGTTTCTGTTTAGCTAATATTCATTCGGAAATGTGGTGTAGTTGGTTGACTGATTGAATCAGCAAAAACTAAGTTGTCTTTCCAATACTTTGTTGGTTAAATTGCAGTTGTTGTAGTTTAAGAGCATTAATTGGCTGCTGGAAGATTAAAATTTGACAAACTGAAACACTTTTCCCAGGAGGAGATGGAGCGCTATGTTAAAAAGATAGTTGATCTTATGATATCTGAGTCGCTCTTTTCGTGGCAAGGTGGTCCTATCATTTTGCTGCAGGTTATGAAATTTCTTATCCTGAATCACTGATTAGAATATCAGTATTACTGTAAGTCTGATAACTGCACTTTATTAGTTAGACAAGTAGGAATTTTTTGGTCAAGACTGCTTGAAATAATTGACATGAATAATGCACCTTACAACTGAATCTGAGTAATTTCCTCTTGAAATGATTAATGGATGTCCAGTTTTAGAGACATTATCTGCAGACACTGATACATTTGGCACTTTCATCTATCTCCTTCCCTTTCCCTTTCCCTTTGCATATGTCCTTGCATGCTTCTGCACCTAGGTTTAAACTTGAGTTGTGTCTCTTTCTGACGCTAAACTTTTGTCAGATTGAAAATGAATATGGAAATGTTGAAAGCTCATTCGGTCCCAAGGGGAAGTTATATATGAAATGGGCTGCTGAAATGGCTGTTGGTCTTGGTGCTGGTGTTCCATGGGTCATGTGCAGGCAAACTGATGCTCCAGAATACATCGTAATGCACTTAATTCCCTGATTTTCTCTAGTTGTAGCTAGTTGATCTATTTAGTCTAATATTACAACAACTACACCAGTATAATCCCACAAGCTATGCTGCTCGAACTCTTTTTAAAATGTTGACGAGTGCGTGTCGGATCTTCCAAAAACAGTGTATTTTTTACTGACACCTGTGCAGCAATATTCTTGGAGAGTCCGAGCATCTTAGCCCACAAGAAGAGTTTGGGGAGGGAAGGATGTACCCAGACCTTACCTTTGTGGGGGTAGAGAGGTTGTTTGCAATAGACCCTCGTCTATTTAATCTCTAATAGTTTTGATAAAAATATTCATTAGATGATATATTTTTAGCAATTCATTTCATTGAACGAGTTGCATAAAAACTAGTATTTTTAAGTAGTTTTATGAGAACATGCACATATTTCTTGAGTTTCTTTTGTAAAAGATAAGCCGGTGTAGAAACTGATCAATTTGAACCTTACTTTAAAATTTAAACAAATTTAACTCTTTATCATATAGAACTACTGCAGTCAATTGAATTTTCAAGTTAACCTAACACATGAATTCTGGAAAACTGATCTGAGTTGAAGAAGCCCTGGTTTCTTAAACCTTTTTTTGGATTAAATTTATAATTCGAAAGCAGCAGTGAGTTCTCTCTTAATTATTTCTCTCTCTTGTGTTATTATAAGTCCTCCTTTTCAGGGCCAGGGTATTCTATCTTTTCTTTATCTTGTTATGTTAAAGAATTTTTTATTTTTAACAGATAGATACTTGTAATGCATACTATTGTGATGGGTTCACGCCGAATTCCGAGAAGAAACCGAAAATTTGGACTGAGAATTGGAATGGATGGTATGATAATTGTTTCTTGTTTGTTAGACCTTTCTTGGTCATGTCTTTGAATTCTGAACCAGTATATGCATGATTCCAGGAAACCTTAGGTTCTTGTGGTGTTATGATTGTAAGATCTCTAACATGTGAGTTGACTTCTCTATAACTCATGAACCAAAGAGCAACGTATTTTGCTTGCATAAAGTACCTATTTAGAAAAAGTTTTTCTTGGCAGAATCCGACCCTTTTTTTTTTTTTTTAAAAGGGAAAAGTTTTTAAACCCCCCTTTTTACCCTTTTCCCCAAAAAAGAAAACCCCCCCTAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCACAACGGGGGGGGGGGGAAGTTTATTTTATTAAAAAAAAAAGGGGGGGGGGGGGGGAAAAAAAGGGGGGGTTGGGGTTTTTTTGGGGGGGGGGGGGGGGTTTTCCCCCGGGGGGGCCGTTGGGGGGGGGAAAAAAAAAGGGGGGTTCCCCCCAAAAAAACATTGAAGAAAGACTAAATTTCCCCCGGTTTTTTTTTTGGGGGGGGGGGGGGGGGGGTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAACCCCCCCCTTTTTTTCCCCCCCAGTGTTGGTGGGTGGGAATTTTTTTAAAAATTGGGGGGGGGGGGGGGGGGTTTTCCCAAAAAAAAGGTTTTTTTTTTTTGAACCCCGGGGGGCAAAATTTTTTGGGGGGTGGGGGGTTTTTGGCCCCCAAAAGGGTTTTGGGGGGGGAGGGGGGTCCCCCCCCCCTCCCCCTTGGGGGGGGGGGGGGGGGGGTTGCAAAAAACCCCCTCTTTTTTTATTTTTTAAAGTTTTGTTAAAAAAATTCTTTTGGGGGTTTTTTTTTTGCAAATCTTTTTTTTGGAGGGGGGGGCAAAAAAAAAGTTTTTTTTAAAGGTTTTTTGGGAAAACCCCCCAATTTTTTGGGGTTTTTTTTTAAAAAAAAAACCGGGGGGGAAAAAGTTAAATTTTACCCCTTTTTTAAAAATTAAAAAAAATTAATTTTTTTTTTTTAAAAAAAAAGGCGGGCAAAGGAAATTTTAAATTAACCCAAACCCCAAATTTTGGGAAAAAGTTTTGGGGGGGGGAGGCCCCGGTTTTTTTAACCCTTTTTTGGGGTAAAATTTTAATTTGAAAGGGGCGGGGGGGTTTTTTTTAAAATTTTTTTTTTTTTGGGGTTTTTAAAATCCCCCCTTTTGGGGGCCGGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAATTTTTTTTTTTTAAAAAAGGAAAATTTTAAAGCCAATTTTTTGGGGGGGGTCCCCCGGAATTTTGGGGGGAAAACCAAAAATTTGGGGGGGAAATGGAAGGGGGGGGTTTTAAATTTTTTTTTTTTTTTTGGGCCCTTTTTGGGAAGTTTTTTAAATTTTTAACCCCGTTTTGGGGGGTTCCCGGAAACCCTTGGGTTTTTGGGGGGTTTGGATTTAAAATTTTTTAAAAGGGGGGGGGGTTTTTTTTAAAACCCGGAACCAAAAGGAAAAGTTTTTTTTTGGCAAAAAAACCCTTTTTTAAAAAAATTTTTTTTGGGGGAATCCCCCCCCTTTTTTTTTTTTTGAAAATGGTAACATTGTATACATCAACATTTATACCTTATCTGCAGAGAAGGAAAGCCACCGCTAGAAATAAAGAAAATCTTGATTAATCTCACAAGGTTTCTACTAAATTGTACAAAGGTCAGATTCTCAGCAGAATCTGACCTTTGTGCTTGACTTTCTATTCTTCCAGATATCCTCTGTTAGGAAAGCTTAGAATAATGGAAAGTCTACATGAGAGGAAAGTTTGTTCCTGTGAGTTTTCCCTCTCATATTTTAGGGCTTCATTTTATCTCTCTCATATATAATATTTTAAGTCCTGAAGCTAGTGTAAATATATGAACATCACTTCTTAACTGAAGGAGAATAATATCAAGGAAAAAATGTTAGTTAAGTTAGAATAGGATTTAGAACTTCGTATGAAATGAACAAGTTTAGAACAATAAATTCAGTGAAGTATCAACTCTCGATTTGTTATGTTTCTAGCTATGTGTTGAAATCCATTCTTCAGGGAAAAGTTTGGTCAGTTGATCATTTAGTTAAGTTAGTATTATTAGTTCTTCAGTGAGGGTGTAAAGCTTGATGGACATTGCATACTGAAATCTAACTCAAGAACTATGAACCAGGAAAATGTGGTATATTTGAGCTCATATCCCTTCACTATGCTCTTCTTTATTTTTTATGCCTCCCTCTGATGTATACAACTCAAAAAGGAATGCAGGAACTCTTAGCTATGTTTTGGATTAAGTTGAGGAGTCAATAACATACAGATGAAGGAAAAAGAGACAATCTTATTTCTTTTCTTTACTGCAGGTTTGCAGATTGGGGTGAAAGACTTCCATATAGACCTTCCGAGGATATTGCATTTGCAATTGCTCGTTTCTTTCAACGTGGGGGCAGCTTACAGAACTATTATATGGTATTAGATACCTCTGATGCTCTTTAAATTTTCTTTTGCAGTCTGGTACAGATAAGGCATTTCCCTAATATATTTAACTCTCTCCTATTCCAGCTGACCTTACTTGTAATTATTTTAAAAGTTCTCTTGTCAACCGATAGTCAAGATTACCCAGTTCCACATGATTATCTCTTTTCTTGATTAATAGACTCGTTCTATATCCAGTATTTGTTTTTTGAAGAGTTTAAACAAACATTTTATGTGTGGCTAAATATTGATTACCAGTTTATGCAAACTAGAGAAGTTTGAAGTTACTCATTACTACTGGGTAAATGGAGAAATGATGACTTTTTTCCACGCGTTTGTTTGATGGTAAGATGATAGTCTAAATAAGAAGAGACCAACCTTTCTAGTCTAATGATAGCTTGAATAAGAAGAAACCATTTCCTTTCAACTTCCCCACACTTTTGCATGACTCATAGTTTCTTGCCGGAAACTGTGTTACCACTACCAGAGTAATTCAACACAAAAAAGAGAGGCTGGAAACTTGGATTTCTGTCACTTTCCTCTTCCTTTCCAGGCAGAAAATAGTTTCCTTGCTGACTGGCTGTTTCATCTTGTAATACCAGTATTTTGGTGGGACAAATTTTGGCCGGACTGCTGGTGGCCCAACTCAAATCACTAGCTATGATTATGATGCTCCACTGGATGAATATGGTAACTTTTCAATTTTATGTACTCTTCTATAAAAACAATACTGTCAAGATAAAATTTGATAGCCAAGTGTACATTGATATTAACCTCTTTTTTCACAAGTATTCATTAAATAGACTGCAATAACTACTTCGATAATTATTTTACTTCATGAAAAAGGTCTATTTTAAGCAGTCACTGAGGAATATTGAAGTGTTATTTTAGGATCATCCGTATAGTTAAAATATTTCAAGTGTCAAGTCCTTTAAAAAGATATTGTCCCACTTATGTCTATATATTAGTGTCTTATAATCACCAAACAATCAATATTTTCTCTCTTGTTCTCACGGTTACTATATTGTATAGGACTACTACGTCAACCTAAATGGGGCCATTTGAAGGATCTGCATGCTGCTATAAAGCTTTGTGAACCAGCTCTTGTTGCTGCTGATTCACCTCAGTATATTAAACTGGGACCAAAACAGGAGGTCAGTTAGCTTGAGTTAACCCTGGTATTGCTGTAAATTCACATGTTATTAAATGTAAAATAAAATGTCAACTGTTGAATATATTGTGATGAATGTGTTTTAGCCAGACTACCTTTGCAGAGGTACTTATTACTTTTTGTGAATTATCGAAGGCGCATCATGTTTTTACTTTTCTTTTGGAACAGCTACAAAATGCCTTGAGATATCTCATAATTCCAACATTCCATCAGTTATTATTGTGATGCTTATGTCTTTGATAGAACATAGTTATTGTTATTCTTGCTTTTTGAGAATGTTGCAGTCATTTGTTGCTAACAGGACGAACAATATATCATCTATGTTTACAGATTACTTGCTGCACAAAATATTTGGCACCTACATTTATCATTCTTGTGCAGAAGAGAAGATAAGAATATTGCGAGCTATTTTTGGTCTAAACAAGAAATGGGGGGGATATAAACTTTTGTGGATTTTATAGGAAAACTTAAAGAACCATGACTTAGTGTTAATACTTTTTGCATTTCCCAGAAGGGTTTTTTAGCTGATCAGTCTCATCATTTTTGGGGCGATGAGCCTGTTTTGTGAATATAAAGTTACCTTTCTCTAAAAAAAAAAATATTGCGAGCTATTTACAACACCATATATAGCTGGAAAATAGGAGGAAAATGTCGCATTCAAATCAAGGAAATTTATCTGGTCAATGGATCAATCTAGTTGATTTGGTTTGTTAGTTTAGGAAAAAAGTCTTTTCTTTCAGATCAGGAAATTAATTACCGTGAACTAATGGCCTACCAAATCCAATTTTACAGAGTTTTTCTTTTTTTTTTTCTTCCAAATGACTAGGCCTTCTGCTGGGGGAAGTTTGTGAACTACGAATGAGACTTTGCATCCTTTGCTACTTGTGATGTTGTTACAGTGGACAGTTGGCAACATATGGCAATCCTACTCGGTTCTTAATATGATTGTGAAAGTTAAGGAAGGCTGAAAGGACTTTATCTGAAAAATAAAGGAAAGGCAGAAAGGAATAAAAGATGGACTTCGTTATTTTATGCAAGCATGAATCACTGCGCTTTTAGGATAATATTACTCTCTCCTGCTTACCTTAAATTGTTCTTGTAAATCATCATATATGTGGTACCTTCTCCGCTTAACCATATCATCACTTGGTATTTGATGCTTGTCATCTTACTTCAGGCACATGTCTATCGTGGAACATCCAACAACATTGGCCAATATATGTCCTTAAATGAAGGCATATGCGCAGCATTTATTGCAAATATTGATGAACATGAATCAGCAACAGTGAAATTTTACGGTCAAGAGTTCACTTTACCTCCATGGTCAGTGAGTATTCTGCCAGATTGCAGAAATACAGCTTTCAACACAGCTAAGGTTTGTTGATGTTCCCACAGTTGAAAGAGTATAAGTTAATTCAAAAGATTACTGTCAATGCTTGCATGTGTACTTGTTTCATTATTTTCTTTTGTTCCAAGCTCGTTATATTTTATTGATAATGCTATCATATATGTGATTTCCACAAACTGAGGCTGCAGTTATTGCCATTTCTGTGTAGATGATGGTATTCGGTAGATTACTAAGATTGATTTTTCATTGCAACTCAAGTTGTCTCCTATAACTTCTGAAAAAAATGGTTGAATAAAATGTTTATGACCATTTTGGCTTATAGTTCATCCGAAATTATGATTTGTCACCATAAGATCTGGCGATGCATTGTAAATTTAACTACAGTTTAGGTGTTCAGTTACTAGCACATGTTTGAAAGAGAAACATATCCTGGTTACTGAAGTTAAACTTTAGACACTTAGACTCTCTTTCAAGTATAACATAGTGACCTCATCACCGGAATGCTTCTAAAACTAAGTAGTACTTTGTGATTAATTTTAATAATGTGTTTGATTGTTTTCTCTTTGCATTCCTTAAATAGGTGGGGGCACAAACTTCAATCAAAACAGTGGGCTCAGATTCTGTTTCAGTTGGGAATAATTCTTTGTTTCTACAAGTAATCACTAAAAGCAAGCTC-GAAAGTTTTTCACAATCTTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAGGTATTTCAATTATAACTGAGGTTAGGTCAGACTAAACAGTGAGTAATACCTTAATTTGGAACCACTTGATAATGGGACTTCTCCAATTCCATATATAGCTTTAAAACCGCACCGTTTATACCACATTCTTAGATGGCATCTGTACTGGAATTTAAAGCGACTTTGAACATGAGAAGATACCCTCAGAAGCCAAAATCTTGTAAAATGTGATTGTGAGCAGTATTGAATGTTTCGACATAAGATGGCCAGTGGAACACTCTGCATGAATTAACGAGTTTGATGTTCATACACTACAGAGTATTGTACGCGACAACATTTTTGAAGAAAATGGGTACACTTACATGGCCACTCTGTCTGCTCTTTGCTAACTTAACATTAGACGTAAGACTAACTTAATAAGCTACAGACAGGAAACTTCTGGTTTAACCGAACTGTTCTCTTTCCCTGTATTGCCACTGTGCGTGCCTGTCTTTGTATATTTGTTTGTGTTTTTTTCCCTTTTTATCCCCTATACTAATATACTTTGGCTTCTGTATCACTGGAGAGATATGATACTTAACCTGTGGTCTGAGGATTTCAAATTGTAGGACTAAAAGGAATATTGGAATTTCAACTAAGGGAATAAGAACTTCGTTGAGAAAGAACGCCATTCTCTTTCTCAATGTTCTGTTGTCTCCCTTTCTCTTTGACTCATGTTTTCTTATACTTTAACAAGTGAATAACCACACAACACCTATACAAAAACACAGGAAGATTTTGAAGTTGAACTGTCTTATAACCCTTTATTCTTGGTGTAATCGTGTCCTCCCCAAAGAGGTGGAGGATATTACTCACTTTTTAGATAGTTTAGGAGGGTATAAATGATAAATCTTTTGGTTTTTGCTTACTGTATACTCCTGATGTAATTACTACTGAAATACACCAATGGTGTATTATTGTCTATAAAATGTTAACTTTCTCAATCAGAAAAAAAAAACACTGAAAGATTTGGTTACAAATAGATTCATGACATTTATCATTGGTTGCAAACTGAAATAGTGATGACTTGCTCTGCTATCTCTGATGAATGCAGGATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAGGTATTTGGTTAGGTTTCTTTTGTGCTATATTATTATGCATCTCTTTTCTTTGTGTTATAGCATTATCCAATTCTCCTGGTACTATCGAATTGTACTTCAGACGTTGAACTTTTCTTGGTCTGCATGAATATGATTTATTTATTTTTTGATAAAGGTAACAGTGTATGAATATGATTTTCAAATTTATGTTAATTTCCATCTCTGAGCATGGGGACAGTCTGATGGACTGTCGTAGAAAGATGTTCCCGTTTATGTTGGTTTCCATCTCTGAACATAATGGTCTGATGAATTGCCATAGAATGTCTGTCAAATAAAAATATAAAATCTCACTATTTTGCTTGTGTTTATAGTGCATGAGGCTGAAACGTTAGTCAAGCTAGCGTAGTCGTTTATTTCCTTTTTTCTCCTCATATCTCTGATTCGTCACCCATTTTACCCTATGACATGTCTGTTGTAAGTGTAGGTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAGGTAAAGATAGTTTAGAAGTAGAATTACTCAAATGACAGATTTGAATCATGGTGAAGTATTATCTTATCTGAAATTTGAAAGAAGTGATATTAATTTTTTTGGTGAAACGTGAAGTATTATCTTATCTTAAACTTGAAAGAGGTGATATTAATTTTTTGGTGAACCTGAAGTTCCCATTGTTCAACCTCCATATTTGAATCTCTAACCTTAATTTCTCTTTCTTATTTATTTCCTTACTTGAGTAAGCAGCGATGATGCATGTTTTACAGGCTAATTTCCATTTCACTTTATAGTTTTTCAAATGTTTAATATGACTCATAAAAGGCTCTCAAACTTCATCCCATGCTGACTTCAAAAGCTGAAAAGGACTTTTTGCCACATTTTCAGAATTATGGTGCCTTCTTGGAGAAGGATGGGGCAGGTTTTAAAGGTCAGATAAAGCTTACAGGATGCAAAAGCGGGGATATCAATCTCACAACATCTTTATGGACCTACCAGGTACCTCATTTTTTTCACCTTAAATGAATCTTGATGGTCACACGTGATAAAAGGATCAAACTTCTCAATTGTATTTGGTGTTAACAGATAATTACTCAGGTAAACTTGCAGTTTGTAATGAGTCCAAAGGTAGATATATTGGTGCAAATCAGAGTGTATAGATCCAATTTCTGTTATAGACATTGTAGGGTCCTTGTGAGATAATATAGGGCTTAGGTGGTTCCTCTCTAACCTTTTTTTTTTGGGGATTGAATCCACTTATGTGAACACTCCATTTTGGCTTCCGACACTTCGTGTTGATGATTTATAGACCATTAGTTACCTTGTCAAAAAAAAAAAAAAAAACCTGAGAAACTACTCTAGACCGACTAGACTGGAAAGACAAGCTGGTTTACTTCACTCGTTAGTGCTATATGAACAGTGTTAATGGTGCTGAGCAAATTGATGATAGAATCGTGGATAATACGCGGAAAAAGTCCCAATTAGTTTCTGTCCAAAAGCTTTTGGCTATGCATCTTTTCTCAGTGAATATCTGGTTGTCATATTTAAATAGATTGTGAATCTGGAATTACTTCTCATTTGTAGACCCATTGTGTTCCTTCAGTTAAGCTAAAATGCTTCCTATATGTATAGAAAATATAACCTTCAAAAAACAAGGCTTCTATATCCATCTGTTCTCTGCTTGTGAATTTACAAAATTTGATATAAGCCAGGCTATGCACACAGAATCAACTTGCAAAAAAAGTACCATTTCTTCTACATGGAATAAATAAAATTGATCTTAATGTGAACTTGAAGATGACTAAACTTGTTTAATGCCTTTTCATATACAATGGAAAAATAGGAAACCTGACTTCTAGTTATATGTTCAACAGGTGGGGCTTAGAGGCGAATTCCTGGAAGTATATGATGTCAATAGTACTGAAAGTGCAGGATGGACTGAGTTTCCCACTGGTACAACTCCGTCAGTCTTTTCGTGGTACAAGGTAAGTCGACAAAGATCAAATACCAGATTCAGCTGTCACTAACATAGGGGAGAACTTGCTAATTATTGGCAATATCATTTCCTATTATTAGTGTCACTCAGGTTATATATATATATATATATATATATGACATTGATTCTCTGACTATTGTATGTGCTTATGTCCTTTATTGCCTTCTTAAGCTATCATTTATTTGTGGGTGAAGCAAGTCACCACATTCGATACTACTAGAAGGACTCCTAGAAGAAATGTTCAGTATTGTTTGGTCAAGTTCTGTGATAGTATTTTAAGTTTTCAGCTACATTGTATATTAAGAATCTCTTATGATTTGACTTTTATTATCTAAGACATCCTTTCATTTCTCCATACCAAGTAAGAGTGATGTGAACTTTTTTGACCGTTTTCTTTCATGTAACGAGAAACTCGGAGTACAAAATGGAAAATTTTCAATGGGTCAAGGACCTTTCATTCTCACTTCAACCAATCAATTGACTATGCATGCCTCAGCTTCAAATTAACTGGAGCCAGCTATATGAATTTCTTTGAATCCACTGTGTTCTGTTGGGGCCCATTTCGTTGCAATACGTGATAATTTGTCTTGTAAAGAAAATTAGTAGTTCGTTGAAGATTCTCAAACTCTTCCAATCTTTACATGGATACAAATGTATAGCCAGAATAAAAGGACTTCCAATAAACATCGGTTCAAATGTAAGTGCGTGTAACAACTACCACTAAGCATTTTTTGGGATTAGTCAAGATGTATATAATGAGTACTAAGATTCAATCCAGATATGAATCCTTTACTTCCTATATGACGGAGGCAAAATCATTGATTGAAGAGGGGATCAAAGAAATATTCGCTGTTTGACTTCTTCTGTGCCTATTGATTGCTCCATAGCTAGATACTCCTATTTCTTATTCATAGATCGTAGAATAAGATGTTATAAGGTAAAAGGAAAATTCCTTCTCGAGAATAGGTTCCGAATAGCTTGTAGATTAGGAATTCTCTACAATCCTTTTCATTTCTTTGTTCCTATGCTACTGCAGAATTTCTTGGAACATGTGCTTTCTATGCTACATTTAATTTCGATTTTTGTTCGTTAGTTTTAGAGTGATATTAAGTGGTTTGTATCGTTGGTTGAGCAGACAAAGTTTGATGCCCCAGGCGGGACAGATCCAGTTGCTCTTGATTTTAGTAGCATGGGAAAAGGTCAGGCATGGGTTAATGGCCACCATGTAGGAAGATATTGGACTTTGGTTGCACCAAATAATGGATGTGGAAGAACTTGTGATTATCGTGGTGCTTACCACTCTGATAAATGTAGGACAAACTGTGGAGAGATTACTCAGGCCTGGTATGAACTTCTTTTACTTGCTGAAATTATAATTTACATTCTCGGGAATTTGGCGCTCATGATTGTAAGAGGCTACACCTGTGTAGGTGCAGTGAAATGGATCTAAGCTGGTACATTCTGTTGCTTATAAAGATACTTTTTTTTGACCAGGTACCATATACCTAGATCATGGCTAAAGACATTAAATAATGTACTAGTTATCTTTGAAGAAACAGATAAAACTCCGTTTGATATTTCCATTTCTACGCGTTCTACTGAAACCATTTGTGCTCAAGTATCGGAAAAGCACTATCCACCTCTACATAAGTGGTCTCATTCGGAGTTTGACAGAAAGTTGTCTCTGATGGATAAAACACCAGAAATGCACTTGCAGTGTGACGAAGGACATACAATCTCTTCTATTGAATTTGCAAGCTATGGAAGTCCGAATGGCAGCTGTCAAAAGTTCTCACAAGGAAAATGCCATGCTGCAAATTCCTTGTCTGTTGTATCTCAGGTATGTTCATTTGTTTCCTTTTTTCATTTCTTAAAATCGTTTCTATGTTCACCTCTCTTCGTTACAGTATGTTGACTGCAAGAATAGATAAATGTATCCCTTGCAGATACTAAGTTACTTCATGATTGATTTTTAATTAGTTTGACAAGTAGATCAACCTTTATAATTAAGAACTGCAAAGAGAATAGGGTTTCCTTCGTTTGATTAACACGTGATGATTTTTTAAATTAGTGATAGCTATATACCAGGTGGATGTACAGATGTTTCAATTACAAGAGACATGTCAGGCTAAACAATGCATGAAAACTTGACTGTTTTGATTGGGAGTTAAATCTTGATGTTCCTTTCTAATAGAGCAATATATTTACTGCTTGACTTCGAATTCACTGTTATATTTGTACAGCAGAGTAAAAATAAACCATAAAAAGAAATGAACCTTGATATCGAGTAGGATGGGGTCTGGATATAGAGTCTGATGCAGAAGGTGATCATGTCAATCTGTCAAACACTCAGATTGTCTTCAGGGGCGGATCACGTGAACTCTGTGGTTTTTGCCCTGACCATGTTTATGTATTAAGCAATCCATCAAATATCTATATTGTTTGACGATGAACCCAATTATTATTATAGCTTTCATCTGAGGTAGCTTCAAATTCTGGATTCACCTCTGAGTATCTTAATCAAACTTTTCACTATATTACAGGCTTGTATAGGAAGAACTAGTTGCAGCATTGGCATTTCCAATGGTGTATTTGGAGATCCATGTCGACACGTTGTGAAGAGTTTGGCTGTTCAAGCAAAATGCTCACCACCACCAGACCTCAGCACTTCAGCTTCCTCGTGAGGAGACTCTGGTAACACGTTAACCTTTTAGAACGAAACGATCCCTTAAAGTCCACTCGTTCCCCTGCCCCCGAGCCCTCTGCTACATTTCTCAGATCGCATCGTTACAATCAGGCGGAGAAAACGTACATGGACGATTTTACTTGTAAATATTTGGTTACTGTATATAAAATGAAAGGAATAATGTTGCTTATGCATATGAGCTGCAAATTATATGACAAAGTAACAAATGAAAATAGAAAACTCCTGTCTGTCAAAGAATTTTAACAACACCATTTATTAAAAGTTAGTTAACATGATT</genome_strand>
        <mrna_strand>ATCCATTTTCATCTGAGACAAAATGGTAGAAGCTATGAGCAGAAGAAAAACACTGAATTTTCCGTTAATACTAACGGTGTTAACTATCCACTTTGTGATCGTCGCCGGCGAGTATTTCAAGCCGTTCAATGTCACCTACGATAACCGAGCTCTCATCATCGGCGGTAAACGCCGTATGCTTATCTCCGCCGGAATTCACTACCCTCGCGCCACTCCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGCCCACATTGATAGCTAGGAGCAAAGAAGGTGGTGCAGATGTCATCGAGACTTATACATTTTGGAATGGTCATGAGCCAACCAGGGGACAG......................................................................................................................................................................................................TACAATTTTGAAGGAAGATATGATATTGTCAAGTTCGCAAAGCTAGTCGGATCTCATGGACTGTTCCTCTTTATTCGAATAGGTCCTTATGCCTGTGCAGAATGGAACTTCGG.........................................................................................................................................................................................................................................................................................................................................................GGGATTCCCCATATGGCTTCGTGATATACCTGGAATAGAATTTCGAACAGATAATGCACCATTCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGCGCTATGTTAAAAAGATAGTTGATCTTATGATATCTGAGTCGCTCTTTTCGTGGCAAGGTGGTCCTATCATTTTGCTGCAG..................................................................................................................................................................................................................................................................................................................................................ATTGAAAATGAATATGGAAATGTTGAAAGCTCATTCGGTCCCAAGGGGAAGTTATATATGAAATGGGCTGCTGAAATGGCTGTTGGTCTTGGTGCTGGTGTTCCATGGGTCATGTGCAGGCAAACTGATGCTCCAGAATACATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATACTTGTAATGCATACTATTGTGATGGGTTCACGCCGAATTCCGAGAAGAAACCGAAAATTTGGACTGAGAATTGGAATGGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCAGATTGGGGTGAAAGACTTCCATATAGACCTTCCGAGGATATTGCATTTGCAATTGCTCGTTTCTTTCAACGTGGGGGCAGCTTACAGAACTATTATATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGGTGGGACAAATTTTGGCCGGACTGCTGGTGGCCCAACTCAAATCACTAGCTATGATTATGATGCTCCACTGGATGAATATG......................................................................................................................................................................................................................................................................................................................................................GACTACTACGTCAACCTAAATGGGGCCATTTGAAGGATCTGCATGCTGCTATAAAGCTTTGTGAACCAGCTCTTGTTGCTGCTGATTCACCTCAGTATATTAAACTGGGACCAAAACAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATGTCTATCGTGGAACATCCAACAACATTGGCCAATATATGTCCTTAAATGAAGGCATATGCGCAGCATTTATTGCAAATATTGATGAACATGAATCAGCAACAGTGAAATTTTACGGTCAAGAGTTCACTTTACCTCCATGGTCAGTG-GTATTCTGCCAGATTGCAGAAATACAGCTTTCAACACAGCTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGGCACAAACTTCAATCAAAACAGTGGGCTCAGATTCTGTTTCAGTTGGGAATAATTCTTTGTTTCTACAAGTTATCACTAAAAGCAAGCTCGGAAAGTTTTTCACAATCTTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................AATTATGGTGCCTTCTTGGAGAAGGATGGGGCAGGTTTTAAAGGTCAGATAAAGCTTACAGGATGCAAAAGCGGGGATATCAATCTCACAACATCTTTATGGACCTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCTTAGAGGCGAATTCCTGGAAGTATATGATGTCAATAGTACTGAAAGTGCAGGATGGACTGAGTTTCCCACTGGTACAACTCCGTCAGTCTTTTCGTGGTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGTTTGATGCCCCAGGCGGGACAGATCCAGTTGCTCTTGATTTTAGTAGCATGGGAAAAGGTCAGGCATGGGTTAATGGCCACCATGTAGGAAGATATTGGACTTTGGTTGCACCAAATAATGGATGTGGAAGAACTTGTGATTATCGTGGTGCTTACCACTCTGATAAATGTAGGACAAACTGTGGAGAGATTACTCAGGCCTG......................................................................................................................................................GTACCATATACCTAGATCATGGCTAAAGACATTAAATAATGTACTAGTTATCTTTGAAGAAACAGATAAAACTCCGTTTGATATTTCCATTTCTACGCGTTCTACTGAAACCATTTGTGCTCAAGTATCGGAAAAGCACTATCCACCTCTACATAAGTGGTCTCATTCGGAGTTTGACAGAAAGTTGTCTCTGATGGATAAAACACCAGAAATGCACTTGCAGTGTGACGAAGGACATACAATCTCTTCTATTGAATTTGCAAGCTATGGAAGTCCGAATGGCAGCTGTCAAAAGTTCTCACAAGGAAAATGCCATGCTGCAAATTCCTTGTCTGTTGTATCTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGTATAGGAAGAACTAGTTGCAGCATTGGCATTTCCAATGGTGTATTTGGAGATCCATGTCGACACGTTGTGAAGAGTTTGGCTGTTCAAGCAAAATGCTCACCACCACCAGACCTCAGCACTTCAGCTTCCTCGTGAGGAGACTCTGGTAACACGTTAACCTTTTAGAACGAAACGATCCCTTAAAGTCCACTCGTTCCCCTGCCCCCGAGCCCTCTGCTACATTTCTCAGATCGCATCGTTACAATCAGGCGGAGAAAACGTACATGGACGATTTTACTTGTAAATATTTGGTTACTGTATATAAAATGAAAGGAATAATGTTGCTTATGCATATGAGCTGCAAATTATATGACAAAGTAACAAATGAAAATAGAAAACTCCTGTCTGTCAAAGAATTTTAACAACACCATTTATTAAAAGTTAGTTAACATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E372949" ref_strand="+" ref_description="SGN-E372949 [TUS-32-N19]">
      <seq>ttggatgacattgaaggagccacttggtgtgtggggtgacaagaatttcacttctaaaggaatactggagcatctgaatgtgacaaaagaccagtctgattacctgtggtatctgaccaggatatatatttctgatgatgacatctcattttgggaggaaaatgatgttagtccaacaattgatattgatagcatgcgtgattttgttcgcatttttgttaatgggcagcttgcaggtagtgtgaaaggcaaatggatcaaggtggttcaacctgttaagctggttcagggatacaacgacatactgctattatctgagacggtgggattgcagaattatggtgccttcttggagaaggatggggcaggttttaaaggtcagataaagcttacaggatgcaaaagcggggatatcaatctcacaacatctttatggacctaccaggtggggcttagaggcgaattcctggaagtatatgatgtcaatagtactgaaagtgcaggatggactgagtttcccactggtacaactccgtcagtcttttcgtggtacaagacaaagtttgatgccccaggcgggacagatccagttgctcttgattttagtagcatgggaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="49802" stop="44639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49502" g_stop="49383" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49382" i_stop="48311" i_length="1072">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48310" g_stop="48195" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="236" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48194" i_stop="47732" i_length="463">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47731" g_stop="47634" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="334" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47633" i_stop="47247" i_length="387">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47246" g_stop="47136" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="445" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47135" i_stop="46261" i_length="875">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46260" g_stop="46150" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="556" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46149" i_stop="45004" i_length="1146">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45003" g_stop="44939" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="621" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E372949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49502" e_stop="49383"/>
          <exon e_start="48310" e_stop="48195"/>
          <exon e_start="47731" e_stop="47634"/>
          <exon e_start="47246" e_stop="47136"/>
          <exon e_start="46260" e_stop="46150"/>
          <exon e_start="45003" e_stop="44939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAGGTATTTCAATTATAACTGAGGTTAGGTCAGACTAAACAGTGAGTAATACCTTAATTTGGAACCACTTGATAATGGGACTTCTCCAATTCCATATATAGCTTTAAAACCGCACCGTTTATACCACATTCTTAGATGGCATCTGTACTGGAATTTAAAGCGACTTTGAACATGAGAAGATACCCTCAGAAGCCAAAATCTTGTAAAATGTGATTGTGAGCAGTATTGAATGTTTCGACATAAGATGGCCAGTGGAACACTCTGCATGAATTAACGAGTTTGATGTTCATACACTACAGAGTATTGTACGCGACAACATTTTTGAAGAAAATGGGTACACTTACATGGCCACTCTGTCTGCTCTTTGCTAACTTAACATTAGACGTAAGACTAACTTAATAAGCTACAGACAGGAAACTTCTGGTTTAACCGAACTGTTCTCTTTCCCTGTATTGCCACTGTGCGTGCCTGTCTTTGTATATTTGTTTGTGTTTTTTTCCCTTTTTATCCCCTATACTAATATACTTTGGCTTCTGTATCACTGGAGAGATATGATACTTAACCTGTGGTCTGAGGATTTCAAATTGTAGGACTAAAAGGAATATTGGAATTTCAACTAAGGGAATAAGAACTTCGTTGAGAAAGAACGCCATTCTCTTTCTCAATGTTCTGTTGTCTCCCTTTCTCTTTGACTCATGTTTTCTTATACTTTAACAAGTGAATAACCACACAACACCTATACAAAAACACAGGAAGATTTTGAAGTTGAACTGTCTTATAACCCTTTATTCTTGGTGTAATCGTGTCCTCCCCAAAGAGGTGGAGGATATTACTCACTTTTTAGATAGTTTAGGAGGGTATAAATGATAAATCTTTTGGTTTTTGCTTACTGTATACTCCTGATGTAATTACTACTGAAATACACCAATGGTGTATTATTGTCTATAAAATGTTAACTTTCTCAATCAGAAAAAAAAAACACTGAAAGATTTGGTTACAAATAGATTCATGACATTTATCATTGGTTGCAAACTGAAATAGTGATGACTTGCTCTGCTATCTCTGATGAATGCAGGATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAGGTATTTGGTTAGGTTTCTTTTGTGCTATATTATTATGCATCTCTTTTCTTTGTGTTATAGCATTATCCAATTCTCCTGGTACTATCGAATTGTACTTCAGACGTTGAACTTTTCTTGGTCTGCATGAATATGATTTATTTATTTTTTGATAAAGGTAACAGTGTATGAATATGATTTTCAAATTTATGTTAATTTCCATCTCTGAGCATGGGGACAGTCTGATGGACTGTCGTAGAAAGATGTTCCCGTTTATGTTGGTTTCCATCTCTGAACATAATGGTCTGATGAATTGCCATAGAATGTCTGTCAAATAAAAATATAAAATCTCACTATTTTGCTTGTGTTTATAGTGCATGAGGCTGAAACGTTAGTCAAGCTAGCGTAGTCGTTTATTTCCTTTTTTCTCCTCATATCTCTGATTCGTCACCCATTTTACCCTATGACATGTCTGTTGTAAGTGTAGGTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAGGTAAAGATAGTTTAGAAGTAGAATTACTCAAATGACAGATTTGAATCATGGTGAAGTATTATCTTATCTGAAATTTGAAAGAAGTGATATTAATTTTTTTGGTGAAACGTGAAGTATTATCTTATCTTAAACTTGAAAGAGGTGATATTAATTTTTTGGTGAACCTGAAGTTCCCATTGTTCAACCTCCATATTTGAATCTCTAACCTTAATTTCTCTTTCTTATTTATTTCCTTACTTGAGTAAGCAGCGATGATGCATGTTTTACAGGCTAATTTCCATTTCACTTTATAGTTTTTCAAATGTTTAATATGACTCATAAAAGGCTCTCAAACTTCATCCCATGCTGACTTCAAAAGCTGAAAAGGACTTTTTGCCACATTTTCAGAATTATGGTGCCTTCTTGGAGAAGGATGGGGCAGGTTTTAAAGGTCAGATAAAGCTTACAGGATGCAAAAGCGGGGATATCAATCTCACAACATCTTTATGGACCTACCAGGTACCTCATTTTTTTCACCTTAAATGAATCTTGATGGTCACACGTGATAAAAGGATCAAACTTCTCAATTGTATTTGGTGTTAACAGATAATTACTCAGGTAAACTTGCAGTTTGTAATGAGTCCAAAGGTAGATATATTGGTGCAAATCAGAGTGTATAGATCCAATTTCTGTTATAGACATTGTAGGGTCCTTGTGAGATAATATAGGGCTTAGGTGGTTCCTCTCTAACCTTTTTTTTTTGGGGATTGAATCCACTTATGTGAACACTCCATTTTGGCTTCCGACACTTCGTGTTGATGATTTATAGACCATTAGTTACCTTGTCAAAAAAAAAAAAAAAAACCTGAGAAACTACTCTAGACCGACTAGACTGGAAAGACAAGCTGGTTTACTTCACTCGTTAGTGCTATATGAACAGTGTTAATGGTGCTGAGCAAATTGATGATAGAATCGTGGATAATACGCGGAAAAAGTCCCAATTAGTTTCTGTCCAAAAGCTTTTGGCTATGCATCTTTTCTCAGTGAATATCTGGTTGTCATATTTAAATAGATTGTGAATCTGGAATTACTTCTCATTTGTAGACCCATTGTGTTCCTTCAGTTAAGCTAAAATGCTTCCTATATGTATAGAAAATATAACCTTCAAAAAACAAGGCTTCTATATCCATCTGTTCTCTGCTTGTGAATTTACAAAATTTGATATAAGCCAGGCTATGCACACAGAATCAACTTGCAAAAAAAGTACCATTTCTTCTACATGGAATAAATAAAATTGATCTTAATGTGAACTTGAAGATGACTAAACTTGTTTAATGCCTTTTCATATACAATGGAAAAATAGGAAACCTGACTTCTAGTTATATGTTCAACAGGTGGGGCTTAGAGGCGAATTCCTGGAAGTATATGATGTCAATAGTACTGAAAGTGCAGGATGGACTGAGTTTCCCACTGGTACAACTCCGTCAGTCTTTTCGTGGTACAAGGTAAGTCGACAAAGATCAAATACCAGATTCAGCTGTCACTAACATAGGGGAGAACTTGCTAATTATTGGCAATATCATTTCCTATTATTAGTGTCACTCAGGTTATATATATATATATATATATATATGACATTGATTCTCTGACTATTGTATGTGCTTATGTCCTTTATTGCCTTCTTAAGCTATCATTTATTTGTGGGTGAAGCAAGTCACCACATTCGATACTACTAGAAGGACTCCTAGAAGAAATGTTCAGTATTGTTTGGTCAAGTTCTGTGATAGTATTTTAAGTTTTCAGCTACATTGTATATTAAGAATCTCTTATGATTTGACTTTTATTATCTAAGACATCCTTTCATTTCTCCATACCAAGTAAGAGTGATGTGAACTTTTTTGACCGTTTTCTTTCATGTAACGAGAAACTCGGAGTACAAAATGGAAAATTTTCAATGGGTCAAGGACCTTTCATTCTCACTTCAACCAATCAATTGACTATGCATGCCTCAGCTTCAAATTAACTGGAGCCAGCTATATGAATTTCTTTGAATCCACTGTGTTCTGTTGGGGCCCATTTCGTTGCAATACGTGATAATTTGTCTTGTAAAGAAAATTAGTAGTTCGTTGAAGATTCTCAAACTCTTCCAATCTTTACATGGATACAAATGTATAGCCAGAATAAAAGGACTTCCAATAAACATCGGTTCAAATGTAAGTGCGTGTAACAACTACCACTAAGCATTTTTTGGGATTAGTCAAGATGTATATAATGAGTACTAAGATTCAATCCAGATATGAATCCTTTACTTCCTATATGACGGAGGCAAAATCATTGATTGAAGAGGGGATCAAAGAAATATTCGCTGTTTGACTTCTTCTGTGCCTATTGATTGCTCCATAGCTAGATACTCCTATTTCTTATTCATAGATCGTAGAATAAGATGTTATAAGGTAAAAGGAAAATTCCTTCTCGAGAATAGGTTCCGAATAGCTTGTAGATTAGGAATTCTCTACAATCCTTTTCATTTCTTTGTTCCTATGCTACTGCAGAATTTCTTGGAACATGTGCTTTCTATGCTACATTTAATTTCGATTTTTGTTCGTTAGTTTTAGAGTGATATTAAGTGGTTTGTATCGTTGGTTGAGCAGACAAAGTTTGATGCCCCAGGCGGGACAGATCCAGTTGCTCTTGATTTTAGTAGCATGGGAAAAGG</genome_strand>
        <mrna_strand>TTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................AATTATGGTGCCTTCTTGGAGAAGGATGGGGCAGGTTTTAAAGGTCAGATAAAGCTTACAGGATGCAAAAGCGGGGATATCAATCTCACAACATCTTTATGGACCTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCTTAGAGGCGAATTCCTGGAAGTATATGATGTCAATAGTACTGAAAGTGCAGGATGGACTGAGTTTCCCACTGGTACAACTCCGTCAGTCTTTTCGTGGTACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGTTTGATGCCCCAGGCGGGACAGATCCAGTTGCTCTTGATTTTAGTAGCATGGGAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E260529" ref_strand="+" ref_description="SGN-E260529 [cLEG-54-K2]">
      <seq>gttgggaataattctttgtttctacaagtaatcactaaaagcaagctcgaaagtttttcacaatcttggatgacattgaaggagccacttggtgtgtggggtgacaagaatttcacttctaaaggaatactggagcatctgaatgtgacaaaagaccagtctgattacctgtggtatctgaccaggatatatatttctgatgatgacatctcattttgggaggaaaatgatgttagtccaacaattgatattgatagcatgcgtgattttgttcgcatttttgttaatgggcagcttgcaggtagtgtgaaaggcaaatggatcaaggtggttcaacctgttaagctggttcagggatacaacgacatactgctattatctgagacggtgggattgcagaattatggtgccttcttggagaaggatggggcaggttttagaggtcagataaagcttacaggatgcaaaagcggggatatcaatctcacaacatctttatggacctaccaggtggggcttagaggcgaattcctggaagtatatgatggcaatagtactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="49867" stop="45909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49567" g_stop="49383" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49382" i_stop="48311" i_length="1072">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48310" g_stop="48195" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="301" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48194" i_stop="47732" i_length="463">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47731" g_stop="47634" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="399" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47633" i_stop="47247" i_length="387">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47246" g_stop="47136" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="510" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47135" i_stop="46261" i_length="875">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46260" g_stop="46209" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="562" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E260529" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49567" e_stop="49383"/>
          <exon e_start="48310" e_stop="48195"/>
          <exon e_start="47731" e_stop="47634"/>
          <exon e_start="47246" e_stop="47136"/>
          <exon e_start="46260" e_stop="46209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGGAATAATTCTTTGTTTCTACAAGTAATCACTAAAAGCAAGCTCGAAAGTTTTTCACAATCTTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAGGTATTTCAATTATAACTGAGGTTAGGTCAGACTAAACAGTGAGTAATACCTTAATTTGGAACCACTTGATAATGGGACTTCTCCAATTCCATATATAGCTTTAAAACCGCACCGTTTATACCACATTCTTAGATGGCATCTGTACTGGAATTTAAAGCGACTTTGAACATGAGAAGATACCCTCAGAAGCCAAAATCTTGTAAAATGTGATTGTGAGCAGTATTGAATGTTTCGACATAAGATGGCCAGTGGAACACTCTGCATGAATTAACGAGTTTGATGTTCATACACTACAGAGTATTGTACGCGACAACATTTTTGAAGAAAATGGGTACACTTACATGGCCACTCTGTCTGCTCTTTGCTAACTTAACATTAGACGTAAGACTAACTTAATAAGCTACAGACAGGAAACTTCTGGTTTAACCGAACTGTTCTCTTTCCCTGTATTGCCACTGTGCGTGCCTGTCTTTGTATATTTGTTTGTGTTTTTTTCCCTTTTTATCCCCTATACTAATATACTTTGGCTTCTGTATCACTGGAGAGATATGATACTTAACCTGTGGTCTGAGGATTTCAAATTGTAGGACTAAAAGGAATATTGGAATTTCAACTAAGGGAATAAGAACTTCGTTGAGAAAGAACGCCATTCTCTTTCTCAATGTTCTGTTGTCTCCCTTTCTCTTTGACTCATGTTTTCTTATACTTTAACAAGTGAATAACCACACAACACCTATACAAAAACACAGGAAGATTTTGAAGTTGAACTGTCTTATAACCCTTTATTCTTGGTGTAATCGTGTCCTCCCCAAAGAGGTGGAGGATATTACTCACTTTTTAGATAGTTTAGGAGGGTATAAATGATAAATCTTTTGGTTTTTGCTTACTGTATACTCCTGATGTAATTACTACTGAAATACACCAATGGTGTATTATTGTCTATAAAATGTTAACTTTCTCAATCAGAAAAAAAAAACACTGAAAGATTTGGTTACAAATAGATTCATGACATTTATCATTGGTTGCAAACTGAAATAGTGATGACTTGCTCTGCTATCTCTGATGAATGCAGGATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAGGTATTTGGTTAGGTTTCTTTTGTGCTATATTATTATGCATCTCTTTTCTTTGTGTTATAGCATTATCCAATTCTCCTGGTACTATCGAATTGTACTTCAGACGTTGAACTTTTCTTGGTCTGCATGAATATGATTTATTTATTTTTTGATAAAGGTAACAGTGTATGAATATGATTTTCAAATTTATGTTAATTTCCATCTCTGAGCATGGGGACAGTCTGATGGACTGTCGTAGAAAGATGTTCCCGTTTATGTTGGTTTCCATCTCTGAACATAATGGTCTGATGAATTGCCATAGAATGTCTGTCAAATAAAAATATAAAATCTCACTATTTTGCTTGTGTTTATAGTGCATGAGGCTGAAACGTTAGTCAAGCTAGCGTAGTCGTTTATTTCCTTTTTTCTCCTCATATCTCTGATTCGTCACCCATTTTACCCTATGACATGTCTGTTGTAAGTGTAGGTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAGGTAAAGATAGTTTAGAAGTAGAATTACTCAAATGACAGATTTGAATCATGGTGAAGTATTATCTTATCTGAAATTTGAAAGAAGTGATATTAATTTTTTTGGTGAAACGTGAAGTATTATCTTATCTTAAACTTGAAAGAGGTGATATTAATTTTTTGGTGAACCTGAAGTTCCCATTGTTCAACCTCCATATTTGAATCTCTAACCTTAATTTCTCTTTCTTATTTATTTCCTTACTTGAGTAAGCAGCGATGATGCATGTTTTACAGGCTAATTTCCATTTCACTTTATAGTTTTTCAAATGTTTAATATGACTCATAAAAGGCTCTCAAACTTCATCCCATGCTGACTTCAAAAGCTGAAAAGGACTTTTTGCCACATTTTCAGAATTATGGTGCCTTCTTGGAGAAGGATGGGGCAGGTTTTAAAGGTCAGATAAAGCTTACAGGATGCAAAAGCGGGGATATCAATCTCACAACATCTTTATGGACCTACCAGGTACCTCATTTTTTTCACCTTAAATGAATCTTGATGGTCACACGTGATAAAAGGATCAAACTTCTCAATTGTATTTGGTGTTAACAGATAATTACTCAGGTAAACTTGCAGTTTGTAATGAGTCCAAAGGTAGATATATTGGTGCAAATCAGAGTGTATAGATCCAATTTCTGTTATAGACATTGTAGGGTCCTTGTGAGATAATATAGGGCTTAGGTGGTTCCTCTCTAACCTTTTTTTTTTGGGGATTGAATCCACTTATGTGAACACTCCATTTTGGCTTCCGACACTTCGTGTTGATGATTTATAGACCATTAGTTACCTTGTCAAAAAAAAAAAAAAAAACCTGAGAAACTACTCTAGACCGACTAGACTGGAAAGACAAGCTGGTTTACTTCACTCGTTAGTGCTATATGAACAGTGTTAATGGTGCTGAGCAAATTGATGATAGAATCGTGGATAATACGCGGAAAAAGTCCCAATTAGTTTCTGTCCAAAAGCTTTTGGCTATGCATCTTTTCTCAGTGAATATCTGGTTGTCATATTTAAATAGATTGTGAATCTGGAATTACTTCTCATTTGTAGACCCATTGTGTTCCTTCAGTTAAGCTAAAATGCTTCCTATATGTATAGAAAATATAACCTTCAAAAAACAAGGCTTCTATATCCATCTGTTCTCTGCTTGTGAATTTACAAAATTTGATATAAGCCAGGCTATGCACACAGAATCAACTTGCAAAAAAAGTACCATTTCTTCTACATGGAATAAATAAAATTGATCTTAATGTGAACTTGAAGATGACTAAACTTGTTTAATGCCTTTTCATATACAATGGAAAAATAGGAAACCTGACTTCTAGTTATATGTTCAACAGGTGGGGCTTAGAGGCGAATTCCTGGAAGTATATGATGTCAATAGTACTGAAA</genome_strand>
        <mrna_strand>GTTGGGAATAATTCTTTGTTTCTACAAGTAATCACTAAAAGCAAGCTCGAAAGTTTTTCACAATCTTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................AATTATGGTGCCTTCTTGGAGAAGGATGGGGCAGGTTTTAGAGGTCAGATAAAGCTTACAGGATGCAAAAGCGGGGATATCAATCTCACAACATCTTTATGGACCTACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCTTAGAGGCGAATTCCTGGAAGTATATGATGGCAATAGTACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E291086" ref_strand="+" ref_description="SGN-E291086 [cLET-8-A18]">
      <seq>ttggatgacattgaaggagccacttggtgtgtggggtgacaagaatttcacttctaaaggaatactggagcatctgaatgtgacaaaagaccagtctgattacctgtggtatctgaccaggatatatatttctgatgatgacatctcattttgggaggaaaatgatgttagtccaacaattgatattgatagcatgcgtgattttgttcgcatttttgataatgggcagcttgcaggtagtgtgaaaggcaaatggatcaaggtggttcaacctgttaagctggttcagggatacaacgacatactgctattatctgagacggtgggattgcagaattatggtgccttcttggagaaggatggggcaggttttaaaggtcagataaagcttacaggatgcaaaagcggggatatcaatctcacaacatctttatggacctaccaggtggggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="49802" stop="46834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49502" g_stop="49383" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49382" i_stop="48311" i_length="1072">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48310" g_stop="48195" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="236" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48194" i_stop="47732" i_length="463">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47731" g_stop="47634" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="334" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47633" i_stop="47247" i_length="387">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47246" g_stop="47136" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="445" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E291086" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49502" e_stop="49383"/>
          <exon e_start="48310" e_stop="48195"/>
          <exon e_start="47731" e_stop="47634"/>
          <exon e_start="47246" e_stop="47136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAGGTATTTCAATTATAACTGAGGTTAGGTCAGACTAAACAGTGAGTAATACCTTAATTTGGAACCACTTGATAATGGGACTTCTCCAATTCCATATATAGCTTTAAAACCGCACCGTTTATACCACATTCTTAGATGGCATCTGTACTGGAATTTAAAGCGACTTTGAACATGAGAAGATACCCTCAGAAGCCAAAATCTTGTAAAATGTGATTGTGAGCAGTATTGAATGTTTCGACATAAGATGGCCAGTGGAACACTCTGCATGAATTAACGAGTTTGATGTTCATACACTACAGAGTATTGTACGCGACAACATTTTTGAAGAAAATGGGTACACTTACATGGCCACTCTGTCTGCTCTTTGCTAACTTAACATTAGACGTAAGACTAACTTAATAAGCTACAGACAGGAAACTTCTGGTTTAACCGAACTGTTCTCTTTCCCTGTATTGCCACTGTGCGTGCCTGTCTTTGTATATTTGTTTGTGTTTTTTTCCCTTTTTATCCCCTATACTAATATACTTTGGCTTCTGTATCACTGGAGAGATATGATACTTAACCTGTGGTCTGAGGATTTCAAATTGTAGGACTAAAAGGAATATTGGAATTTCAACTAAGGGAATAAGAACTTCGTTGAGAAAGAACGCCATTCTCTTTCTCAATGTTCTGTTGTCTCCCTTTCTCTTTGACTCATGTTTTCTTATACTTTAACAAGTGAATAACCACACAACACCTATACAAAAACACAGGAAGATTTTGAAGTTGAACTGTCTTATAACCCTTTATTCTTGGTGTAATCGTGTCCTCCCCAAAGAGGTGGAGGATATTACTCACTTTTTAGATAGTTTAGGAGGGTATAAATGATAAATCTTTTGGTTTTTGCTTACTGTATACTCCTGATGTAATTACTACTGAAATACACCAATGGTGTATTATTGTCTATAAAATGTTAACTTTCTCAATCAGAAAAAAAAAACACTGAAAGATTTGGTTACAAATAGATTCATGACATTTATCATTGGTTGCAAACTGAAATAGTGATGACTTGCTCTGCTATCTCTGATGAATGCAGGATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAGGTATTTGGTTAGGTTTCTTTTGTGCTATATTATTATGCATCTCTTTTCTTTGTGTTATAGCATTATCCAATTCTCCTGGTACTATCGAATTGTACTTCAGACGTTGAACTTTTCTTGGTCTGCATGAATATGATTTATTTATTTTTTGATAAAGGTAACAGTGTATGAATATGATTTTCAAATTTATGTTAATTTCCATCTCTGAGCATGGGGACAGTCTGATGGACTGTCGTAGAAAGATGTTCCCGTTTATGTTGGTTTCCATCTCTGAACATAATGGTCTGATGAATTGCCATAGAATGTCTGTCAAATAAAAATATAAAATCTCACTATTTTGCTTGTGTTTATAGTGCATGAGGCTGAAACGTTAGTCAAGCTAGCGTAGTCGTTTATTTCCTTTTTTCTCCTCATATCTCTGATTCGTCACCCATTTTACCCTATGACATGTCTGTTGTAAGTGTAGGTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAGGTAAAGATAGTTTAGAAGTAGAATTACTCAAATGACAGATTTGAATCATGGTGAAGTATTATCTTATCTGAAATTTGAAAGAAGTGATATTAATTTTTTTGGTGAAACGTGAAGTATTATCTTATCTTAAACTTGAAAGAGGTGATATTAATTTTTTGGTGAACCTGAAGTTCCCATTGTTCAACCTCCATATTTGAATCTCTAACCTTAATTTCTCTTTCTTATTTATTTCCTTACTTGAGTAAGCAGCGATGATGCATGTTTTACAGGCTAATTTCCATTTCACTTTATAGTTTTTCAAATGTTTAATATGACTCATAAAAGGCTCTCAAACTTCATCCCATGCTGACTTCAAAAGCTGAAAAGGACTTTTTGCCACATTTTCAGAATTATGGTGCCTTCTTGGAGAAGGATGGGGCAGGTTTTAAAGGTCAGATAAAGCTTACAGGATGCAAAAGCGGGGATATCAATCTCACAACATCTTTATGGACCTACCAG</genome_strand>
        <mrna_strand>TTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGATAATGGGCAGCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................AATTATGGTGCCTTCTTGGAGAAGGATGGGGCAGGTTTTAAAGGTCAGATAAAGCTTACAGGATGCAAAAGCGGGGATATCAATCTCACAACATCTTTATGGACCTACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E298764" ref_strand="+" ref_description="SGN-E298764 [cLET-44-E23]">
      <seq>ttggatgacattgaaggagccacttggtgtgtggggtgacaagaatttcacttctaaaggaatactggagcatctgaatgtgacaaaagaccagtctgattacctgtggtatctgaccaggatatatatttctgatgatgacatctcattttgggaggaaaatgatgttagtccaacaattgatattgatagcatgcgtgattttgttcgcatttttgttaatgggcagcttgcaggtagtgtgaaaagcaaatggatcaaggtggttcaacctgttaagctggttcatggatacaacgacatactgctattatctgagacggtgggattgcagaattatggtgccttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="49802" stop="46930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49502" g_stop="49383" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49382" i_stop="48311" i_length="1072">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48310" g_stop="48195" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="236" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48194" i_stop="47732" i_length="463">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.887" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47731" g_stop="47634" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="334" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47633" i_stop="47247" i_length="387">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47246" g_stop="47230" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="351" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E298764" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49502" e_stop="49383"/>
          <exon e_start="48310" e_stop="48195"/>
          <exon e_start="47731" e_stop="47634"/>
          <exon e_start="47246" e_stop="47230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAGGTATTTCAATTATAACTGAGGTTAGGTCAGACTAAACAGTGAGTAATACCTTAATTTGGAACCACTTGATAATGGGACTTCTCCAATTCCATATATAGCTTTAAAACCGCACCGTTTATACCACATTCTTAGATGGCATCTGTACTGGAATTTAAAGCGACTTTGAACATGAGAAGATACCCTCAGAAGCCAAAATCTTGTAAAATGTGATTGTGAGCAGTATTGAATGTTTCGACATAAGATGGCCAGTGGAACACTCTGCATGAATTAACGAGTTTGATGTTCATACACTACAGAGTATTGTACGCGACAACATTTTTGAAGAAAATGGGTACACTTACATGGCCACTCTGTCTGCTCTTTGCTAACTTAACATTAGACGTAAGACTAACTTAATAAGCTACAGACAGGAAACTTCTGGTTTAACCGAACTGTTCTCTTTCCCTGTATTGCCACTGTGCGTGCCTGTCTTTGTATATTTGTTTGTGTTTTTTTCCCTTTTTATCCCCTATACTAATATACTTTGGCTTCTGTATCACTGGAGAGATATGATACTTAACCTGTGGTCTGAGGATTTCAAATTGTAGGACTAAAAGGAATATTGGAATTTCAACTAAGGGAATAAGAACTTCGTTGAGAAAGAACGCCATTCTCTTTCTCAATGTTCTGTTGTCTCCCTTTCTCTTTGACTCATGTTTTCTTATACTTTAACAAGTGAATAACCACACAACACCTATACAAAAACACAGGAAGATTTTGAAGTTGAACTGTCTTATAACCCTTTATTCTTGGTGTAATCGTGTCCTCCCCAAAGAGGTGGAGGATATTACTCACTTTTTAGATAGTTTAGGAGGGTATAAATGATAAATCTTTTGGTTTTTGCTTACTGTATACTCCTGATGTAATTACTACTGAAATACACCAATGGTGTATTATTGTCTATAAAATGTTAACTTTCTCAATCAGAAAAAAAAAACACTGAAAGATTTGGTTACAAATAGATTCATGACATTTATCATTGGTTGCAAACTGAAATAGTGATGACTTGCTCTGCTATCTCTGATGAATGCAGGATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAGGTATTTGGTTAGGTTTCTTTTGTGCTATATTATTATGCATCTCTTTTCTTTGTGTTATAGCATTATCCAATTCTCCTGGTACTATCGAATTGTACTTCAGACGTTGAACTTTTCTTGGTCTGCATGAATATGATTTATTTATTTTTTGATAAAGGTAACAGTGTATGAATATGATTTTCAAATTTATGTTAATTTCCATCTCTGAGCATGGGGACAGTCTGATGGACTGTCGTAGAAAGATGTTCCCGTTTATGTTGGTTTCCATCTCTGAACATAATGGTCTGATGAATTGCCATAGAATGTCTGTCAAATAAAAATATAAAATCTCACTATTTTGCTTGTGTTTATAGTGCATGAGGCTGAAACGTTAGTCAAGCTAGCGTAGTCGTTTATTTCCTTTTTTCTCCTCATATCTCTGATTCGTCACCCATTTTACCCTATGACATGTCTGTTGTAAGTGTAGGTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAGGTAAAGATAGTTTAGAAGTAGAATTACTCAAATGACAGATTTGAATCATGGTGAAGTATTATCTTATCTGAAATTTGAAAGAAGTGATATTAATTTTTTTGGTGAAACGTGAAGTATTATCTTATCTTAAACTTGAAAGAGGTGATATTAATTTTTTGGTGAACCTGAAGTTCCCATTGTTCAACCTCCATATTTGAATCTCTAACCTTAATTTCTCTTTCTTATTTATTTCCTTACTTGAGTAAGCAGCGATGATGCATGTTTTACAGGCTAATTTCCATTTCACTTTATAGTTTTTCAAATGTTTAATATGACTCATAAAAGGCTCTCAAACTTCATCCCATGCTGACTTCAAAAGCTGAAAAGGACTTTTTGCCACATTTTCAGAATTATGGTGCCTTCTT</genome_strand>
        <mrna_strand>TTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTGAAAAGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCATGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAG...................................................................................................................................................................................................................................................................................................................................................................................................AATTATGGTGCCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E274217" ref_strand="+" ref_description="SGN-E274217 [cLEN-8-N2]">
      <seq>tgtttcagttgggaataattctttgtttctacaagtaatcactaaaagcaagctcgaaagtttttcacaatcttggatgacattgaaggagccacttggtgtgtggggtgacaagaatttcacttctaaaggaatactggagcatctgaatgtgacaaaagaccagtctgattacctgtggtatctgaccaggatatatatttctgatgatgacatctcattttgggaggaaaatgatgttagtccaacaattgatattgatagcatgcgtgattttgttcgcatttttgctaatgggcagcttgcaggtagtgtgaaaggcaaatggatcaaggtggttcaacctgttaagctggttcagggatacaacgacatactgctattatctgagacggtgggattgcagaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="49874" stop="47334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49574" g_stop="49383" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49382" i_stop="48311" i_length="1072">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48310" g_stop="48195" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="308" r_length="116" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48194" i_stop="47732" i_length="463">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.887" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47731" g_stop="47634" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="406" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E274217" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49574" e_stop="49383"/>
          <exon e_start="48310" e_stop="48195"/>
          <exon e_start="47731" e_stop="47634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCAGTTGGGAATAATTCTTTGTTTCTACAAGTAATCACTAAAAGCAAGCTCGAAAGTTTTTCACAATCTTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAGGTATTTCAATTATAACTGAGGTTAGGTCAGACTAAACAGTGAGTAATACCTTAATTTGGAACCACTTGATAATGGGACTTCTCCAATTCCATATATAGCTTTAAAACCGCACCGTTTATACCACATTCTTAGATGGCATCTGTACTGGAATTTAAAGCGACTTTGAACATGAGAAGATACCCTCAGAAGCCAAAATCTTGTAAAATGTGATTGTGAGCAGTATTGAATGTTTCGACATAAGATGGCCAGTGGAACACTCTGCATGAATTAACGAGTTTGATGTTCATACACTACAGAGTATTGTACGCGACAACATTTTTGAAGAAAATGGGTACACTTACATGGCCACTCTGTCTGCTCTTTGCTAACTTAACATTAGACGTAAGACTAACTTAATAAGCTACAGACAGGAAACTTCTGGTTTAACCGAACTGTTCTCTTTCCCTGTATTGCCACTGTGCGTGCCTGTCTTTGTATATTTGTTTGTGTTTTTTTCCCTTTTTATCCCCTATACTAATATACTTTGGCTTCTGTATCACTGGAGAGATATGATACTTAACCTGTGGTCTGAGGATTTCAAATTGTAGGACTAAAAGGAATATTGGAATTTCAACTAAGGGAATAAGAACTTCGTTGAGAAAGAACGCCATTCTCTTTCTCAATGTTCTGTTGTCTCCCTTTCTCTTTGACTCATGTTTTCTTATACTTTAACAAGTGAATAACCACACAACACCTATACAAAAACACAGGAAGATTTTGAAGTTGAACTGTCTTATAACCCTTTATTCTTGGTGTAATCGTGTCCTCCCCAAAGAGGTGGAGGATATTACTCACTTTTTAGATAGTTTAGGAGGGTATAAATGATAAATCTTTTGGTTTTTGCTTACTGTATACTCCTGATGTAATTACTACTGAAATACACCAATGGTGTATTATTGTCTATAAAATGTTAACTTTCTCAATCAGAAAAAAAAAACACTGAAAGATTTGGTTACAAATAGATTCATGACATTTATCATTGGTTGCAAACTGAAATAGTGATGACTTGCTCTGCTATCTCTGATGAATGCAGGATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAGGTATTTGGTTAGGTTTCTTTTGTGCTATATTATTATGCATCTCTTTTCTTTGTGTTATAGCATTATCCAATTCTCCTGGTACTATCGAATTGTACTTCAGACGTTGAACTTTTCTTGGTCTGCATGAATATGATTTATTTATTTTTTGATAAAGGTAACAGTGTATGAATATGATTTTCAAATTTATGTTAATTTCCATCTCTGAGCATGGGGACAGTCTGATGGACTGTCGTAGAAAGATGTTCCCGTTTATGTTGGTTTCCATCTCTGAACATAATGGTCTGATGAATTGCCATAGAATGTCTGTCAAATAAAAATATAAAATCTCACTATTTTGCTTGTGTTTATAGTGCATGAGGCTGAAACGTTAGTCAAGCTAGCGTAGTCGTTTATTTCCTTTTTTCTCCTCATATCTCTGATTCGTCACCCATTTTACCCTATGACATGTCTGTTGTAAGTGTAGGTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAG</genome_strand>
        <mrna_strand>TGTTTCAGTTGGGAATAATTCTTTGTTTCTACAAGTAATCACTAAAAGCAAGCTCGAAAGTTTTTCACAATCTTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGCTAATGGGCAGCTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E224155" ref_strand="-" ref_description="SGN-E224155 [cLEL-19-M19]">
      <seq>gactgatggtctctccgattatactcgagcttctgaaggaagaatatctcaacattcctcgattatctgcattccactctgtctccgccactgccataggctttttctgttcgctgatgatcgtgtggacgagggccgttagtactgatttggggattttgtacggactctgctcactttctatttctcttggagtacaagatttcgattaccgatggccgactcaggtagagttcggcgtttcattgttgatgattctacttcgactttacttggagacgccgcggcggcggcggcgtgcggctggtagagtgtgatgactgattagaccagaaaaaaaaaactaactgtttaaattctaatctagtctaattagttttactaattacaaaagttgatgtttaatggactattaagtatagttatagctaattagtttaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="70213" stop="69163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69913" g_stop="69470" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="445" polyA_stop="461"/>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E224155" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224155" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69913" e_stop="69470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGATGGTCTCTCCGATTATACTCGAGCTTCTGAAGGAAGAATATCTCAACATTCCTCGATTATCTGCATTCCACTCTGTCTCCGCCACTGCCATAGGCTTTTTCTGTTCGCTGATGATCGTGTGGACGAGGGCCGTTAGTACTGATTTGGGGATTTTGTACGGACTCTGCTCACTTTCTATTTCTCTTGGAGTACAAGATTTCGATTACCGATGGCCGACTCAGGTAGAGTTCGGCGTTTCATTGTTGATGATTCTACTTCGACTTTACTTGGAGACGCCGCGGCGGCGGCGGCGTGCGGCTGGTAGAGTGTGATGACTGATTAGACCAGAAAAAAAAAACTAACTGTTTAAATTCTAATCTAGTCTAATTAGTTTTACTAATTACAAAAGTTGATGTTTAATGGACTATTAAGTATAGTTATAGCTAATTAGTTTAATTA</genome_strand>
        <mrna_strand>GACTGATGGTCTCTCCGATTATACTCGAGCTTCTGAAGGAAGAATATCTCAACATTCCTCGATTATCTGCATTCCACTCTGTCTCCGCCACTGCCATAGGCTTTTTCTGTTCGCTGATGATCGTGTGGACGAGGGCCGTTAGTACTGATTTGGGGATTTTGTACGGACTCTGCTCACTTTCTATTTCTCTTGGAGTACAAGATTTCGATTACCGATGGCCGACTCAGGTAGAGTTCGGCGTTTCATTGTTGATGATTCTACTTCGACTTTACTTGGAGACGCCGCGGCGGCGGCGGCGTGCGGCTGGTAGAGTGTGATGACTGATTAGACCAGAAAAAAAAAACTAACTGTTTAAATTCTAATCTAGTCTAATTAGTTTTACTAATTACAAAAGTTGATGTTTAATGGACTATTAAGTATAGTTATAGCTAATTAGTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E224248" ref_strand="-" ref_description="SGN-E224248 [cLEL-19-M19]">
      <seq>gaaggaagaatatctcaacattcctcgattatctgcattccactctgtctccgccactgccataggctttttctgttcgctgatgatcgtgtggacgagggccgttagtactgatttggggattttgtacggactctgctcactttctatttctcttggagtacaagatttcgattaccgatggccgactcaggtagagttcggcgtttcattgttgatgattctacttcgactttacttggagacgccgcggcggcggcggcgtgcggctggtagagtgtgatgactgattagaccagaaaaaaaaaactaactgtttaaattctaatctagtctaattagttttactaattacaaaagttgatgtttaatggactattaagtatagttatagctaattagtttaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="70179" stop="69163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69879" g_stop="69470" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="427"/>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E224248" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224248" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69879" e_stop="69470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAAGAATATCTCAACATTCCTCGATTATCTGCATTCCACTCTGTCTCCGCCACTGCCATAGGCTTTTTCTGTTCGCTGATGATCGTGTGGACGAGGGCCGTTAGTACTGATTTGGGGATTTTGTACGGACTCTGCTCACTTTCTATTTCTCTTGGAGTACAAGATTTCGATTACCGATGGCCGACTCAGGTAGAGTTCGGCGTTTCATTGTTGATGATTCTACTTCGACTTTACTTGGAGACGCCGCGGCGGCGGCGGCGTGCGGCTGGTAGAGTGTGATGACTGATTAGACCAGAAAAAAAAAACTAACTGTTTAAATTCTAATCTAGTCTAATTAGTTTTACTAATTACAAAAGTTGATGTTTAATGGACTATTAAGTATAGTTATAGCTAATTAGTTTAATTA</genome_strand>
        <mrna_strand>GAAGGAAGAATATCTCAACATTCCTCGATTATCTGCATTCCACTCTGTCTCCGCCACTGCCATAGGCTTTTTCTGTTCGCTGATGATCGTGTGGACGAGGGCCGTTAGTACTGATTTGGGGATTTTGTACGGACTCTGCTCACTTTCTATTTCTCTTGGAGTACAAGATTTCGATTACCGATGGCCGACTCAGGTAGAGTTCGGCGTTTCATTGTTGATGATTCTACTTCGACTTTACTTGGAGACGCCGCGGCGGCGGCGGCGTGCGGCTGGTAGAGTGTGATGACTGATTAGACCAGAAAAAAAAAACTAACTGTTTAAATTCTAATCTAGTCTAATTAGTTTTACTAATTACAAAAGTTGATGTTTAATGGACTATTAAGTATAGTTATAGCTAATTAGTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E719981" ref_strand="+" ref_description="SGN-E719981 [FC09BH07]">
      <seq>aatcggccgaattcgccgccgccgccgcggtgtctccaagtaaagtcgaagtagaatcatcaacaatgaaacgccgaactctacctgagtcggccatcggtaatcgaaatcttgtactccaagagaaatagaaagtgagcagagtccgtacaaaatccccaaatcagtactaacggccctcgtccacacgatcatcagcgaacagaaaaagcctatggcagtggcggagacagagtggaatgcagataatcgaggaatgttgagatattcttccttcagaagctcgagtataatcggagagaccatcagtcctattccgtcgaaggcggaagtaaagcgaggcatagtcatcactgccggaaaaggatttctatcgcgaaggaccgatatgagtccggttagaagtagcggcattgctacggtagaaacgaaccacaacgcatggatgcgaataacagccatggctaggagaaagaaaaccaacgcgaaaaacgaccagatcttttgctctgttctcattttctgctagtgtttagagaaatagaagggagtagaaatgtgatcggaactaagcgaactctcaaaactccgtcggcgcagctccggcctcttcccggttgccgattgcgcggcgccgattgaggaagaagggattgctttgcttattgagactgggacccccaattcctgtgccgattatgcccatgaagtaaaacagtgcccgtgtttttcctaatttaccctctagttttattttatttttatataactagagttagtaaaaattaaatcaatgatgaaactgaatagaaaaaaatgttattaattatatgtatagtgacagagttagaattttgatcaaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="+" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="69316" stop="70769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69611" g_stop="70469" g_length="859"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="867" r_length="859" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="+" ref_id="SGN-E719981" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69611" e_stop="70469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCACGCCGCCGCCGCCGCGGCGTCTCCAAGTAAAGTCGAAGTAGAATCATCAACAATGAAACGCCGAACTCTACCTGAGTCGGCCATCGGTAATCGAAATCTTGTACTCCAAGAGAAATAGAAAGTGAGCAGAGTCCGTACAAAATCCCCAAATCAGTACTAACGGCCCTCGTCCACACGATCATCAGCGAACAGAAAAAGCCTATGGCAGTGGCGGAGACAGAGTGGAATGCAGATAATCGAGGAATGTTGAGATATTCTTCCTTCAGAAGCTCGAGTATAATCGGAGAGACCATCAGTCCTATTCCGTCGAAGGCGGAAGTAAAGCGAGGCATAGTCATCACTGCCGGAAAAGGATTTCTATCGCGAAGGACCGATATGAGTCCGGTTAGAAGTAGCGGCATTGCTACGGTAGAAACGAACCACAACGCATGGATGCGAATAACAGCCATGGCTAGGAGAAAGAAAACCAACGCGAAAAACGACCAGATCTTTTGCTCTGTTCTCATTTTCTGCTAGTGTTTAGAGAAATAGAAGGGAGTAGAAATGTGATCGGAACTAAGCGAACTCTCAAAACTCCGTCGGCGCAGCTCCGGCCTCTTCCCGGTTGCCGATTGCGCGGCGCCGATTGAGGAAGAAGGGATTGCTTTGCTTATTGAGACTGGGACCCCCAATTCCTGTGCCGATTATGCCCATGAAGTAAAACAGTGCCCGTGTTTTTCCTAATTTACCCTCTAGTTTTATTTTATTTTTATATAACTAGAGTTAGTAAAAATTAAATCAATGATGAAACTGAATAGAAAAAAATGTTATTAATTATATGTATAGTGACAGAGTTAGAATTTTGATCAAGGAAT</genome_strand>
        <mrna_strand>GAATTCGCCGCCGCCGCCGCGGTGTCTCCAAGTAAAGTCGAAGTAGAATCATCAACAATGAAACGCCGAACTCTACCTGAGTCGGCCATCGGTAATCGAAATCTTGTACTCCAAGAGAAATAGAAAGTGAGCAGAGTCCGTACAAAATCCCCAAATCAGTACTAACGGCCCTCGTCCACACGATCATCAGCGAACAGAAAAAGCCTATGGCAGTGGCGGAGACAGAGTGGAATGCAGATAATCGAGGAATGTTGAGATATTCTTCCTTCAGAAGCTCGAGTATAATCGGAGAGACCATCAGTCCTATTCCGTCGAAGGCGGAAGTAAAGCGAGGCATAGTCATCACTGCCGGAAAAGGATTTCTATCGCGAAGGACCGATATGAGTCCGGTTAGAAGTAGCGGCATTGCTACGGTAGAAACGAACCACAACGCATGGATGCGAATAACAGCCATGGCTAGGAGAAAGAAAACCAACGCGAAAAACGACCAGATCTTTTGCTCTGTTCTCATTTTCTGCTAGTGTTTAGAGAAATAGAAGGGAGTAGAAATGTGATCGGAACTAAGCGAACTCTCAAAACTCCGTCGGCGCAGCTCCGGCCTCTTCCCGGTTGCCGATTGCGCGGCGCCGATTGAGGAAGAAGGGATTGCTTTGCTTATTGAGACTGGGACCCCCAATTCCTGTGCCGATTATGCCCATGAAGTAAAACAGTGCCCGTGTTTTTCCTAATTTACCCTCTAGTTTTATTTTATTTTTATATAACTAGAGTTAGTAAAAATTAAATCAATGATGAAACTGAATAGAAAAAAATGTTATTAATTATATGTATAGTGACAGAGTTAGAATTTTGATCAAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E370242" ref_strand="-" ref_description="SGN-E370242 [TUS-28-G24]">
      <seq>attgttgtcccctgaaggtgaggttgattgccaaagctttgcatatcatatgctgttgcccctgtacaaagtttgtgaaggatttgccggaaaagttatatcagacgacgtgaaacaactggctgaaggagtgcgggggagcataagcaatgttataggaacacatatttttgtccaaatttacagtcatataaggaagaatatcaaatcgaagagggataagaggaaacaagaaaagaaggtcattgctgtcgtcaatccaatgagaaacgccaaaagaaagctgcggatttcagaaaagcataaagcacccaagaagaggaaaatgatggcaatgaagatgggaagatggatgtagtagaatgtttactattataggatttatggagcatcgattttcgatagcagtagcttttataaaaatttttgtttaatttatgtaaccaaattttccattgtatagtggtgtaatattttgagttgccctaagcttagtttaaaaaattgaatcaagtttttcaatgtatagtgaatatagtgtctctttgattaacctacaatgctatagaacattgtaagaaattgaactctgtaatttattgatttttagtaatggaaaggaatttttttcctttttttggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="73946" stop="46491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73646" g_stop="73543" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73542" i_stop="73387" i_length="156">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73386" g_stop="72849" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="642" r_length="538" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72848" i_stop="71603" i_length="1246">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71602" g_stop="71584" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="661" r_length="19" r_score="0.789"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71583" i_stop="71467" i_length="117">
            <donor d_prob="0.651" d_score="0.00"/>
            <acceptor a_prob="0.703" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71466" g_stop="71462" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="666" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E370242" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370242" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73646" e_stop="73543"/>
          <exon e_start="73386" e_stop="72849"/>
          <exon e_start="71602" e_stop="71584"/>
          <exon e_start="71466" e_stop="71462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTGTCCCCTGAAGGTGAGGTTGATTGCCAAAGCTTTGCATATCATATGCTGTTGCCCCTGTACAAAGTTTGTGAAGGATTTGCCGGAAAAGTTATATCAGGTATGGTCTCATTCAATCTCTTGCAAACTTGCTGTTTCAAGTGTCTGTCCATACTATCTTATTTACAAATGTTCTTCACTTCCTCTTTGGCTTCCGAGTGATTAAACTTTGTCGTCCTTGATATATTTGATGATTATGTTTACATCATCTCCACAGACGACGTGAAACAACTGGCTGAAGGAGTGCGGGGGAGCATAAGCAATGTTATAGGAACACATATTTTTGTCCAAATCTACAGTCATATAAGGAAGAATATCAAATCGAAGAGGGATAAGAGGAAACAAGAAGAGAAGGTCATTGCTGTCGTCAATCCAATGAGAAACGCCAAGAGAAAGCTGCGGATCTCAGAAAAGCATAAAGCACACAAGAAGAGGAAAATGATGGCAATGAAGATGGGAAGATGGATGTAGTAGAATGTTTACTATTATAGGATCTATGGAGCATCGATCTTCGATAGCAGTAGCTTCTATAGAAATTTTTGTTTAATTTATGTAACCAAATTTTCCATTGTATAGTGGTGTAATATTTTGAGTTGCACTAAGCTTAGTTTAAAAAATTGAATCAAGTTTTTCAATGTATAGTGAATATAGTGTCTCTTTGATTAACCTACAATGCTATAGAACATTGTAAGAAATTGAACTCTGTAATTTATTGATTTTTAGTAATGGAGAGGAATCTTCTTCCTTTTTTTGGAATCAGTTATCAAATATGATATTACTTCGTACAAATTTATATATGCATAAACTCATTTAATCAACTACTAAACATGATAATAATATTATTTGTCAAAATTTATATAAATTTAAGTGGGCATTTATGCATACCCAATAATAAGGGACAAATATAAAAGAAGTCCCAATAATATATTAGTGGTATTTCAAATTCAAATATATATATTTTTTTAAAAAAAGTAAAAGTGAATGAGACATAACTAAGAAACAAATTATTGGGGAAACTTCCCTTTCATTTTGGTTAACCTTCTTGTGAAAGTATACATCTAAATATTTTAATTTAGCTTTGATTAACAGTTAAACACACTAACTTGGTTTCACCATATCTCGTGAATATTCTACATTGATGTAATATATAATTACTGAAAGAGTCTAAATAATCATTTTATAAATTAGAAAATTTAACTAAGACCAAATTTAAATAACACATGTTTATGTATTATACCTTTTTCTAATCCTAACCCCTCATAAAATGAGGAAAACAGTACACTCCAAAGCTTAATAAACAGAGATCAAAACTTTGAACTAAATAAAAGTATATTGTGAATTAGTTATTTAATTCGTACAATTTAAAATTAATGGTATTACCATAATTTTGAGCAATATACAAATGGTATATTTGTCATTTTACCACAAAGTCACATGCTTTGTCTGTGTCATGATATATGAAACCACAAAGTCACATGTTTTGTCTACGTCACGATGTATGGAACCACAAAGTCACATGCTTTGTCTACGTCATGATGTATGGAACCACAAAGTTACATGCTTTGTCTACGTCACGATGTATGGAATGATGCTTGTTGCACTCACTTCAAATTACCATCCAATTGACTTGTAATACAAATTTTTATAGTTAGTTTTAATAGTTTTTAACACTTATGAGTGTATAAATCATATTTTTCTAAAAAAGTGAAATATACTTCCTAAATTTTATAGTCAAACGCATAGTGGAATTTCACCCAAATTTTTCACTTAAATAATATTTGCCAAAAATATTTAAAAATTTATGGTCAAACACTAGCAAAATACGAGTGATTTTTATTCTGAAAGTGCAATTTCAACCTTAGTCCAAAGGGGTCGTTTGAAGATGCATGATCTAGCCATCGAAACATCAATTCAGGAACATATAATAAAATTGAAACGATACAAAAAAAATTAATATACTCCATACACAAAAATAACACGTACAAATCGAGAACTGATCCAAATAACACCAAAAAAAAAAGCAAAATTCATTCAAAAAAACACAACAATATAACATCATAATAATTAGACACAAATGAAAAACATAAAATTCATATGCTCATTCACTATTGATCACCTCTACATCGATAATACTTAGAACAA</genome_strand>
        <mrna_strand>ATTGTTGTCCCCTGAAGGTGAGGTTGATTGCCAAAGCTTTGCATATCATATGCTGTTGCCCCTGTACAAAGTTTGTGAAGGATTTGCCGGAAAAGTTATATCAG............................................................................................................................................................ACGACGTGAAACAACTGGCTGAAGGAGTGCGGGGGAGCATAAGCAATGTTATAGGAACACATATTTTTGTCCAAATTTACAGTCATATAAGGAAGAATATCAAATCGAAGAGGGATAAGAGGAAACAAGAAAAGAAGGTCATTGCTGTCGTCAATCCAATGAGAAACGCCAAAAGAAAGCTGCGGATTTCAGAAAAGCATAAAGCACCCAAGAAGAGGAAAATGATGGCAATGAAGATGGGAAGATGGATGTAGTAGAATGTTTACTATTATAGGATTTATGGAGCATCGATTTTCGATAGCAGTAGCTTTTATAAAAATTTTTGTTTAATTTATGTAACCAAATTTTCCATTGTATAGTGGTGTAATATTTTGAGTTGCCCTAAGCTTAGTTTAAAAAATTGAATCAAGTTTTTCAATGTATAGTGAATATAGTGTCTCTTTGATTAACCTACAATGCTATAGAACATTGTAAGAAATTGAACTCTGTAATTTATTGATTTTTAGTAATGGAAAGGAATTTTTTTCCTTTTTTTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA.....................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E243181" ref_strand="+" ref_description="SGN-E243181 [cLEE-2-P8]">
      <seq>tttgtccaaatctacagtcatataaggaagaatatcaaatcgaagagggataagaggaaacacgaagagaaggtcattgctgtcgtcaatccaatgagaaacgccgagagaaagctgcggatctcagaaaagcataaagcacacaagaagaggaaaatgatggcaatgaagatgggaagatggatgtagtaaaatgtttactattataggatctatggagcatcgatcttcgatagcagtagcttctatagaaatttttgcttaatttatgtaaccaaattttccattgtatagtggtgtaatattttgagttgcactaagcttagtttaaaaaattaaatcaagtttttcaatgtatagtgaatatagtgtctctttgattaacctaccatgctatagaacattgtaagaaattgaactctgtcatttattgatgtttagtactggagaggaatcttcttcctttttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="73621" stop="72550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73321" g_stop="72850" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E243181" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73321" e_stop="72850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCCAAATCTACAGTCATATAAGGAAGAATATCAAATCGAAGAGGGATAAGAGGAAACAAGAAGAGAAGGTCATTGCTGTCGTCAATCCAATGAGAAACGCCAAGAGAAAGCTGCGGATCTCAGAAAAGCATAAAGCACACAAGAAGAGGAAAATGATGGCAATGAAGATGGGAAGATGGATGTAGTAGAATGTTTACTATTATAGGATCTATGGAGCATCGATCTTCGATAGCAGTAGCTTCTATAGAAATTTTTGTTTAATTTATGTAACCAAATTTTCCATTGTATAGTGGTGTAATATTTTGAGTTGCACTAAGCTTAGTTTAAAAAATTGAATCAAGTTTTTCAATGTATAGTGAATATAGTGTCTCTTTGATTAACCTACAATGCTATAGAACATTGTAAGAAATTGAACTCTGTAATTTATTGATTTTTAGTAATGGAGAGGAATCTTCTTCCTTTTTTTGG</genome_strand>
        <mrna_strand>TTTGTCCAAATCTACAGTCATATAAGGAAGAATATCAAATCGAAGAGGGATAAGAGGAAACACGAAGAGAAGGTCATTGCTGTCGTCAATCCAATGAGAAACGCCGAGAGAAAGCTGCGGATCTCAGAAAAGCATAAAGCACACAAGAAGAGGAAAATGATGGCAATGAAGATGGGAAGATGGATGTAGTAAAATGTTTACTATTATAGGATCTATGGAGCATCGATCTTCGATAGCAGTAGCTTCTATAGAAATTTTTGCTTAATTTATGTAACCAAATTTTCCATTGTATAGTGGTGTAATATTTTGAGTTGCACTAAGCTTAGTTTAAAAAATTAAATCAAGTTTTTCAATGTATAGTGAATATAGTGTCTCTTTGATTAACCTACCATGCTATAGAACATTGTAAGAAATTGAACTCTGTCATTTATTGATGTTTAGTACTGGAGAGGAATCTTCTTCCTTTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E370243" ref_strand="+" ref_description="SGN-E370243 [TUS-28-G24]">
      <seq>ttttcttcatagctacttctctttgttgccaactgaaggtgttgcagactgatgatgctgccagtgatctcattactcaaaatcttgtattttcaatttgctctctgcattcattcttaggaaaaactgaatgtaaagataagttctggtccaccattgaacatgacgagcagggtcttctacttaaggcttttcaacagcttgattcaaggaaagggaaaaacatctatttgtctcttgtgtctgaccttagtgatcaagaagatgaaggccagcgctacttggtcatttcttatttgcttaagacaatgggaaagatttcccttcatgtggaggatatgcagatgagaattatcttcaattgtttcaaatcagtttcaccaaagcttatagatcagagtagattgttgtcccctgaaggtgaggttgattgccaaagctttgcatatcatatgctgttgcccctgtacaaagtttgtgaaggatttgccggaaaagttatatcagacgacgtgaaacaactggctgaaggagtgcggnggagcataagcaatgttataggaacacatatttttgtccaaatctacagtcatataaggaagaatatcaaatcgaagagggataagaggaaacaagaagagaaggtcattgctgtcgtcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="74534" stop="72931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74234" g_stop="73891" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73890" i_stop="73706" i_length="185">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.816" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73705" g_stop="73543" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="507" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73542" i_stop="73387" i_length="156">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73386" g_stop="73231" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="663" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E370243" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74234" e_stop="73891"/>
          <exon e_start="73705" e_stop="73543"/>
          <exon e_start="73386" e_stop="73231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATAGCTACTTCTCTTTGTTGCCAACTGAAGGTGTTGCAGACTGATGATGCTGCCAGTGATCTCATTACTCAAAATCTTGTATTTTCAATTTGCTCTCTGCATTCATTCTTAGGAAAAACTGAATGTAAAGATAAGTTCTGGTCCACCATTGAACATGACGAGCAGGGTCTTCTACTTAAGGCTTTTCAACAGCTTGATTCAAGGAAAGGGAAAAACATCTATTTGTCTCTTGTGTCTGACCTTAGTGATCAAGAAGATGAAGGCCAGCGCTACTTGGTCATTTCTTATTTGCTTAAGACAATGGGAAAGATTTCCCTTCATGTGGAGGATATGCAGGTGGGTAATTATATAAGGGTATCTCTGTTTGCTCAACTCGCAAAATAATTCATAGCCTAGTCATTGCTATGTAATTTACTTTCTCGCTGTTTTTCCAAATAAAATATTTTGGGTCTTACTCTCCCATATATAGTGCTCTAGGAGTGCCTGTTCTCATGCTGTGGAATGTGCACATTTTTTTGCAGATGAGAATTATCTTCAATTGTTTCAAATCAGTTTCACCAAAGCTTATAGATCAGAGTAGATTGTTGTCCCCTGAAGGTGAGGTTGATTGCCAAAGCTTTGCATATCATATGCTGTTGCCCCTGTACAAAGTTTGTGAAGGATTTGCCGGAAAAGTTATATCAGGTATGGTCTCATTCAATCTCTTGCAAACTTGCTGTTTCAAGTGTCTGTCCATACTATCTTATTTACAAATGTTCTTCACTTCCTCTTTGGCTTCCGAGTGATTAAACTTTGTCGTCCTTGATATATTTGATGATTATGTTTACATCATCTCCACAGACGACGTGAAACAACTGGCTGAAGGAGTGCGGGGGAGCATAAGCAATGTTATAGGAACACATATTTTTGTCCAAATCTACAGTCATATAAGGAAGAATATCAAATCGAAGAGGGATAAGAGGAAACAAGAAGAGAAGGTCATTGCTGTCGTCAATC</genome_strand>
        <mrna_strand>TTTTCTTCATAGCTACTTCTCTTTGTTGCCAACTGAAGGTGTTGCAGACTGATGATGCTGCCAGTGATCTCATTACTCAAAATCTTGTATTTTCAATTTGCTCTCTGCATTCATTCTTAGGAAAAACTGAATGTAAAGATAAGTTCTGGTCCACCATTGAACATGACGAGCAGGGTCTTCTACTTAAGGCTTTTCAACAGCTTGATTCAAGGAAAGGGAAAAACATCTATTTGTCTCTTGTGTCTGACCTTAGTGATCAAGAAGATGAAGGCCAGCGCTACTTGGTCATTTCTTATTTGCTTAAGACAATGGGAAAGATTTCCCTTCATGTGGAGGATATGCAG.........................................................................................................................................................................................ATGAGAATTATCTTCAATTGTTTCAAATCAGTTTCACCAAAGCTTATAGATCAGAGTAGATTGTTGTCCCCTGAAGGTGAGGTTGATTGCCAAAGCTTTGCATATCATATGCTGTTGCCCCTGTACAAAGTTTGTGAAGGATTTGCCGGAAAAGTTATATCAG............................................................................................................................................................ACGACGTGAAACAACTGGCTGAAGGAGTGCGGNGGAGCATAAGCAATGTTATAGGAACACATATTTTTGTCCAAATCTACAGTCATATAAGGAAGAATATCAAATCGAAGAGGGATAAGAGGAAACAAGAAGAGAAGGTCATTGCTGTCGTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E722076" ref_strand="+" ref_description="SGN-E722076 [FC16AE07]">
      <seq>ccccgctcactcccctttttcttgagtttagtcggtcctggtatctgggagataaaccacatttatggagtgctgcagcacaggttttggggttactcattgaagtacttaaagatggtttccaaaagtatattgatagccttctacctgttatgagaaacatcttgcaatctgctgttaatgttcttacaaataagcaagtggatctaccgaatgatgcaacaatttcatcttggaaagaagcatattattcactggttctgtttgagaagatattaaatcaatttcctaagttgtgcttcaaaaaggattttgaggatctgtgggaagcaatctgtgagttgcttttgcatccgcatctgtggttgcgcaacatatcaaaccgtcttgtggcttgctactttgccactgtgactgaggcttgtaaagaaaaccttgaactgccacaaggaacttactttttgatgaggccaagtagacttttcttcatagctacttctctttgttgccaactgaaggtgttgcaaactgatgatgctgccagtgatctcattactcaaaatcttgtattttcaatttgctctctgcattcattcttaggaaaaactgaatgtaaagataagttctggtccaccattgaacatgacgagcagggtcttctacttaaggcttttcaacagcttgattcaaggaaagggaaaaacatctatttgtctcttgtgtctgaccttagtgatcaagaagatgaaggccagcgctacttggtcatttcttatttgcttaagacaatggggaaagattttcccttcatgtggaggaatatgcagatgaaaattatcttcaattgtttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="76170" stop="73378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75889" g_stop="75806" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75805" i_stop="75544" i_length="262">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75543" g_stop="75310" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="317" r_length="234" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75309" i_stop="74398" i_length="912">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74397" g_stop="73891" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="827" r_length="510" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73890" i_stop="73706" i_length="185">
            <donor d_prob="0.902" d_score="0.87"/>
            <acceptor a_prob="0.816" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73705" g_stop="73678" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="855" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E722076" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75889" e_stop="75806"/>
          <exon e_start="75543" e_stop="75310"/>
          <exon e_start="74397" e_stop="73891"/>
          <exon e_start="73705" e_stop="73678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCGCTCACTCCAGTCAATTCTTGAGTTTAGTCGGTCCTGGTATCTGGGAGATAAACCACATTTATGGAGTGCTGCAGCACAGGTAAAAGAGTGAAAACCCCAAACTACTCTTTTATGCAACTACATTATGCCATCGTGGAGCATGTTTGGAAATACCGAAGAAGGATTACAAGTTCCATATGTCATTCACTTTTTTCATATTCGTTTATCTATGGACTATGAATTAAATAACCGGAAGAATGGACAAAAATTGACCTCATTATTTTGTCATGAATCTGAGATATAACTCCTTCCTCGTCAAAAATAGAAAAACATGTTTCAAGACTTCATCATTTCTTTTACAGGTTTTGGGGTTACTCATTGAAGTACTTAAAGATGGTTTCCAAAAGTATATTGATAGCCTTCTACCTGTTATGAGAAACATCTTGCAATCTGCTGTTAATGTTCTTACAAATAAGCAAGTGGATCTACCGAATGATGCAACAATTTCATCTTGGAAAGAAGCATATTATTCACTGGTTCTGTTTGAGAAGATATTAAATCAATTTCCTAAGTTGTGCTTCAGAAAGGATTTTGAGGTATTTATCCCTTTCTTTTAATCCATATTAGAAATTAAAGTGACTACTACTAGGTACTAACTGATTACTTCTGTAAATAAGACAACAACAACAACATATGAGCATTTATAAGTTTGGCCTGCCATCCAGACTTATTCATAACTGGTTGAGTGCCTTTTGAGGCATTGTTTTGATACTCTATAGTACATATTGGATGTTTGTTTCTGTAGAATGTAAAAAGATAAAATATCTTCTATATCTATCCTCTATAGAATGGATATTAGTCTCTGTAGAATGAAAAAAATTACTATATTTTCTCTCTATCCTTTATTTCATTGGTGCTAGTGCTGCTGTATTTCATTATTTTAGCTATGGTCTTAAAACATAGGAGAGCTAAAACCAAGCATCCATAATATGTCCAACTTAGCATATGTACGAGGGGACTTATGTGAAAACCACTGGACCTCATTTTGCTTTGTGGTAGATTTAAGAAATGAATTACTTTTTGGTGTGGCTAAAACCACTTCAGTGAAATTGCTTTGGTCCTCAAACTTAGGCAGCATGCCAAAAGAGAGATTGCAACTACAGACTAGGTGTAAAGTTAAGAAGTATTTGAAAATCAAGTGCTTAGAGTTTGAATTGTATACTGGGCTTAAATTTGAAGATGATACTTTTACTTAGATTTGATGCACTTGAGCCGAAGATTTTTCGGAAACAGCCTCTCTACCTCCACGAGGTAGTGGTAAGGACTGCGTACACTCTACTCTCCCCTGACCCCACTTAGTGGGATTTCAGTAGGTATGTTATTGTTGTACTGGGAAAGTATGCTCCACGGCTACCACACTCCCATTTCCAGATTGCCAATAACTTGTCCTGTTCTGTGGATAAATTCTTATTTGTTTTCTGACTATTATTTTTACCGACATCTCATAGGATCTGTGGGAAGCAATCTGTGAGTTGCTTTTGCATCCGCATCTGTGGTTGCGCAACATATCAAACCGTCTTGTGGCTTGCTACTTTGCCACTGTGACTGAGGCTTGTAAAGAAAACCTTGAACTGCCACAAGGAACTTACTTTTTGATGAGGCCAAGTAGACTTTTCTTCATAGCTACTTCTCTTTGTTGCCAACTGAAGGTGTTGCAGACTGATGATGCTGCCAGTGATCTCATTACTCAAAATCTTGTATTTTCAATTTGCTCTCTGCATTCATTCTTAGGAAAAACTGAATGTAAAGATAAGTTCTGGTCCACCATTGAACATGACGAGCAGGGTCTTCTACTTAAGGCTTTTCAACAGCTTGATTCAAGGAAAGGGAAAAACATCTATTTGTCTCTTGTGTCTGACCTTAGTGATCAAGAAGATGAAGGCCAGCGCTACTTGGTCATTTCTTATTTGCTTAAGACAAT-GGGAAAGA-TTTCCCTTCATGTGGAGG-ATATGCAGGTGGGTAATTATATAAGGGTATCTCTGTTTGCTCAACTCGCAAAATAATTCATAGCCTAGTCATTGCTATGTAATTTACTTTCTCGCTGTTTTTCCAAATAAAATATTTTGGGTCTTACTCTCCCATATATAGTGCTCTAGGAGTGCCTGTTCTCATGCTGTGGAATGTGCACATTTTTTTGCAGATGAGAATTATCTTCAATTGTTTCAAAT</genome_strand>
        <mrna_strand>CCCCGCTCACTCCCCT-TTTTCTTGAGTTTAGTCGGTCCTGGTATCTGGGAGATAAACCACATTTATGGAGTGCTGCAGCACAG......................................................................................................................................................................................................................................................................GTTTTGGGGTTACTCATTGAAGTACTTAAAGATGGTTTCCAAAAGTATATTGATAGCCTTCTACCTGTTATGAGAAACATCTTGCAATCTGCTGTTAATGTTCTTACAAATAAGCAAGTGGATCTACCGAATGATGCAACAATTTCATCTTGGAAAGAAGCATATTATTCACTGGTTCTGTTTGAGAAGATATTAAATCAATTTCCTAAGTTGTGCTTCAAAAAGGATTTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGTGGGAAGCAATCTGTGAGTTGCTTTTGCATCCGCATCTGTGGTTGCGCAACATATCAAACCGTCTTGTGGCTTGCTACTTTGCCACTGTGACTGAGGCTTGTAAAGAAAACCTTGAACTGCCACAAGGAACTTACTTTTTGATGAGGCCAAGTAGACTTTTCTTCATAGCTACTTCTCTTTGTTGCCAACTGAAGGTGTTGCAAACTGATGATGCTGCCAGTGATCTCATTACTCAAAATCTTGTATTTTCAATTTGCTCTCTGCATTCATTCTTAGGAAAAACTGAATGTAAAGATAAGTTCTGGTCCACCATTGAACATGACGAGCAGGGTCTTCTACTTAAGGCTTTTCAACAGCTTGATTCAAGGAAAGGGAAAAACATCTATTTGTCTCTTGTGTCTGACCTTAGTGATCAAGAAGATGAAGGCCAGCGCTACTTGGTCATTTCTTATTTGCTTAAGACAATGGGGAAAGATTTTCCCTTCATGTGGAGGAATATGCAG.........................................................................................................................................................................................ATGAAAATTATCTTCAATTGTTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-RA58bV/sgn_ests_tomato" ref_id="SGN-E270692" ref_strand="+" ref_description="SGN-E270692 [cLEM-6-M18]">
      <seq>ttttcttcatagctacttctctttgttgccaactgaaggtgttgcagactgatgatgctgccagtgatctcattactcaaaatcttgtattttcaatttgctctctgcattcattcttaggaaaaactgaatgtaaagataagttctggtccaccattgaacatgacgagcagggtcttctacttaaggcttttcaacagcttgattcaaggaaagggaaaaacatctatttgtctcttgtgtctgaccttagtgatcaagaagatgaaggccagcgctacttggtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0176I09-tedxS/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0176I09.1" temp_strand="-" temp_description="C09HBa0176I09.1  EF606851.1 htgs_phase:2 submitted_to_sgn_as:gb|EF606851.1| upload_account_name:spain (1 - 90433)">
        <position start="74534" stop="73645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74234" g_stop="73945" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0176I09.1" gen_strand="-" ref_id="SGN-E270692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0176I09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74234" e_stop="73945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCATAGCTACTTCTCTTTGTTGCCAACTGAAGGTGTTGCAGACTGATGATGCTGCCAGTGATCTCATTACTCAAAATCTTGTATTTTCAATTTGCTCTCTGCATTCATTCTTAGGAAAAACTGAATGTAAAGATAAGTTCTGGTCCACCATTGAACATGACGAGCAGGGTCTTCTACTTAAGGCTTTTCAACAGCTTGATTCAAGGAAAGGGAAAAACATCTATTTGTCTCTTGTGTCTGACCTTAGTGATCAAGAAGATGAAGGCCAGCGCTACTTGGTCATT</genome_strand>
        <mrna_strand>TTTTCTTCATAGCTACTTCTCTTTGTTGCCAACTGAAGGTGTTGCAGACTGATGATGCTGCCAGTGATCTCATTACTCAAAATCTTGTATTTTCAATTTGCTCTCTGCATTCATTCTTAGGAAAAACTGAATGTAAAGATAAGTTCTGGTCCACCATTGAACATGACGAGCAGGGTCTTCTACTTAAGGCTTTTCAACAGCTTGATTCAAGGAAAGGGAAAAACATCTATTTGTCTCTTGTGTCTGACCTTAGTGATCAAGAAGATGAAGGCCAGCGCTACTTGGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>45</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6032" PGL_stop="1167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6032" e_stop="5864"/>
            <exon e_start="3604" e_stop="3349"/>
            <exon e_start="1947" e_stop="1167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6032" e_stop="5864" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5863" i_stop="3605" i_length="2259"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3604" e_stop="3349" e_length="256"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3348" i_stop="1948" i_length="1401"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="1947" e_stop="1167" e_length="781"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6032" stop="5864"/>
              <exon start="3604" stop="3349"/>
              <exon start="1947" stop="1167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6009" stop="5864"/>
              <exon start="3604" stop="3349"/>
              <exon start="1947" stop="1539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6003" stop="5864"/>
              <exon start="3604" stop="3349"/>
              <exon start="1947" stop="1789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6003" stop="5864"/>
              <exon start="3604" stop="3465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6001" stop="5864"/>
              <exon start="3604" stop="3349"/>
              <exon start="1947" stop="1598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5997" stop="5864"/>
              <exon start="3604" stop="3349"/>
              <exon start="1947" stop="1891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3561" stop="3349"/>
              <exon start="1947" stop="1446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1801" stop="1290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGCAAAGAAGAAAGCGAGAGAGAGAGGAGAGAGAAAGCGAGAGAGAGGAGAGAGAGATCTTGTGTGTGTTTATATATGTATATGCACACACATATATATATTCAAAGAAGCAAATCTGTGGGAATATTTTTTGGGGTGGAATTTGGAAATTGGATCTGACGTTGAAAG : ATTGCAGAATGGAAGATGGCATATTCTTTTGGGGCCCTGTAACATCTAAAGAGTGGTGTGAGCCAAATTATGTGCAGTCATCCTATATTGCAGAATTCTTCAACACCATTTCAAATATCCCATGCATTCTCTTGGCTCTTATTGGTCTTGTCAACGCCCTTAGACAACGGTTTGAGAAAAGGTTCAGTGTCCTTCATATGTCAAACATAATACTTGCCTTGGGGAGTATGACATATCATGCCACTTTGCGGCAGAT : GCAACAGCAAGGTGATGAGACACCAATGGTCTGGGAGATGCTTCTGTATATCTATATCCTCTATTCACCAGATTGGCATTATCGGAGTACGATGCCCACCTTTCTGTTCCTTTATGGTGCGCTCTTTGCCATTGTGCATTCACAGCTTCGCTTTGGCATTGGTTTCAAAGTACACTACGCACTTTTGTGCCTTCTTTGCGCTCCTCGTGCATATAAGTATTACATTCATACAGAAGACACATTGGCTAAGCGCCTCGCAAAGTTATACGTGGCAACTTTGTTGGTCGGAGCTGCTTGCTGGCTATGTGATCGATTATTCTGCAAGCAGATTCAGGGCTGGTACATTAATCCACAGGGCCATGCAGTCTGGCACGTCTTAATGGGCTTCAACTCGTACTTTGCAAATGCATTCTTGATGTATTGCCGTGCTCAGCAACGTGAATGGAATCCCAAAATCAAGCACTTGTTCGGTTTTTTCCCCTATGTGAAGATTGAGAAACCGAAAACCCAGTAGCAGAAGTCGCTTCTCTTTCGAGCTTAGCCTGTAATACCCCAAACATGTGCAGGATATGGCTTTGGTGAGCACAAAGCAAGCACTCAGCAATTTTTTTTCTCTTTTCCCATTTTGCAGAATGTATTGTAAATGAAAGTCTGGAATAGTTTCGACTCTCGACCGAATATTGGTTAATTTTTGACTGTACAATTAGTGGTTTTCCAGTGTACCATATTTTACACTCCCACAGAAGATGACATGGATTAACTAGTTGAATTCTTTTTTCTG</gDNA_template>
            <first_frame> *  Q  R  R  K  R  E  R  E  E  R  E  S  E  R  E  E  R  E  I  L  C  V  F  I  Y  V  Y  A  H  T  Y  I  Y  S  K  K  Q  I  C  G  N  I  F  W  G  G  I  W  K  L  D  L  T  L  K   : D  C  R  M  E  D  G  I  F  F  W  G  P  V  T  S  K  E  W  C  E  P  N  Y  V  Q  S  S  Y  I  A  E  F  F  N  T  I  S  N  I  P  C  I  L  L  A  L  I  G  L  V  N  A  L  R  Q  R  F  E  K  R  F  S  V  L  H  M  S  N  I  I  L  A  L  G  S  M  T  Y  H  A  T  L  R  Q  M :   Q  Q  Q  G  D  E  T  P  M  V  W  E  M  L  L  Y  I  Y  I  L  Y  S  P  D  W  H  Y  R  S  T  M  P  T  F  L  F  L  Y  G  A  L  F  A  I  V  H  S  Q  L  R  F  G  I  G  F  K  V  H  Y  A  L  L  C  L  L  C  A  P  R  A  Y  K  Y  Y  I  H  T  E  D  T  L  A  K  R  L  A  K  L  Y  V  A  T  L  L  V  G  A  A  C  W  L  C  D  R  L  F  C  K  Q  I  Q  G  W  Y  I  N  P  Q  G  H  A  V  W  H  V  L  M  G  F  N  S  Y  F  A  N  A  F  L  M  Y  C  R  A  Q  Q  R  E  W  N  P  K  I  K  H  L  F  G  F  F  P  Y  V  K  I  E  K  P  K  T  Q  *  Q  K  S  L  L  F  R  A  *  P  V  I  P  Q  T  C  A  G  Y  G  F  G  E  H  K  A  S  T  Q  Q  F  F  F  S  F  P  I  L  Q  N  V  L  *  M  K  V  W  N  S  F  D  S  R  P  N  I  G  *  F  L  T  V  Q  L  V  V  F  Q  C  T  I  F  Y  T  P  T  E  D  D  M  D  *  L  V  E  F  F  F  L </first_frame>
            <second_frame>  S  K  E  E  S  E  R  E  R  R  E  K  A  R  E  R  R  E  R  S  C  V  C  L  Y  M  Y  M  H  T  H  I  Y  I  Q  R  S  K  S  V  G  I  F  F  G  V  E  F  G  N  W  I  *  R  *  K  :  I  A  E  W  K  M  A  Y  S  F  G  A  L  *  H  L  K  S  G  V  S  Q  I  M  C  S  H  P  I  L  Q  N  S  S  T  P  F  Q  I  S  H  A  F  S  W  L  L  L  V  L  S  T  P  L  D  N  G  L  R  K  G  S  V  S  F  I  C  Q  T  *  Y  L  P  W  G  V  *  H  I  M  P  L  C  G  R   : C  N  S  K  V  M  R  H  Q  W  S  G  R  C  F  C  I  S  I  S  S  I  H  Q  I  G  I  I  G  V  R  C  P  P  F  C  S  F  M  V  R  S  L  P  L  C  I  H  S  F  A  L  A  L  V  S  K  Y  T  T  H  F  C  A  F  F  A  L  L  V  H  I  S  I  T  F  I  Q  K  T  H  W  L  S  A  S  Q  S  Y  T  W  Q  L  C  W  S  E  L  L  A  G  Y  V  I  D  Y  S  A  S  R  F  R  A  G  T  L  I  H  R  A  M  Q  S  G  T  S  *  W  A  S  T  R  T  L  Q  M  H  S  *  C  I  A  V  L  S  N  V  N  G  I  P  K  S  S  T  C  S  V  F  S  P  M  *  R  L  R  N  R  K  P  S  S  R  S  R  F  S  F  E  L  S  L  *  Y  P  K  H  V  Q  D  M  A  L  V  S  T  K  Q  A  L  S  N  F  F  S  L  F  P  F  C  R  M  Y  C  K  *  K  S  G  I  V  S  T  L  D  R  I  L  V  N  F  *  L  Y  N  *  W  F  S  S  V  P  Y  F  T  L  P  Q  K  M  T  W  I  N  *  L  N  S  F  F   </second_frame>
            <third_frame>   A  K  K  K  A  R  E  R  G  E  R  K  R  E  R  G  E  R  D  L  V  C  V  Y  I  C  I  C  T  H  I  Y  I  F  K  E  A  N  L  W  E  Y  F  L  G  W  N  L  E  I  G  S  D  V  E  R :   L  Q  N  G  R  W  H  I  L  L  G  P  C  N  I  *  R  V  V  *  A  K  L  C  A  V  I  L  Y  C  R  I  L  Q  H  H  F  K  Y  P  M  H  S  L  G  S  Y  W  S  C  Q  R  P  *  T  T  V  *  E  K  V  Q  C  P  S  Y  V  K  H  N  T  C  L  G  E  Y  D  I  S  C  H  F  A  A  D  :  A  T  A  R  *  *  D  T  N  G  L  G  D  A  S  V  Y  L  Y  P  L  F  T  R  L  A  L  S  E  Y  D  A  H  L  S  V  P  L  W  C  A  L  C  H  C  A  F  T  A  S  L  W  H  W  F  Q  S  T  L  R  T  F  V  P  S  L  R  S  S  C  I  *  V  L  H  S  Y  R  R  H  I  G  *  A  P  R  K  V  I  R  G  N  F  V  G  R  S  C  L  L  A  M  *  S  I  I  L  Q  A  D  S  G  L  V  H  *  S  T  G  P  C  S  L  A  R  L  N  G  L  Q  L  V  L  C  K  C  I  L  D  V  L  P  C  S  A  T  *  M  E  S  Q  N  Q  A  L  V  R  F  F  P  L  C  E  D  *  E  T  E  N  P  V  A  E  V  A  S  L  S  S  L  A  C  N  T  P  N  M  C  R  I  W  L  W  *  A  Q  S  K  H  S  A  I  F  F  L  F  S  H  F  A  E  C  I  V  N  E  S  L  E  *  F  R  L  S  T  E  Y  W  L  I  F  D  C  T  I  S  G  F  P  V  Y  H  I  L  H  S  H  R  R  *  H  G  L  T  S  *  I  L  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6029" stop="5864"/>
                    <exon start="3604" stop="3349"/>
                    <exon start="1947" stop="1434"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRRKREREERESEREEREILCVFIYVYAHTYIYSKKQICGNIFWGGIWKLDLTLKDCRMEDGIFFWGPVTSKEWCEPNYVQSSYIAEFFNTISNIPCILLALIGLVNALRQRFEKRFSVLHMSNIILALGSMTYHATLRQMQQQGDETPMVWEMLLYIYILYSPDWHYRSTMPTFLFLYGALFAIVHSQLRFGIGFKVHYALLCLLCAPRAYKYYIHTEDTLAKRLAKLYVATLLVGAACWLCDRLFCKQIQGWYINPQGHAVWHVLMGFNSYFANAFLMYCRAQQREWNPKIKHLFGFFPYVKIEKPKTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8872" PGL_stop="7047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8872" e_stop="8770"/>
            <exon e_start="8674" e_stop="8547"/>
            <exon e_start="7557" e_stop="7047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.657" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8872" e_stop="8770" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8769" i_stop="8675" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8674" e_stop="8547" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.657" acc_prob="0.983">
            <gDNA_intron_boundary i_start="8546" i_stop="7558" i_length="989"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="7557" e_stop="7047" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8872" stop="8770"/>
              <exon start="8674" stop="8547"/>
              <exon start="7557" stop="7084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550554" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7485" stop="7047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7485" stop="7053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539600" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7484" stop="7047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285111" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGAAGGTAAAGAGGAGAAATCTGTAACTTGTGCTATTGAGGAAGATGTGAAATCAAGCAATTCCCATTGCATTTCCTACTTGATCAAGGATCGCAGTAAG : GCAAAGAAGGTAGATGATATGAGACAGAAGCTTAGGATGAGGGGTCTGCGCTGCCATTTGATGTATTGCAGGAATTCAACAAGAATGCAAGTTGTTCCTCTGCTTGCGTCTCGGTCACAGGCACTCAG : GTATCTATTTGTACGCTGGAGATTGAACGTTGCAAACATGTGTGTCATCCTCGGTGAAACTGGAGACACGGATTATGAAGAACTTATATCCGGAACTCACAAAACACTGATCTTGAAAGGTGCTGTCGAGGAAGGTTCAGAAAATCTGCTAAGAACATCAGGGAGCTACCTAAGAGAAGACGTCGTTCCACCAGAGAGTCCTCTGATCATCTACACCGGTGGAAACGAAACAGTAGAAGAGTTTGCCAATGCATTGAAGCAAGTGTGTAGATGAGGCACACAAAAATGGTATACTTATACTCATTCCTTATAGAAGGAATTATATAACATACTATATACAACAAACCTTTTTTTCTCCTTTTCTCTTCCATTTTTTTGAGCTTTTACTTTAAGGAATGCAATAATGTGTTTCTCAAGCATTTCTTGATTACCAATCCCATTCTCTCTTATGTTGTATGAACAGAGACGAATTCATAATTTAAATTTGATATATTCAACCCTAAAAGTTCTT</gDNA_template>
            <first_frame> T  R  R  *  R  G  E  I  C  N  L  C  Y  *  G  R  C  E  I  K  Q  F  P  L  H  F  L  L  D  Q  G  S  Q  *   : G  K  E  G  R  *  Y  E  T  E  A  *  D  E  G  S  A  L  P  F  D  V  L  Q  E  F  N  K  N  A  S  C  S  S  A  C  V  S  V  T  G  T  Q  :  V  S  I  C  T  L  E  I  E  R  C  K  H  V  C  H  P  R  *  N  W  R  H  G  L  *  R  T  Y  I  R  N  S  Q  N  T  D  L  E  R  C  C  R  G  R  F  R  K  S  A  K  N  I  R  E  L  P  K  R  R  R  R  S  T  R  E  S  S  D  H  L  H  R  W  K  R  N  S  R  R  V  C  Q  C  I  E  A  S  V  *  M  R  H  T  K  M  V  Y  L  Y  S  F  L  I  E  G  I  I  *  H  T  I  Y  N  K  P  F  F  L  L  F  S  S  I  F  L  S  F  Y  F  K  E  C  N  N  V  F  L  K  H  F  L  I  T  N  P  I  L  S  Y  V  V  *  T  E  T  N  S  *  F  K  F  D  I  F  N  P  K  S  S  </first_frame>
            <second_frame>  Q  E  G  K  E  E  K  S  V  T  C  A  I  E  E  D  V  K  S  S  N  S  H  C  I  S  Y  L  I  K  D  R  S  K  :  A  K  K  V  D  D  M  R  Q  K  L  R  M  R  G  L  R  C  H  L  M  Y  C  R  N  S  T  R  M  Q  V  V  P  L  L  A  S  R  S  Q  A  L  R :   Y  L  F  V  R  W  R  L  N  V  A  N  M  C  V  I  L  G  E  T  G  D  T  D  Y  E  E  L  I  S  G  T  H  K  T  L  I  L  K  G  A  V  E  E  G  S  E  N  L  L  R  T  S  G  S  Y  L  R  E  D  V  V  P  P  E  S  P  L  I  I  Y  T  G  G  N  E  T  V  E  E  F  A  N  A  L  K  Q  V  C  R  *  G  T  Q  K  W  Y  T  Y  T  H  S  L  *  K  E  L  Y  N  I  L  Y  T  T  N  L  F  F  S  F  S  L  P  F  F  *  A  F  T  L  R  N  A  I  M  C  F  S  S  I  S  *  L  P  I  P  F  S  L  M  L  Y  E  Q  R  R  I  H  N  L  N  L  I  Y  S  T  L  K  V  L </second_frame>
            <third_frame>   K  K  V  K  R  R  N  L  *  L  V  L  L  R  K  M  *  N  Q  A  I  P  I  A  F  P  T  *  S  R  I  A  V  R :   Q  R  R  *  M  I  *  D  R  S  L  G  *  G  V  C  A  A  I  *  C  I  A  G  I  Q  Q  E  C  K  L  F  L  C  L  R  L  G  H  R  H  S   : G  I  Y  L  Y  A  G  D  *  T  L  Q  T  C  V  S  S  S  V  K  L  E  T  R  I  M  K  N  L  Y  P  E  L  T  K  H  *  S  *  K  V  L  S  R  K  V  Q  K  I  C  *  E  H  Q  G  A  T  *  E  K  T  S  F  H  Q  R  V  L  *  S  S  T  P  V  E  T  K  Q  *  K  S  L  P  M  H  *  S  K  C  V  D  E  A  H  K  N  G  I  L  I  L  I  P  Y  R  R  N  Y  I  T  Y  Y  I  Q  Q  T  F  F  S  P  F  L  F  H  F  F  E  L  L  L  *  G  M  Q  *  C  V  S  Q  A  F  L  D  Y  Q  S  H  S  L  L  C  C  M  N  R  D  E  F  I  I  *  I  *  Y  I  Q  P  *  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8871" stop="8770"/>
                    <exon start="8674" stop="8547"/>
                    <exon start="7557" stop="7284"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QEGKEEKSVTCAIEEDVKSSNSHCISYLIKDRSKAKKVDDMRQKLRMRGLRCHLMYCRNSTRMQVVPLLASRSQALRYLFVRWRLNVANMCVILGETGDTDYEELISGTHKTLILKGAVEEGSENLLRTSGSYLREDVVPPESPLIIYTGGNETVEEFANALKQVCR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15308" PGL_stop="12922"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15308" e_stop="14871"/>
            <exon e_start="13111" e_stop="12922"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.957" e_score="0.936"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="15308" e_stop="14871" e_length="438"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.957">
            <gDNA_intron_boundary i_start="14870" i_stop="13112" i_length="1759"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="13111" e_stop="12922" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15308" stop="14871"/>
              <exon start="13111" stop="12922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739583" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAATTTCAAGAATTTCATTTTTTTGGAAAAAAAATCCAGTCTTTGATGTAAAGATTGAATCTTTTCAATCTCTGAGTGAACCCCATTGTTTTATTTTTCATTTTTTTGAGGTGGGTAAGTTAGAAATAGCAAAAAAAAATGGCTGGTAATGAATGGATAAATGGTTATTTAGAAGCTATATTGAGCAGTGGAGCTTCAGCTATTGAAGATAAAAAACCATCATCAACAACAACATCATCACATTTGAATTTAGCAGAAAGGGCTAATTTTAATCCAACAAAATATTTTGTCGAAGAAGTTGTTACAGGGGTTGATGAAACTGATCTTCATAGAACATGGATAAAAGTTGTAGCTACAAGGAATACAAGGGAGAGAAGTTCAAGATTGGAGAATATGTGTTGGCGCATTTGGCATCTTGCTCGCAAGAAGAAACAG : TTGGAATGGGAAGACCTCCAGAGGTCTGCAAACAGAAGATTGGAACGAGAACTAGGACGCAAAGATGTTACAGAGGATATGTCAGAAGATTTATCTGAAGGGGAAAAGGGTGATGTTTTAGGGGAGACACCAACACTTGACAGCCCGAGGAAAAGGTTTCAGAGGAACTTTTCCAATTTGGAAGTGTGGT</gDNA_template>
            <first_frame> Q  K  F  Q  E  F  H  F  F  G  K  K  I  Q  S  L  M  *  R  L  N  L  F  N  L  *  V  N  P  I  V  L  F  F  I  F  L  R  W  V  S  *  K  *  Q  K  K  M  A  G  N  E  W  I  N  G  Y  L  E  A  I  L  S  S  G  A  S  A  I  E  D  K  K  P  S  S  T  T  T  S  S  H  L  N  L  A  E  R  A  N  F  N  P  T  K  Y  F  V  E  E  V  V  T  G  V  D  E  T  D  L  H  R  T  W  I  K  V  V  A  T  R  N  T  R  E  R  S  S  R  L  E  N  M  C  W  R  I  W  H  L  A  R  K  K  K  Q  :  L  E  W  E  D  L  Q  R  S  A  N  R  R  L  E  R  E  L  G  R  K  D  V  T  E  D  M  S  E  D  L  S  E  G  E  K  G  D  V  L  G  E  T  P  T  L  D  S  P  R  K  R  F  Q  R  N  F  S  N  L  E  V  W  </first_frame>
            <second_frame>  K  N  F  K  N  F  I  F  L  E  K  K  S  S  L  *  C  K  D  *  I  F  S  I  S  E  *  T  P  L  F  Y  F  S  F  F  *  G  G  *  V  R  N  S  K  K  K  W  L  V  M  N  G  *  M  V  I  *  K  L  Y  *  A  V  E  L  Q  L  L  K  I  K  N  H  H  Q  Q  Q  H  H  H  I  *  I  *  Q  K  G  L  I  L  I  Q  Q  N  I  L  S  K  K  L  L  Q  G  L  M  K  L  I  F  I  E  H  G  *  K  L  *  L  Q  G  I  Q  G  R  E  V  Q  D  W  R  I  C  V  G  A  F  G  I  L  L  A  R  R  N  S :   W  N  G  K  T  S  R  G  L  Q  T  E  D  W  N  E  N  *  D  A  K  M  L  Q  R  I  C  Q  K  I  Y  L  K  G  K  R  V  M  F  *  G  R  H  Q  H  L  T  A  R  G  K  G  F  R  G  T  F  P  I  W  K  C  G </second_frame>
            <third_frame>   K  I  S  R  I  S  F  F  W  K  K  N  P  V  F  D  V  K  I  E  S  F  Q  S  L  S  E  P  H  C  F  I  F  H  F  F  E  V  G  K  L  E  I  A  K  K  N  G  W  *  *  M  D  K  W  L  F  R  S  Y  I  E  Q  W  S  F  S  Y  *  R  *  K  T  I  I  N  N  N  I  I  T  F  E  F  S  R  K  G  *  F  *  S  N  K  I  F  C  R  R  S  C  Y  R  G  *  *  N  *  S  S  *  N  M  D  K  S  C  S  Y  K  E  Y  K  G  E  K  F  K  I  G  E  Y  V  L  A  H  L  A  S  C  S  Q  E  E  T   : V  G  M  G  R  P  P  E  V  C  K  Q  K  I  G  T  R  T  R  T  Q  R  C  Y  R  G  Y  V  R  R  F  I  *  R  G  K  G  *  C  F  R  G  D  T  N  T  *  Q  P  E  E  K  V  S  E  E  L  F  Q  F  G  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15176" stop="14871"/>
                    <exon start="13111" stop="12923"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKMAGNEWINGYLEAILSSGASAIEDKKPSSTTTSSHLNLAERANFNPTKYFVEEVVTGVDETDLHRTWIKVVATRNTRERSSRLENMCWRIWHLARKKKQLEWEDLQRSANRRLERELGRKDVTEDMSEDLSEGEKGDVLGETPTLDSPRKRFQRNFSNLEVW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25703" PGL_stop="31055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25703" e_stop="25941"/>
            <exon e_start="26619" e_stop="26702"/>
            <exon e_start="26782" e_stop="26829"/>
            <exon e_start="26926" e_stop="26990"/>
            <exon e_start="27553" e_stop="27601"/>
            <exon e_start="27849" e_stop="28125"/>
            <exon e_start="28320" e_stop="28441"/>
            <exon e_start="28968" e_stop="29048"/>
            <exon e_start="29130" e_stop="29204"/>
            <exon e_start="29717" e_stop="29904"/>
            <exon e_start="30012" e_stop="30162"/>
            <exon e_start="30527" e_stop="31055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.988" e_score="0.992"/>
          <exon-intron don_prob="0.993" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.847" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.860" e_score="1.000"/>
          <exon-intron don_prob="0.279" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="25703" e_stop="25941" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.988">
            <gDNA_intron_boundary i_start="25942" i_stop="26618" i_length="677"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26619" e_stop="26702" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26703" i_stop="26781" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26782" e_stop="26829" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.847">
            <gDNA_intron_boundary i_start="26830" i_stop="26925" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26926" e_stop="26990" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="26991" i_stop="27552" i_length="562"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27553" e_stop="27601" e_length="49"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.860">
            <gDNA_intron_boundary i_start="27602" i_stop="27848" i_length="247"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27849" e_stop="28125" e_length="277"/>
          </exon>
          <intron i_serial="6" don_prob="0.279" acc_prob="0.991">
            <gDNA_intron_boundary i_start="28126" i_stop="28319" i_length="194"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28320" e_stop="28441" e_length="122"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="28442" i_stop="28967" i_length="526"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28968" e_stop="29048" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="29049" i_stop="29129" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29130" e_stop="29204" e_length="75"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29205" i_stop="29716" i_length="512"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="29717" e_stop="29904" e_length="188"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="29905" i_stop="30011" i_length="107"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="30012" e_stop="30162" e_length="151"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30163" i_stop="30526" i_length="364"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="30527" e_stop="31055" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25703" stop="25941"/>
              <exon start="26619" stop="26702"/>
              <exon start="26782" stop="26829"/>
              <exon start="26926" stop="26990"/>
              <exon start="27553" stop="27601"/>
              <exon start="27849" stop="27854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26644" stop="26702"/>
              <exon start="26782" stop="26829"/>
              <exon start="26926" stop="26990"/>
              <exon start="27553" stop="27601"/>
              <exon start="27849" stop="28125"/>
              <exon start="28320" stop="28441"/>
              <exon start="28968" stop="29048"/>
              <exon start="29130" stop="29178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27923" stop="28125"/>
              <exon start="28320" stop="28441"/>
              <exon start="28968" stop="29048"/>
              <exon start="29130" stop="29204"/>
              <exon start="29717" stop="29872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27933" stop="28125"/>
              <exon start="28320" stop="28441"/>
              <exon start="28968" stop="29048"/>
              <exon start="29130" stop="29204"/>
              <exon start="29717" stop="29892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27948" stop="28125"/>
              <exon start="28320" stop="28441"/>
              <exon start="28968" stop="29048"/>
              <exon start="29130" stop="29204"/>
              <exon start="29717" stop="29904"/>
              <exon start="30012" stop="30068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27960" stop="28125"/>
              <exon start="28320" stop="28441"/>
              <exon start="28968" stop="29040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29029" stop="29048"/>
              <exon start="29130" stop="29204"/>
              <exon start="29717" stop="29904"/>
              <exon start="30012" stop="30162"/>
              <exon start="30527" stop="30773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29029" stop="29048"/>
              <exon start="29130" stop="29204"/>
              <exon start="29717" stop="29904"/>
              <exon start="30012" stop="30101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29820" stop="29904"/>
              <exon start="30012" stop="30162"/>
              <exon start="30527" stop="31041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29858" stop="29904"/>
              <exon start="30012" stop="30162"/>
              <exon start="30527" stop="31055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540445" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29865" stop="29904"/>
              <exon start="30012" stop="30162"/>
              <exon start="30527" stop="31032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAAGATGAAAATAAAATACGTGCAGATTATTCCAGTGGTTCTGATATCACATATGCACTAGAAGACTTGAAAATCGGAGTTGAGGGGAATCTGGCAGAGCTTCATCCAAGTCGTAGAGTTCAGCTTAGTTTAGGTGAACCTGGGGTTTCCCTTTTCTGTTACAGAGCTGTGCTTCTTGATGCCCAAAGGAACTTTGGACCTTTTGCATATCAATGTGCTGTTTTTCTTGTGCCAAAG : ACTCGAGCTCATGAGTGGCTGTTCTCTTCAGAAGAAGGACAATGGGCAGTTGTAGAAAGCTCTAAGGCTGCTCGTTTAATAATG : ATTTTGCTGGATTCTAGCCATTCAGACGCCAGTATGGATGACATTCAG : AAAGATCTCTCTCCTCTGATAATGCAATTGGCGCCAGGAGATTTTGACGATGAAGCTCAGATACC : TTTTATGGCCGCAAGTGATGGAATCAAACAGCGAAAGATTGTTCAAGAG : ATCACATCTCCCTTGACTGGTCCAATAATTGTAGATGATGTGATCTATGAGAAAGTTGATGAAAATATTAGCCGTCTCTTTGCATCTGAGGATGTGATATTTCGTCGCCTTACTTTCCAAAGAACGGAGAGTTTAGTGCAATCTGAGGCTGTGCTATCAAAAGAAGGATCACCGAAGTCTCTAGCTGATATTAATCAGAAGATAGGCCAGTCATCTTCAAAATCCAAGAAAAAAGGAAATCAGAAAAAATCTGGGTCTAATGTCTCATCGTCTGATG : GATTGAGCAAAGATTTGAAAGTTGACCACAGTTATTTGGCCAGTTCATATCATACTGGAATCATCTCTGGTTTTACATTGATATCTTCTCATTTGGATGGTTTGGCATCTACGGGAGGCATG : GTGAGATCAGTAGTAATTGGTCTTGGAGCAGGATTGCTTCCCATGTTTCTACGTAAGCACCTGAGTTTTGCAGAGATTGAG : GTTTTGGAGTTGGATCCTGTGGTTGTAGATCTTGCTAGAGACTATTTTGATTTTAGAGATGATGAACGGTTAAAG : GTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAG : TTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCG : GTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCTAGAAGCACAAGTATGAGTTAATTCAGCCTGAACTATAAACCCTTAAAGTTCAAATTCTAGCTCCGCCTCCATCCATGCCTGCTGAGGCTGCCAATAAATCAATGCACTTCTTTTTAAGTACCTCTTCGTCGAACCACTGATTATCCCCCTTCAAGTTTGATATTTACATGCCTTGAGATTTATAACATATAGTATTGAAATTGCTATGTACATTGGATAAATTTGATATGTTTGTCAAAGTTATATAATGAGTTTATATATATCTTGTTATTCAATGTTCTT</gDNA_template>
            <first_frame> L  K  M  K  I  K  Y  V  Q  I  I  P  V  V  L  I  S  H  M  H  *  K  T  *  K  S  E  L  R  G  I  W  Q  S  F  I  Q  V  V  E  F  S  L  V  *  V  N  L  G  F  P  F  S  V  T  E  L  C  F  L  M  P  K  G  T  L  D  L  L  H  I  N  V  L  F  F  L  C  Q  R :   L  E  L  M  S  G  C  S  L  Q  K  K  D  N  G  Q  L  *  K  A  L  R  L  L  V  *  *  * :   F  C  W  I  L  A  I  Q  T  P  V  W  M  T  F  R :   K  I  S  L  L  *  *  C  N  W  R  Q  E  I  L  T  M  K  L  R  Y   : L  L  W  P  Q  V  M  E  S  N  S  E  R  L  F  K  R :   S  H  L  P  *  L  V  Q  *  L  *  M  M  *  S  M  R  K  L  M  K  I  L  A  V  S  L  H  L  R  M  *  Y  F  V  A  L  L  S  K  E  R  R  V  *  C  N  L  R  L  C  Y  Q  K  K  D  H  R  S  L  *  L  I  L  I  R  R  *  A  S  H  L  Q  N  P  R  K  K  E  I  R  K  N  L  G  L  M  S  H  R  L  M  :  D  *  A  K  I  *  K  L  T  T  V  I  W  P  V  H  I  I  L  E  S  S  L  V  L  H  *  Y  L  L  I  W  M  V  W  H  L  R  E  A  W :   *  D  Q  *  *  L  V  L  E  Q  D  C  F  P  C  F  Y  V  S  T  *  V  L  Q  R  L  R :   F  W  S  W  I  L  W  L  *  I  L  L  E  T  I  L  I  L  E  M  M  N  G  *  R :   Y  M  *  L  M  V  *  S  T  S  R  M  Q  L  M  Q  L  P  M  V  M  K  M  M  F  L  R  Q  R  S  L  L  P  M  V  I  P  P  C  L  M  H  H  L  K  A  Q  K  K  L  T  C  S  L  L  M  W  I  L  Q  T  R   : V  L  V  *  V  A  L  L  Q  T  L  L  K  S  L  F  L  W  Q  Q  K  I  L  F  L  I  K  V  Y  L  S  *  I  W  Y  R  G  H  K  P  S  R  I  P  F  T  P  N  *  S  R :   Y  F  L  T  S  S  T  F  S  W  T  K  M  S  M  R  L  F  S  L  S  R  Q  R  H  V  S  R  K  I  N  F  T  R  L  L  N  D  L  Q  D  Y  *  T  *  R  T  P  H  G  A  K  I  *  Q  K  P  L  A  R  S  K  G  *  D  D  L  R  I  D  E  C  Y  R  I  L  Q  S  R  G  E  A  R  S  T  S  M  S  *  F  S  L  N  Y  K  P  L  K  F  K  F  *  L  R  L  H  P  C  L  L  R  L  P  I  N  Q  C  T  S  F  *  V  P  L  R  R  T  T  D  Y  P  P  S  S  L  I  F  T  C  L  E  I  Y  N  I  *  Y  *  N  C  Y  V  H  W  I  N  L  I  C  L  S  K  L  Y  N  E  F  I  Y  I  L  L  F  N  V  L </first_frame>
            <second_frame>  *  R  *  K  *  N  T  C  R  L  F  Q  W  F  *  Y  H  I  C  T  R  R  L  E  N  R  S  *  G  E  S  G  R  A  S  S  K  S  *  S  S  A  *  F  R  *  T  W  G  F  P  F  L  L  Q  S  C  A  S  *  C  P  K  E  L  W  T  F  C  I  S  M  C  C  F  S  C  A  K   : D  S  S  S  *  V  A  V  L  F  R  R  R  T  M  G  S  C  R  K  L  *  G  C  S  F  N  N   : D  F  A  G  F  *  P  F  R  R  Q  Y  G  *  H  S   : E  R  S  L  S  S  D  N  A  I  G  A  R  R  F  *  R  *  S  S  D  T  :  F  Y  G  R  K  *  W  N  Q  T  A  K  D  C  S  R   : D  H  I  S  L  D  W  S  N  N  C  R  *  C  D  L  *  E  S  *  *  K  Y  *  P  S  L  C  I  *  G  C  D  I  S  S  P  Y  F  P  K  N  G  E  F  S  A  I  *  G  C  A  I  K  R  R  I  T  E  V  S  S  *  Y  *  S  E  D  R  P  V  I  F  K  I  Q  E  K  R  K  S  E  K  I  W  V  *  C  L  I  V  *  W :   I  E  Q  R  F  E  S  *  P  Q  L  F  G  Q  F  I  S  Y  W  N  H  L  W  F  Y  I  D  I  F  S  F  G  W  F  G  I  Y  G  R  H   : G  E  I  S  S  N  W  S  W  S  R  I  A  S  H  V  S  T  *  A  P  E  F  C  R  D  *   : G  F  G  V  G  S  C  G  C  R  S  C  *  R  L  F  *  F  *  R  *  *  T  V  K   : G  T  C  D  *  W  F  E  V  R  Q  G  C  S  S  C  S  Y  Q  W  L  *  K  *  C  F  *  G  K  G  P  F  F  Q  W  *  F  H  P  V  *  C  T  T  *  K  H  R  K  N  *  H  A  H  C  *  C  G  F  F  R  L  E  :  F  W  F  K  L  P  C  C  R  L  Y  *  R  V  F  S  Y  G  S  K  R  F  S  F  *  S  R  S  I  C  H  K  F  G  I  E  V  T  S  H  Q  G  F  H  L  L  Q  I  E  V   : G  I  S  S  P  L  P  P  S  A  G  R  R  C  Q  *  G  Y  F  R  S  Q  D  R  D  M  Y  H  G  R  *  I  S  Q  G  F  S  T  T  Y  K  I  I  K  P  R  E  L  L  M  G  P  K  Y  N  R  S  H  *  Q  D  Q  K  V  E  M  I  Y  A  L  M  N  A  I  E  Y  C  S  L  G  A  K  L  E  A  Q  V  *  V  N  S  A  *  T  I  N  P  *  S  S  N  S  S  S  A  S  I  H  A  C  *  G  C  Q  *  I  N  A  L  L  F  K  Y  L  F  V  E  P  L  I  I  P  L  Q  V  *  Y  L  H  A  L  R  F  I  T  Y  S  I  E  I  A  M  Y  I  G  *  I  *  Y  V  C  Q  S  Y  I  M  S  L  Y  I  S  C  Y  S  M  F   </second_frame>
            <third_frame>   E  D  E  N  K  I  R  A  D  Y  S  S  G  S  D  I  T  Y  A  L  E  D  L  K  I  G  V  E  G  N  L  A  E  L  H  P  S  R  R  V  Q  L  S  L  G  E  P  G  V  S  L  F  C  Y  R  A  V  L  L  D  A  Q  R  N  F  G  P  F  A  Y  Q  C  A  V  F  L  V  P  K  :  T  R  A  H  E  W  L  F  S  S  E  E  G  Q  W  A  V  V  E  S  S  K  A  A  R  L  I  M  :  I  L  L  D  S  S  H  S  D  A  S  M  D  D  I  Q  :  K  D  L  S  P  L  I  M  Q  L  A  P  G  D  F  D  D  E  A  Q  I  P :   F  M  A  A  S  D  G  I  K  Q  R  K  I  V  Q  E  :  I  T  S  P  L  T  G  P  I  I  V  D  D  V  I  Y  E  K  V  D  E  N  I  S  R  L  F  A  S  E  D  V  I  F  R  R  L  T  F  Q  R  T  E  S  L  V  Q  S  E  A  V  L  S  K  E  G  S  P  K  S  L  A  D  I  N  Q  K  I  G  Q  S  S  S  K  S  K  K  K  G  N  Q  K  K  S  G  S  N  V  S  S  S  D   : G  L  S  K  D  L  K  V  D  H  S  Y  L  A  S  S  Y  H  T  G  I  I  S  G  F  T  L  I  S  S  H  L  D  G  L  A  S  T  G  G  M  :  V  R  S  V  V  I  G  L  G  A  G  L  L  P  M  F  L  R  K  H  L  S  F  A  E  I  E  :  V  L  E  L  D  P  V  V  V  D  L  A  R  D  Y  F  D  F  R  D  D  E  R  L  K  :  V  H  V  T  D  G  L  K  Y  V  K  D  A  A  H  A  V  T  N  G  Y  E  N  D  V  S  E  A  K  V  P  S  S  N  G  N  S  T  L  S  N  A  P  L  K  S  T  E  K  I  D  M  L  I  V  D  V  D  S  S  D  S  S :   S  G  L  S  C  P  A  A  D  F  I  E  E  S  F  L  M  A  A  K  D  S  L  S  D  Q  G  L  F  V  I  N  L  V  S  R  S  Q  A  I  K  D  S  I  Y  S  K  L  K  S  :  V  F  P  H  L  F  H  L  Q  L  D  E  D  V  N  E  V  I  F  A  L  K  T  E  T  C  I  T  E  D  K  F  H  K  A  S  Q  R  L  T  R  L  L  N  L  E  N  S  S  W  G  Q  N  I  T  E  A  T  S  K  I  K  R  L  R  *  F  T  H  *  *  M  L  S  N  T  A  V  *  G  R  S  *  K  H  K  Y  E  L  I  Q  P  E  L  *  T  L  K  V  Q  I  L  A  P  P  P  S  M  P  A  E  A  A  N  K  S  M  H  F  F  L  S  T  S  S  S  N  H  *  L  S  P  F  K  F  D  I  Y  M  P  *  D  L  *  H  I  V  L  K  L  L  C  T  L  D  K  F  D  M  F  V  K  V  I  *  *  V  Y  I  Y  L  V  I  Q  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25705" stop="25941"/>
                    <exon start="26619" stop="26702"/>
                    <exon start="26782" stop="26829"/>
                    <exon start="26926" stop="26990"/>
                    <exon start="27553" stop="27601"/>
                    <exon start="27849" stop="28125"/>
                    <exon start="28320" stop="28441"/>
                    <exon start="28968" stop="29048"/>
                    <exon start="29130" stop="29204"/>
                    <exon start="29717" stop="29904"/>
                    <exon start="30012" stop="30162"/>
                    <exon start="30527" stop="30724"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1572</number_coding_nucleotides>
                  <number_encoded_amino_acids>524</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EDENKIRADYSSGSDITYALEDLKIGVEGNLAELHPSRRVQLSLGEPGVSLFCYRAVLLDAQRNFGPFAYQCAVFLVPKTRAHEWLFSSEEGQWAVVESSKAARLIMILLDSSHSDASMDDIQKDLSPLIMQLAPGDFDDEAQIPFMAASDGIKQRKIVQEITSPLTGPIIVDDVIYEKVDENISRLFASEDVIFRRLTFQRTESLVQSEAVLSKEGSPKSLADINQKIGQSSSKSKKKGNQKKSGSNVSSSDGLSKDLKVDHSYLASSYHTGIISGFTLISSHLDGLASTGGMVRSVVIGLGAGLLPMFLRKHLSFAEIEVLELDPVVVDLARDYFDFRDDERLKVHVTDGLKYVKDAAHAVTNGYENDVSEAKVPSSNGNSTLSNAPLKSTEKIDMLIVDVDSSDSSSGLSCPAADFIEESFLMAAKDSLSDQGLFVINLVSRSQAIKDSIYSKLKSVFPHLFHLQLDEDVNEVIFALKTETCITEDKFHKASQRLTRLLNLENSSWGQNITEATSKIKRLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29559" e_stop="29562"/>
            <exon e_start="29717" e_stop="29904"/>
            <exon e_start="30012" e_stop="30162"/>
            <exon e_start="30527" e_stop="31055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.798" acc_prob="1.000" e_score="0.750"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="0.979"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="29559" e_stop="29562" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.798" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29563" i_stop="29716" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="29717" e_stop="29904" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="29905" i_stop="30011" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30012" e_stop="30162" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30163" i_stop="30526" i_length="364"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30527" e_stop="31055" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29559" stop="29562"/>
              <exon start="29717" stop="29904"/>
              <exon start="30012" stop="30162"/>
              <exon start="30527" stop="31055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548385" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29820" stop="29904"/>
              <exon start="30012" stop="30162"/>
              <exon start="30527" stop="31041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29858" stop="29904"/>
              <exon start="30012" stop="30162"/>
              <exon start="30527" stop="31055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540445" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29865" stop="29904"/>
              <exon start="30012" stop="30162"/>
              <exon start="30527" stop="31032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAG : GTACATGTGACTGATGGTTTGAAGTACGTCAAGGATGCAGCTCATGCAGTTACCAATGGTTATGAAAATGATGTTTCTGAGGCAAAGGTCCCTTCTTCCAATGGTAATTCCACCCTGTCTAATGCACCACTTAAAAGCACAGAAAAAATTGACATGCTCATTGTTGATGTGGATTCTTCAGACTCGAG : TTCTGGTTTAAGTTGCCCTGCTGCAGACTTTATTGAAGAGTCTTTTCTTATGGCAGCAAAAGATTCTCTTTCTGATCAAGGTCTATTTGTCATAAATTTGGTATCGAGGTCACAAGCCATCAAGGATTCCATTTACTCCAAATTGAAGTCG : GTATTTCCTCACCTCTTCCACCTTCAGCTGGACGAAGATGTCAATGAGGTTATTTTCGCTCTCAAGACAGAGACATGTATCACGGAAGATAAATTTCACAAGGCTTCTCAACGACTTACAAGATTATTAAACCTAGAGAACTCCTCATGGGGCCAAAATATAACAGAAGCCACTAGCAAGATCAAAAGGTTGAGATGATTTACGCATTGATGAATGCTATCGAATACTGCAGTCTAGGGGCGAAGCTAGAAGCACAAGTATGAGTTAATTCAGCCTGAACTATAAACCCTTAAAGTTCAAATTCTAGCTCCGCCTCCATCCATGCCTGCTGAGGCTGCCAATAAATCAATGCACTTCTTTTTAAGTACCTCTTCGTCGAACCACTGATTATCCCCCTTCAAGTTTGATATTTACATGCCTTGAGATTTATAACATATAGTATTGAAATTGCTATGTACATTGGATAAATTTGATATGTTTGTCAAAGTTATATAATGAGTTTATATATATCTTGTTATTCAATGTTCTT</gDNA_template>
            <first_frame> Q   : G  T  C  D  *  W  F  E  V  R  Q  G  C  S  S  C  S  Y  Q  W  L  *  K  *  C  F  *  G  K  G  P  F  F  Q  W  *  F  H  P  V  *  C  T  T  *  K  H  R  K  N  *  H  A  H  C  *  C  G  F  F  R  L  E  :  F  W  F  K  L  P  C  C  R  L  Y  *  R  V  F  S  Y  G  S  K  R  F  S  F  *  S  R  S  I  C  H  K  F  G  I  E  V  T  S  H  Q  G  F  H  L  L  Q  I  E  V   : G  I  S  S  P  L  P  P  S  A  G  R  R  C  Q  *  G  Y  F  R  S  Q  D  R  D  M  Y  H  G  R  *  I  S  Q  G  F  S  T  T  Y  K  I  I  K  P  R  E  L  L  M  G  P  K  Y  N  R  S  H  *  Q  D  Q  K  V  E  M  I  Y  A  L  M  N  A  I  E  Y  C  S  L  G  A  K  L  E  A  Q  V  *  V  N  S  A  *  T  I  N  P  *  S  S  N  S  S  S  A  S  I  H  A  C  *  G  C  Q  *  I  N  A  L  L  F  K  Y  L  F  V  E  P  L  I  I  P  L  Q  V  *  Y  L  H  A  L  R  F  I  T  Y  S  I  E  I  A  M  Y  I  G  *  I  *  Y  V  C  Q  S  Y  I  M  S  L  Y  I  S  C  Y  S  M  F   </first_frame>
            <second_frame>  K  :  V  H  V  T  D  G  L  K  Y  V  K  D  A  A  H  A  V  T  N  G  Y  E  N  D  V  S  E  A  K  V  P  S  S  N  G  N  S  T  L  S  N  A  P  L  K  S  T  E  K  I  D  M  L  I  V  D  V  D  S  S  D  S  S :   S  G  L  S  C  P  A  A  D  F  I  E  E  S  F  L  M  A  A  K  D  S  L  S  D  Q  G  L  F  V  I  N  L  V  S  R  S  Q  A  I  K  D  S  I  Y  S  K  L  K  S  :  V  F  P  H  L  F  H  L  Q  L  D  E  D  V  N  E  V  I  F  A  L  K  T  E  T  C  I  T  E  D  K  F  H  K  A  S  Q  R  L  T  R  L  L  N  L  E  N  S  S  W  G  Q  N  I  T  E  A  T  S  K  I  K  R  L  R  *  F  T  H  *  *  M  L  S  N  T  A  V  *  G  R  S  *  K  H  K  Y  E  L  I  Q  P  E  L  *  T  L  K  V  Q  I  L  A  P  P  P  S  M  P  A  E  A  A  N  K  S  M  H  F  F  L  S  T  S  S  S  N  H  *  L  S  P  F  K  F  D  I  Y  M  P  *  D  L  *  H  I  V  L  K  L  L  C  T  L  D  K  F  D  M  F  V  K  V  I  *  *  V  Y  I  Y  L  V  I  Q  C  S  </second_frame>
            <third_frame>   R :   Y  M  *  L  M  V  *  S  T  S  R  M  Q  L  M  Q  L  P  M  V  M  K  M  M  F  L  R  Q  R  S  L  L  P  M  V  I  P  P  C  L  M  H  H  L  K  A  Q  K  K  L  T  C  S  L  L  M  W  I  L  Q  T  R   : V  L  V  *  V  A  L  L  Q  T  L  L  K  S  L  F  L  W  Q  Q  K  I  L  F  L  I  K  V  Y  L  S  *  I  W  Y  R  G  H  K  P  S  R  I  P  F  T  P  N  *  S  R :   Y  F  L  T  S  S  T  F  S  W  T  K  M  S  M  R  L  F  S  L  S  R  Q  R  H  V  S  R  K  I  N  F  T  R  L  L  N  D  L  Q  D  Y  *  T  *  R  T  P  H  G  A  K  I  *  Q  K  P  L  A  R  S  K  G  *  D  D  L  R  I  D  E  C  Y  R  I  L  Q  S  R  G  E  A  R  S  T  S  M  S  *  F  S  L  N  Y  K  P  L  K  F  K  F  *  L  R  L  H  P  C  L  L  R  L  P  I  N  Q  C  T  S  F  *  V  P  L  R  R  T  T  D  Y  P  P  S  S  L  I  F  T  C  L  E  I  Y  N  I  *  Y  *  N  C  Y  V  H  W  I  N  L  I  C  L  S  K  L  Y  N  E  F  I  Y  I  L  L  F  N  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29560" stop="29562"/>
                    <exon start="29717" stop="29904"/>
                    <exon start="30012" stop="30162"/>
                    <exon start="30527" stop="30724"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVHVTDGLKYVKDAAHAVTNGYENDVSEAKVPSSNGNSTLSNAPLKSTEKIDMLIVDVDSSDSSSGLSCPAADFIEESFLMAAKDSLSDQGLFVINLVSRSQAIKDSIYSKLKSVFPHLFHLQLDEDVNEVIFALKTETCITEDKFHKASQRLTRLLNLENSSWGQNITEATSKIKRLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="36164" PGL_stop="36806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36164" e_stop="36806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="36164" e_stop="36806" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36164" stop="36806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36165" stop="36598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36165" stop="36426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306570" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGTTCATTAGAAGTAAAAGCATGAAGAAAACACCGGGCTGCAGTCTGATTGAGATAAACAGTTTGGTCCAAGAATTTCTATCAGGTGATAATTCGAAACCATTCTCAAAAGATATCCATGAGGTGCTAGAGCTATTAGCCTTACATCAAAGCAAGGAAAATGATCTAGTTGACACAACGCTCGAGTACTTAAGTCCATGAATATATCGAGGAGAAGTTGTCATTCTGAGTGCATCCGCTCTTTTCTTGTTCAAGTTTTTAGCACATTCGTTATGTGTGGAAGTTCCAGGAGGAGTAATTCAGATTTGTGGGATAAGCAAAGACGGGACGATGAACTAGAAAGCACATATGTGAGCCTGGAAGTCTAGGCCAGACACACAACAGAGTTCGATGCCTGAAATGAGATTCTACGAATACAAATTTCACTGATTTCGCAGGCATTGGTGACAAAGGTACATACTGCAATCTTTATGTGTAAACATAGGATTGAACCACTAGTATCCGTATGCAATCGCCAAGTAGTAAACAACTCATGATGTGATTTGCTTGTTGCCTTCAAAACAACGAGTAGGTCATTGTCGACATGTCTGCTTGCCCCTGTGAATGCATCATCAATCATCTCACCTATTGACCTATCAATG</gDNA_template>
            <first_frame> G  S  S  L  E  V  K  A  *  R  K  H  R  A  A  V  *  L  R  *  T  V  W  S  K  N  F  Y  Q  V  I  I  R  N  H  S  Q  K  I  S  M  R  C  *  S  Y  *  P  Y  I  K  A  R  K  M  I  *  L  T  Q  R  S  S  T  *  V  H  E  Y  I  E  E  K  L  S  F  *  V  H  P  L  F  S  C  S  S  F  *  H  I  R  Y  V  W  K  F  Q  E  E  *  F  R  F  V  G  *  A  K  T  G  R  *  T  R  K  H  I  C  E  P  G  S  L  G  Q  T  H  N  R  V  R  C  L  K  *  D  S  T  N  T  N  F  T  D  F  A  G  I  G  D  K  G  T  Y  C  N  L  Y  V  *  T  *  D  *  T  T  S  I  R  M  Q  S  P  S  S  K  Q  L  M  M  *  F  A  C  C  L  Q  N  N  E  *  V  I  V  D  M  S  A  C  P  C  E  C  I  I  N  H  L  T  Y  *  P  I  N  </first_frame>
            <second_frame>  E  V  H  *  K  *  K  H  E  E  N  T  G  L  Q  S  D  *  D  K  Q  F  G  P  R  I  S  I  R  *  *  F  E  T  I  L  K  R  Y  P  *  G  A  R  A  I  S  L  T  S  K  Q  G  K  *  S  S  *  H  N  A  R  V  L  K  S  M  N  I  S  R  R  S  C  H  S  E  C  I  R  S  F  L  V  Q  V  F  S  T  F  V  M  C  G  S  S  R  R  S  N  S  D  L  W  D  K  Q  R  R  D  D  E  L  E  S  T  Y  V  S  L  E  V  *  A  R  H  T  T  E  F  D  A  *  N  E  I  L  R  I  Q  I  S  L  I  S  Q  A  L  V  T  K  V  H  T  A  I  F  M  C  K  H  R  I  E  P  L  V  S  V  C  N  R  Q  V  V  N  N  S  *  C  D  L  L  V  A  F  K  T  T  S  R  S  L  S  T  C  L  L  A  P  V  N  A  S  S  I  I  S  P  I  D  L  S  M </second_frame>
            <third_frame>   K  F  I  R  S  K  S  M  K  K  T  P  G  C  S  L  I  E  I  N  S  L  V  Q  E  F  L  S  G  D  N  S  K  P  F  S  K  D  I  H  E  V  L  E  L  L  A  L  H  Q  S  K  E  N  D  L  V  D  T  T  L  E  Y  L  S  P  *  I  Y  R  G  E  V  V  I  L  S  A  S  A  L  F  L  F  K  F  L  A  H  S  L  C  V  E  V  P  G  G  V  I  Q  I  C  G  I  S  K  D  G  T  M  N  *  K  A  H  M  *  A  W  K  S  R  P  D  T  Q  Q  S  S  M  P  E  M  R  F  Y  E  Y  K  F  H  *  F  R  R  H  W  *  Q  R  Y  I  L  Q  S  L  C  V  N  I  G  L  N  H  *  Y  P  Y  A  I  A  K  *  *  T  T  H  D  V  I  C  L  L  P  S  K  Q  R  V  G  H  C  R  H  V  C  L  P  L  *  M  H  H  Q  S  S  H  L  L  T  Y  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36166" stop="36366"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFIRSKSMKKTPGCSLIEINSLVQEFLSGDNSKPFSKDIHEVLELLALHQSKENDLVDTTLEYLSP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36339" stop="36533"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNARVLKSMNISRRSCHSECIRSFLVQVFSTFVMCGSSRRSNSDLWDKQRRDDELESTYVSLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="37169" PGL_stop="36380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37169" e_stop="36380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="37169" e_stop="36380" e_length="790"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37169" stop="36380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543784" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACGCAATGACAGAAAATACTAATTATAAGTATCTATAAGTATAATATTTTTTTAAAAAAAAAGACAAACGGAAATAGTATCACATAAACGGGAACAACAGTAATAATTTGTTTTACAATAAAACAGAACTTATGTTGGATGCATCTAAGTCAGTCTAGAGTGACCTTCTGTGGATTAAGCTTCAGCAACATATATATAGATTCCTCTTATGGTGATTTATATTTCTCTGGCAACAGCTTCATTTCACTTCCGAAAATGCCCTCATCGCCTTTTTTTATAAGAATAACATCGATCAGAGGCTCGGAAATCATGCAGAGTGATAGAACATAGACAAGTAAGAACCAGAAGATCAACATATTGTCATTGATAGGTCAATAGGTGAGATGATTGATGATGCATTCACAGGGGCAAGCAGACATGTCGACAATGACCTACTCGTTGTTTTGAAGGCAACAAGCAAATCACATCATGAGTTGTTTACTACTTGGCGATTGCATACGGATACTAGTGGTTCAATCCTATGTTTACACATAAAGATTGCAGTATGTACCTTTGTCACCAATGCCTGCGAAATCAGTGAAATTTGTATTCGTAGAATCTCATTTCAGGCATCGAACTCTGTTGTGTGTCTGGCCTAGACTTCCAGGCTCACATATGTGCTTTCTAGTTCATCGTCCCGTCTTTGCTTATCCCACAAATCTGAATTACTCCTCCTGGAACTTCCACACATAACGAATGTGCTAAAAACTTGAACAAGAAAAGAGCGGATGCACTCAGAATGACAACTT</gDNA_template>
            <first_frame> I  R  N  D  R  K  Y  *  L  *  V  S  I  S  I  I  F  F  *  K  K  R  Q  T  E  I  V  S  H  K  R  E  Q  Q  *  *  F  V  L  Q  *  N  R  T  Y  V  G  C  I  *  V  S  L  E  *  P  S  V  D  *  A  S  A  T  Y  I  *  I  P  L  M  V  I  Y  I  S  L  A  T  A  S  F  H  F  R  K  C  P  H  R  L  F  L  *  E  *  H  R  S  E  A  R  K  S  C  R  V  I  E  H  R  Q  V  R  T  R  R  S  T  Y  C  H  *  *  V  N  R  *  D  D  *  *  C  I  H  R  G  K  Q  T  C  R  Q  *  P  T  R  C  F  E  G  N  K  Q  I  T  S  *  V  V  Y  Y  L  A  I  A  Y  G  Y  *  W  F  N  P  M  F  T  H  K  D  C  S  M  Y  L  C  H  Q  C  L  R  N  Q  *  N  L  Y  S  *  N  L  I  S  G  I  E  L  C  C  V  S  G  L  D  F  Q  A  H  I  C  A  F  *  F  I  V  P  S  L  L  I  P  Q  I  *  I  T  P  P  G  T  S  T  H  N  E  C  A  K  N  L  N  K  K  R  A  D  A  L  R  M  T  T  </first_frame>
            <second_frame>  Y  A  M  T  E  N  T  N  Y  K  Y  L  *  V  *  Y  F  F  K  K  K  D  K  R  K  *  Y  H  I  N  G  N  N  S  N  N  L  F  Y  N  K  T  E  L  M  L  D  A  S  K  S  V  *  S  D  L  L  W  I  K  L  Q  Q  H  I  Y  R  F  L  L  W  *  F  I  F  L  W  Q  Q  L  H  F  T  S  E  N  A  L  I  A  F  F  Y  K  N  N  I  D  Q  R  L  G  N  H  A  E  *  *  N  I  D  K  *  E  P  E  D  Q  H  I  V  I  D  R  S  I  G  E  M  I  D  D  A  F  T  G  A  S  R  H  V  D  N  D  L  L  V  V  L  K  A  T  S  K  S  H  H  E  L  F  T  T  W  R  L  H  T  D  T  S  G  S  I  L  C  L  H  I  K  I  A  V  C  T  F  V  T  N  A  C  E  I  S  E  I  C  I  R  R  I  S  F  Q  A  S  N  S  V  V  C  L  A  *  T  S  R  L  T  Y  V  L  S  S  S  S  S  R  L  C  L  S  H  K  S  E  L  L  L  L  E  L  P  H  I  T  N  V  L  K  T  *  T  R  K  E  R  M  H  S  E  *  Q  L </second_frame>
            <third_frame>   T  Q  *  Q  K  I  L  I  I  S  I  Y  K  Y  N  I  F  L  K  K  K  T  N  G  N  S  I  T  *  T  G  T  T  V  I  I  C  F  T  I  K  Q  N  L  C  W  M  H  L  S  Q  S  R  V  T  F  C  G  L  S  F  S  N  I  Y  I  D  S  S  Y  G  D  L  Y  F  S  G  N  S  F  I  S  L  P  K  M  P  S  S  P  F  F  I  R  I  T  S  I  R  G  S  E  I  M  Q  S  D  R  T  *  T  S  K  N  Q  K  I  N  I  L  S  L  I  G  Q  *  V  R  *  L  M  M  H  S  Q  G  Q  A  D  M  S  T  M  T  Y  S  L  F  *  R  Q  Q  A  N  H  I  M  S  C  L  L  L  G  D  C  I  R  I  L  V  V  Q  S  Y  V  Y  T  *  R  L  Q  Y  V  P  L  S  P  M  P  A  K  S  V  K  F  V  F  V  E  S  H  F  R  H  R  T  L  L  C  V  W  P  R  L  P  G  S  H  M  C  F  L  V  H  R  P  V  F  A  Y  P  T  N  L  N  Y  S  S  W  N  F  H  T  *  R  M  C  *  K  L  E  Q  E  K  S  G  C  T  Q  N  D  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36829" stop="36530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPEDQHIVIDRSIGEMIDDAFTGASRHVDNDLLVVLKATSKSHHELFTTWRLHTDTSGSILCLHIKIAVCTFVTNACEISEICIRRISFQASNSVVCLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37080" stop="36838"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGTTVIICFTIKQNLCWMHLSQSRVTFCGLSFSNIYIDSSYGDLYFSGNSFISLPKMPSSPFFIRITSIRGSEIMQSDRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39967" PGL_stop="41553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39967" e_stop="39998"/>
            <exon e_start="40714" e_stop="41025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.935" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39967" e_stop="39998" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.935" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39999" i_stop="40713" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="40714" e_stop="41025" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39967" stop="39998"/>
              <exon start="40714" stop="41025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATTCTATTTTTCTCATTACTTTCACTTATG : CTACATTGATAATGACACAAATACCCTCAACAAATGGAGTTGTATGTGAAGAAGAACTTCAAGTTCCTTGTAAGGATGGCAATGTATTATATTGTGGCTCTATATGTTATGAAAAATATAGAGAAAATTATATGTCAACAGAGTGTGTGGAGAAATTTGCTGGTAACCCTATTTGTGTGTGTATTTACAAGAGTGAGTATGCTTGTCCACCAAACCAAAAAAAATATTAGAAATTATATTTTATTTGCATAAAAAAAATATTTATCTTTATCAGATTATATAATATATAAAGAGTTGTTGAGAAAACCTCTT</gDNA_template>
            <first_frame> L  F  Y  F  S  H  Y  F  H  L  C :   Y  I  D  N  D  T  N  T  L  N  K  W  S  C  M  *  R  R  T  S  S  S  L  *  G  W  Q  C  I  I  L  W  L  Y  M  L  *  K  I  *  R  K  L  Y  V  N  R  V  C  G  E  I  C  W  *  P  Y  L  C  V  Y  L  Q  E  *  V  C  L  S  T  K  P  K  K  I  L  E  I  I  F  Y  L  H  K  K  N  I  Y  L  Y  Q  I  I  *  Y  I  K  S  C  *  E  N  L   </first_frame>
            <second_frame>  Y  S  I  F  L  I  T  F  T  Y   : A  T  L  I  M  T  Q  I  P  S  T  N  G  V  V  C  E  E  E  L  Q  V  P  C  K  D  G  N  V  L  Y  C  G  S  I  C  Y  E  K  Y  R  E  N  Y  M  S  T  E  C  V  E  K  F  A  G  N  P  I  C  V  C  I  Y  K  S  E  Y  A  C  P  P  N  Q  K  K  Y  *  K  L  Y  F  I  C  I  K  K  I  F  I  F  I  R  L  Y  N  I  *  R  V  V  E  K  T  S  </second_frame>
            <third_frame>   I  L  F  F  S  L  L  S  L  M  :  L  H  *  *  *  H  K  Y  P  Q  Q  M  E  L  Y  V  K  K  N  F  K  F  L  V  R  M  A  M  Y  Y  I  V  A  L  Y  V  M  K  N  I  E  K  I  I  C  Q  Q  S  V  W  R  N  L  L  V  T  L  F  V  C  V  F  T  R  V  S  M  L  V  H  Q  T  K  K  N  I  R  N  Y  I  L  F  A  *  K  K  Y  L  S  L  S  D  Y  I  I  Y  K  E  L  L  R  K  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39968" stop="39998"/>
                    <exon start="40714" stop="40943"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSIFLITFTYATLIMTQIPSTNGVVCEEELQVPCKDGNVLYCGSICYEKYRENYMSTECVEKFAGNPICVCIYKSEYACPPNQKKY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40729" stop="40965"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKYPQQMELYVKKNFKFLVRMAMYYIVALYVMKNIEKIICQQSVWRNLLVTLFVCVFTRVSMLVHQTKKNIRNYILFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40730" e_stop="41019"/>
            <exon e_start="41531" e_stop="41553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.526" e_score="0.997"/>
          <exon-only e_score="0.609"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="40730" e_stop="41019" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="41020" i_stop="41530" i_length="511"/>
          </intron>
          <exon e_serial="2" e_score="0.609">
            <gDNA_exon_boundary e_start="41531" e_stop="41553" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40730" stop="41019"/>
              <exon start="41531" stop="41553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAATACCCTCAACAAATGGAGTTGTATGTGAAGAAGAACTTCAAGTTCCTTGTAAGGATGGCAATGTATTATATTGTGGCTCTATATGTTATGAAAAATATAGAGAAAATTATATGTCAACAGAGTGTGTGGAGAAATTTGCTGGTAACCCTATTTGTGTGTGTATTTACAAGAGTGAGTATGCTTGTCCACCAAACCAAAAAAAATATTAGAAATTATATTTTATTTGCATAAAAAAAATATTTATCTTTATCAGATTATATAATATATAAAGAGTTGTTGAGAAAA : GGAAACCATAACATAAAATTAAA</gDNA_template>
            <first_frame> T  N  T  L  N  K  W  S  C  M  *  R  R  T  S  S  S  L  *  G  W  Q  C  I  I  L  W  L  Y  M  L  *  K  I  *  R  K  L  Y  V  N  R  V  C  G  E  I  C  W  *  P  Y  L  C  V  Y  L  Q  E  *  V  C  L  S  T  K  P  K  K  I  L  E  I  I  F  Y  L  H  K  K  N  I  Y  L  Y  Q  I  I  *  Y  I  K  S  C  *  E  K :   E  T  I  T  *  N  *  </first_frame>
            <second_frame>  Q  I  P  S  T  N  G  V  V  C  E  E  E  L  Q  V  P  C  K  D  G  N  V  L  Y  C  G  S  I  C  Y  E  K  Y  R  E  N  Y  M  S  T  E  C  V  E  K  F  A  G  N  P  I  C  V  C  I  Y  K  S  E  Y  A  C  P  P  N  Q  K  K  Y  *  K  L  Y  F  I  C  I  K  K  I  F  I  F  I  R  L  Y  N  I  *  R  V  V  E  K   : R  K  P  *  H  K  I  K </second_frame>
            <third_frame>   K  Y  P  Q  Q  M  E  L  Y  V  K  K  N  F  K  F  L  V  R  M  A  M  Y  Y  I  V  A  L  Y  V  M  K  N  I  E  K  I  I  C  Q  Q  S  V  W  R  N  L  L  V  T  L  F  V  C  V  F  T  R  V  S  M  L  V  H  Q  T  K  K  N  I  R  N  Y  I  L  F  A  *  K  K  Y  L  S  L  S  D  Y  I  I  Y  K  E  L  L  R  K  :  G  N  H  N  I  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40732" stop="40965"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYPQQMELYVKKNFKFLVRMAMYYIVALYVMKNIEKIICQQSVWRNLLVTLFVCVFTRVSMLVHQTKKNIRNYILFA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40731" stop="40943"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIPSTNGVVCEEELQVPCKDGNVLYCGSICYEKYRENYMSTECVEKFAGNPICVCIYKSEYACPPNQKKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="62596" PGL_stop="43155"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62596" e_stop="62377"/>
            <exon e_start="61430" e_stop="61335"/>
            <exon e_start="61136" e_stop="61024"/>
            <exon e_start="60678" e_stop="60612"/>
            <exon e_start="59833" e_stop="59741"/>
            <exon e_start="59402" e_stop="59259"/>
            <exon e_start="58496" e_stop="58408"/>
            <exon e_start="52826" e_stop="52721"/>
            <exon e_start="52112" e_stop="52025"/>
            <exon e_start="51682" e_stop="51561"/>
            <exon e_start="50366" e_stop="50169"/>
            <exon e_start="49615" e_stop="49383"/>
            <exon e_start="48310" e_stop="48195"/>
            <exon e_start="47731" e_stop="47634"/>
            <exon e_start="47246" e_stop="47136"/>
            <exon e_start="46260" e_stop="46150"/>
            <exon e_start="45003" e_stop="44795"/>
            <exon e_start="44644" e_stop="44299"/>
            <exon e_start="43595" e_stop="43155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.950" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.937" acc_prob="0.963" e_score="0.987"/>
          <exon-intron don_prob="0.993" acc_prob="0.887" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.867" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62596" e_stop="62377" e_length="220"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="62376" i_stop="61431" i_length="946"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61430" e_stop="61335" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="61334" i_stop="61137" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="61136" e_stop="61024" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.893" acc_prob="0.998">
            <gDNA_intron_boundary i_start="61023" i_stop="60679" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60678" e_stop="60612" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60611" i_stop="59834" i_length="778"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59833" e_stop="59741" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.972">
            <gDNA_intron_boundary i_start="59740" i_stop="59403" i_length="338"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="59402" e_stop="59259" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.984">
            <gDNA_intron_boundary i_start="59258" i_stop="58497" i_length="762"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58496" e_stop="58408" e_length="89"/>
          </exon>
          <intron i_serial="7" don_prob="0.922" acc_prob="0.987">
            <gDNA_intron_boundary i_start="58407" i_stop="52827" i_length="5581"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52826" e_stop="52721" e_length="106"/>
          </exon>
          <intron i_serial="8" don_prob="0.827" acc_prob="0.956">
            <gDNA_intron_boundary i_start="52720" i_stop="52113" i_length="608"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="52112" e_stop="52025" e_length="88"/>
          </exon>
          <intron i_serial="9" don_prob="0.992" acc_prob="0.965">
            <gDNA_intron_boundary i_start="52024" i_stop="51683" i_length="342"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="51682" e_stop="51561" e_length="122"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.977">
            <gDNA_intron_boundary i_start="51560" i_stop="50367" i_length="1194"/>
          </intron>
          <exon e_serial="11" e_score="0.995">
            <gDNA_exon_boundary e_start="50366" e_stop="50169" e_length="198"/>
          </exon>
          <intron i_serial="11" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50168" i_stop="49616" i_length="553"/>
          </intron>
          <exon e_serial="12" e_score="0.987">
            <gDNA_exon_boundary e_start="49615" e_stop="49383" e_length="233"/>
          </exon>
          <intron i_serial="12" don_prob="0.937" acc_prob="0.963">
            <gDNA_intron_boundary i_start="49382" i_stop="48311" i_length="1072"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="48310" e_stop="48195" e_length="116"/>
          </exon>
          <intron i_serial="13" don_prob="0.993" acc_prob="0.887">
            <gDNA_intron_boundary i_start="48194" i_stop="47732" i_length="463"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="47731" e_stop="47634" e_length="98"/>
          </exon>
          <intron i_serial="14" don_prob="0.924" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47633" i_stop="47247" i_length="387"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="47246" e_stop="47136" e_length="111"/>
          </exon>
          <intron i_serial="15" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="47135" i_stop="46261" i_length="875"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="46260" e_stop="46150" e_length="111"/>
          </exon>
          <intron i_serial="16" don_prob="0.926" acc_prob="0.988">
            <gDNA_intron_boundary i_start="46149" i_stop="45004" i_length="1146"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="45003" e_stop="44795" e_length="209"/>
          </exon>
          <intron i_serial="17" don_prob="0.979" acc_prob="0.867">
            <gDNA_intron_boundary i_start="44794" i_stop="44645" i_length="150"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="44644" e_stop="44299" e_length="346"/>
          </exon>
          <intron i_serial="18" don_prob="1.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="44298" i_stop="43596" i_length="703"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="43595" e_stop="43155" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62596" stop="62377"/>
              <exon start="61430" stop="61335"/>
              <exon start="61136" stop="61024"/>
              <exon start="60678" stop="60612"/>
              <exon start="59833" stop="59741"/>
              <exon start="59402" stop="59259"/>
              <exon start="58496" stop="58408"/>
              <exon start="52826" stop="52721"/>
              <exon start="52112" stop="52025"/>
              <exon start="51682" stop="51561"/>
              <exon start="50366" stop="50169"/>
              <exon start="49615" stop="49383"/>
              <exon start="48310" stop="48195"/>
              <exon start="47731" stop="47634"/>
              <exon start="47246" stop="47136"/>
              <exon start="46260" stop="46150"/>
              <exon start="45003" stop="44795"/>
              <exon start="44644" stop="44299"/>
              <exon start="43595" stop="43155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49574" stop="49383"/>
              <exon start="48310" stop="48195"/>
              <exon start="47731" stop="47634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49567" stop="49383"/>
              <exon start="48310" stop="48195"/>
              <exon start="47731" stop="47634"/>
              <exon start="47246" stop="47136"/>
              <exon start="46260" stop="46209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49502" stop="49383"/>
              <exon start="48310" stop="48195"/>
              <exon start="47731" stop="47634"/>
              <exon start="47246" stop="47136"/>
              <exon start="46260" stop="46150"/>
              <exon start="45003" stop="44939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49502" stop="49383"/>
              <exon start="48310" stop="48195"/>
              <exon start="47731" stop="47634"/>
              <exon start="47246" stop="47136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49502" stop="49383"/>
              <exon start="48310" stop="48195"/>
              <exon start="47731" stop="47634"/>
              <exon start="47246" stop="47230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298764" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCATTTTCATCTGAGACAAAATGGTAGAAGCTATGAGCAGAAGAAAAACACTGAATTTTCCGTTAATACTAACGGTGTTAACTATCCACTTTGTGATCGTCGCCGGCGAGTATTTCAAGCCGTTCAATGTCACCTACGATAACCGAGCTCTCATCATCGGCGGTAAACGCCGTATGCTTATCTCCGCCGGAATTCACTACCCTCGCGCCACTCCTGAG : ATGTGGCCCACATTGATAGCTAGGAGCAAAGAAGGTGGTGCAGATGTCATCGAGACTTATACATTTTGGAATGGTCATGAGCCAACCAGGGGACAG : TACAATTTTGAAGGAAGATATGATATTGTCAAGTTTGCAAAGCTAGTCGGATCTCATGGACTGTTCCTCTTTATTCGAATAGGTCCTTATGCCTGTGCAGAATGGAACTTCGG : GGGATTCCCCATATGGCTTCGTGATATACCTGGAATAGAATTTCGAACAGATAATGCACCATTCAAG : GAGGAGATGGAGCGCTATGTTAAAAAGATAGTTGATCTTATGATATCTGAGTCGCTCTTTTCGTGGCAAGGTGGTCCTATCATTTTGCTGCAG : ATTGAAAATGAATATGGAAATGTTGAAAGCTCATTCGGTCCCAAGGGGAAGTTATATATGAAATGGGCTGCTGAAATGGCTGTTGGTCTTGGTGCTGGTGTTCCATGGGTCATGTGCAGGCAAACTGATGCTCCAGAATACATC : ATAGATACTTGTAATGCATACTATTGTGATGGGTTCACGCCGAATTCCGAGAAGAAACCGAAAATTTGGACTGAGAATTGGAATGGATG : GTTTGCAGATTGGGGTGAAAGACTTCCATATAGACCTTCCGAGGATATTGCATTTGCAATTGCTCGTTTCTTTCAACGTGGGGGCAGCTTACAGAACTATTATATG : TATTTTGGTGGGACAAATTTTGGCCGGACTGCTGGTGGCCCAACTCAAATCACTAGCTATGATTATGATGCTCCACTGGATGAATATG : GACTACTACGTCAACCTAAATGGGGCCATTTGAAGGATCTGCATGCTGCTATAAAGCTTTGTGAACCAGCTCTTGTTGCTGCTGATTCACCTCAGTATATTAAACTGGGACCAAAACAGGAG : GCACATGTCTATCGTGGAACATCCAACAACATTGGCCAATATATGTCCTTAAATGAAGGCATATGCGCAGCATTTATTGCAAATATTGATGAACATGAATCAGCAACAGTGAAATTTTACGGTCAAGAGTTCACTTTACCTCCATGGTCAGTGAGTATTCTGCCAGATTGCAGAAATACAGCTTTCAACACAGCTAAG : GTGGGGGCACAAACTTCAATCAAAACAGTGGGCTCAGATTCTGTTTCAGTTGGGAATAATTCTTTGTTTCTACAAGTAATCACTAAAAGCAAGCTCGAAAGTTTTTCACAATCTTGGATGACATTGAAGGAGCCACTTGGTGTGTGGGGTGACAAGAATTTCACTTCTAAAGGAATACTGGAGCATCTGAATGTGACAAAAGACCAGTCTGATTACCTGTGGTATCTGACCAG : GATATATATTTCTGATGATGACATCTCATTTTGGGAGGAAAATGATGTTAGTCCAACAATTGATATTGATAGCATGCGTGATTTTGTTCGCATTTTTGTTAATGGGCAGCTTGCAG : GTAGTGTGAAAGGCAAATGGATCAAGGTGGTTCAACCTGTTAAGCTGGTTCAGGGATACAACGACATACTGCTATTATCTGAGACGGTGGGATTGCAG : AATTATGGTGCCTTCTTGGAGAAGGATGGGGCAGGTTTTAAAGGTCAGATAAAGCTTACAGGATGCAAAAGCGGGGATATCAATCTCACAACATCTTTATGGACCTACCAG : GTGGGGCTTAGAGGCGAATTCCTGGAAGTATATGATGTCAATAGTACTGAAAGTGCAGGATGGACTGAGTTTCCCACTGGTACAACTCCGTCAGTCTTTTCGTGGTACAAG : ACAAAGTTTGATGCCCCAGGCGGGACAGATCCAGTTGCTCTTGATTTTAGTAGCATGGGAAAAGGTCAGGCATGGGTTAATGGCCACCATGTAGGAAGATATTGGACTTTGGTTGCACCAAATAATGGATGTGGAAGAACTTGTGATTATCGTGGTGCTTACCACTCTGATAAATGTAGGACAAACTGTGGAGAGATTACTCAGGCCTG : GTACCATATACCTAGATCATGGCTAAAGACATTAAATAATGTACTAGTTATCTTTGAAGAAACAGATAAAACTCCGTTTGATATTTCCATTTCTACGCGTTCTACTGAAACCATTTGTGCTCAAGTATCGGAAAAGCACTATCCACCTCTACATAAGTGGTCTCATTCGGAGTTTGACAGAAAGTTGTCTCTGATGGATAAAACACCAGAAATGCACTTGCAGTGTGACGAAGGACATACAATCTCTTCTATTGAATTTGCAAGCTATGGAAGTCCGAATGGCAGCTGTCAAAAGTTCTCACAAGGAAAATGCCATGCTGCAAATTCCTTGTCTGTTGTATCTCAG : GCTTGTATAGGAAGAACTAGTTGCAGCATTGGCATTTCCAATGGTGTATTTGGAGATCCATGTCGACACGTTGTGAAGAGTTTGGCTGTTCAAGCAAAATGCTCACCACCACCAGACCTCAGCACTTCAGCTTCCTCGTGAGGAGACTCTGGTAACACGTTAACCTTTTAGAACGAAACGATCCCTTAAAGTCCACTCGTTCCCCTGCCCCCGAGCCCTCTGCTACATTTCTCAGATCGCATCGTTACAATCAGGCGGAGAAAACGTACATGGACGATTTTACTTGTAAATATTTGGTTACTGTATATAAAATGAAAGGAATAATGTTGCTTATGCATATGAGCTGCAAATTATATGACAAAGTAACAAATGAAAATAGAAAACTCCTGTCTGTCAAAGAATTTTAACAACACCATTTATTAAAAGTTAGTTAACATGATT</gDNA_template>
            <first_frame> I  H  F  H  L  R  Q  N  G  R  S  Y  E  Q  K  K  N  T  E  F  S  V  N  T  N  G  V  N  Y  P  L  C  D  R  R  R  R  V  F  Q  A  V  Q  C  H  L  R  *  P  S  S  H  H  R  R  *  T  P  Y  A  Y  L  R  R  N  S  L  P  S  R  H  S  *   : D  V  A  H  I  D  S  *  E  Q  R  R  W  C  R  C  H  R  D  L  Y  I  L  E  W  S  *  A  N  Q  G  T   : V  Q  F  *  R  K  I  *  Y  C  Q  V  C  K  A  S  R  I  S  W  T  V  P  L  Y  S  N  R  S  L  C  L  C  R  M  E  L  R  :  G  I  P  H  M  A  S  *  Y  T  W  N  R  I  S  N  R  *  C  T  I  Q   : G  G  D  G  A  L  C  *  K  D  S  *  S  Y  D  I  *  V  A  L  F  V  A  R  W  S  Y  H  F  A  A   : D  *  K  *  I  W  K  C  *  K  L  I  R  S  Q  G  E  V  I  Y  E  M  G  C  *  N  G  C  W  S  W  C  W  C  S  M  G  H  V  Q  A  N  *  C  S  R  I  H   : H  R  Y  L  *  C  I  L  L  *  W  V  H  A  E  F  R  E  E  T  E  N  L  D  *  E  L  E  W  M  :  V  C  R  L  G  *  K  T  S  I  *  T  F  R  G  Y  C  I  C  N  C  S  F  L  S  T  W  G  Q  L  T  E  L  L  Y   : V  F  W  W  D  K  F  W  P  D  C  W  W  P  N  S  N  H  *  L  *  L  *  C  S  T  G  *  I  W :   T  T  T  S  T  *  M  G  P  F  E  G  S  A  C  C  Y  K  A  L  *  T  S  S  C  C  C  *  F  T  S  V  Y  *  T  G  T  K  T  G   : G  T  C  L  S  W  N  I  Q  Q  H  W  P  I  Y  V  L  K  *  R  H  M  R  S  I  Y  C  K  Y  *  *  T  *  I  S  N  S  E  I  L  R  S  R  V  H  F  T  S  M  V  S  E  Y  S  A  R  L  Q  K  Y  S  F  Q  H  S  *   : G  G  G  T  N  F  N  Q  N  S  G  L  R  F  C  F  S  W  E  *  F  F  V  S  T  S  N  H  *  K  Q  A  R  K  F  F  T  I  L  D  D  I  E  G  A  T  W  C  V  G  *  Q  E  F  H  F  *  R  N  T  G  A  S  E  C  D  K  R  P  V  *  L  P  V  V  S  D  Q  :  D  I  Y  F  *  *  *  H  L  I  L  G  G  K  *  C  *  S  N  N  *  Y  *  *  H  A  *  F  C  S  H  F  C  *  W  A  A  C  R :   *  C  E  R  Q  M  D  Q  G  G  S  T  C  *  A  G  S  G  I  Q  R  H  T  A  I  I  *  D  G  G  I  A   : E  L  W  C  L  L  G  E  G  W  G  R  F  *  R  S  D  K  A  Y  R  M  Q  K  R  G  Y  Q  S  H  N  I  F  M  D  L  P   : G  G  A  *  R  R  I  P  G  S  I  *  C  Q  *  Y  *  K  C  R  M  D  *  V  S  H  W  Y  N  S  V  S  L  F  V  V  Q   : D  K  V  *  C  P  R  R  D  R  S  S  C  S  *  F  *  *  H  G  K  R  S  G  M  G  *  W  P  P  C  R  K  I  L  D  F  G  C  T  K  *  W  M  W  K  N  L  *  L  S  W  C  L  P  L  *  *  M  *  D  K  L  W  R  D  Y  S  G  L  :  V  P  Y  T  *  I  M  A  K  D  I  K  *  C  T  S  Y  L  *  R  N  R  *  N  S  V  *  Y  F  H  F  Y  A  F  Y  *  N  H  L  C  S  S  I  G  K  A  L  S  T  S  T  *  V  V  S  F  G  V  *  Q  K  V  V  S  D  G  *  N  T  R  N  A  L  A  V  *  R  R  T  Y  N  L  F  Y  *  I  C  K  L  W  K  S  E  W  Q  L  S  K  V  L  T  R  K  M  P  C  C  K  F  L  V  C  C  I  S   : G  L  Y  R  K  N  *  L  Q  H  W  H  F  Q  W  C  I  W  R  S  M  S  T  R  C  E  E  F  G  C  S  S  K  M  L  T  T  T  R  P  Q  H  F  S  F  L  V  R  R  L  W  *  H  V  N  L  L  E  R  N  D  P  L  K  S  T  R  S  P  A  P  E  P  S  A  T  F  L  R  S  H  R  Y  N  Q  A  E  K  T  Y  M  D  D  F  T  C  K  Y  L  V  T  V  Y  K  M  K  G  I  M  L  L  M  H  M  S  C  K  L  Y  D  K  V  T  N  E  N  R  K  L  L  S  V  K  E  F  *  Q  H  H  L  L  K  V  S  *  H  D  </first_frame>
            <second_frame>  S  I  F  I  *  D  K  M  V  E  A  M  S  R  R  K  T  L  N  F  P  L  I  L  T  V  L  T  I  H  F  V  I  V  A  G  E  Y  F  K  P  F  N  V  T  Y  D  N  R  A  L  I  I  G  G  K  R  R  M  L  I  S  A  G  I  H  Y  P  R  A  T  P  E  :  M  W  P  T  L  I  A  R  S  K  E  G  G  A  D  V  I  E  T  Y  T  F  W  N  G  H  E  P  T  R  G  Q  :  Y  N  F  E  G  R  Y  D  I  V  K  F  A  K  L  V  G  S  H  G  L  F  L  F  I  R  I  G  P  Y  A  C  A  E  W  N  F  G :   G  F  P  I  W  L  R  D  I  P  G  I  E  F  R  T  D  N  A  P  F  K  :  E  E  M  E  R  Y  V  K  K  I  V  D  L  M  I  S  E  S  L  F  S  W  Q  G  G  P  I  I  L  L  Q  :  I  E  N  E  Y  G  N  V  E  S  S  F  G  P  K  G  K  L  Y  M  K  W  A  A  E  M  A  V  G  L  G  A  G  V  P  W  V  M  C  R  Q  T  D  A  P  E  Y  I  :  I  D  T  C  N  A  Y  Y  C  D  G  F  T  P  N  S  E  K  K  P  K  I  W  T  E  N  W  N  G  W :   F  A  D  W  G  E  R  L  P  Y  R  P  S  E  D  I  A  F  A  I  A  R  F  F  Q  R  G  G  S  L  Q  N  Y  Y  M  :  Y  F  G  G  T  N  F  G  R  T  A  G  G  P  T  Q  I  T  S  Y  D  Y  D  A  P  L  D  E  Y   : G  L  L  R  Q  P  K  W  G  H  L  K  D  L  H  A  A  I  K  L  C  E  P  A  L  V  A  A  D  S  P  Q  Y  I  K  L  G  P  K  Q  E  :  A  H  V  Y  R  G  T  S  N  N  I  G  Q  Y  M  S  L  N  E  G  I  C  A  A  F  I  A  N  I  D  E  H  E  S  A  T  V  K  F  Y  G  Q  E  F  T  L  P  P  W  S  V  S  I  L  P  D  C  R  N  T  A  F  N  T  A  K  :  V  G  A  Q  T  S  I  K  T  V  G  S  D  S  V  S  V  G  N  N  S  L  F  L  Q  V  I  T  K  S  K  L  E  S  F  S  Q  S  W  M  T  L  K  E  P  L  G  V  W  G  D  K  N  F  T  S  K  G  I  L  E  H  L  N  V  T  K  D  Q  S  D  Y  L  W  Y  L  T  R :   I  Y  I  S  D  D  D  I  S  F  W  E  E  N  D  V  S  P  T  I  D  I  D  S  M  R  D  F  V  R  I  F  V  N  G  Q  L  A   : G  S  V  K  G  K  W  I  K  V  V  Q  P  V  K  L  V  Q  G  Y  N  D  I  L  L  L  S  E  T  V  G  L  Q  :  N  Y  G  A  F  L  E  K  D  G  A  G  F  K  G  Q  I  K  L  T  G  C  K  S  G  D  I  N  L  T  T  S  L  W  T  Y  Q  :  V  G  L  R  G  E  F  L  E  V  Y  D  V  N  S  T  E  S  A  G  W  T  E  F  P  T  G  T  T  P  S  V  F  S  W  Y  K  :  T  K  F  D  A  P  G  G  T  D  P  V  A  L  D  F  S  S  M  G  K  G  Q  A  W  V  N  G  H  H  V  G  R  Y  W  T  L  V  A  P  N  N  G  C  G  R  T  C  D  Y  R  G  A  Y  H  S  D  K  C  R  T  N  C  G  E  I  T  Q  A  W :   Y  H  I  P  R  S  W  L  K  T  L  N  N  V  L  V  I  F  E  E  T  D  K  T  P  F  D  I  S  I  S  T  R  S  T  E  T  I  C  A  Q  V  S  E  K  H  Y  P  P  L  H  K  W  S  H  S  E  F  D  R  K  L  S  L  M  D  K  T  P  E  M  H  L  Q  C  D  E  G  H  T  I  S  S  I  E  F  A  S  Y  G  S  P  N  G  S  C  Q  K  F  S  Q  G  K  C  H  A  A  N  S  L  S  V  V  S  Q  :  A  C  I  G  R  T  S  C  S  I  G  I  S  N  G  V  F  G  D  P  C  R  H  V  V  K  S  L  A  V  Q  A  K  C  S  P  P  P  D  L  S  T  S  A  S  S  *  G  D  S  G  N  T  L  T  F  *  N  E  T  I  P  *  S  P  L  V  P  L  P  P  S  P  L  L  H  F  S  D  R  I  V  T  I  R  R  R  K  R  T  W  T  I  L  L  V  N  I  W  L  L  Y  I  K  *  K  E  *  C  C  L  C  I  *  A  A  N  Y  M  T  K  *  Q  M  K  I  E  N  S  C  L  S  K  N  F  N  N  T  I  Y  *  K  L  V  N  M  I </second_frame>
            <third_frame>   P  F  S  S  E  T  K  W  *  K  L  *  A  E  E  K  H  *  I  F  R  *  Y  *  R  C  *  L  S  T  L  *  S  S  P  A  S  I  S  S  R  S  M  S  P  T  I  T  E  L  S  S  S  A  V  N  A  V  C  L  S  P  P  E  F  T  T  L  A  P  L  L  R :   C  G  P  H  *  *  L  G  A  K  K  V  V  Q  M  S  S  R  L  I  H  F  G  M  V  M  S  Q  P  G  D  S :   T  I  L  K  E  D  M  I  L  S  S  L  Q  S  *  S  D  L  M  D  C  S  S  L  F  E  *  V  L  M  P  V  Q  N  G  T  S   : G  D  S  P  Y  G  F  V  I  Y  L  E  *  N  F  E  Q  I  M  H  H  S  R :   R  R  W  S  A  M  L  K  R  *  L  I  L  *  Y  L  S  R  S  F  R  G  K  V  V  L  S  F  C  C  R :   L  K  M  N  M  E  M  L  K  A  H  S  V  P  R  G  S  Y  I  *  N  G  L  L  K  W  L  L  V  L  V  L  V  F  H  G  S  C  A  G  K  L  M  L  Q  N  T  S :   *  I  L  V  M  H  T  I  V  M  G  S  R  R  I  P  R  R  N  R  K  F  G  L  R  I  G  M  D   : G  L  Q  I  G  V  K  D  F  H  I  D  L  P  R  I  L  H  L  Q  L  L  V  S  F  N  V  G  A  A  Y  R  T  I  I  C :   I  L  V  G  Q  I  L  A  G  L  L  V  A  Q  L  K  S  L  A  M  I  M  M  L  H  W  M  N  M  :  D  Y  Y  V  N  L  N  G  A  I  *  R  I  C  M  L  L  *  S  F  V  N  Q  L  L  L  L  L  I  H  L  S  I  L  N  W  D  Q  N  R  R :   H  M  S  I  V  E  H  P  T  T  L  A  N  I  C  P  *  M  K  A  Y  A  Q  H  L  L  Q  I  L  M  N  M  N  Q  Q  Q  *  N  F  T  V  K  S  S  L  Y  L  H  G  Q  *  V  F  C  Q  I  A  E  I  Q  L  S  T  Q  L  R :   W  G  H  K  L  Q  S  K  Q  W  A  Q  I  L  F  Q  L  G  I  I  L  C  F  Y  K  *  S  L  K  A  S  S  K  V  F  H  N  L  G  *  H  *  R  S  H  L  V  C  G  V  T  R  I  S  L  L  K  E  Y  W  S  I  *  M  *  Q  K  T  S  L  I  T  C  G  I  *  P   : G  Y  I  F  L  M  M  T  S  H  F  G  R  K  M  M  L  V  Q  Q  L  I  L  I  A  C  V  I  L  F  A  F  L  L  M  G  S  L  Q  :  V  V  *  K  A  N  G  S  R  W  F  N  L  L  S  W  F  R  D  T  T  T  Y  C  Y  Y  L  R  R  W  D  C  R :   I  M  V  P  S  W  R  R  M  G  Q  V  L  K  V  R  *  S  L  Q  D  A  K  A  G  I  S  I  S  Q  H  L  Y  G  P  T  R :   W  G  L  E  A  N  S  W  K  Y  M  M  S  I  V  L  K  V  Q  D  G  L  S  F  P  L  V  Q  L  R  Q  S  F  R  G  T  R :   Q  S  L  M  P  Q  A  G  Q  I  Q  L  L  L  I  L  V  A  W  E  K  V  R  H  G  L  M  A  T  M  *  E  D  I  G  L  W  L  H  Q  I  M  D  V  E  E  L  V  I  I  V  V  L  T  T  L  I  N  V  G  Q  T  V  E  R  L  L  R  P   : G  T  I  Y  L  D  H  G  *  R  H  *  I  M  Y  *  L  S  L  K  K  Q  I  K  L  R  L  I  F  P  F  L  R  V  L  L  K  P  F  V  L  K  Y  R  K  S  T  I  H  L  Y  I  S  G  L  I  R  S  L  T  E  S  C  L  *  W  I  K  H  Q  K  C  T  C  S  V  T  K  D  I  Q  S  L  L  L  N  L  Q  A  M  E  V  R  M  A  A  V  K  S  S  H  K  E  N  A  M  L  Q  I  P  C  L  L  Y  L  R :   L  V  *  E  E  L  V  A  A  L  A  F  P  M  V  Y  L  E  I  H  V  D  T  L  *  R  V  W  L  F  K  Q  N  A  H  H  H  Q  T  S  A  L  Q  L  P  R  E  E  T  L  V  T  R  *  P  F  R  T  K  R  S  L  K  V  H  S  F  P  C  P  R  A  L  C  Y  I  S  Q  I  A  S  L  Q  S  G  G  E  N  V  H  G  R  F  Y  L  *  I  F  G  Y  C  I  *  N  E  R  N  N  V  A  Y  A  Y  E  L  Q  I  I  *  Q  S  N  K  *  K  *  K  T  P  V  C  Q  R  I  L  T  T  P  F  I  K  S  *  L  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62580" stop="62377"/>
                    <exon start="61430" stop="61335"/>
                    <exon start="61136" stop="61024"/>
                    <exon start="60678" stop="60612"/>
                    <exon start="59833" stop="59741"/>
                    <exon start="59402" stop="59259"/>
                    <exon start="58496" stop="58408"/>
                    <exon start="52826" stop="52721"/>
                    <exon start="52112" stop="52025"/>
                    <exon start="51682" stop="51561"/>
                    <exon start="50366" stop="50169"/>
                    <exon start="49615" stop="49383"/>
                    <exon start="48310" stop="48195"/>
                    <exon start="47731" stop="47634"/>
                    <exon start="47246" stop="47136"/>
                    <exon start="46260" stop="46150"/>
                    <exon start="45003" stop="44795"/>
                    <exon start="44644" stop="44299"/>
                    <exon start="43595" stop="43455"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2682</number_coding_nucleotides>
                  <number_encoded_amino_acids>894</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKMVEAMSRRKTLNFPLILTVLTIHFVIVAGEYFKPFNVTYDNRALIIGGKRRMLISAGIHYPRATPEMWPTLIARSKEGGADVIETYTFWNGHEPTRGQYNFEGRYDIVKFAKLVGSHGLFLFIRIGPYACAEWNFGGFPIWLRDIPGIEFRTDNAPFKEEMERYVKKIVDLMISESLFSWQGGPIILLQIENEYGNVESSFGPKGKLYMKWAAEMAVGLGAGVPWVMCRQTDAPEYIIDTCNAYYCDGFTPNSEKKPKIWTENWNGWFADWGERLPYRPSEDIAFAIARFFQRGGSLQNYYMYFGGTNFGRTAGGPTQITSYDYDAPLDEYGLLRQPKWGHLKDLHAAIKLCEPALVAADSPQYIKLGPKQEAHVYRGTSNNIGQYMSLNEGICAAFIANIDEHESATVKFYGQEFTLPPWSVSILPDCRNTAFNTAKVGAQTSIKTVGSDSVSVGNNSLFLQVITKSKLESFSQSWMTLKEPLGVWGDKNFTSKGILEHLNVTKDQSDYLWYLTRIYISDDDISFWEENDVSPTIDIDSMRDFVRIFVNGQLAGSVKGKWIKVVQPVKLVQGYNDILLLSETVGLQNYGAFLEKDGAGFKGQIKLTGCKSGDINLTTSLWTYQVGLRGEFLEVYDVNSTESAGWTEFPTGTTPSVFSWYKTKFDAPGGTDPVALDFSSMGKGQAWVNGHHVGRYWTLVAPNNGCGRTCDYRGAYHSDKCRTNCGEITQAWYHIPRSWLKTLNNVLVIFEETDKTPFDISISTRSTETICAQVSEKHYPPLHKWSHSEFDRKLSLMDKTPEMHLQCDEGHTISSIEFASYGSPNGSCQKFSQGKCHAANSLSVVSQACIGRTSCSIGISNGVFGDPCRHVVKSLAVQAKCSPPPDLSTSASS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43440" stop="43189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVNLLERNDPLKSTRSPAPEPSATFLRSHRYNQAEKTYMDDFTCKYLVTVYKMKGIMLLMHMSCKLYDKVTNENRKLLSVKEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="69913" PGL_stop="69470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69913" e_stop="69470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69913" e_stop="69470" e_length="444"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69913" stop="69470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224155" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69879" stop="69470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224248" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTGATGGTCTCTCCGATTATACTCGAGCTTCTGAAGGAAGAATATCTCAACATTCCTCGATTATCTGCATTCCACTCTGTCTCCGCCACTGCCATAGGCTTTTTCTGTTCGCTGATGATCGTGTGGACGAGGGCCGTTAGTACTGATTTGGGGATTTTGTACGGACTCTGCTCACTTTCTATTTCTCTTGGAGTACAAGATTTCGATTACCGATGGCCGACTCAGGTAGAGTTCGGCGTTTCATTGTTGATGATTCTACTTCGACTTTACTTGGAGACGCCGCGGCGGCGGCGGCGTGCGGCTGGTAGAGTGTGATGACTGATTAGACCAGAAAAAAAAAACTAACTGTTTAAATTCTAATCTAGTCTAATTAGTTTTACTAATTACAAAAGTTGATGTTTAATGGACTATTAAGTATAGTTATAGCTAATTAGTTTAATTA</gDNA_template>
            <first_frame> D  *  W  S  L  R  L  Y  S  S  F  *  R  K  N  I  S  T  F  L  D  Y  L  H  S  T  L  S  P  P  L  P  *  A  F  S  V  R  *  *  S  C  G  R  G  P  L  V  L  I  W  G  F  C  T  D  S  A  H  F  L  F  L  L  E  Y  K  I  S  I  T  D  G  R  L  R  *  S  S  A  F  H  C  *  *  F  Y  F  D  F  T  W  R  R  R  G  G  G  G  V  R  L  V  E  C  D  D  *  L  D  Q  K  K  K  T  N  C  L  N  S  N  L  V  *  L  V  L  L  I  T  K  V  D  V  *  W  T  I  K  Y  S  Y  S  *  L  V  *  L </first_frame>
            <second_frame>  T  D  G  L  S  D  Y  T  R  A  S  E  G  R  I  S  Q  H  S  S  I  I  C  I  P  L  C  L  R  H  C  H  R  L  F  L  F  A  D  D  R  V  D  E  G  R  *  Y  *  F  G  D  F  V  R  T  L  L  T  F  Y  F  S  W  S  T  R  F  R  L  P  M  A  D  S  G  R  V  R  R  F  I  V  D  D  S  T  S  T  L  L  G  D  A  A  A  A  A  A  C  G  W  *  S  V  M  T  D  *  T  R  K  K  K  L  T  V  *  I  L  I  *  S  N  *  F  Y  *  L  Q  K  L  M  F  N  G  L  L  S  I  V  I  A  N  *  F  N   </second_frame>
            <third_frame>   L  M  V  S  P  I  I  L  E  L  L  K  E  E  Y  L  N  I  P  R  L  S  A  F  H  S  V  S  A  T  A  I  G  F  F  C  S  L  M  I  V  W  T  R  A  V  S  T  D  L  G  I  L  Y  G  L  C  S  L  S  I  S  L  G  V  Q  D  F  D  Y  R  W  P  T  Q  V  E  F  G  V  S  L  L  M  I  L  L  R  L  Y  L  E  T  P  R  R  R  R  R  A  A  G  R  V  *  *  L  I  R  P  E  K  K  N  *  L  F  K  F  *  S  S  L  I  S  F  T  N  Y  K  S  *  C  L  M  D  Y  *  V  *  L  *  L  I  S  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69911" stop="69597"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMVSPIILELLKEEYLNIPRLSAFHSVSATAIGFFCSLMIVWTRAVSTDLGILYGLCSLSISLGVQDFDYRWPTQVEFGVSLLMILLRLYLETPRRRRRAAGRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="69611" PGL_stop="70469"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69611" e_stop="70469"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="69611" e_stop="70469" e_length="859"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69611" stop="70469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719981" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCACGCCGCCGCCGCCGCGGCGTCTCCAAGTAAAGTCGAAGTAGAATCATCAACAATGAAACGCCGAACTCTACCTGAGTCGGCCATCGGTAATCGAAATCTTGTACTCCAAGAGAAATAGAAAGTGAGCAGAGTCCGTACAAAATCCCCAAATCAGTACTAACGGCCCTCGTCCACACGATCATCAGCGAACAGAAAAAGCCTATGGCAGTGGCGGAGACAGAGTGGAATGCAGATAATCGAGGAATGTTGAGATATTCTTCCTTCAGAAGCTCGAGTATAATCGGAGAGACCATCAGTCCTATTCCGTCGAAGGCGGAAGTAAAGCGAGGCATAGTCATCACTGCCGGAAAAGGATTTCTATCGCGAAGGACCGATATGAGTCCGGTTAGAAGTAGCGGCATTGCTACGGTAGAAACGAACCACAACGCATGGATGCGAATAACAGCCATGGCTAGGAGAAAGAAAACCAACGCGAAAAACGACCAGATCTTTTGCTCTGTTCTCATTTTCTGCTAGTGTTTAGAGAAATAGAAGGGAGTAGAAATGTGATCGGAACTAAGCGAACTCTCAAAACTCCGTCGGCGCAGCTCCGGCCTCTTCCCGGTTGCCGATTGCGCGGCGCCGATTGAGGAAGAAGGGATTGCTTTGCTTATTGAGACTGGGACCCCCAATTCCTGTGCCGATTATGCCCATGAAGTAAAACAGTGCCCGTGTTTTTCCTAATTTACCCTCTAGTTTTATTTTATTTTTATATAACTAGAGTTAGTAAAAATTAAATCAATGATGAAACTGAATAGAAAAAAATGTTATTAATTATATGTATAGTGACAGAGTTAGAATTTTGATCAAGGAAT</gDNA_template>
            <first_frame> P  H  A  A  A  A  A  A  S  P  S  K  V  E  V  E  S  S  T  M  K  R  R  T  L  P  E  S  A  I  G  N  R  N  L  V  L  Q  E  K  *  K  V  S  R  V  R  T  K  S  P  N  Q  Y  *  R  P  S  S  T  R  S  S  A  N  R  K  S  L  W  Q  W  R  R  Q  S  G  M  Q  I  I  E  E  C  *  D  I  L  P  S  E  A  R  V  *  S  E  R  P  S  V  L  F  R  R  R  R  K  *  S  E  A  *  S  S  L  P  E  K  D  F  Y  R  E  G  P  I  *  V  R  L  E  V  A  A  L  L  R  *  K  R  T  T  T  H  G  C  E  *  Q  P  W  L  G  E  R  K  P  T  R  K  T  T  R  S  F  A  L  F  S  F  S  A  S  V  *  R  N  R  R  E  *  K  C  D  R  N  *  A  N  S  Q  N  S  V  G  A  A  P  A  S  S  R  L  P  I  A  R  R  R  L  R  K  K  G  L  L  C  L  L  R  L  G  P  P  I  P  V  P  I  M  P  M  K  *  N  S  A  R  V  F  P  N  L  P  S  S  F  I  L  F  L  Y  N  *  S  *  *  K  L  N  Q  *  *  N  *  I  E  K  N  V  I  N  Y  M  Y  S  D  R  V  R  I  L  I  K  E  </first_frame>
            <second_frame>  R  T  P  P  P  P  R  R  L  Q  V  K  S  K  *  N  H  Q  Q  *  N  A  E  L  Y  L  S  R  P  S  V  I  E  I  L  Y  S  K  R  N  R  K  *  A  E  S  V  Q  N  P  Q  I  S  T  N  G  P  R  P  H  D  H  Q  R  T  E  K  A  Y  G  S  G  G  D  R  V  E  C  R  *  S  R  N  V  E  I  F  F  L  Q  K  L  E  Y  N  R  R  D  H  Q  S  Y  S  V  E  G  G  S  K  A  R  H  S  H  H  C  R  K  R  I  S  I  A  K  D  R  Y  E  S  G  *  K  *  R  H  C  Y  G  R  N  E  P  Q  R  M  D  A  N  N  S  H  G  *  E  K  E  N  Q  R  E  K  R  P  D  L  L  L  C  S  H  F  L  L  V  F  R  E  I  E  G  S  R  N  V  I  G  T  K  R  T  L  K  T  P  S  A  Q  L  R  P  L  P  G  C  R  L  R  G  A  D  *  G  R  R  D  C  F  A  Y  *  D  W  D  P  Q  F  L  C  R  L  C  P  *  S  K  T  V  P  V  F  F  L  I  Y  P  L  V  L  F  Y  F  Y  I  T  R  V  S  K  N  *  I  N  D  E  T  E  *  K  K  M  L  L  I  I  C  I  V  T  E  L  E  F  *  S  R  N </second_frame>
            <third_frame>   A  R  R  R  R  R  G  V  S  K  *  S  R  S  R  I  I  N  N  E  T  P  N  S  T  *  V  G  H  R  *  S  K  S  C  T  P  R  E  I  E  S  E  Q  S  P  Y  K  I  P  K  S  V  L  T  A  L  V  H  T  I  I  S  E  Q  K  K  P  M  A  V  A  E  T  E  W  N  A  D  N  R  G  M  L  R  Y  S  S  F  R  S  S  S  I  I  G  E  T  I  S  P  I  P  S  K  A  E  V  K  R  G  I  V  I  T  A  G  K  G  F  L  S  R  R  T  D  M  S  P  V  R  S  S  G  I  A  T  V  E  T  N  H  N  A  W  M  R  I  T  A  M  A  R  R  K  K  T  N  A  K  N  D  Q  I  F  C  S  V  L  I  F  C  *  C  L  E  K  *  K  G  V  E  M  *  S  E  L  S  E  L  S  K  L  R  R  R  S  S  G  L  F  P  V  A  D  C  A  A  P  I  E  E  E  G  I  A  L  L  I  E  T  G  T  P  N  S  C  A  D  Y  A  H  E  V  K  Q  C  P  C  F  S  *  F  T  L  *  F  Y  F  I  F  I  *  L  E  L  V  K  I  K  S  M  M  K  L  N  R  K  K  C  Y  *  L  Y  V  *  *  Q  S  *  N  F  D  Q  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69706" stop="70131"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKSCTPREIESEQSPYKIPKSVLTALVHTIISEQKKPMAVAETEWNADNRGMLRYSSFRSSSIIGETISPIPSKAEVKRGIVITAGKGFLSRRTDMSPVRSSGIATVETNHNAWMRITAMARRKKTNAKNDQIFCSVLIFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="75889" PGL_stop="71462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75889" e_stop="75806"/>
            <exon e_start="75543" e_stop="75310"/>
            <exon e_start="74397" e_stop="73891"/>
            <exon e_start="73705" e_stop="73543"/>
            <exon e_start="73386" e_stop="72849"/>
            <exon e_start="71602" e_stop="71584"/>
            <exon e_start="71466" e_stop="71462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.952" e_score="0.940"/>
          <exon-intron don_prob="0.978" acc_prob="0.975" e_score="0.996"/>
          <exon-intron don_prob="0.902" acc_prob="0.816" e_score="0.986"/>
          <exon-intron don_prob="0.994" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.976"/>
          <exon-intron don_prob="0.651" acc_prob="0.703" e_score="0.789"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="75889" e_stop="75806" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.952">
            <gDNA_intron_boundary i_start="75805" i_stop="75544" i_length="262"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="75543" e_stop="75310" e_length="234"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.975">
            <gDNA_intron_boundary i_start="75309" i_stop="74398" i_length="912"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="74397" e_stop="73891" e_length="507"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.816">
            <gDNA_intron_boundary i_start="73890" i_stop="73706" i_length="185"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73705" e_stop="73543" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.966">
            <gDNA_intron_boundary i_start="73542" i_stop="73387" i_length="156"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="73386" e_stop="72849" e_length="538"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72848" i_stop="71603" i_length="1246"/>
          </intron>
          <exon e_serial="6" e_score="0.789">
            <gDNA_exon_boundary e_start="71602" e_stop="71584" e_length="19"/>
          </exon>
          <intron i_serial="6" don_prob="0.651" acc_prob="0.703">
            <gDNA_intron_boundary i_start="71583" i_stop="71467" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="0.800">
            <gDNA_exon_boundary e_start="71466" e_stop="71462" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75889" stop="75806"/>
              <exon start="75543" stop="75310"/>
              <exon start="74397" stop="73891"/>
              <exon start="73705" stop="73678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74234" stop="73891"/>
              <exon start="73705" stop="73543"/>
              <exon start="73386" stop="73231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74234" stop="73945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73646" stop="73543"/>
              <exon start="73386" stop="72849"/>
              <exon start="71602" stop="71584"/>
              <exon start="71466" stop="71462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370242" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73321" stop="72850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243181" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCCGCTCACTCCAGTCAATTCTTGAGTTTAGTCGGTCCTGGTATCTGGGAGATAAACCACATTTATGGAGTGCTGCAGCACAG : GTTTTGGGGTTACTCATTGAAGTACTTAAAGATGGTTTCCAAAAGTATATTGATAGCCTTCTACCTGTTATGAGAAACATCTTGCAATCTGCTGTTAATGTTCTTACAAATAAGCAAGTGGATCTACCGAATGATGCAACAATTTCATCTTGGAAAGAAGCATATTATTCACTGGTTCTGTTTGAGAAGATATTAAATCAATTTCCTAAGTTGTGCTTCAGAAAGGATTTTGAG : GATCTGTGGGAAGCAATCTGTGAGTTGCTTTTGCATCCGCATCTGTGGTTGCGCAACATATCAAACCGTCTTGTGGCTTGCTACTTTGCCACTGTGACTGAGGCTTGTAAAGAAAACCTTGAACTGCCACAAGGAACTTACTTTTTGATGAGGCCAAGTAGACTTTTCTTCATAGCTACTTCTCTTTGTTGCCAACTGAAGGTGTTGCAGACTGATGATGCTGCCAGTGATCTCATTACTCAAAATCTTGTATTTTCAATTTGCTCTCTGCATTCATTCTTAGGAAAAACTGAATGTAAAGATAAGTTCTGGTCCACCATTGAACATGACGAGCAGGGTCTTCTACTTAAGGCTTTTCAACAGCTTGATTCAAGGAAAGGGAAAAACATCTATTTGTCTCTTGTGTCTGACCTTAGTGATCAAGAAGATGAAGGCCAGCGCTACTTGGTCATTTCTTATTTGCTTAAGACAATGGGAAAGATTTCCCTTCATGTGGAGGATATGCAG : ATGAGAATTATCTTCAATTGTTTCAAATCAGTTTCACCAAAGCTTATAGATCAGAGTAGATTGTTGTCCCCTGAAGGTGAGGTTGATTGCCAAAGCTTTGCATATCATATGCTGTTGCCCCTGTACAAAGTTTGTGAAGGATTTGCCGGAAAAGTTATATCAG : ACGACGTGAAACAACTGGCTGAAGGAGTGCGGGGGAGCATAAGCAATGTTATAGGAACACATATTTTTGTCCAAATCTACAGTCATATAAGGAAGAATATCAAATCGAAGAGGGATAAGAGGAAACAAGAAGAGAAGGTCATTGCTGTCGTCAATCCAATGAGAAACGCCAAGAGAAAGCTGCGGATCTCAGAAAAGCATAAAGCACACAAGAAGAGGAAAATGATGGCAATGAAGATGGGAAGATGGATGTAGTAGAATGTTTACTATTATAGGATCTATGGAGCATCGATCTTCGATAGCAGTAGCTTCTATAGAAATTTTTGTTTAATTTATGTAACCAAATTTTCCATTGTATAGTGGTGTAATATTTTGAGTTGCACTAAGCTTAGTTTAAAAAATTGAATCAAGTTTTTCAATGTATAGTGAATATAGTGTCTCTTTGATTAACCTACAATGCTATAGAACATTGTAAGAAATTGAACTCTGTAATTTATTGATTTTTAGTAATGGAGAGGAATCTTCTTCCTTTTTTTGGA : AATAACACCAAAAAAAAAA : AACAA</gDNA_template>
            <first_frame> P  R  S  L  Q  S  I  L  E  F  S  R  S  W  Y  L  G  D  K  P  H  L  W  S  A  A  A  Q  :  V  L  G  L  L  I  E  V  L  K  D  G  F  Q  K  Y  I  D  S  L  L  P  V  M  R  N  I  L  Q  S  A  V  N  V  L  T  N  K  Q  V  D  L  P  N  D  A  T  I  S  S  W  K  E  A  Y  Y  S  L  V  L  F  E  K  I  L  N  Q  F  P  K  L  C  F  R  K  D  F  E  :  D  L  W  E  A  I  C  E  L  L  L  H  P  H  L  W  L  R  N  I  S  N  R  L  V  A  C  Y  F  A  T  V  T  E  A  C  K  E  N  L  E  L  P  Q  G  T  Y  F  L  M  R  P  S  R  L  F  F  I  A  T  S  L  C  C  Q  L  K  V  L  Q  T  D  D  A  A  S  D  L  I  T  Q  N  L  V  F  S  I  C  S  L  H  S  F  L  G  K  T  E  C  K  D  K  F  W  S  T  I  E  H  D  E  Q  G  L  L  L  K  A  F  Q  Q  L  D  S  R  K  G  K  N  I  Y  L  S  L  V  S  D  L  S  D  Q  E  D  E  G  Q  R  Y  L  V  I  S  Y  L  L  K  T  M  G  K  I  S  L  H  V  E  D  M  Q  :  M  R  I  I  F  N  C  F  K  S  V  S  P  K  L  I  D  Q  S  R  L  L  S  P  E  G  E  V  D  C  Q  S  F  A  Y  H  M  L  L  P  L  Y  K  V  C  E  G  F  A  G  K  V  I  S   : D  D  V  K  Q  L  A  E  G  V  R  G  S  I  S  N  V  I  G  T  H  I  F  V  Q  I  Y  S  H  I  R  K  N  I  K  S  K  R  D  K  R  K  Q  E  E  K  V  I  A  V  V  N  P  M  R  N  A  K  R  K  L  R  I  S  E  K  H  K  A  H  K  K  R  K  M  M  A  M  K  M  G  R  W  M  *  *  N  V  Y  Y  Y  R  I  Y  G  A  S  I  F  D  S  S  S  F  Y  R  N  F  C  L  I  Y  V  T  K  F  S  I  V  *  W  C  N  I  L  S  C  T  K  L  S  L  K  N  *  I  K  F  F  N  V  *  *  I  *  C  L  F  D  *  P  T  M  L  *  N  I  V  R  N  *  T  L  *  F  I  D  F  *  *  W  R  G  I  F  F  L  F  L  E :   I  T  P  K  K  K  :  N   </first_frame>
            <second_frame>  P  A  H  S  S  Q  F  L  S  L  V  G  P  G  I  W  E  I  N  H  I  Y  G  V  L  Q  H  R :   F  W  G  Y  S  L  K  Y  L  K  M  V  S  K  S  I  L  I  A  F  Y  L  L  *  E  T  S  C  N  L  L  L  M  F  L  Q  I  S  K  W  I  Y  R  M  M  Q  Q  F  H  L  G  K  K  H  I  I  H  W  F  C  L  R  R  Y  *  I  N  F  L  S  C  A  S  E  R  I  L  R :   I  C  G  K  Q  S  V  S  C  F  C  I  R  I  C  G  C  A  T  Y  Q  T  V  L  W  L  A  T  L  P  L  *  L  R  L  V  K  K  T  L  N  C  H  K  E  L  T  F  *  *  G  Q  V  D  F  S  S  *  L  L  L  F  V  A  N  *  R  C  C  R  L  M  M  L  P  V  I  S  L  L  K  I  L  Y  F  Q  F  A  L  C  I  H  S  *  E  K  L  N  V  K  I  S  S  G  P  P  L  N  M  T  S  R  V  F  Y  L  R  L  F  N  S  L  I  Q  G  K  G  K  T  S  I  C  L  L  C  L  T  L  V  I  K  K  M  K  A  S  A  T  W  S  F  L  I  C  L  R  Q  W  E  R  F  P  F  M  W  R  I  C  R :   *  E  L  S  S  I  V  S  N  Q  F  H  Q  S  L  *  I  R  V  D  C  C  P  L  K  V  R  L  I  A  K  A  L  H  I  I  C  C  C  P  C  T  K  F  V  K  D  L  P  E  K  L  Y  Q  :  T  T  *  N  N  W  L  K  E  C  G  G  A  *  A  M  L  *  E  H  I  F  L  S  K  S  T  V  I  *  G  R  I  S  N  R  R  G  I  R  G  N  K  K  R  R  S  L  L  S  S  I  Q  *  E  T  P  R  E  S  C  G  S  Q  K  S  I  K  H  T  R  R  G  K  *  W  Q  *  R  W  E  D  G  C  S  R  M  F  T  I  I  G  S  M  E  H  R  S  S  I  A  V  A  S  I  E  I  F  V  *  F  M  *  P  N  F  P  L  Y  S  G  V  I  F  *  V  A  L  S  L  V  *  K  I  E  S  S  F  S  M  Y  S  E  Y  S  V  S  L  I  N  L  Q  C  Y  R  T  L  *  E  I  E  L  C  N  L  L  I  F  S  N  G  E  E  S  S  S  F  F  W   : K  *  H  Q  K  K  K :   T  </second_frame>
            <third_frame>   P  L  T  P  V  N  S  *  V  *  S  V  L  V  S  G  R  *  T  T  F  M  E  C  C  S  T   : G  F  G  V  T  H  *  S  T  *  R  W  F  P  K  V  Y  *  *  P  S  T  C  Y  E  K  H  L  A  I  C  C  *  C  S  Y  K  *  A  S  G  S  T  E  *  C  N  N  F  I  L  E  R  S  I  L  F  T  G  S  V  *  E  D  I  K  S  I  S  *  V  V  L  Q  K  G  F  *   : G  S  V  G  S  N  L  *  V  A  F  A  S  A  S  V  V  A  Q  H  I  K  P  S  C  G  L  L  L  C  H  C  D  *  G  L  *  R  K  P  *  T  A  T  R  N  L  L  F  D  E  A  K  *  T  F  L  H  S  Y  F  S  L  L  P  T  E  G  V  A  D  *  *  C  C  Q  *  S  H  Y  S  K  S  C  I  F  N  L  L  S  A  F  I  L  R  K  N  *  M  *  R  *  V  L  V  H  H  *  T  *  R  A  G  S  S  T  *  G  F  S  T  A  *  F  K  E  R  E  K  H  L  F  V  S  C  V  *  P  *  *  S  R  R  *  R  P  A  L  L  G  H  F  L  F  A  *  D  N  G  K  D  F  P  S  C  G  G  Y  A   : D  E  N  Y  L  Q  L  F  Q  I  S  F  T  K  A  Y  R  S  E  *  I  V  V  P  *  R  *  G  *  L  P  K  L  C  I  S  Y  A  V  A  P  V  Q  S  L  *  R  I  C  R  K  S  Y  I  R :   R  R  E  T  T  G  *  R  S  A  G  E  H  K  Q  C  Y  R  N  T  Y  F  C  P  N  L  Q  S  Y  K  E  E  Y  Q  I  E  E  G  *  E  E  T  R  R  E  G  H  C  C  R  Q  S  N  E  K  R  Q  E  K  A  A  D  L  R  K  A  *  S  T  Q  E  E  E  N  D  G  N  E  D  G  K  M  D  V  V  E  C  L  L  L  *  D  L  W  S  I  D  L  R  *  Q  *  L  L  *  K  F  L  F  N  L  C  N  Q  I  F  H  C  I  V  V  *  Y  F  E  L  H  *  A  *  F  K  K  L  N  Q  V  F  Q  C  I  V  N  I  V  S  L  *  L  T  Y  N  A  I  E  H  C  K  K  L  N  S  V  I  Y  *  F  L  V  M  E  R  N  L  L  P  F  F  G  :  N  N  T  K  K  K   : K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0176I09.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75889" stop="75806"/>
                    <exon start="75543" stop="75310"/>
                    <exon start="74397" stop="73891"/>
                    <exon start="73705" stop="73543"/>
                    <exon start="73386" stop="73133"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1239</number_coding_nucleotides>
                  <number_encoded_amino_acids>413</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRSLQSILEFSRSWYLGDKPHLWSAAAQVLGLLIEVLKDGFQKYIDSLLPVMRNILQSAVNVLTNKQVDLPNDATISSWKEAYYSLVLFEKILNQFPKLCFRKDFEDLWEAICELLLHPHLWLRNISNRLVACYFATVTEACKENLELPQGTYFLMRPSRLFFIATSLCCQLKVLQTDDAASDLITQNLVFSICSLHSFLGKTECKDKFWSTIEHDEQGLLLKAFQQLDSRKGKNIYLSLVSDLSDQEDEGQRYLVISYLLKTMGKISLHVEDMQMRIIFNCFKSVSPKLIDQSRLLSPEGEVDCQSFAYHMLLPLYKVCEGFAGKVISDDVKQLAEGVRGSISNVIGTHIFVQIYSHIRKNIKSKRDKRKQEEKVIAVVNPMRNAKRKLRISEKHKAHKKRKMMAMKMGRWM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 67 chains have been computed
$ 
$ memory statistics:
$ 170008 bytes spliced alignments in total
$ 45 spliced alignments have been stored
$ 3777 bytes was the average size of a spliced alignment
$ 18968 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1724 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 87 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 11:12:46
-->
