<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-03-22 22:00:24"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E393541" ref_strand="+" ref_description="SGN-E393541 [TUS-39-G2]">
      <seq>ttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttgtgtaattgaggttgagcagtcattttggttgccatgagggtgctctcaaccagtggactagttcttttggaattccacccagtgtttggtatttgctttggtcttgattgatttctatttgctccaagaaaaactctaaagacttttgataaataatgattgggttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="94" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="243" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="300" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="339" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1967" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="517" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1968" i_stop="2331" i_length="364">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2332" g_stop="2373" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="559" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2374" i_stop="2469" i_length="96">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2470" g_stop="2599" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="689" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E393541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1967"/>
          <exon e_start="2332" e_stop="2373"/>
          <exon e_start="2470" e_stop="2599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTATCTGTTATTCTATTCAAGCTAGTCTTTTTAGTAAGAAACGTGATTACATAGATCTCTTTTTTGACACACACTGTGAAGAACTTTCTGCTCTCTGCTGATGTCCTTATGTTTTGTGTATGATGGGGGCTTAGCAGGTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAGGTAACAATTCTGTATTAATTATAGGGGCCAAGGCTAATGCTATTAGAGCTTAGCAACTACAGGCCAAGCAGTAACAGTTCTGAGATTGCTTTGTAGGGTGCTCTCAACCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTCTATTTGCTCCAAGAAAAACTCTAAAGACTTTTGATAAATAATGATTGGGTTAC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAG................................................................................................GGTGCTCTCAACCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTCTATTTGCTCCAAGAAAAACTCTAAAGACTTTTGATAAATAATGATTGGGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E253904" ref_strand="+" ref_description="SGN-E253904 [cLEG-28-K6]">
      <seq>tttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttgtgtaattgaggttgagcagtcattttggttgccatgagggtgctctcaaccagtggactagttcttttggaattccacccagtgtttggtatttgctttggtcttgattgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="93" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="242" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="299" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="338" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1967" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="516" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1968" i_stop="2331" i_length="364">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2332" g_stop="2373" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="558" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2374" i_stop="2469" i_length="96">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2470" g_stop="2546" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="635" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E253904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1967"/>
          <exon e_start="2332" e_stop="2373"/>
          <exon e_start="2470" e_stop="2546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTATCTGTTATTCTATTCAAGCTAGTCTTTTTAGTAAGAAACGTGATTACATAGATCTCTTTTTTGACACACACTGTGAAGAACTTTCTGCTCTCTGCTGATGTCCTTATGTTTTGTGTATGATGGGGGCTTAGCAGGTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAGGTAACAATTCTGTATTAATTATAGGGGCCAAGGCTAATGCTATTAGAGCTTAGCAACTACAGGCCAAGCAGTAACAGTTCTGAGATTGCTTTGTAGGGTGCTCTCAACCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAG................................................................................................GGTGCTCTCAACCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E394302" ref_strand="+" ref_description="SGN-E394302 [TUS-41-H1]">
      <seq>ttttagctcagtcttctcctttaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtgataccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttgtgtaattgaggttgagcagtctttttggttgccatgagggtgctcctcaccagtggactagttcttttggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="220" stop="2806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="93" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="242" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="299" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="338" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1967" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="516" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1968" i_stop="2331" i_length="364">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2332" g_stop="2373" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="558" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2374" i_stop="2469" i_length="96">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2470" g_stop="2506" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="595" r_length="37" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E394302" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1967"/>
          <exon e_start="2332" e_stop="2373"/>
          <exon e_start="2470" e_stop="2506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTATCTGTTATTCTATTCAAGCTAGTCTTTTTAGTAAGAAACGTGATTACATAGATCTCTTTTTTGACACACACTGTGAAGAACTTTCTGCTCTCTGCTGATGTCCTTATGTTTTGTGTATGATGGGGGCTTAGCAGGTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAGGTAACAATTCTGTATTAATTATAGGGGCCAAGGCTAATGCTATTAGAGCTTAGCAACTACAGGCCAAGCAGTAACAGTTCTGAGATTGCTTTGTAGGGTGCTCTCAACCAGTGGACTAGTTCTTTTGGAATTC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGATACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG............................................................................................................................................................................................................................................................................................................................................................................GTTGTGTAATTGAGGTTGAGCAGTCTTTTTGGTTGCCATGAG................................................................................................GGTGCTCCTCACCAGTGGACTAGTTCTTTTGGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E595978" ref_strand="-" ref_description="SGN-E595978 [39262]">
      <seq>gcggctaggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaaagatggccggtttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttggagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaagcataatcctctatttcagcattgctgccttcttctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="105" r_length="70" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="254" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="311" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="350" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2143" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="693" r_length="343" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E595978" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595978" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGC-AAAAGATGGCCGG-TTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAAGATGGCCGGTTTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAGCATAATCCTCTATTTCAGCATTGCTGCCTTCTTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E481391" ref_strand="+" ref_description="SGN-E481391 [cSTD-18-E9]">
      <seq>gtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacatcttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcgaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcccgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgctgatgcagctgcaggtgctattgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgctgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttccccttcaaagaattatcttctattttagcaatgccttttcttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="84" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="233" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="290" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="329" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2141" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="685" r_length="356" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E481391" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATCTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCGAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCCGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCTGATGCAGCTGCAGGTGCTATTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCTGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTCCCCTTCAAAGAATTATCTTCTATTTTAGCAATGC-CTTTTCTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E590450" ref_strand="+" ref_description="SGN-E590450 [44046]">
      <seq>ttccctcttctctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaactggtggaaaggggaccatgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggttgtcagtggtaccccccaaacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaatttgaagaagttggctgagcagttccagaagcaggtacctggtgctgtagatgcggctgcagcacaggaagatgatgatgaggtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttggcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaagcataatcttctatttcagcattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="117" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="266" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="323" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="362" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2130" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="692" r_length="330" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E590450" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACTGGTGGAAAGGGGACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTCAGTGGTACCCCCCAAACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGTAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGAGGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTGGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E455466" ref_strand="+" ref_description="SGN-E455466 [cSTS-26-I20]">
      <seq>cccttttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatattgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaatttgaagaagttagctgagcagttccagaagcaggtacctggtgctgcagatgcagctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcanaagaattcttaaatgcttttaatagtaagctactttgcccttcaaagcataatcctctatttcagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="115" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="264" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="321" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="360" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2123" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="695" r_length="335" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="708"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E455466" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATATTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTAGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCANAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAGCATAATCCTCTATTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E590793" ref_strand="+" ref_description="SGN-E590793 [44397]">
      <seq>tccctcttatctgcgggctaggggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggctggttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttagagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaagcaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="118" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="267" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="324" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="363" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2120" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="683" r_length="320" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E590793" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCTGGTTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTAGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAGCAAAAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E346756" ref_strand="+" ref_description="SGN-E346756 [cTOF-28-L22]">
      <seq>gttttagctcagtcttctcctcacagattaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtacccatgagaagaaagaagaaagccgtacaccaaaacaactaccaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaagggttttgttgaacttactttccagtgttctgatattagattttgccttagctttngagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="95" r_length="69" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="246" r_length="151" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="303" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="342" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2119" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="673" r_length="331" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E346756" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTA-CCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACA-CAAAACAACTA-CAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAA-GGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTT</genome_strand>
        <mrna_strand>ATTAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACCAAAACAACTACCAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTNGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E408233" ref_strand="+" ref_description="SGN-E408233 [PPI-10-D15]">
      <seq>gttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggctggttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttagagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcanaagaattcttaaatgcttttaatagtaagctactttgcccttcaaagcatanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="244" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="301" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="340" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2118" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="658" r_length="318" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E408233" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCTGGTTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTAGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCANAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAGCATANAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E582729" ref_strand="+" ref_description="SGN-E582729 [8362]">
      <seq>gttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatattgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaatttgaagaagttagctgagcagttccagaagcaggtacctggtgctgcagatgcagctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagatttgccttagcttttgagtgtctatttcatttctattgtgacacatctcaaagaatcttaaatgcctttaatagtaagctactttggcccttcagagcataatcttctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="244" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="301" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="340" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2118" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="667" r_length="327" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E582729" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATT-CTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTT-GCCCTTCAAAGCATAATCTTCTATT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATATTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTAGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGA-TTTGCCTTAGCTTTTGAGTG-TCTATTTCATTTCTATTGTGACACATCTC-AAAGAA-TCTTAAATGCCTTTAATAGTAAGCTACTTTGGCCCTTCAGAGCATAATCTTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E734321" ref_strand="+" ref_description="SGN-E734321 [LB12BD12]">
      <seq>gggttttagctcagtcttctcttccaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="220" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="96" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="245" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="302" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="341" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2117" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="675" r_length="334" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E734321" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGA----ACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E746286" ref_strand="+" ref_description="SGN-E746286 [GI|47104768]">
      <seq>cttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="271" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="328" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="367" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2117" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="701" r_length="334" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E746286" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E346665" ref_strand="+" ref_description="SGN-E346665 [cTOF-28-K21]">
      <seq>gggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggaggggccatacttcctgaaggttttgttgaacttactttcccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="97" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="246" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="303" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="342" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2117" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="672" r_length="330" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E346665" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGA-GGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTT-CCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E716113" ref_strand="+" ref_description="SGN-E716113 [FB16AF05]">
      <seq>gctcagtcttctcttcacagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="88" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="237" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="294" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="333" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2114" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="664" r_length="331" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E716113" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGA----ACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E552026" ref_strand="+" ref_description="SGN-E552026 [cTSB-2-J23]">
      <seq>ttcttttttcatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="123" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="272" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="329" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="368" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2114" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="699" r_length="331" r_score="0.868"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E552026" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E457773" ref_strand="+" ref_description="SGN-E457773 [cPRO-3-N15]">
      <seq>ggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggctggttcggttagaaccggtggaaagggtaccgtgnagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttagagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="103" r_length="69" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.92"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="252" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="309" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="348" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2113" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="661" r_length="313" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E457773" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATG-AGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCTGGTTCGGTTAGAACCGGTGGAAAGGGTACCGTGNAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTAGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E585085" ref_strand="+" ref_description="SGN-E585085 [66803]">
      <seq>tttccctcttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcgaaagatggccggttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttggagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaaaaaaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="118" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="267" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="324" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="363" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2113" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="676" r_length="313" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E585085" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCGAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAAAAAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E734363" ref_strand="+" ref_description="SGN-E734363 [LB12BH07]">
      <seq>ctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="106" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="255" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="312" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="351" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2113" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="675" r_length="324" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E734363" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E342321" ref_strand="+" ref_description="SGN-E342321 [cTOF-8-D13]">
      <seq>tcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggtttttgtgaacttacttttcagtggtctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacattctcaaaaaattccttaaatgcttntaatagtaatcctaccttgcccttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="87" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="236" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="293" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="332" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2112" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="657" r_length="325" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E342321" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACA-TCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAT-CTACTTTGCCCTTCAAAGCATAATCT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTTGTGAACTTACTTTTCAGTGGTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATTCTCAAAAAATTCCTTAAATGCTTNTAATAGTAATCCTACCTTGCCCTTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E596832" ref_strand="+" ref_description="SGN-E596832 [40323]">
      <seq>cttttttccatcttctctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccaattcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagggcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcanaagaattcttaaatgcttttaatagtaagctactttccccttataaaaaagtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="271" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="328" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="367" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2111" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="695" r_length="328" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E596832" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E596832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTT-CAAAGCATAATC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCAATTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGGGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCANAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTCCCCTTATAAAAAAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E408341" ref_strand="+" ref_description="SGN-E408341 [PPI-10-H12]">
      <seq>ccattttttccctcttctctgcggctagggttttaagctcagtcttctcctcacaagcgaatgtagaaaagttgcaaaagacggctggttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactaccaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttagagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgccccttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="224" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="124" r_length="68" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="274" r_length="150" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="331" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="370" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2111" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="682" r_length="312" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E408341" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTA-CAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTG-CCCTTCAAAGCATAATC</genome_strand>
        <mrna_strand>GCGAATGTAGAAAAGTTGCAAAAGACGGCTGGTTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACCAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTAGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCCTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E594040" ref_strand="+" ref_description="SGN-E594040 [37283]">
      <seq>cttttttccatcttctccgccgctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccaattcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagggcaccttaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaagaattcttaaatgctttttaatagtaagctactttcgccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="270" r_length="148" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="327" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="366" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="692" r_length="326" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E594040" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGC-TTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCAATTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGGGCACCTT-AAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTC-AAAGAATTCTTAAATGCTTTTTAATAGTAAGCTACTTTCGCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E390765" ref_strand="-" ref_description="SGN-E390765 [TUS-47-M15]">
      <seq>cttttttccattttctctgcggctagggttttagctcagttttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="271" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="328" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="367" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="694" r_length="327" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E390765" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390765" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E393367" ref_strand="-" ref_description="SGN-E393367 [TUS-38-D21]">
      <seq>ttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="110" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="259" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="316" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="355" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="682" r_length="327" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E393367" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393367" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E733895" ref_strand="+" ref_description="SGN-E733895 [LB11AH12]">
      <seq>tgcggctagggttctatctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="105" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="254" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="311" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="350" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="677" r_length="327" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E733895" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E733987" ref_strand="+" ref_description="SGN-E733987 [LB11BH11]">
      <seq>tgcggctagggttctatctcagtcttctcttccaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="220" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="104" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="253" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="310" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="349" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="676" r_length="327" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E733987" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E464388" ref_strand="+" ref_description="SGN-E464388 [cPRO-17-J8]">
      <seq>gttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccaattcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagggcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagattattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaaagaattcttaaatgctttttaatagtaagctcctttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="244" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="301" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="340" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="667" r_length="327" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E464388" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGC-TTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCAATTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGGGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATTATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTTAATAGTAAGCTCCTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E285851" ref_strand="+" ref_description="SGN-E285851 [cLES-5-H6]">
      <seq>tcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaagttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="83" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="232" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="289" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="328" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="649" r_length="321" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E285851" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAAGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E711343" ref_strand="+" ref_description="SGN-E711343 [FB01DA07]">
      <seq>ccattattctcttcacagatgaatgtagaaaagttgcaaaacatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="86" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="235" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="292" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="331" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2109" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="657" r_length="326" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E711343" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAACATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E592968" ref_strand="+" ref_description="SGN-E592968 [36188]">
      <seq>ctcttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttggagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttggccttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="113" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="262" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="319" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="358" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2109" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="667" r_length="309" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E592968" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGGCCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E463801" ref_strand="+" ref_description="SGN-E463801 [cPRO-16-C23]">
      <seq>cttttttccatcttctccgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccaattcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagggcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttccccttcnaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="271" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="328" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="367" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2108" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="691" r_length="324" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E463801" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCAATTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGGGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTCCCCTTCNAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E400373" ref_strand="+" ref_description="SGN-E400373 [cSTC-8-M18]">
      <seq>ttccattttttcccttttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatattgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaatttgaagaagttagctgagcagttccagaagcaggtacctggtgctgcagatgcagctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctacttttgcctttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="126" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="275" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="332" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="371" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2108" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="691" r_length="320" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E400373" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATATTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTAGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTTGCCTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E578249" ref_strand="-" ref_description="SGN-E578249 [LE12BC12]">
      <seq>ttttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="123" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="272" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="329" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="368" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2107" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="692" r_length="324" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E578249" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578249" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGA----ACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E558414" ref_strand="+" ref_description="SGN-E558414 [17750]">
      <seq>tttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccaattcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacaggggcaccttggaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttccccttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="246" r_length="151" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="303" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="342" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2107" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="665" r_length="323" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E558414" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACA-GAGCACCTT-GAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCAATTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGGGGCACCTTGGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTCCCCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E589240" ref_strand="+" ref_description="SGN-E589240 [42810]">
      <seq>attttttccctcttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttggagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="271" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="328" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="367" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2105" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="672" r_length="305" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E589240" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E551581" ref_strand="+" ref_description="SGN-E551581 [cTSB-1-D10]">
      <seq>agctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="90" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="239" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="296" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="335" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2105" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="651" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="666"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E551581" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E325642" ref_strand="+" ref_description="SGN-E325642 [cTOC-15-C19]">
      <seq>tttcattcttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="129" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="278" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="335" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="374" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2104" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="695" r_length="321" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E325642" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E326961" ref_strand="+" ref_description="SGN-E326961 [cTOC-18-P14]">
      <seq>ttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttcccatggtctgaaatcagattttaccttagcttttgagtggtctatttcatgtctattgtgaccacatctcaaaagaattctttaanntgctttatagtaagctattttcccctttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="119" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="268" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="325" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="364" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2103" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="684" r_length="320" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E326961" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCCATGGTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGGTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTTAANNTGCTTTATAGTAAGCTATTTTCCCCTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E595557" ref_strand="+" ref_description="SGN-E595557 [38833]">
      <seq>gttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccaattcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagggcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttgggcttttggagtgtcctattccatgtctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaaagctactttccccttcaaaaaaaaaaaaaaacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="244" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="301" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="340" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2103" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="662" r_length="322" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="676"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E595557" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTT-AGCTTTT-GAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGT-AATCTACTTTGCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCAATTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGGGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGGCTTTTGGAGTGTCCTATTCCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAAGCTACTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E712820" ref_strand="+" ref_description="SGN-E712820 [FB05DF09]">
      <seq>ctcttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaaaaaanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="113" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="262" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="319" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="358" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2103" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="672" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="673" polyA_stop="694"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E712820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E560453" ref_strand="+" ref_description="SGN-E560453 [20110]">
      <seq>gtttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccaattcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagggcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaatgaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggcagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacattcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttcccctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="94" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="243" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="300" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="339" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2100" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="655" r_length="316" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E560453" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGG-AGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCAATTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGGGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAATGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGCAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACA-TTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTCCCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E597404" ref_strand="+" ref_description="SGN-E597404 [40907]">
      <seq>cacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtccgtgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgtgttatccaattcagtaaccccaaagttcaagcatcaatgctgcaataatgggttgtcgggaaccccccaacaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttggagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="73" r_length="67" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="221" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="271" r_length="50" r_score="0.825"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.80"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="310" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2099" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="609" r_length="299" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E597404" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGT-CCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATG-TGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAA-TGCTGC-AATA-ATGGGTTGTC-G-GGAACCCCCCA-AC-AAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E715846" ref_strand="+" ref_description="SGN-E715846 [FB15BG03]">
      <seq>cttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctgaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="111" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="260" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="317" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="356" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2099" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="666" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E715846" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTGAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E346638" ref_strand="+" ref_description="SGN-E346638 [cTOF-28-P14]">
      <seq>ttctctgcggctagggttttaagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagaatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagctnttgagtgttctatttcatgtctattgtgaccacatctcanaagaattcttaaatgcttttaatagtaagctattttcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="112" r_length="69" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="261" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="318" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="357" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2098" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="672" r_length="315" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E346638" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAG-ATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGAATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTNTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCANAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E328799" ref_strand="+" ref_description="SGN-E328799 [cTOC-23-N20]">
      <seq>ttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="119" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="268" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="325" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="364" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2097" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="678" r_length="314" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E328799" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E723011" ref_strand="+" ref_description="SGN-E723011 [FC19AC02]">
      <seq>tttcattcttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccaaaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtggaccacatctcaaaagaattcttaaaggcttttaatagaaagctattttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="129" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="278" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="335" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="374" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2096" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="688" r_length="314" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E723011" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGA----ACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGT-GA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAAAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGGACCACATCTCAAAAGAATTCTTAAAGGCTTTTAATAGAAAGCTATTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E287102" ref_strand="+" ref_description="SGN-E287102 [cLES-6-I17]">
      <seq>ttttttccctcttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattgagtaaccccaaagttcaagcgtcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="121" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="270" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="327" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="366" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2092" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="669" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E287102" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTGAGTAACCCCAAAG.......................................................................................TTCAAGCGTCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E454253" ref_strand="+" ref_description="SGN-E454253 [cSTS-22-N9]">
      <seq>ttttttttttttttttttcttatctgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggctggttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttagagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgggacacatctcaaaagaattcttaaatgcttttaatagtaagctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="129" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="278" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="335" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="374" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2090" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="664" r_length="290" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="21" polyA_stop="1"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E454253" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTAC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCTGGTTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTAGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGGGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E246518" ref_strand="+" ref_description="SGN-E246518 [cLEF-45-M7]">
      <seq>ttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgggaccacatctcaaaagaattcttaaatgcttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="121" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="270" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="327" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="366" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2080" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="663" r_length="297" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E246518" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGGGACCACATCTCAAAAGAATTCTTAAATGCTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E390766" ref_strand="+" ref_description="SGN-E390766 [TUS-47-M15]">
      <seq>cttttttccatcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaattcagattttaccttagcttttgagtgttctattttcatgtctattgtgaccacttctcaaaaaaattcttaaatgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="271" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="328" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="367" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2078" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="663" r_length="296" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E390766" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTA-TTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAATTCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTTCATGTCTATTGTGACCACTTCTCAAAAAAATTCTTAAATGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E289126" ref_strand="+" ref_description="SGN-E289126 [cLES-18-B21]">
      <seq>tttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcatgcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="93" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="242" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="299" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="338" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2078" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="633" r_length="295" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E289126" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCATGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E348011" ref_strand="+" ref_description="SGN-E348011 [cTOF-31-I9]">
      <seq>tcttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaataaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="112" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="261" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="318" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="357" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2073" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="647" r_length="290" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E348011" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAATAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E310115" ref_strand="+" ref_description="SGN-E310115 [cLEZ-8-N14]">
      <seq>ctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="88" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="237" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="294" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="333" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2073" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="623" r_length="290" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E310115" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E617573" ref_strand="+" ref_description="SGN-E617573 [66424]">
      <seq>attcttttttccatcttctccgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccaattcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagggcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttcgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgtctatttcatgtctattgtgacacatctcaaaagaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="125" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="274" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="331" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="370" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2065" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="649" r_length="279" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E617573" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCAATTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGGGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAA-GTTTCGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTG-TCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E558517" ref_strand="+" ref_description="SGN-E558517 [17868]">
      <seq>ttctcctcacagatgaatgtagaaaagttgcaaagatggccggttcggttagaactggtggaaaggggaccatgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcaccttggaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggttgtcagtggtaccccccaaacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaatttgaagaagttggctgagcagttccagaagcaggtacctggtgctgtagatgcggctgcagcacaggaagatgatgatgaggtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttggcttttgagtgttctatttcatttctattgtgacacatctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="79" r_length="67" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="229" r_length="150" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="286" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="325" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2058" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="583" r_length="258" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E558517" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTT-GAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGC-AAAGATGGCCGGTTCGGTTAGAACTGGTGGAAAGGGGACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTCAGTGGTACCCCCCAAACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGTAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGAGGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTGGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E480725" ref_strand="+" ref_description="SGN-E480725 [cSTD-15-E13]">
      <seq>gttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccaattcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagggcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgggacacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="244" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="301" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="340" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2053" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="609" r_length="269" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E480725" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCAATTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGGGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGGGACACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E619751" ref_strand="+" ref_description="SGN-E619751 [70444]">
      <seq>tcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttggagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggcacacttcctgaaggttttgttgaacttcctttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="75" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="224" r_length="149" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="281" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="320" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2051" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="570" r_length="250" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E619751" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGG-CACACTTCCTGAAGGTTTTGTTGAACTTCCTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E325924" ref_strand="+" ref_description="SGN-E325924 [cTOC-12-K18]">
      <seq>ttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttacttttcagtgttctgatattagattttgccttagcttttgagtgttctatttcattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="81" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="230" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="287" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="326" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2041" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="578" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E325924" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTA</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTTCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E288782" ref_strand="+" ref_description="SGN-E288782 [cLES-17-M21]">
      <seq>gcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="104" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="253" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="310" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="349" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2039" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="599" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E288782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E268136" ref_strand="+" ref_description="SGN-E268136 [cLEI-15-G6]">
      <seq>ttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttaacttttgagtgttctatttcatgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="94" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="243" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="300" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="339" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2037" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="591" r_length="252" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E268136" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAACTTTTGAGTGTTCTATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E285715" ref_strand="+" ref_description="SGN-E285715 [cLES-5-N14]">
      <seq>agggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatactttctgaaggttttgttgaacttactttccagtgttctgatattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="98" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="247" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="304" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="343" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2004" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="558" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E285715" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTTCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E564402" ref_strand="+" ref_description="SGN-E564402 [2651]">
      <seq>tagtggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttngttatccanattcangtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttggagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccatacttcctgaaagggtttgggttgaaacttactttccagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="100" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="252" r_length="152" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.87"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="309" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="348" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1967" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="514" r_length="166" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E564402" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTT-GTTATCCA-ATTCA-GTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTNGTTATCCANATTCANGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCATACTTCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E393118" ref_strand="+" ref_description="SGN-E393118 [TUS-38-D21]">
      <seq>ttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagagcttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="110" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="259" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="316" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="355" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1967" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="533" r_length="178" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E393118" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAGCTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E310736" ref_strand="+" ref_description="SGN-E310736 [cLEZ-15-B1]">
      <seq>tctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaagcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaagaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="258" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="315" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="354" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1940" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="505" r_length="151" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E310736" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAAGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAAGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E580071" ref_strand="+" ref_description="SGN-E580071 [5314]">
      <seq>gttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctggctattgaagaagtcaacattttcaaagaggatattgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaatttgaagaagttagctgagcagttccagaagcaggtacctggtgctgcagatgcagctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="245" r_length="150" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="302" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="341" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1939" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="491" r_length="150" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E580071" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCT-GCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGGCTATTGAAGAAGTCAACATTTTCAAAGAGGATATTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTAGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E304806" ref_strand="+" ref_description="SGN-E304806 [cLEX-10-O18]">
      <seq>ttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="94" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="243" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="300" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="339" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1938" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="488" r_length="149" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E304806" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E338617" ref_strand="+" ref_description="SGN-E338617 [cTOE-15-O20]">
      <seq>cggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="103" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="252" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="309" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="348" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1938" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="497" r_length="149" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E338617" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E305251" ref_strand="+" ref_description="SGN-E305251 [cLEX-15-E4]">
      <seq>tgcggctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="105" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="254" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="311" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="350" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1933" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="494" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E305251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E295147" ref_strand="+" ref_description="SGN-E295147 [cLET-20-O22]">
      <seq>gttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccgggaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="244" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="301" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="340" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1914" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="466" r_length="126" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E295147" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCC-AGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCGGGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E295266" ref_strand="+" ref_description="SGN-E295266 [cLET-20-D11]">
      <seq>gctagggttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="101" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="250" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="307" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="346" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1914" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="471" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E295266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E580119" ref_strand="+" ref_description="SGN-E580119 [5362]">
      <seq>gttttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcgggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctggctattgaagaagtcaacattttcaaagaggatattgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccaggctgggtcctgataatttggagaatttgaagaagttagctgagcagttccagaagcaggtacctggtgctgcagatgcagctgcaggtgctgttggcagcacaggaagatcatgatgatgtacccagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="96" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="246" r_length="150" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="303" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="343" r_length="40" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.95"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1912" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="468" r_length="125" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E580119" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E580119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTC-GGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCT-GCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCA-GCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTT-GCAGCACAGGAAGATGATGATGATGTA-CCAGAAC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGGCTATTGAAGAAGTCAACATTTTCAAAGAGGATATTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTAGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGATGCAGCTGCAGGTGCTGTTGGCAGCACAGGAAGATCATGATGATGTACCCAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E283988" ref_strand="+" ref_description="SGN-E283988 [cLER-13-H18]">
      <seq>ttagctcagtcttctcctcacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatctggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="92" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="241" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="298" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="337" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1912" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="460" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E283988" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAAC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATCTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E285609" ref_strand="+" ref_description="SGN-E285609 [cLES-5-E22]">
      <seq>ttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="92" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="241" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="298" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="337" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1907" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="455" r_length="118" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E285609" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E305255" ref_strand="+" ref_description="SGN-E305255 [cLEX-15-E22]">
      <seq>gttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="95" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="244" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="301" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="340" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1906" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="457" r_length="117" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E305255" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTAC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E308714" ref_strand="+" ref_description="SGN-E308714 [cLEZ-11-E22]">
      <seq>ttctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaagcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="110" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="259" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="316" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="355" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1903" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="469" r_length="114" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E308714" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAAGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E324909" ref_strand="+" ref_description="SGN-E324909 [cTOC-11-N4]">
      <seq>ggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="102" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="251" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="308" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="347" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1880" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="438" r_length="91" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E324909" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGC</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E289466" ref_strand="+" ref_description="SGN-E289466 [cLET-3-J22]">
      <seq>tctctgcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="109" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="258" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="315" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="354" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1862" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="427" r_length="73" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E289466" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E283683" ref_strand="+" ref_description="SGN-E283683 [cLES-1-N12]">
      <seq>gcggctagggttttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="2130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="104" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="253" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="310" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="349" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1830" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="390" r_length="41" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E283683" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAG</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E563787" ref_strand="+" ref_description="SGN-E563787 [2228]">
      <seq>cacaagatgaatgtagaaaagttgcaaaagatggccggttcggttagaactggtggaaaggggaccatgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggttgtcagtggtaccccccaaacaaagaaattgcaggatattctctcctcaaattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="1989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="74" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="223" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="280" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1689" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="310" r_length="30" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E563787" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCT-TCCTCAAATTATT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACTGGTGGAAAGGGGACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTCAGTGGTACCCCCCAAACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCTCCTCAAATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E290407" ref_strand="+" ref_description="SGN-E290407 [cLES-20-F11]">
      <seq>ttagctcagtcttctcttcacaagatgaatgtagaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="218" stop="1693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="522" g_stop="589" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="92" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="241" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1393" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="268" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E290407" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="522" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACAT</genome_strand>
        <mrna_strand>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E688063" ref_strand="+" ref_description="SGN-E688063 [T3_tus_85_G18]">
      <seq>gaatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgatgatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaagtcactcaatgcgtggcttttgaattcaccaaatttttacaagctgtgtgggagaaaaagactcaaccttgatggattcaaaatggccattatttcaccaatgctggaacgaagtcaagtatttagaggtttcaatccctttttggttatataaataggtcaagtgggaaacaacaataagatattattcaggtgcttttgaccagactaataaggtcgttgtggcaaagtactactgtatcagatgtaatggattagcatctcaaaacacttctatggaaaggagaccaataatagatggacattcattattttattaagggaaaagggtcagatataccctcaattttatcagttagaactgatatatcccttattatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="224" stop="5141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="524" g_stop="589" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="215" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="272" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="311" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1967" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="489" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1968" i_stop="4458" i_length="2491">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4459" g_stop="4841" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="872" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E688063" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="524" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1967"/>
          <exon e_start="4459" e_stop="4841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTATCTGTTATTCTATTCAAGCTAGTCTTTTTAGTAAGAAACGTGATTACATAGATCTCTTTTTTGACACACACTGTGAAGAACTTTCTGCTCTCTGCTGATGTCCTTATGTTTTGTGTATGATGGGGGCTTAGCAGGTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAGGTAACAATTCTGTATTAATTATAGGGGCCAAGGCTAATGCTATTAGAGCTTAGCAACTACAGGCCAAGCAGTAACAGTTCTGAGATTGCTTTGTAGGGTGCTCTCAACCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTCTATTTGCTCCAAGAAAAACTCTAAAGACTTTTGATAAATAATGATTGGGTTACCACTTCCCTATCAGTCTCGAGTGGTACACAAACTATTTTTAAGTAGCTCGTTATCTTGTTGAAGTTATCTCCTCTCTTATTACTTTCACACTTTGCTGAGGAAATTCTGGGATTTTAAGTGCAGTTTTTAAACCAAAAGGAAGACTCCAATGTTTATTTTTCAAAGAATTCTGTTGATCACAAGAAAGGTAAGTGTTTTTCCAGCTAATAGAGCAAGGTTTGGAAAGTAATTAAAAAGTACTTTACAATCCATTTGTTCAACGTTTAATACACAACAAACACTTAAAGCAAGGATTTATTCTATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGAGCTTTCTATTTGATTGTATCGAAAGGTGGCTTATTAGTATCATTTAGCAGATGAAAAAAAAGTATTTTGTACTAGTTACAACTCCACAGTAGAAAATAAGTTGTTGCAATGACCTACTTGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAACTTGTTATCTCTAGACATTCTTCATGGAAAGCGCCGCGCAGTTGCATGTACTATCATGGTCAGGAAAAGCTTCTTGCAATATGCATTTGGCACAGATAAATCTGAAAACGGAAGAACTTTTAACTCTGCATCCAAGTTTTTGATTATCCATCTATTTATGCAGATTTCTTTTCCTATTCAGCTTAAATGCTGCTATGAGTTCTAAGGGGTAGGCAAATAAAGTGCAATTAACAGAGAAGCAGCAGAGAATATAAGCAATGATTTGTTAAGACATCTGATGTGGCATATGAGATTAACTTACTCCCAAAAAGCTAGTTCATCACGGGAAAATGATCAAGTCCATACAAGCTAACTACTCCGTTGTCCAATCAATGTGAAACTTTGACTCGCTCTAGTAAGTAGTAACTCCCTTCGCACCCAGGCCTAATTGGGGCATGGACCGCGGATTGAATGTCCAAATTGAGAGGAACCTTTAATACTATTTTAAGATAATGACACGTGAATTTAACTTAATCTCAAAATCTAATTCATAATTGGAGAATTGTTTGAGTTTATATGAATCAACTACTGGTCCATCACCACTCTACTCTTAACATAATCAAATTTGACAAAAGTGTTAGTTGCACACATGAAGGACCTCTTTAGAATGGTGGAAGTAGTGATGGAGCCACCAATGTCATTTTACACCCCTTTCGCTGGAACATTATATTGGTTCATCAACTACTCAACTTGCTGCAAATGTCAACCTTAACCCTTGAATCATTGATTTTGCAGTCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAAAAGACTCAACCTTGATGGATTCAAAATGGCCATTATTTCACCAATGCTGGAACGAAGTCAAGTATTTAGAGGTTTCAATCCCTTTTTGGTTATATAAATAGGTCAAGTGGGAAACAACAATAAGATATTATTCAGGTGCTTTTGACCAGACTAATAAGGTCGTTGTGGCAAAGTACTACTGTATCAGATGTAATGGATTAGCATCTCAAAACACTTCTATGGAAAGGAGACAAATAATAGATGCACATTCATTATATTATTAAGGGAAAAGGGTCAGATATACCCTCAATTTTATCAGTTAGAGCTGATATATCCCTTATTATGAAA</genome_strand>
        <mrna_strand>GAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATGATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAAAAGACTCAACCTTGATGGATTCAAAATGGCCATTATTTCACCAATGCTGGAACGAAGTCAAGTATTTAGAGGTTTCAATCCCTTTTTGGTTATATAAATAGGTCAAGTGGGAAACAACAATAAGATATTATTCAGGTGCTTTTGACCAGACTAATAAGGTCGTTGTGGCAAAGTACTACTGTATCAGATGTAATGGATTAGCATCTCAAAACACTTCTATGGAAAGGAGACCAATAATAGATGGACATTCATTATTTTATTAAGGGAAAAGGGTCAGATATACCCTCAATTTTATCAGTTAGAACTGATATATCCCTTATTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E335372" ref_strand="+" ref_description="SGN-E335372 [cTOE-2-M1]">
      <seq>aatgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgatgatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaagtcactcaatgcgtggcttttgaattcaccaaatttttacaagctgtgtgggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="225" stop="4814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="525" g_stop="589" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="214" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="271" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="310" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1967" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="488" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1968" i_stop="4458" i_length="2491">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4459" g_stop="4514" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="544" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E335372" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="525" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1967"/>
          <exon e_start="4459" e_stop="4514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTATCTGTTATTCTATTCAAGCTAGTCTTTTTAGTAAGAAACGTGATTACATAGATCTCTTTTTTGACACACACTGTGAAGAACTTTCTGCTCTCTGCTGATGTCCTTATGTTTTGTGTATGATGGGGGCTTAGCAGGTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAGGTAACAATTCTGTATTAATTATAGGGGCCAAGGCTAATGCTATTAGAGCTTAGCAACTACAGGCCAAGCAGTAACAGTTCTGAGATTGCTTTGTAGGGTGCTCTCAACCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTCTATTTGCTCCAAGAAAAACTCTAAAGACTTTTGATAAATAATGATTGGGTTACCACTTCCCTATCAGTCTCGAGTGGTACACAAACTATTTTTAAGTAGCTCGTTATCTTGTTGAAGTTATCTCCTCTCTTATTACTTTCACACTTTGCTGAGGAAATTCTGGGATTTTAAGTGCAGTTTTTAAACCAAAAGGAAGACTCCAATGTTTATTTTTCAAAGAATTCTGTTGATCACAAGAAAGGTAAGTGTTTTTCCAGCTAATAGAGCAAGGTTTGGAAAGTAATTAAAAAGTACTTTACAATCCATTTGTTCAACGTTTAATACACAACAAACACTTAAAGCAAGGATTTATTCTATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGAGCTTTCTATTTGATTGTATCGAAAGGTGGCTTATTAGTATCATTTAGCAGATGAAAAAAAAGTATTTTGTACTAGTTACAACTCCACAGTAGAAAATAAGTTGTTGCAATGACCTACTTGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAACTTGTTATCTCTAGACATTCTTCATGGAAAGCGCCGCGCAGTTGCATGTACTATCATGGTCAGGAAAAGCTTCTTGCAATATGCATTTGGCACAGATAAATCTGAAAACGGAAGAACTTTTAACTCTGCATCCAAGTTTTTGATTATCCATCTATTTATGCAGATTTCTTTTCCTATTCAGCTTAAATGCTGCTATGAGTTCTAAGGGGTAGGCAAATAAAGTGCAATTAACAGAGAAGCAGCAGAGAATATAAGCAATGATTTGTTAAGACATCTGATGTGGCATATGAGATTAACTTACTCCCAAAAAGCTAGTTCATCACGGGAAAATGATCAAGTCCATACAAGCTAACTACTCCGTTGTCCAATCAATGTGAAACTTTGACTCGCTCTAGTAAGTAGTAACTCCCTTCGCACCCAGGCCTAATTGGGGCATGGACCGCGGATTGAATGTCCAAATTGAGAGGAACCTTTAATACTATTTTAAGATAATGACACGTGAATTTAACTTAATCTCAAAATCTAATTCATAATTGGAGAATTGTTTGAGTTTATATGAATCAACTACTGGTCCATCACCACTCTACTCTTAACATAATCAAATTTGACAAAAGTGTTAGTTGCACACATGAAGGACCTCTTTAGAATGGTGGAAGTAGTGATGGAGCCACCAATGTCATTTTACACCCCTTTCGCTGGAACATTATATTGGTTCATCAACTACTCAACTTGCTGCAAATGTCAACCTTAACCCTTGAATCATTGATTTTGCAGTCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAA</genome_strand>
        <mrna_strand>AATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATGATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E712301" ref_strand="+" ref_description="SGN-E712301 [FB04BH06]">
      <seq>tgtagaaaagttgcaaaagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="227" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="527" g_stop="589" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="212" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="269" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="308" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2116" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="635" r_length="327" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E712301" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="527" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTA</genome_strand>
        <mrna_strand>TGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E409465" ref_strand="+" ref_description="SGN-E409465 [PPI-14-K21]">
      <seq>gaaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacatcttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcgaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcccgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgctgatgcagctgcaggtgctattgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgctgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttccccttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="231" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="531" g_stop="589" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="208" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="265" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="304" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2109" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="629" r_length="325" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E409465" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="531" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAA</genome_strand>
        <mrna_strand>GAAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATCTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCGAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCCGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCTGATGCAGCTGCAGGTGCTATTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCTGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTCCCCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E734494" ref_strand="+" ref_description="SGN-E734494 [LB12DC07]">
      <seq>aaaagttgcaaaagatggccggttcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="232" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="532" g_stop="589" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="207" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="264" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="303" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2103" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="623" r_length="320" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="639"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E734494" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="532" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGA----ACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAA</genome_strand>
        <mrna_strand>AAAAGTTGCAAAAGATGGCCGGTTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E575913" ref_strand="-" ref_description="SGN-E575913 [35612]">
      <seq>ttgcaaaaagatggccaattcggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaaccgatgacaaaagactacagggcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="237" stop="2397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="537" g_stop="589" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.90"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="203" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="260" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="299" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2097" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="612" r_length="313" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E575913" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575913" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="537" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGC-AAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCC</genome_strand>
        <mrna_strand>TTGCAAAAAGATGGCCAATTCGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGGGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E400374" ref_strand="-" ref_description="SGN-E400374 [cSTC-8-M18]">
      <seq>gcaaaagatggccggttcggttagaaccggtggaaagggtaccatgaaaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatattgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaatttgaagaagttagctgagcagttccagaagcaggtacctggtgctgcagatgcagctgcaggtgctgttgcagcaacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="239" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="539" g_stop="589" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="200" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="257" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="296" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2109" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="618" r_length="322" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E400374" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400374" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="539" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGC-ACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAA</genome_strand>
        <mrna_strand>GCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATATTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTAGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGATGCAGCTGCAGGTGCTGTTGCAGCAACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E593979" ref_strand="+" ref_description="SGN-E593979 [37221]">
      <seq>aagatggccggttcggttagaaccggtggaaagggtaccatgagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatattgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaatttgaagaagttagctgagcagttccagaagcaggtacctggtgctgcagatgcagctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="243" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="543" g_stop="589" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="196" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="253" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="292" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="614" r_length="322" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E593979" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="543" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>AAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATATTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTAGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E557630" ref_strand="+" ref_description="SGN-E557630 [16460]">
      <seq>ttcggttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttagagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgctttttaatagtaagctactttgccttcaaaaaaattgttggacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="254" stop="2413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="554" g_stop="589" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="185" r_length="149" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="242" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="281" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2119" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="599" r_length="318" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E557630" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="554" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGC-TTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTT</genome_strand>
        <mrna_strand>TTCGGTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTAGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTTAATAGTAAGCTACTTTG-CCTTCAAA-AAAATTGTTGGACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E274440" ref_strand="+" ref_description="SGN-E274440 [cLEN-19-K5]">
      <seq>cggtcagaaccggtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcatgcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcanaagaattcttaaatgcttttaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="256" stop="2383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="556" g_stop="589" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="183" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="240" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="279" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2083" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="579" r_length="300" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E274440" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="556" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGT</genome_strand>
        <mrna_strand>CGGTCAGAACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCATGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCANAAGAATTCTTAAATGCTTTTAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E560689" ref_strand="+" ref_description="SGN-E560689 [20383]">
      <seq>gttagaaccggtggaaagggtaccgtgagaagaaagaagaaagccgtacacaagacaactacaactgatgacaaaagactacagagcacgttgaaacagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttggagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="258" stop="2236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="558" g_stop="589" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="182" r_length="150" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="239" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="278" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="1936" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="413" r_length="135" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E560689" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="558" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGAACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAA-AGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAG</genome_strand>
        <mrna_strand>GTTAGAACCGGTGGAAAGGGTACCGTGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAAGCCGTACACAAGACAACTACAACTGATGACAAAAGACTACAGAGCACGTTGAAACAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E724197" ref_strand="+" ref_description="SGN-E724197 [FC23BE04]">
      <seq>aaccggtggaaagggtaccatgagaagaaagaaaaaggccgtacacaagacaactacaaccgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccaaacaaagaaattgcaggatattcttcctcaaatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccaaaacttgtggctggtgaaacttttgaagctgctgccgaggaaaaccacgcttcttaaagtttttgttgatttcccttactttccaatgtcctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="263" stop="2378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="563" g_stop="589" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="176" r_length="149" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="233" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="272" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2078" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="567" r_length="295" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E724197" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="563" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGGTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGA----ACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTA</genome_strand>
        <mrna_strand>AACCGGTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAAAGGCCGTACACAAGACAACTACAACCGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAAACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAAAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAAAACCACGCTTCTTAAAGTTTTTGTTGATTTCCCTTACTTTCCAATGTCCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E300257" ref_strand="-" ref_description="SGN-E300257 [cLEW-17-B4]">
      <seq>gtggaaagggtaccatgagaagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="268" stop="2361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="568" g_stop="589" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541">
            <donor d_prob="0.925" d_score="0.00"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="171" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="228" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="267" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1790" g_stop="2061" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="545" r_length="278" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E300257" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300257" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="568" e_stop="589"/>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAAGGGTACCATGAGAAGGTATTTTTAGTTTTCTGTAGTTTCTGTGACTGTTGCGACATGGAAATAGTTTGTGTTAATGTATTGAGAAACAATGTGGGTTTGTTGCTAACTTGAAAGATTCCAGTTACTTGAGAGCCTGTTTTGCCATGATAACTATTCCTTTTTTTCCTTAAGAGTTGCTCATTATTACAAAATGAGTGTTTGTTTATAAAATTTCCAATTCTAACTTGGAGTGTGATTCCAAGTTTGAGAAAGTGCTCCAAACCTATCTTCCAACTCCATCTTCATAAATTCCAAATAAAGTGGTTGATTCTCTCTTTTGCAAAAAGTATATAATCAAACTCCATCTTCATCTCCAAATTCATAAATTACAAATAAAATGAAAAATATTTGGAATCTAATGGCCAAACACATACTTAAGTAGTAATGACTGACAAGTGTTTGTCCAAGGGTCAAAACTTGAGTGAGGAAGGGATAGGAAGGAGAAATGAGAAGTGTATTGATAAGGGATATCTTATTTTTCTCATTCATGTTTGCTGAATGAGTGCTTCTTCTACAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGA</genome_strand>
        <mrna_strand>GTGGAAAGGGTACCATGAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E355389" ref_strand="+" ref_description="SGN-E355389 [cTOS-25-K17]">
      <seq>aagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="829" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1128" g_stop="1279" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="209" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="248" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="575" r_length="327" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E355389" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1128" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>AAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E356837" ref_strand="+" ref_description="SGN-E356837 [cTOS-22-E23]">
      <seq>aagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="829" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1128" g_stop="1279" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="209" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="248" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="575" r_length="327" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E356837" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1128" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>AAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E349884" ref_strand="+" ref_description="SGN-E349884 [cTOS-3-A1]">
      <seq>aagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcanaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="829" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1128" g_stop="1279" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="209" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="248" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2109" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="574" r_length="326" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E349884" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1128" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAA</genome_strand>
        <mrna_strand>AAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCANAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E351942" ref_strand="+" ref_description="SGN-E351942 [cTOS-8-J12]">
      <seq>aagaaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="829" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1128" g_stop="1279" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="209" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="248" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2109" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="574" r_length="326" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E351942" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1128" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAA</genome_strand>
        <mrna_strand>AAGAAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E375795" ref_strand="-" ref_description="SGN-E375795 [TUS-15-G4]">
      <seq>aaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataatcttctatttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="831" stop="2421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="206" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="245" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2129" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="585" r_length="340" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E375795" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375795" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCT</genome_strand>
        <mrna_strand>AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E349439" ref_strand="+" ref_description="SGN-E349439 [cTOS-1-D18]">
      <seq>aaagaagaaggccgtacacaagacaactacaactgacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="831" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="206" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="245" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="572" r_length="327" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E349439" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>AAAGAAGAAGGCCGTACACAAGACAACTACAACTGACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E709716" ref_strand="+" ref_description="SGN-E709716 [FA52DF11]">
      <seq>accatgagaagaaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaaaaaaaaaaaaacaaaaaaaattaaaaggctcggggggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="829" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="160" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="217" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="256" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2103" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="570" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="590"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E709716" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAA</genome_strand>
        <mrna_strand>AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E392380" ref_strand="+" ref_description="SGN-E392380 [TUS-35-L12]">
      <seq>aaagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggaggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="831" stop="2252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1131" g_stop="1279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="206" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="245" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="1951" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="407" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E392380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1131" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="1951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGG</genome_strand>
        <mrna_strand>AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E408446" ref_strand="+" ref_description="SGN-E408446 [PPI-11-I21]">
      <seq>aagaagaaagccgtacacaagacaactacaaccgatgacaaaagactacagagcacgttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttagagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcanaagaattcttaaatgcttttaatagtaagctactttgcccttcaaagcataatcttctattttagcattgctgccttcttctatgtcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="832" stop="2441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1132" g_stop="1279" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="205" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="244" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2139" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="583" r_length="339" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="603"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E408446" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1132" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCT</genome_strand>
        <mrna_strand>AAGAAGAAAGCCGTACACAAGACAACTACAACCGATGACAAAAGACTACAGAGCACGTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTAGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCANAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAGCATAATCTTCTATTTTAGCATTGCTGCCTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E375796" ref_strand="+" ref_description="SGN-E375796 [TUS-15-G4]">
      <seq>aagaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataatcttctatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="832" stop="2421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1132" g_stop="1279" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="205" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="244" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2130" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="585" r_length="341" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E375796" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1132" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTG</genome_strand>
        <mrna_strand>AAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E204164" ref_strand="+" ref_description="SGN-E204164 [cLEC-13-K9]">
      <seq>gaagaaagccgtacacaaaacaactacaactgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagagttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataatcttctatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="834" stop="2421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1134" g_stop="1279" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="203" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="242" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2130" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="583" r_length="341" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E204164" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1134" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTG</genome_strand>
        <mrna_strand>GAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGAGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E392379" ref_strand="-" ref_description="SGN-E392379 [TUS-35-L12]">
      <seq>aagaaagccgtacacaaaacaaatacaattgatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataatcttctatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="835" stop="2421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1135" g_stop="1279" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="202" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="241" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2130" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="582" r_length="341" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E392379" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392379" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1135" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTG</genome_strand>
        <mrna_strand>AAGAAAGCCGTACACAAAACAAATACAATTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E715955" ref_strand="+" ref_description="SGN-E715955 [FB15CH09]">
      <seq>gatgacaaaagactacagagcaccttgaaaagaataggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="865" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1165" g_stop="1279" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="172" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="211" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2112" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="534" r_length="323" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E715955" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1165" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCT</genome_strand>
        <mrna_strand>GATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E285890" ref_strand="+" ref_description="SGN-E285890 [cLES-13-E1]">
      <seq>gacgacaaaagactacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="865" stop="1708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1165" g_stop="1279" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1408" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="157" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E285890" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1165" e_stop="1279"/>
          <exon e_start="1367" e_stop="1408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTA</genome_strand>
        <mrna_strand>GACGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E590466" ref_strand="+" ref_description="SGN-E590466 [44062]">
      <seq>aaaagactacagggcaccttgaaaagaataggtgtcaatgccattcctgctattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttccccttcaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="871" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1171" g_stop="1279" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="166" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="205" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2114" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="535" r_length="330" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E590466" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1171" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTC</genome_strand>
        <mrna_strand>AAAAGACTACAGGGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCTATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTCCCCTTCAAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E312464" ref_strand="+" ref_description="SGN-E312464 [cLEZ-20-O6]">
      <seq>tacagagcaccttgaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaaactattttccccttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="878" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1178" g_stop="1279" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="159" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="198" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2110" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="525" r_length="327" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E312464" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1178" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAAT</genome_strand>
        <mrna_strand>TACAGAGCACCTTGAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAACTATTTTCCCCTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E310212" ref_strand="-" ref_description="SGN-E310212 [cLEZ-8-J8]">
      <seq>gaaaagaataggtgtcaatggcattcctgccattgaagaagtcaacattttcaaggaggatgttgttatccaattcgttaaccccaaagttcaagcatcaattgctgcaaacacatgggttgttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggccctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagaaccacgcttcttaaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttagcttttgagtgttctatttcatgtctattgtgaccacatctcaaaagaattcttaaatgcttttaatagtaagctattttccccttcaaagacttatcttctattttagcaatgcctatttttcaatgtcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="891" stop="2428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1191" g_stop="1279" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="146" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="185" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2123" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="525" r_length="340" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="546" polyA_stop="561"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E310212" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310212" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1191" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGA-CACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGC</genome_strand>
        <mrna_strand>GAAAAGAATAGGTGTCAATGGCATTCCTGCCATTGAAGAAGTCAACATTTTCAAGGAGGATGTTGTTATCCAATTCGTTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTTGTTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GCCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAACCACGCTTCTTAAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTAGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACCACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTATTTTCCCCTTCAAAGACTTATCTTCTATTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E227199" ref_strand="-" ref_description="SGN-E227199 [cLEL-30-K23]">
      <seq>aggtgtcaatgccattcctgccattgaagaagtcaacattttcaaagaggatgttgttatccaattcagtaaccccaaagttcaagcatcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttacatgcttttaatagtaatctactttgcccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="900" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1200" g_stop="1279" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="137" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="176" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2117" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="504" r_length="328" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E227199" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227199" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1200" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTAT</genome_strand>
        <mrna_strand>AGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTACATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E593830" ref_strand="+" ref_description="SGN-E593830 [37068]">
      <seq>atccaattcagtaaccccaaagttcaagcatcaattgctgcaaatacatgggttgtcagtggaaccccccagacaaagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttagagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="958" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1258" g_stop="1279" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1367" g_stop="1423" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="79" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="118" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1790" g_stop="2111" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="429" r_length="311" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E593830" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1258" e_stop="1279"/>
          <exon e_start="1367" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAGTAACCCCAAAGGTATAAACATAATCCATGTTTCACATAGTTTAGTTATCTGTCGCATTATTGCCATTCTAATAACCTTTTGTTTCTGATTCTGTATAGTTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATT-CTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATC</genome_strand>
        <mrna_strand>ATCCAATTCAGTAACCCCAAAG.......................................................................................TTCAAGCATCAATTGCTGCAAATACATGGGTTGTCAGTGGAACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTAGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGA------TGC--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E238880" ref_strand="-" ref_description="SGN-E238880 [cLEL-9-K5]">
      <seq>tcaattgctgcaaacacatgggtagtcagtggtaccccccagacaaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="1075" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1375" g_stop="1423" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="88" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1790" g_stop="2103" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="402" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="403" polyA_stop="436"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E238880" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238880" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1375" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAA</genome_strand>
        <mrna_strand>TCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E610315" ref_strand="+" ref_description="SGN-E610315 [57473]">
      <seq>ggttgttagtggtactccccangacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="1359" stop="2398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1395" g_stop="1423" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.828"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="69" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1790" g_stop="2098" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="383" r_length="314" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E610315" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1395" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTCAGTGGTACCCCCCA-GACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCT</genome_strand>
        <mrna_strand>GGTTGTTAGTGGTACTCCCCANGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E588292" ref_strand="-" ref_description="SGN-E588292 [41842]">
      <seq>ttagtggtactccccagacaaagaaattgcaggatattcttcctcagatcattcaccagttgggtcctgataatttggagaatttgaagaagttggccgagcagttccagaagcaggcacctggtgctgccgatgcagctgcaggtgctgttgcagcacaggaagacgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgctgccgaggagagccacacttcctgaagtttttgttgaattcccttactttccaatgttctgaaatcagattttaccttggcttttgagtgttctatttcatgtctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttccccttcaaagaattatcttctattttagcaatgcctattcttcaatgtcatggtaaaaaaaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="1359" stop="2428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1400" g_stop="1423" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="63" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1790" g_stop="2123" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="402" r_length="339" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="440"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E588292" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588292" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1400" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTGGTACCCCCCAGACAAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAA----CTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCAT-TCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGC</genome_strand>
        <mrna_strand>TTAGTGGTACTCCCCAGACAAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAGATCATTCACCAGTTGG..........................................................................................GTCCTGATAATTTGGAGAATTTGAAGAAGTTGGCCGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCCGATGCAGCTGCAGGTGCTGTTGCAGCACAGGAAGACGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCTGCCGAGGAGAGCCACACTTCCTGAAGTTTTTGTTGAATTCCCTTACTTTCCAATGTTCTGAAATCAGATTTTACCTTGGCTTTTGAGTGTTCTATTTCATGTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTCCCCTTCAAAGAATTATCTTCTATTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E281925" ref_strand="+" ref_description="SGN-E281925 [cLES-2-F20]">
      <seq>aaagaaattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcagatgtggctgcaggtgctgttgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaatctactttgcccttcaaagcataatcttctatttcagcattgctgccttcttctgtcataatatttgttattctatactagctagtctttatagtaagaatatttcatagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="1359" stop="2497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1419" g_stop="1423" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="44" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1790" g_stop="2206" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="461" r_length="417" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E281925" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1419" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTATCTGTTATT</genome_strand>
        <mrna_strand>AAAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E595587" ref_strand="+" ref_description="SGN-E595587 [38863]">
      <seq>aagaaattgcaggatattctccctcaaattattcaccagctgggtcctgataatttggagaatttaaagaagttggctgagcagttccagaagcaggtacctggtgctgcagatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="1359" stop="2409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1420" g_stop="1423" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.719" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="43" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1790" g_stop="2105" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="348" r_length="305" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="365"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E595587" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E595587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1420" e_stop="1423"/>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTATGTGCTCTTCTCTTTCCTCATGCCTTGCACCTTATGAATGTAACCTTCACATATGATTTATTAGTTATAACTATGTCACGAAACAAATTTGATTATGAGACTAGCATTCTTTCTGTTGGGTCTCCAACACATGAGTCTTGATTGTTAGCGGATTTGTGCTTCCTTACGGTCCTTTTGATTATGTTTTGGGGATGCGCATAAGAATTTCTAAGCAATGTTTCTTTCCTCTTGCAGAATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGC</genome_strand>
        <mrna_strand>AAGA.............................................................................................................................................................................................................................................AATTGCAGGATATTCTCCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAATTTAAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGTACCTGGTGCTGCAGATG------C--G-GC---TGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E239378" ref_strand="-" ref_description="SGN-E239378 [cLEL-9-K5]">
      <seq>aattgcaggatattcttcctcaaattattcaccagctgggtcctgataatttggagaacttgaagaagttggctgagcagttccagaagcaggcacctggtgctgcaaatgtggctgcaggtgctgttgcagcccaggaagatgatgatgatgtcccagaacttgtggctggtgaaacttttgaagctgcggctgaggagggccatacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcattctattgtgacccatctcaaaagaattcttaaatgcttttaatagtaataaactttgcccttcgcgcaaaaaaaaaaccaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="1361" stop="2400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1661" g_stop="1699" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1790" g_stop="2100" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="350" r_length="311" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="365"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E239378" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239378" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1661" e_stop="1699"/>
          <exon e_start="1790" e_stop="2100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGGGTATGTGCCATTTTTTAGGCTTACATTGAGTCGTTAGAAACCTTGAACAATTAAGTATATGTTTTGACTGATGAAAATTACAATTTTCAGGTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTC</genome_strand>
        <mrna_strand>AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG..........................................................................................GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAAATGTGGCTGCAGGTGCTGTTGCAGCCCAGGAAGATGATGATGATGTCCCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACCCATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATAAACTTTGCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E611998" ref_strand="+" ref_description="SGN-E611998 [61756]">
      <seq>gatgcggctgcagcacaggaagatgatgatgatgtaccagaacttgtggctggtgaaacttttgaagctgccgctgaggagggccacacttcctgaaggttttgttgaacttactttccagtgttctgatattagattttgccttagcttttgagtgttctatttcatttctattgtgacacatctcaaaagaattcttaaatgcttttaatagtaagctactttgcccttcaaagcataatcttctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="1572" stop="2419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1870" g_stop="2120" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E611998" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1870" e_stop="2120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCA-TTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTC</genome_strand>
        <mrna_strand>GATGCGGCTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCCGCTGAGGAGGGCCACACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAAGCTACTTTGCCCTTCAAAGCATAATCTTCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E393854" ref_strand="-" ref_description="SGN-E393854 [TUS-41-H1]">
      <seq>ggaaaaaaaagttattttgtacttagttacaactccccagtagaaaataagttgttgcaatgaccctactggcatccaataggctcatggggtacttagagatcacataacattcaaaattttgaatactgttagaattcaggtagccacatttttagttagtatcaattagcataactgaaactggtctattattatacagggttacagttctgtacattatattttgttgcaaagtccactgctgccatcttctggctttccagctaaaactagaaattcatccttgtgatcgattctcacatgcttccactgtttgcttcactctcaactatcagtactactgtgactagcaacgttgtcatcatagtgatcgccagatggtcaatcttgttcagggcataacgactccttaccccgattaatagataattcttggaggggtggactactgattttatggatagtcaaagtagattactcaacctctgagttactatatcatttgttgcttctactgtttccttcttacacttgcaaaatatgcaaaatcagccttcatcatacggtggtactgctaattatcagctctctaggtataagttttcataagtagaatgatcctgcagacatagctaaacagaagttgtaaagttgtgctctgatacataaggattggaatagaggattgacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="2693" stop="3984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2992" g_stop="3684" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="713"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E393854" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393854" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2992" e_stop="3684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAAAAAGT-ATTTTGTAC-TAGTTACAACTCCACAGTAGAAAATAAGTTGTTGCAATGA-CCTACTTGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</genome_strand>
        <mrna_strand>GGAAAAAAAAGTTATTTTGTACTTAGTTACAACTCCCCAGTAGAAAATAAGTTGTTGCAATGACCCTACTGGCATCCAATAGGCTCATGGGGTACTTAGAGATCACATAACATTCAAAATTTTGAATACTGTTAGAATTCAGGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E393539" ref_strand="-" ref_description="SGN-E393539 [TUS-39-G2]">
      <seq>ccaataggctcatgtggtacttagagatcacataacattcaaaattctgaatactgttagaactcatgtagccacatttttagttagtatcaattagcataactgaaactggtctattattatacagggttacagttctgtacattatattttgttgcaaagtccactgctgccatcttctggctttccagctaaaactagaaattcatccttgtgatcgattctcacatgcttccactgtttgcttcactctcaactatcagtactactgtgactagcaacgttgtcatcatagtgatcgccagatggtcaatcttgttcagggcataacgactccttaccccgattaatagataattcttggaggggtggactactgattttatggatagtcaaagtagattactcaacctctgagttactatatcatttgttgcttttactgtttccttcttacacttgcaaaatatgcaaaatcagccttcatcatacggtggtactgctaattatcagctctctaggtataagttttcataagtagaatgatcctgcagacatagctaaacagaagttgtaaaatggtgttctgatacataaggattggaatagaggattgacaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="2764" stop="3984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3064" g_stop="3684" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="638"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E393539" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393539" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="3064" e_stop="3684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</genome_strand>
        <mrna_strand>CCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTTTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAATGGTGTTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="4792" stop="5843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5092" g_stop="5529" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5092" e_stop="5529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAAAACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAGCTAAGGAATGAAAG-AAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATATTTTTTTT-AAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAAGGCATATATAAACCACTTTTATAACGAGAGGTATATCAGCTCCAAATGACAAAATTGAGAGGTATATCAGACCCTTTTCC</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E321589" ref_strand="+" ref_description="SGN-E321589 [cTOB-25-E18]">
      <seq>ttggaaatcatcctaaagttcacatttggaacggtcaaggtacagctgatgcaatgtttgtattcctgtccctcgcagaagagaaatgtctcttcaatgagaaaataaacagcaaaaagaaacaagtaacagaagtttgagctttttgatgagctaaacaaaagggtgttctgatgtcaaatttaattgttactcagcagatcttgtatagagattcaacaaagaaatgggtagtatagtttgctattaaggaaaggataatcagagagatactttaatctttttccctcgaagaggagatattgctgatacttcaattttcgcctaattctcataattatttgtatttccttctgatgccactgacgtaatgtatacgagccttttacattaatacctttcaggtccaaatccacatatgggacatttggcttttgcagatgcttttgttattactgctgactcagttagtatgttaagcgaggcttgcagtacggggtaagttggcctttatgctgactcttttcaattcgatgtcccttttctgttatccttttcattagcatttcatcaggaaacctgtttatgtaattggtgctgagcgatgtacgtggaaattcagagacttccatcaatccttgaaaaatcgaggagtggttcgtccattccttggaaaagaaatatatctgaaagttggagctatagtcccctgaatgatactaaggaggctgctgcgcatgtgattaccgcactagccgaacgaggatgggcgatggncatcatattctactctactaaagtagtagtagtaatttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="16886" stop="18680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17186" g_stop="17868" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17869" i_stop="18242" i_length="374">
            <donor d_prob="0.890" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18243" g_stop="18380" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="819" r_length="137" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E321589" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17186" e_stop="17868"/>
          <exon e_start="18243" e_stop="18380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGGGTAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGTTATCCTTTTCATTAGCATTTCATCAGGAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAGAGACTTCCATCAATCCTTGAAAAATCGAGGAGTGGTTCGTCCATTCCTTGGAAAAGAAGATGTGAGTAATAATTCTATTAATTTATATTCTAGGCTCCTACTAGGCACAAGGATAACATCACCCTTCTAGTTTTATTCTCCTTCGTTGAGTTTTTGCATGGACAGAAATGACATACTGATAAATATTGGTTTGCAGGAAGATAACTGTACAATATATCCTTCTCTATCCTCTAAAAGCATTATATAGTATTGAAATTCAATTAGAAGTGGTTAATTTTGCATGCTATTTGACGAAATATCTTCTATCTCTGGCACATCTTTTATTTGGAATTCAAGTGAATTCACCCGTGAACATTATGATGCTTACAGTCACTGATCATGAAAGAGCATGATGCCTGCAATCCAGAGTTTTGACTTCATCCTCTTATTTTGTAGATATCTGAAAGTTGGAGCTATAGTCCCCTGAATGATACTAAGGAGGCTGCTGCGCATGTGATTACCGCACTAGCCGAACGAGGAT-GGCGATTGCCATCATAATTTCTACTCTACTAAAGTAGTAGTAGTAAATTGATC</genome_strand>
        <mrna_strand>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGGGTAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGTTATCCTTTTCATTAGCATTTCATCAGGAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAGAGACTTCCATCAATCCTTGAAAAATCGAGGAGTGGTTCGTCCATTCCTTGGAAAAGAA-AT......................................................................................................................................................................................................................................................................................................................................................................................ATATCTGAAAGTTGGAGCTATAGTCCCCTGAATGATACTAAGGAGGCTGCTGCGCATGTGATTACCGCACTAGCCGAACGAGGATGGGCGATGGNCATCAT-A-TTCTACTCTACTAAAGTAGTAGTAGTAATTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E321588" ref_strand="+" ref_description="SGN-E321588 [cTOB-25-E16]">
      <seq>ttggaaatcatcctaaagttcacatttggaacggtcaaggtacagctgatgcaatgattgtattcctgtccctcgcagaagagaaatgtctcttcaatgagaaaataaacagcaaaaagaaacaagtaacagaagtttgagctttttgatgagctaaacaaaagggtgttctgatgtcaaatttaattgttactcagcagatcttgtatagagattcaacaaagaaatgggtagtatagtttgctattaaggaaaggataatcatagagatactttaatctttttccctcgaagaggagatattgctgatacttcaattttcgcctaattctcataattatttgtatttccttctgatgccactgacgtaatgtatacgagccttttacattaatacctttcaggtccaaatccacatatgggacatttggcttttgcagatgcttttgttattactgctgactcagatagtatgttaagcgatgcttgcagtacagaggaagttggcctttatgctgactcttttcaattcgatgtcccttttctgttatccttttcattagcatttcatcacgaaacctgtttatgtaattggtgctgagcgatgtacgtggaaattcagagacttccatcaatccttgtacaatccaggagtggttcgtccattccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="16886" stop="18157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17186" g_stop="17857" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E321588" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17186" e_stop="17857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGGGTAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGTTATCCTTTTCATTAGCATTTCATCAGGAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAGAGACTTCCATCAATCCTTGAAAAATCGAGGAGTGGTTCGTCCATTCCTTG</genome_strand>
        <mrna_strand>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGATTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCATAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGATAGTATGTTAAGCGATGCTTGCAGTACAGAGGAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGTTATCCTTTTCATTAGCATTTCATCACGAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAGAGACTTCCATCAATCCTTGTACAATCCAGGAGTGGTTCGTCCATTCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E321825" ref_strand="+" ref_description="SGN-E321825 [cTOB-25-F16]">
      <seq>ttggaaatcatcctaaagttcacatttggaacggtcaaggtacagctgatgcaatgtttgtattcctgtccctcgcagaagagaaatgtctcttcaatgagaaaataaacagcaaaaagaaacaagtaacagaagtttgagctttttgatgagctaaacaaaagggtgttctgatgtcaaatttaattgttactcagcagatcttgtatagagattcaacaaagaaatgggtagtatagtttgctattaaggaaaggataatcagagagatactttaatctttttccctcgaagaggagatattgctgatacttcaattttcgcctaattctcataattatttgtatttccttctgatgccactgacgtaatgtatacgagccttttacattaatacctttcaggtccaaatccacatatgggacatttggcttttgcagatgcttttgttattactgctgactcagttagtatgttaagcgaggcttgcagtacggggtaagttggcctttatgctgactcttttcaattcgatgtcccttttctggtatccttttcattagcatttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="16886" stop="18057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17186" g_stop="17757" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E321825" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17186" e_stop="17757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGGGTAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGTTATCCTTTTCATTAGCATTTCATC</genome_strand>
        <mrna_strand>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGGGTAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGGTATCCTTTTCATTAGCATTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E276230" ref_strand="-" ref_description="SGN-E276230 [cLEN-21-J8]">
      <seq>aataataaaacattgtttgtgagcttggtaggatcgtacttgaaaacatgtgttgcaccggggctagggaacaagatatatttttcaatgtttcacaatgaaaatggtgttttctattgtttagtcaatcgcaaatattactcttctgattatttgggcatcaaaacttattcaagtccaaatattttcaacttcattcgaccaatatcatgcattttggatcgaatcagaggatgagtgatcgtatagttccatttttgttcttatcggagacattcccggagccacggggattaattaggtatgttgttgttggcactggtgctaaaaattactttttatgacatattaccgtgtaatagtgccaatatgtggagaaatccaaaagataaagtgtcattagtatattttgtgtatcaaattcttttaattaataaagtagtttttatttaaaaaaaaaaaaaaaaaaanaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="-" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="25448" stop="24394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25148" g_stop="24697" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="473"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="-" ref_id="SGN-E276230" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276230" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25148" e_stop="24697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATAAAACATTGTTTGTGAGCTTGGTAGGATCGTACTTGAAAACATGTGTTGCACCGGGGCTAGGGAACAAGATATATTTTTCAATGTTTCACAATGAAAATGGTGTTTTCTATTGTTTAGTCAATCGCAAATATTACTCTTCTGATTATTTGGGCATCAAAACTTATTCAAGTCCAAATATTTTCAACTTCATTCGACCAATATCATGCATTTTGGATCGAATCAGAGGATGAGTGATCGTATAGTTCCATTTTTGTTCTTATCGGAGACATTCCCGGAGCCACGGGGATTAATTAGGTATGTTGTTGTTGGCACTGGTGCTAAAAATTACTTTTTATGACATATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATAAAGTGTCATTAGTATATTTTGTGTATCAAATTCTTTTAATTAATAAAGTAGTTTTTATTTA</genome_strand>
        <mrna_strand>AATAATAAAACATTGTTTGTGAGCTTGGTAGGATCGTACTTGAAAACATGTGTTGCACCGGGGCTAGGGAACAAGATATATTTTTCAATGTTTCACAATGAAAATGGTGTTTTCTATTGTTTAGTCAATCGCAAATATTACTCTTCTGATTATTTGGGCATCAAAACTTATTCAAGTCCAAATATTTTCAACTTCATTCGACCAATATCATGCATTTTGGATCGAATCAGAGGATGAGTGATCGTATAGTTCCATTTTTGTTCTTATCGGAGACATTCCCGGAGCCACGGGGATTAATTAGGTATGTTGTTGTTGGCACTGGTGCTAAAAATTACTTTTTATGACATATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATAAAGTGTCATTAGTATATTTTGTGTATCAAATTCTTTTAATTAATAAAGTAGTTTTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E709918" ref_strand="+" ref_description="SGN-E709918 [FA53CF01]">
      <seq>cgtttttttacatggaggctgcattgtggtcagatggtataccatcggacatactcggattaatatcatcacgtcttattgctgcggaatattttatttttcgtgctgtttgtaaaaaatggagacacacacccgttacccctccacattgtcctgctcaatcagaaaaatcgcctcgtttgttcacattgcgtggagatactggaatagttgatttctttcatcccgtgtataattttatgacaactacgtctattccaattccgaaattaatgaattctcgaattcgaagttcaaaaggtaattggttactgatgagtcatggtgattgcgatatgttttttttcaattttattagcaatgagataattgaacttcctaatctacaaggggagagtcgatatatcacttgttggatattttcatgtcctccaaactcgtcgtcatctgcttgctttgttgttggtttggactacagtggtaatcctccagacgtttgcatcatcaaaattggagagactaattggacgtttcataacttaagtgatctagcagatacatataaacattttgcattaacgggatgcagtagtccaatattttttagaaataatattgtttatgtagtgggagataaaggaaatctgggtatacttaccatcaatgaaaactcaactcctagttgggaattttatggtaaaccatttcgaggtagaagagtaaagtcaatcaactatgttttcacggcagaagatgtcgaaaacaaaggaatattagttgtatttctatctcaccacgaagggaaagtagaggtttggaggtacaaaatgaatgggaaaggtgttggagagggaaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="-" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="26319" stop="24860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26021" g_stop="25160" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="862" r_length="862" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="-" ref_id="SGN-E709918" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26021" e_stop="25160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTACAATGGAGGCTGCATTGTGGTCAGATGGTATACCATCGGACATACTCGGATTAATATCATCACGTCTTATTGCTGCGGAATATTTTATTTTTCGTGCTGTTTGTAAAAAATGGAGACACACACCCGTTACCCCTCCACATTGTCCTGCTCAATCAGAAAAATCGCCTCGTTTGTTCACATTGCGTGGAGATACTGGAATAGTTGATTTCTTTCATCCCGTGTATAATTTTATGACAACTACGTCTATTCCAATTCCGAAATTAATGAATTCTCGAATTCGAAGTTCAAAAGGTAATTGGTTACTGATGAGTCATGGTGATTGCGATATGTTTTTTTTCAATTTTATTAGCAATGAGATAATTGAACTTCCTAATCTACAAGGGGAGAGTCGATATATCACTTGTTGGATATTTTCATGTCCTCCAAACTCGTCGTCATCTGCTTGCTTTGTTGTTGGTTTGGACTACAGTGGTAATCCTCCAGACGTTTGCATCATCAAAATTGGAGAGACTAATTGGACGTTTCATAACTTAAGTGATCTAGCAGATACATATAAACATTTTGCATTAACGGGATGCAGTAGTCCAATATTTTTTAGAAATAATATTGTTTATGTAGTGGGAGATAAAGGAAATCTGGGTATACTTACCATCAATGAAAACTCAACTCCTAGTTGGGAATTTTATGGTAAACCATTTCGAGGTAGAAGAGTAAAGTCAATCAACTATGTTTTCACGGCAGAAGATGTCGAAAACAAAGGAATATTAGTTGTATTTCTATCTCACCACGAAGGGAAAGTAGAGGTTTGGAGGTACAAAATGAAT-GGAGAGGTGTTGGAGAGGGAAGAAATAA</genome_strand>
        <mrna_strand>CGTTTTTTTAC-ATGGAGGCTGCATTGTGGTCAGATGGTATACCATCGGACATACTCGGATTAATATCATCACGTCTTATTGCTGCGGAATATTTTATTTTTCGTGCTGTTTGTAAAAAATGGAGACACACACCCGTTACCCCTCCACATTGTCCTGCTCAATCAGAAAAATCGCCTCGTTTGTTCACATTGCGTGGAGATACTGGAATAGTTGATTTCTTTCATCCCGTGTATAATTTTATGACAACTACGTCTATTCCAATTCCGAAATTAATGAATTCTCGAATTCGAAGTTCAAAAGGTAATTGGTTACTGATGAGTCATGGTGATTGCGATATGTTTTTTTTCAATTTTATTAGCAATGAGATAATTGAACTTCCTAATCTACAAGGGGAGAGTCGATATATCACTTGTTGGATATTTTCATGTCCTCCAAACTCGTCGTCATCTGCTTGCTTTGTTGTTGGTTTGGACTACAGTGGTAATCCTCCAGACGTTTGCATCATCAAAATTGGAGAGACTAATTGGACGTTTCATAACTTAAGTGATCTAGCAGATACATATAAACATTTTGCATTAACGGGATGCAGTAGTCCAATATTTTTTAGAAATAATATTGTTTATGTAGTGGGAGATAAAGGAAATCTGGGTATACTTACCATCAATGAAAACTCAACTCCTAGTTGGGAATTTTATGGTAAACCATTTCGAGGTAGAAGAGTAAAGTCAATCAACTATGTTTTCACGGCAGAAGATGTCGAAAACAAAGGAATATTAGTTGTATTTCTATCTCACCACGAAGGGAAAGTAGAGGTTTGGAGGTACAAAATGAATGGGAAAGGTGTTGGAGAGGGAAAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E723800" ref_strand="+" ref_description="SGN-E723800 [FC21DH12]">
      <seq>aaaatacttttcccactccactctctacccctcaaaattttcttctccgatcgacaaatcgattctccggttctctctataatctatctgcttctgtacgatcaatcggaaagttctagaagaagatgtcgtcgaattcaaagttaatgccgaatctggatgagcgaagtacgaagatgctaaacctcactgtgctacagagaatcgatccgcgtattgaggagatcctcatcacagctgctcatgttacgttgtacgagttcaacgtcgacctcaatcaatggagccgcaaggaggttgaaggttctttctttgtagttaagaggagtgctcagccaaggttccagttcattgttatgaaccgcaggagtgcagcagaaaatatggtggaagatctcttgggagactttgagtttgaggttcaggttccatacttgttgtatcgcaatgcagcccaagaagtcaatggtatttggttttacaatgcacatgaaattgaggaggttgcagatctcttcggcagaattttaggtgaatactcaaaggttcccctgaagccacagctaagaaaaagtgagtttgcagatcatgaggtggtcccaatgagtacagcaatagaagggacatctggaccagcatttaccacctctacggatgggtttggtgctgatgattcttcctttatgaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="30929" stop="37225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31229" g_stop="31512" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31513" i_stop="32576" i_length="1064">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32577" g_stop="32617" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="325" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32618" i_stop="33961" i_length="1344">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33962" g_stop="34011" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="375" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34012" i_stop="34174" i_length="163">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.559" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34175" g_stop="34322" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="523" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34323" i_stop="35167" i_length="845">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35168" g_stop="35218" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="574" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35219" i_stop="36806" i_length="1588">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36807" g_stop="36925" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="693" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E723800" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31229" e_stop="31512"/>
          <exon e_start="32577" e_stop="32617"/>
          <exon e_start="33962" e_stop="34011"/>
          <exon e_start="34175" e_stop="34322"/>
          <exon e_start="35168" e_stop="35218"/>
          <exon e_start="36807" e_stop="36925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGGGTTCGTAAACTTGATTTTCGTTTAAATTTCTGAAAAGGAGATTTATATTTCATCGAGTTTAGGAAATAGAGGCTAATTTGGTGTGATAATTGTTGAATTAAATTTGGCATAGTCAGTATTCATTGTTTTAATATCCAGTAAGTATTGAATTTTGTTTTATGTAGATATATGTGAATATCTGAGTCTCTATGCGTATATTGATGGATTTGATTGTAAAAAGTGATTTGAAATAACACAGTAAATTTCAGAATTGATCTCCTTATAGTTCGCTGTTACTTCAAAAATTTGTGCCTTATTGTGTGTTGTGGTATGTATGGACTTCTGTTTTATGTTGATATATGTGAATGTTTGAGTGATTTCTGGAATATTAATCTCTCTATGTGTATATTGATGGATTTGATTGTAAAAAATGTGCCTTGGGATAGTTCTACACGGTAAACTTCATAATTGATCTTCTTGTACTTTTTTGCTTTTTGCTGTTTTACAGAAACTAGTGTCTTATTGTGTGTTGCCGTGTGTATGTAATACTGTTTTATGTAGATATATGTGAATATTTGAGTGATTTCTAGGAGTATACATTGATCTCTCTATGTGTATATTGATGGATTTGATCATTAAAGTTCCTATGGATAGTTCTGTAGAGTAAATTTCATAATTGATCTCCGTATAGTTCTCTGTTGTTACTATAAAAACTTGTGCCTTATTATGTGTTGCAGAATGTATCGAATGTTGATTCAGTTGTGCGTGATTTAGAAAGTCACGGTGTATACTTTTTAATATGTGCATTAACTTAGAAAACTTGCTGAAATGATCTTAACACCGAAGTTTGCCTTAATCCTAAGCTAGTTGCAATCAACAAATAAATCTCACTTGGACGCAATTGTCATGATATACATCATTGGATGAAAAGGTGGTAAATTAGATGTTTTGGACAAATATATTCCAAGGGATCCGCTGTGTACTCCTGCTTCCCGCCTTTTTGCCTATTTATGAAGCAATCAATGGGTCTTCTTGAAATATTGTCTTAAAGAATAAATTGATTGAATGTTTAATTTGGATTTCAGAGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAGGTATGCTTGCAATATTCCATGTATCTGGTTTTGTTTTCTATTTAAATATAAAGTGTTTATATCTGCCTTTGTTTCATATGGCGGTGTATCAAATTTAGCAGGTATTTTCTGTATGGTGCTTGTCTGAACATTCATATTCATGGCAAAGTTCCAAGCAAACTGGTCTAGCCCCAATTTAGGAGCTCAAGGGCTCAGAGTTGATTCCAGTGGGGGTGAACCAGCCCAAACCTGACCTTAAACCCTTGGGAGGGGTATACTCTCGGACCCCTTTTTTCCACTAAGAAATTTGATTGAAGAATCTAGAGACGATTTATATAAAAGAAAATTGTGTTCCCTTAGAATAACTCACTTACACACAAGTAGATGAACATAAATTAAAAAAATAATTGAAGAAAGAGATTGGACAATAGTAAGAAATTAGAAATATGGACAATATTTAATGCATTGAAATTGAATTAATATCCTTAACTTGCCTAGATACCAAACAAGCACATCTATTCTAAAAGGGTTGGTGGGTTCGTTTTGCTTCTGAAATTGACATAGTTCTCATCTGTATAAATAAGCAATAACTCTTCTAAATTGTAACCCTGAATGTTTCGGTATGGTGTCAATGAATTCAATTAGGGAATTTGGGGTTAATGTGTAGGCATCTAACAAGCCGTTGCCACTCCCCCCCCCCCCCTCCCCCCTCTTTGAACACCGTTCAGTCCATCGGCCTTGTGCTATGTGGCTGGCCTAGCAATTCCCGCGGGTCAGACACCCCTTCATGGGGTTTATGTTGATCGTGGATTGGACAAGCCTACTCAGGGGTCATTTGGTAGAATGTATTAGGAAAAATAATGCATTTATTGGCCTTGTGTATTACTATTACGTTGCTCGTTACTCTTTTCCAATCTATGCATTAGTTATACACTATATTGTGTATTAAGGAATGCATTACTAATACTATGGATTTGTAGGTATTAATAATGCAATGGTTTACACTCTACCAAACCACCCCTTAAAGTTAAATTTCTTTTTATTTTCTTATGACAAGGGAACCCGCAGCCGCTACCCTTTGGGTGCGCATAGGGTAAAACTCCTGCTCCTATGCAATAGCTCGCAAACTACATAGGAGAGGTAACCCGCACCCGGATGTCTAGTGTTTTCTGAAAAACAGTTTCTAATTCAGCTTTTGTCCGAAACTATTATCACGCTGTGCAAATAGCATATAATTATGTGATGGCTTCTTTGGCTTTTAGGTTATTTTTCATGTAATATTTTGGGAATCTGATGGATTTGATGGATTATGGCCTAAGGAAGTTGAATTACCAGATATCGTTGTTGTTGGTTATGTTATTTTAGGAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAGGTATTATCCCATTTCTTCTTTTAATAATATATCTCAGGCCTCTCCTTTTCAATTCATAGGGCAAAACATTATGAATTCTTTATTTTAAGTTGTCCCTTTTATGATGTTCGAATTAATGCCTCATATGAATGATTTCCTTTTTGACATCTAAGTTCATATGAAGCAGAAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAGGTTGGCATCTTCTTCAGTTGAATTATTCTTGTATACATTTATGATAGAGAGCAAAACAAATAAGTGAACAACCTACATAGAGAAAATGTTGTTAAGGGCTGGTTATTATTCTTGTATTTCGAATTACTTGTGGTTGACTGTTATTATTGGAACTAGGCTGAATTGATTTTTATAATGGATGGTAGTATGAGTTGTCTTTGTCAAGGATAATCATGACAGGGTCTTTCTATCAAAAGACATTAGGTTGAAGGCTGCTATAAATGAAATATTTCAAATTTCAAAGCTTGTTTAGTCAAATTATGACATACCTTAGGCTTTAAATATGTGATCTTAATGACATTTAACATTTATTTTAGCGCGATGGTTATGTTGCCAGTTTCTTTGGACTATTTTTCTCTTGAGCCGAAGATCTATTGGAATAATCAATCTCTCTACCTCTGAGGTAGGGTAAGGTTTGTGTACACTCTACCCGCCCTAGATCCACTTTGTGGGACTATTCTGGGTATGTTGTTGTTGTTGGTTATGTTGCCAGTCTCTGTTAAGTATTCAGTTCTGTGTTTTTGTTAATGGAGGTGTCTAATTTGTATGCAATCCATTTCGTCTTTGTGTTACATGATATAATGGCATTTATCTTATAGAAATACCAGTTAGTTATTGTGTTATATCGGTAAGTAACTTGATAAAGAAGTTTGTTATATCGGTCGATGGAAATGACATCAAAACGATTTATTGTTAGTTCGTTTTAGTGGTGCAGGGCATGTGAAGTAATTGGGTCATTTTTCTTACGTAATCATGGCGCATAATCTGCAACTTGTATAATTTTACTTTGATGTGGTGGATTCCAGAATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAGGTGCGGCGTCATTGATTCTTCCCCTGGTTCCCTTTTTTCTTTTTCTGTGAATTAAGATGTTTGTCAAGTGATTTCCTTATAAGCACAAGTTATTTGCCACAACTCATGAATATTCTTGTTTCTGGTGAAGCTATAGCATTTCCATATTTTAGTACATGGTAAGCAACTGTTTCATTGCTACAGCATGATAGAAGATAAGTACTAAGAATCAGTTTGATCTAAGGCGTAAGAAAAATAATCTCTGCAAAATTGTGATTATCAATTGTTGGTTCCTATGTAATCATACATGTATTATTTTATGTGGAATATCAATACGCAGATTAGTACTCAACCTTTTAAGTGTTGTGTTATGTTCTTAGTTGAGTTTGTATGAATTCCAAGTTATTTTAGGTCTTCAAAGATTTTTTCCTTTGATATGTGAATCGGTGAATGTATTCCATCTATTTTTTAGCACTCTTAATTATCCCAACAATGTGACAACAGATTAGTTAATTTGGAAGTCTTCGTGAGATTAATTGGTGCAATCTCTGATGACCTCTCTCATGTCCTTATGCAATGACACTTGCACCCTCTAGGGGATGGGATCATTTCTAATCATGTCTAATTTTGTATGATGATATATCTATCCTAACATCTGTATTTTAACGGCACTTGTTTCCCAACATTCACTTTTATATAAATAAACCTTGTTGGCCTTAGAATTGGTCTGTAGAACTTTTTTGTCCCTTTGATAGGTTTCATATCATATTTTGTTCCACTTTTGTAGCATTCCTCAGCTACAACTAGCCTATTTTACTTCAATATATTCATCAATCAAGTCGTTCTTCTAAAATATATACATTTAATTAATTTTTAATTCGATGATAAAACCAATATATACATTCCAATTAAATACTAGTGCCCCCCCCCCCCCCCCTTAAAAACTATTACATCCTTAAGAGAAAGACTGCAAAGAAATTATCTAATTCCCCTATGCCAGATGGATACATCTCCTGGTGTCGGATAATTTTTCTTTATAAATGGATATAAGGAGTACATATCACAATAGTACTTAAGCAGATGTTTCTTTTACTTTTAGTAAATATATTTAAAGTAAGCTAGTTAACCTACAAGTTTGAGTTTTCCTATTGGCTGTAGGAAACTATCATGGTAAGTGAGACAACTTTAACCAATATGAATATAAGTCAATAATATGGATGCTGTTGGCAACACTTCCTGCTCATTTCTTTGCTTGTGGAGAGAACATATAGCAGAATCTGAACTTTTTACTTTCCTAGAGTTGGTCTTTCATTTATGATTTCTCATAGATCTTCAGGATCCAACTTAAGCAAAGGCACTTACGGAAGAAAAGAGGAAATAGAGAAATAATCAATGACTTTGTTATCTTGTATCCATTGTCAATTTTCCCTTGTCAGCATATTTGTCCAGAAGGGGTGACTAAATCAATGTTTGTTACTCTTATAAAAAAAGGTCAATGTTTGTTGCTCTTCAGCTATTAATTTCTGTGTTTCTTGATCCTCCCCCCTTCTTTGGTGCAGTTTTGTTTCTACTCTAATTTTTAACTTTTCCCTGATGTTTTTAAGTGCAGTGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTTCCTTTATGAACTTTT</genome_strand>
        <mrna_strand>AAAATACTTTTCCCACTCCACTCTCTACCCCTCAAAATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAG...................................................................................................................................................................CAGAAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTTCCTTTATGAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E369683" ref_strand="+" ref_description="SGN-E369683 [TUS-25-P8]">
      <seq>aatacttttcccactccactctctacttctccatattttcttctccgatcgacaaatcgattctccggttctctctataatctatctgcttctgtacgatcaatcggaaagttctagaagaagatgtcgtcgaattcaaagttaatgccgaatctggatgagcgaagtacgaagatgctaaacctcactgtgctacagagaatcgatccgcgtattgaggagatcctcatcacagctgctcatgttacgttgtacgagttcaacgtcgacctcaatcaatggagccgcaaggaggttgaaggttctttctttgtagttaagaggagtgctcagccaaggttccagttcattgttatgaaccgcaggagtgcagaaaatatggtggaagatctcttgggagactttgagtttgaggttcaggttccatacttgttgtatcgcaatgcagcccaagaagtcaatggtatttggttttacaatgcacatgaaattgaggaggttgcagatctcttcggcagaattttaggtgaatactcaaaggttcccctgaagccacagctaagaaaaagtgagtttgcagatcatgaggtggtcccaatgagtacagcaatagaagggacatctggaccagcatttaccacctctacggatgggtttggtgctgatgattcttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="30931" stop="37214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31231" g_stop="31512" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31513" i_stop="32576" i_length="1064">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32577" g_stop="32617" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="323" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32618" i_stop="33961" i_length="1344">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33962" g_stop="34011" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="373" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34012" i_stop="34177" i_length="166">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34178" g_stop="34322" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="518" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34323" i_stop="35167" i_length="845">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35168" g_stop="35218" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="569" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35219" i_stop="36806" i_length="1588">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36807" g_stop="36914" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="677" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E369683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31231" e_stop="31512"/>
          <exon e_start="32577" e_stop="32617"/>
          <exon e_start="33962" e_stop="34011"/>
          <exon e_start="34178" e_stop="34322"/>
          <exon e_start="35168" e_stop="35218"/>
          <exon e_start="36807" e_stop="36914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGGGTTCGTAAACTTGATTTTCGTTTAAATTTCTGAAAAGGAGATTTATATTTCATCGAGTTTAGGAAATAGAGGCTAATTTGGTGTGATAATTGTTGAATTAAATTTGGCATAGTCAGTATTCATTGTTTTAATATCCAGTAAGTATTGAATTTTGTTTTATGTAGATATATGTGAATATCTGAGTCTCTATGCGTATATTGATGGATTTGATTGTAAAAAGTGATTTGAAATAACACAGTAAATTTCAGAATTGATCTCCTTATAGTTCGCTGTTACTTCAAAAATTTGTGCCTTATTGTGTGTTGTGGTATGTATGGACTTCTGTTTTATGTTGATATATGTGAATGTTTGAGTGATTTCTGGAATATTAATCTCTCTATGTGTATATTGATGGATTTGATTGTAAAAAATGTGCCTTGGGATAGTTCTACACGGTAAACTTCATAATTGATCTTCTTGTACTTTTTTGCTTTTTGCTGTTTTACAGAAACTAGTGTCTTATTGTGTGTTGCCGTGTGTATGTAATACTGTTTTATGTAGATATATGTGAATATTTGAGTGATTTCTAGGAGTATACATTGATCTCTCTATGTGTATATTGATGGATTTGATCATTAAAGTTCCTATGGATAGTTCTGTAGAGTAAATTTCATAATTGATCTCCGTATAGTTCTCTGTTGTTACTATAAAAACTTGTGCCTTATTATGTGTTGCAGAATGTATCGAATGTTGATTCAGTTGTGCGTGATTTAGAAAGTCACGGTGTATACTTTTTAATATGTGCATTAACTTAGAAAACTTGCTGAAATGATCTTAACACCGAAGTTTGCCTTAATCCTAAGCTAGTTGCAATCAACAAATAAATCTCACTTGGACGCAATTGTCATGATATACATCATTGGATGAAAAGGTGGTAAATTAGATGTTTTGGACAAATATATTCCAAGGGATCCGCTGTGTACTCCTGCTTCCCGCCTTTTTGCCTATTTATGAAGCAATCAATGGGTCTTCTTGAAATATTGTCTTAAAGAATAAATTGATTGAATGTTTAATTTGGATTTCAGAGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAGGTATGCTTGCAATATTCCATGTATCTGGTTTTGTTTTCTATTTAAATATAAAGTGTTTATATCTGCCTTTGTTTCATATGGCGGTGTATCAAATTTAGCAGGTATTTTCTGTATGGTGCTTGTCTGAACATTCATATTCATGGCAAAGTTCCAAGCAAACTGGTCTAGCCCCAATTTAGGAGCTCAAGGGCTCAGAGTTGATTCCAGTGGGGGTGAACCAGCCCAAACCTGACCTTAAACCCTTGGGAGGGGTATACTCTCGGACCCCTTTTTTCCACTAAGAAATTTGATTGAAGAATCTAGAGACGATTTATATAAAAGAAAATTGTGTTCCCTTAGAATAACTCACTTACACACAAGTAGATGAACATAAATTAAAAAAATAATTGAAGAAAGAGATTGGACAATAGTAAGAAATTAGAAATATGGACAATATTTAATGCATTGAAATTGAATTAATATCCTTAACTTGCCTAGATACCAAACAAGCACATCTATTCTAAAAGGGTTGGTGGGTTCGTTTTGCTTCTGAAATTGACATAGTTCTCATCTGTATAAATAAGCAATAACTCTTCTAAATTGTAACCCTGAATGTTTCGGTATGGTGTCAATGAATTCAATTAGGGAATTTGGGGTTAATGTGTAGGCATCTAACAAGCCGTTGCCACTCCCCCCCCCCCCCTCCCCCCTCTTTGAACACCGTTCAGTCCATCGGCCTTGTGCTATGTGGCTGGCCTAGCAATTCCCGCGGGTCAGACACCCCTTCATGGGGTTTATGTTGATCGTGGATTGGACAAGCCTACTCAGGGGTCATTTGGTAGAATGTATTAGGAAAAATAATGCATTTATTGGCCTTGTGTATTACTATTACGTTGCTCGTTACTCTTTTCCAATCTATGCATTAGTTATACACTATATTGTGTATTAAGGAATGCATTACTAATACTATGGATTTGTAGGTATTAATAATGCAATGGTTTACACTCTACCAAACCACCCCTTAAAGTTAAATTTCTTTTTATTTTCTTATGACAAGGGAACCCGCAGCCGCTACCCTTTGGGTGCGCATAGGGTAAAACTCCTGCTCCTATGCAATAGCTCGCAAACTACATAGGAGAGGTAACCCGCACCCGGATGTCTAGTGTTTTCTGAAAAACAGTTTCTAATTCAGCTTTTGTCCGAAACTATTATCACGCTGTGCAAATAGCATATAATTATGTGATGGCTTCTTTGGCTTTTAGGTTATTTTTCATGTAATATTTTGGGAATCTGATGGATTTGATGGATTATGGCCTAAGGAAGTTGAATTACCAGATATCGTTGTTGTTGGTTATGTTATTTTAGGAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAGGTATTATCCCATTTCTTCTTTTAATAATATATCTCAGGCCTCTCCTTTTCAATTCATAGGGCAAAACATTATGAATTCTTTATTTTAAGTTGTCCCTTTTATGATGTTCGAATTAATGCCTCATATGAATGATTTCCTTTTTGACATCTAAGTTCATATGAAGCAGAAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAGGTTGGCATCTTCTTCAGTTGAATTATTCTTGTATACATTTATGATAGAGAGCAAAACAAATAAGTGAACAACCTACATAGAGAAAATGTTGTTAAGGGCTGGTTATTATTCTTGTATTTCGAATTACTTGTGGTTGACTGTTATTATTGGAACTAGGCTGAATTGATTTTTATAATGGATGGTAGTATGAGTTGTCTTTGTCAAGGATAATCATGACAGGGTCTTTCTATCAAAAGACATTAGGTTGAAGGCTGCTATAAATGAAATATTTCAAATTTCAAAGCTTGTTTAGTCAAATTATGACATACCTTAGGCTTTAAATATGTGATCTTAATGACATTTAACATTTATTTTAGCGCGATGGTTATGTTGCCAGTTTCTTTGGACTATTTTTCTCTTGAGCCGAAGATCTATTGGAATAATCAATCTCTCTACCTCTGAGGTAGGGTAAGGTTTGTGTACACTCTACCCGCCCTAGATCCACTTTGTGGGACTATTCTGGGTATGTTGTTGTTGTTGGTTATGTTGCCAGTCTCTGTTAAGTATTCAGTTCTGTGTTTTTGTTAATGGAGGTGTCTAATTTGTATGCAATCCATTTCGTCTTTGTGTTACATGATATAATGGCATTTATCTTATAGAAATACCAGTTAGTTATTGTGTTATATCGGTAAGTAACTTGATAAAGAAGTTTGTTATATCGGTCGATGGAAATGACATCAAAACGATTTATTGTTAGTTCGTTTTAGTGGTGCAGGGCATGTGAAGTAATTGGGTCATTTTTCTTACGTAATCATGGCGCATAATCTGCAACTTGTATAATTTTACTTTGATGTGGTGGATTCCAGAATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAGGTGCGGCGTCATTGATTCTTCCCCTGGTTCCCTTTTTTCTTTTTCTGTGAATTAAGATGTTTGTCAAGTGATTTCCTTATAAGCACAAGTTATTTGCCACAACTCATGAATATTCTTGTTTCTGGTGAAGCTATAGCATTTCCATATTTTAGTACATGGTAAGCAACTGTTTCATTGCTACAGCATGATAGAAGATAAGTACTAAGAATCAGTTTGATCTAAGGCGTAAGAAAAATAATCTCTGCAAAATTGTGATTATCAATTGTTGGTTCCTATGTAATCATACATGTATTATTTTATGTGGAATATCAATACGCAGATTAGTACTCAACCTTTTAAGTGTTGTGTTATGTTCTTAGTTGAGTTTGTATGAATTCCAAGTTATTTTAGGTCTTCAAAGATTTTTTCCTTTGATATGTGAATCGGTGAATGTATTCCATCTATTTTTTAGCACTCTTAATTATCCCAACAATGTGACAACAGATTAGTTAATTTGGAAGTCTTCGTGAGATTAATTGGTGCAATCTCTGATGACCTCTCTCATGTCCTTATGCAATGACACTTGCACCCTCTAGGGGATGGGATCATTTCTAATCATGTCTAATTTTGTATGATGATATATCTATCCTAACATCTGTATTTTAACGGCACTTGTTTCCCAACATTCACTTTTATATAAATAAACCTTGTTGGCCTTAGAATTGGTCTGTAGAACTTTTTTGTCCCTTTGATAGGTTTCATATCATATTTTGTTCCACTTTTGTAGCATTCCTCAGCTACAACTAGCCTATTTTACTTCAATATATTCATCAATCAAGTCGTTCTTCTAAAATATATACATTTAATTAATTTTTAATTCGATGATAAAACCAATATATACATTCCAATTAAATACTAGTGCCCCCCCCCCCCCCCCTTAAAAACTATTACATCCTTAAGAGAAAGACTGCAAAGAAATTATCTAATTCCCCTATGCCAGATGGATACATCTCCTGGTGTCGGATAATTTTTCTTTATAAATGGATATAAGGAGTACATATCACAATAGTACTTAAGCAGATGTTTCTTTTACTTTTAGTAAATATATTTAAAGTAAGCTAGTTAACCTACAAGTTTGAGTTTTCCTATTGGCTGTAGGAAACTATCATGGTAAGTGAGACAACTTTAACCAATATGAATATAAGTCAATAATATGGATGCTGTTGGCAACACTTCCTGCTCATTTCTTTGCTTGTGGAGAGAACATATAGCAGAATCTGAACTTTTTACTTTCCTAGAGTTGGTCTTTCATTTATGATTTCTCATAGATCTTCAGGATCCAACTTAAGCAAAGGCACTTACGGAAGAAAAGAGGAAATAGAGAAATAATCAATGACTTTGTTATCTTGTATCCATTGTCAATTTTCCCTTGTCAGCATATTTGTCCAGAAGGGGTGACTAAATCAATGTTTGTTACTCTTATAAAAAAAGGTCAATGTTTGTTGCTCTTCAGCTATTAATTTCTGTGTTTCTTGATCCTCCCCCCTTCTTTGGTGCAGTTTTGTTTCTACTCTAATTTTTAACTTTTCCCTGATGTTTTTAAGTGCAGTGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTTCCTT</genome_strand>
        <mrna_strand>AATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAG......................................................................................................................................................................AAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E368988" ref_strand="+" ref_description="SGN-E368988 [TUS-25-P7]">
      <seq>aatacttttcccactccactctctacttctccatattttcttctccgatcgacaaatcgattctccggttctctctataatctatctgcttctgtacgatcaatcggaaagttctagaagaagatgtcgtcgaattcaaagttaatgccgaatctggatgagcgaagtacgaagatgctaaacctcactgtgctacagagaatcgatccgcgtattgaggagatcctcatcacagctgctcatgttacgttgtacgagttcaacgtcgacctcaatcaatggagccgcaaggaggttgaaggttctttctttgtagttaagaggagtgctcagccaaggttccagttcattgttatgaaccgcaggagtgcagaaaatatggtggaagatctcttgggagactttgagtttgaggttcaggttccatacttgttgtatcgcaatgcagcccaagaagtcaatggtatttggttttacaatgcacatgaaattgaggaggttgcagatctcttcggcagaattttaggtgaatactcaaaggttcccctgaagccacagctaagaaaaagtgagtttgcagatcatgaggtggtcccaatgagtacagcaatagaagggacatctggaccagcatttaccacctctacggatgggtttggtgctgatgattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="30931" stop="37210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31231" g_stop="31512" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31513" i_stop="32576" i_length="1064">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32577" g_stop="32617" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="323" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32618" i_stop="33961" i_length="1344">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33962" g_stop="34011" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="373" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34012" i_stop="34177" i_length="166">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.674" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34178" g_stop="34322" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="518" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34323" i_stop="35167" i_length="845">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35168" g_stop="35218" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="569" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35219" i_stop="36806" i_length="1588">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36807" g_stop="36910" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="673" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E368988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31231" e_stop="31512"/>
          <exon e_start="32577" e_stop="32617"/>
          <exon e_start="33962" e_stop="34011"/>
          <exon e_start="34178" e_stop="34322"/>
          <exon e_start="35168" e_stop="35218"/>
          <exon e_start="36807" e_stop="36910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGGGTTCGTAAACTTGATTTTCGTTTAAATTTCTGAAAAGGAGATTTATATTTCATCGAGTTTAGGAAATAGAGGCTAATTTGGTGTGATAATTGTTGAATTAAATTTGGCATAGTCAGTATTCATTGTTTTAATATCCAGTAAGTATTGAATTTTGTTTTATGTAGATATATGTGAATATCTGAGTCTCTATGCGTATATTGATGGATTTGATTGTAAAAAGTGATTTGAAATAACACAGTAAATTTCAGAATTGATCTCCTTATAGTTCGCTGTTACTTCAAAAATTTGTGCCTTATTGTGTGTTGTGGTATGTATGGACTTCTGTTTTATGTTGATATATGTGAATGTTTGAGTGATTTCTGGAATATTAATCTCTCTATGTGTATATTGATGGATTTGATTGTAAAAAATGTGCCTTGGGATAGTTCTACACGGTAAACTTCATAATTGATCTTCTTGTACTTTTTTGCTTTTTGCTGTTTTACAGAAACTAGTGTCTTATTGTGTGTTGCCGTGTGTATGTAATACTGTTTTATGTAGATATATGTGAATATTTGAGTGATTTCTAGGAGTATACATTGATCTCTCTATGTGTATATTGATGGATTTGATCATTAAAGTTCCTATGGATAGTTCTGTAGAGTAAATTTCATAATTGATCTCCGTATAGTTCTCTGTTGTTACTATAAAAACTTGTGCCTTATTATGTGTTGCAGAATGTATCGAATGTTGATTCAGTTGTGCGTGATTTAGAAAGTCACGGTGTATACTTTTTAATATGTGCATTAACTTAGAAAACTTGCTGAAATGATCTTAACACCGAAGTTTGCCTTAATCCTAAGCTAGTTGCAATCAACAAATAAATCTCACTTGGACGCAATTGTCATGATATACATCATTGGATGAAAAGGTGGTAAATTAGATGTTTTGGACAAATATATTCCAAGGGATCCGCTGTGTACTCCTGCTTCCCGCCTTTTTGCCTATTTATGAAGCAATCAATGGGTCTTCTTGAAATATTGTCTTAAAGAATAAATTGATTGAATGTTTAATTTGGATTTCAGAGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAGGTATGCTTGCAATATTCCATGTATCTGGTTTTGTTTTCTATTTAAATATAAAGTGTTTATATCTGCCTTTGTTTCATATGGCGGTGTATCAAATTTAGCAGGTATTTTCTGTATGGTGCTTGTCTGAACATTCATATTCATGGCAAAGTTCCAAGCAAACTGGTCTAGCCCCAATTTAGGAGCTCAAGGGCTCAGAGTTGATTCCAGTGGGGGTGAACCAGCCCAAACCTGACCTTAAACCCTTGGGAGGGGTATACTCTCGGACCCCTTTTTTCCACTAAGAAATTTGATTGAAGAATCTAGAGACGATTTATATAAAAGAAAATTGTGTTCCCTTAGAATAACTCACTTACACACAAGTAGATGAACATAAATTAAAAAAATAATTGAAGAAAGAGATTGGACAATAGTAAGAAATTAGAAATATGGACAATATTTAATGCATTGAAATTGAATTAATATCCTTAACTTGCCTAGATACCAAACAAGCACATCTATTCTAAAAGGGTTGGTGGGTTCGTTTTGCTTCTGAAATTGACATAGTTCTCATCTGTATAAATAAGCAATAACTCTTCTAAATTGTAACCCTGAATGTTTCGGTATGGTGTCAATGAATTCAATTAGGGAATTTGGGGTTAATGTGTAGGCATCTAACAAGCCGTTGCCACTCCCCCCCCCCCCCTCCCCCCTCTTTGAACACCGTTCAGTCCATCGGCCTTGTGCTATGTGGCTGGCCTAGCAATTCCCGCGGGTCAGACACCCCTTCATGGGGTTTATGTTGATCGTGGATTGGACAAGCCTACTCAGGGGTCATTTGGTAGAATGTATTAGGAAAAATAATGCATTTATTGGCCTTGTGTATTACTATTACGTTGCTCGTTACTCTTTTCCAATCTATGCATTAGTTATACACTATATTGTGTATTAAGGAATGCATTACTAATACTATGGATTTGTAGGTATTAATAATGCAATGGTTTACACTCTACCAAACCACCCCTTAAAGTTAAATTTCTTTTTATTTTCTTATGACAAGGGAACCCGCAGCCGCTACCCTTTGGGTGCGCATAGGGTAAAACTCCTGCTCCTATGCAATAGCTCGCAAACTACATAGGAGAGGTAACCCGCACCCGGATGTCTAGTGTTTTCTGAAAAACAGTTTCTAATTCAGCTTTTGTCCGAAACTATTATCACGCTGTGCAAATAGCATATAATTATGTGATGGCTTCTTTGGCTTTTAGGTTATTTTTCATGTAATATTTTGGGAATCTGATGGATTTGATGGATTATGGCCTAAGGAAGTTGAATTACCAGATATCGTTGTTGTTGGTTATGTTATTTTAGGAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAGGTATTATCCCATTTCTTCTTTTAATAATATATCTCAGGCCTCTCCTTTTCAATTCATAGGGCAAAACATTATGAATTCTTTATTTTAAGTTGTCCCTTTTATGATGTTCGAATTAATGCCTCATATGAATGATTTCCTTTTTGACATCTAAGTTCATATGAAGCAGAAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAGGTTGGCATCTTCTTCAGTTGAATTATTCTTGTATACATTTATGATAGAGAGCAAAACAAATAAGTGAACAACCTACATAGAGAAAATGTTGTTAAGGGCTGGTTATTATTCTTGTATTTCGAATTACTTGTGGTTGACTGTTATTATTGGAACTAGGCTGAATTGATTTTTATAATGGATGGTAGTATGAGTTGTCTTTGTCAAGGATAATCATGACAGGGTCTTTCTATCAAAAGACATTAGGTTGAAGGCTGCTATAAATGAAATATTTCAAATTTCAAAGCTTGTTTAGTCAAATTATGACATACCTTAGGCTTTAAATATGTGATCTTAATGACATTTAACATTTATTTTAGCGCGATGGTTATGTTGCCAGTTTCTTTGGACTATTTTTCTCTTGAGCCGAAGATCTATTGGAATAATCAATCTCTCTACCTCTGAGGTAGGGTAAGGTTTGTGTACACTCTACCCGCCCTAGATCCACTTTGTGGGACTATTCTGGGTATGTTGTTGTTGTTGGTTATGTTGCCAGTCTCTGTTAAGTATTCAGTTCTGTGTTTTTGTTAATGGAGGTGTCTAATTTGTATGCAATCCATTTCGTCTTTGTGTTACATGATATAATGGCATTTATCTTATAGAAATACCAGTTAGTTATTGTGTTATATCGGTAAGTAACTTGATAAAGAAGTTTGTTATATCGGTCGATGGAAATGACATCAAAACGATTTATTGTTAGTTCGTTTTAGTGGTGCAGGGCATGTGAAGTAATTGGGTCATTTTTCTTACGTAATCATGGCGCATAATCTGCAACTTGTATAATTTTACTTTGATGTGGTGGATTCCAGAATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAGGTGCGGCGTCATTGATTCTTCCCCTGGTTCCCTTTTTTCTTTTTCTGTGAATTAAGATGTTTGTCAAGTGATTTCCTTATAAGCACAAGTTATTTGCCACAACTCATGAATATTCTTGTTTCTGGTGAAGCTATAGCATTTCCATATTTTAGTACATGGTAAGCAACTGTTTCATTGCTACAGCATGATAGAAGATAAGTACTAAGAATCAGTTTGATCTAAGGCGTAAGAAAAATAATCTCTGCAAAATTGTGATTATCAATTGTTGGTTCCTATGTAATCATACATGTATTATTTTATGTGGAATATCAATACGCAGATTAGTACTCAACCTTTTAAGTGTTGTGTTATGTTCTTAGTTGAGTTTGTATGAATTCCAAGTTATTTTAGGTCTTCAAAGATTTTTTCCTTTGATATGTGAATCGGTGAATGTATTCCATCTATTTTTTAGCACTCTTAATTATCCCAACAATGTGACAACAGATTAGTTAATTTGGAAGTCTTCGTGAGATTAATTGGTGCAATCTCTGATGACCTCTCTCATGTCCTTATGCAATGACACTTGCACCCTCTAGGGGATGGGATCATTTCTAATCATGTCTAATTTTGTATGATGATATATCTATCCTAACATCTGTATTTTAACGGCACTTGTTTCCCAACATTCACTTTTATATAAATAAACCTTGTTGGCCTTAGAATTGGTCTGTAGAACTTTTTTGTCCCTTTGATAGGTTTCATATCATATTTTGTTCCACTTTTGTAGCATTCCTCAGCTACAACTAGCCTATTTTACTTCAATATATTCATCAATCAAGTCGTTCTTCTAAAATATATACATTTAATTAATTTTTAATTCGATGATAAAACCAATATATACATTCCAATTAAATACTAGTGCCCCCCCCCCCCCCCCTTAAAAACTATTACATCCTTAAGAGAAAGACTGCAAAGAAATTATCTAATTCCCCTATGCCAGATGGATACATCTCCTGGTGTCGGATAATTTTTCTTTATAAATGGATATAAGGAGTACATATCACAATAGTACTTAAGCAGATGTTTCTTTTACTTTTAGTAAATATATTTAAAGTAAGCTAGTTAACCTACAAGTTTGAGTTTTCCTATTGGCTGTAGGAAACTATCATGGTAAGTGAGACAACTTTAACCAATATGAATATAAGTCAATAATATGGATGCTGTTGGCAACACTTCCTGCTCATTTCTTTGCTTGTGGAGAGAACATATAGCAGAATCTGAACTTTTTACTTTCCTAGAGTTGGTCTTTCATTTATGATTTCTCATAGATCTTCAGGATCCAACTTAAGCAAAGGCACTTACGGAAGAAAAGAGGAAATAGAGAAATAATCAATGACTTTGTTATCTTGTATCCATTGTCAATTTTCCCTTGTCAGCATATTTGTCCAGAAGGGGTGACTAAATCAATGTTTGTTACTCTTATAAAAAAAGGTCAATGTTTGTTGCTCTTCAGCTATTAATTTCTGTGTTTCTTGATCCTCCCCCCTTCTTTGGTGCAGTTTTGTTTCTACTCTAATTTTTAACTTTTCCCTGATGTTTTTAAGTGCAGTGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTT</genome_strand>
        <mrna_strand>AATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAG......................................................................................................................................................................AAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E255378" ref_strand="+" ref_description="SGN-E255378 [cLEG-30-H23]">
      <seq>aatactttttttactccactttctacttctccatatctgctggtgcgatcgggaaatctattctccggttctctctataatctatctgcttgtgtacgatcaatcggaaagtgctagaagaagatgtcgactaattcaaagctaatgccgaatctggatgagcgaagtacgaagatgctaaacctcactgagctacagagaatcgatccgcgtattgaggagatcctcatcacagctgctcatgttacgttgtacgagttcaacgtcgacctcaatcaatggagccgcacggaggttgaaggttctttctttgtcgttaagaggagtgctcagccaaggttccagatcattgttatgaaccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="30943" stop="34301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31231" g_stop="31512" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31513" i_stop="32576" i_length="1064">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32577" g_stop="32617" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="323" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32618" i_stop="33961" i_length="1344">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33962" g_stop="34001" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="363" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E255378" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31231" e_stop="31512"/>
          <exon e_start="32577" e_stop="32617"/>
          <exon e_start="33962" e_stop="34001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGGGTTCGTAAACTTGATTTTCGTTTAAATTTCTGAAAAGGAGATTTATATTTCATCGAGTTTAGGAAATAGAGGCTAATTTGGTGTGATAATTGTTGAATTAAATTTGGCATAGTCAGTATTCATTGTTTTAATATCCAGTAAGTATTGAATTTTGTTTTATGTAGATATATGTGAATATCTGAGTCTCTATGCGTATATTGATGGATTTGATTGTAAAAAGTGATTTGAAATAACACAGTAAATTTCAGAATTGATCTCCTTATAGTTCGCTGTTACTTCAAAAATTTGTGCCTTATTGTGTGTTGTGGTATGTATGGACTTCTGTTTTATGTTGATATATGTGAATGTTTGAGTGATTTCTGGAATATTAATCTCTCTATGTGTATATTGATGGATTTGATTGTAAAAAATGTGCCTTGGGATAGTTCTACACGGTAAACTTCATAATTGATCTTCTTGTACTTTTTTGCTTTTTGCTGTTTTACAGAAACTAGTGTCTTATTGTGTGTTGCCGTGTGTATGTAATACTGTTTTATGTAGATATATGTGAATATTTGAGTGATTTCTAGGAGTATACATTGATCTCTCTATGTGTATATTGATGGATTTGATCATTAAAGTTCCTATGGATAGTTCTGTAGAGTAAATTTCATAATTGATCTCCGTATAGTTCTCTGTTGTTACTATAAAAACTTGTGCCTTATTATGTGTTGCAGAATGTATCGAATGTTGATTCAGTTGTGCGTGATTTAGAAAGTCACGGTGTATACTTTTTAATATGTGCATTAACTTAGAAAACTTGCTGAAATGATCTTAACACCGAAGTTTGCCTTAATCCTAAGCTAGTTGCAATCAACAAATAAATCTCACTTGGACGCAATTGTCATGATATACATCATTGGATGAAAAGGTGGTAAATTAGATGTTTTGGACAAATATATTCCAAGGGATCCGCTGTGTACTCCTGCTTCCCGCCTTTTTGCCTATTTATGAAGCAATCAATGGGTCTTCTTGAAATATTGTCTTAAAGAATAAATTGATTGAATGTTTAATTTGGATTTCAGAGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAGGTATGCTTGCAATATTCCATGTATCTGGTTTTGTTTTCTATTTAAATATAAAGTGTTTATATCTGCCTTTGTTTCATATGGCGGTGTATCAAATTTAGCAGGTATTTTCTGTATGGTGCTTGTCTGAACATTCATATTCATGGCAAAGTTCCAAGCAAACTGGTCTAGCCCCAATTTAGGAGCTCAAGGGCTCAGAGTTGATTCCAGTGGGGGTGAACCAGCCCAAACCTGACCTTAAACCCTTGGGAGGGGTATACTCTCGGACCCCTTTTTTCCACTAAGAAATTTGATTGAAGAATCTAGAGACGATTTATATAAAAGAAAATTGTGTTCCCTTAGAATAACTCACTTACACACAAGTAGATGAACATAAATTAAAAAAATAATTGAAGAAAGAGATTGGACAATAGTAAGAAATTAGAAATATGGACAATATTTAATGCATTGAAATTGAATTAATATCCTTAACTTGCCTAGATACCAAACAAGCACATCTATTCTAAAAGGGTTGGTGGGTTCGTTTTGCTTCTGAAATTGACATAGTTCTCATCTGTATAAATAAGCAATAACTCTTCTAAATTGTAACCCTGAATGTTTCGGTATGGTGTCAATGAATTCAATTAGGGAATTTGGGGTTAATGTGTAGGCATCTAACAAGCCGTTGCCACTCCCCCCCCCCCCCTCCCCCCTCTTTGAACACCGTTCAGTCCATCGGCCTTGTGCTATGTGGCTGGCCTAGCAATTCCCGCGGGTCAGACACCCCTTCATGGGGTTTATGTTGATCGTGGATTGGACAAGCCTACTCAGGGGTCATTTGGTAGAATGTATTAGGAAAAATAATGCATTTATTGGCCTTGTGTATTACTATTACGTTGCTCGTTACTCTTTTCCAATCTATGCATTAGTTATACACTATATTGTGTATTAAGGAATGCATTACTAATACTATGGATTTGTAGGTATTAATAATGCAATGGTTTACACTCTACCAAACCACCCCTTAAAGTTAAATTTCTTTTTATTTTCTTATGACAAGGGAACCCGCAGCCGCTACCCTTTGGGTGCGCATAGGGTAAAACTCCTGCTCCTATGCAATAGCTCGCAAACTACATAGGAGAGGTAACCCGCACCCGGATGTCTAGTGTTTTCTGAAAAACAGTTTCTAATTCAGCTTTTGTCCGAAACTATTATCACGCTGTGCAAATAGCATATAATTATGTGATGGCTTCTTTGGCTTTTAGGTTATTTTTCATGTAATATTTTGGGAATCTGATGGATTTGATGGATTATGGCCTAAGGAAGTTGAATTACCAGATATCGTTGTTGTTGGTTATGTTATTTTAGGAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGC</genome_strand>
        <mrna_strand>AATACTTTTTTTACTCCACTTTCTACTTCTCCATATCTGCTGGTGCGATCGGGAAATCTATTCTCCGGTTCTCTCTATAATCTATCTGCTTGTGTACGATCAATCGGAAAGTGCTAGAAGAAGATGTCGACTAATTCAAAGCTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGAGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCACGGAGGTTGAAGGTTCTTTCTTTGTCGTTAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCTCAGCCAAGGTTCCAGATCATTGTTATGAACCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E368987" ref_strand="-" ref_description="SGN-E368987 [TUS-25-P7]">
      <seq>attttgcaagtctcattacctgttcagtcagctccatcacctcctcgacagtcacgtcgcgattctgctaacctgatcaatagtactaattaccctgcaaatcttgtgaagccttctttctttacaccccctgtgtcacctgtattggtgacaacttctgtctcctcagctacatcaactcccgtcctttatcctcatgtgaatccacaacgcccacatggtacacttttagttcaacccttccgaacacctacttcgcctccatttttcacttttactcagattcctccacaaagtgtgacactaagcagagagaaggttcaagacgtgcttttaatgcttgttcaggacaatcagtttatcgacttggtctaccaaaagttgcttaaagcacattcatgattccgtgagaagtgtggtgatgttgtagatcttgataccatgtaaaagtagtttgtacatatttgttttttttgctggggattggacttaccttcttttcacctcacgaagagatcgactacacctatgacttgatgtaatatatgaaacttggacaatcctgatgaaagtttatgaacaattgaatatcgacaatggcaaaccttttaaacatttctgtaaattctatgcacagttttggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaaactagttctcagaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="37655" stop="39890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37955" g_stop="38302" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38303" i_stop="39290" i_length="988">
            <donor d_prob="0.883" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39291" g_stop="39584" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="642" r_length="294" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="649" polyA_stop="676"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E368987" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368987" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37955" e_stop="38302"/>
          <exon e_start="39291" e_stop="39584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGCAAGTCTCATTACCTGTTCAGTCAGCTCCATCACCTCCTCGACAGTCACGCCGCGATTCTGCTAACCTGATCAATAGTACTAATTACCCTGCAAATCTTGTGAAGCCTTCTTTCTTTACACCCCCTGTGTCACCTGTATTGGTGACAACTTCTGTCTCCTCAGCTACATCAACTCCCGTCCTTTATCCTCATGTGAATCCACAACGCCCACATGGTACACTTCTAGTTCAACCCTTCCGAACACCTACTTCGCCTCCATTTCTCACTTCTACTCAGATTCCTCCACAAAGTGTGACACTAAGCAGAGAGAAGGTTCAAGACGTGCTTCTAATGCTTGTTCAGGTATATCCAGCCATCCAGGATTTAATTTATGTACTCTGCCTGCTATTCGGATGACTACAACTGTGTTCATTAATTATAGTCATTGCTGGGTGCATCTTATCTGTACTTGAACAGTAATTGAATTCCGTTCAACTGGATAAATCTCGGTCATTTTATCAATAAAATTTGTGGACATGACGTATTATCGAAACTGCTTATTTGAAAACACATTCAGATTTTGGAGGGGGGGTTCAGCGATTGTAACTTCAGTCTGACTTGTGTGCACAATCGAAGGATCCTTGTAAATAACTGAGTTTAAAATGCATATGCTGGCTCTGAGTTCTTTCTTCTTTTTCTGTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGAAAGGAGGGGGAGGGCGGGGTAAAGAATGCTAGATCTAAGTTCTTATTTACTTTATCAAGATCTCTCGGTTTTATTTATTTAAGTACTTAAAGTTGGTTAAATAATTAAAAGATATCTGTTATTGTAGAAGTTACATCCAAGGTGGCTTGTTTAAATTTTTTAACTTTTAACTGATGAATCATCAGTTAGTATCTTAAGATGCCCCGTCAAATTAATTCTTGGTTTTGACTTCATATTTCTTCTAATGTGCAATTTCCTTTTCAATGTTTAGAGAGCTATAGTTCCCATCTGCTGTCTAAAGTCTAAACAAGTGAAAAGTTTCTTTTTGGAAAGAGTCTCTTTAAGTTCTGGATCTCATTTCCAGTTGGATCTATTTTACACGTAATCTCTAGCTCGACCTGTAACTTGGCACATTGCCACCAGCCTATTCCTGAAAATACTGAAAAATGTTCGACCAACCATTGGTGAATGGTTGAGATGAAGAATGCCTTGGCATGATGATCATGATTAGATTTTAGTAATTGTATCATTGTAGTTTCATCAATAACATGCAGCTCACATACATGATAGTTTCTATTATTGAAGAAAAAATGGTTGTTTTCTTAATTTTTTTTGCAGGACAATCAGTTTATCGACTTGGTCTACCAAAAGTTGCTTAAAGCACATTCATGATTCCGTGAGAAGTGTGGTGATGTTGTAGATCTTGATACCATGTAAAAGTAGTTTGTACATATTTGTTTCTTCTGCTGGGGATTGGACTTACCTTCTTTTCACCTCACGAAGAGATCGACTACACCTATGACTTGATGTAATATATGAAACTTGGACAATCCTGATGAAAGTCTATGAACAATTGAATATCGACAATGGCAAACCTTTTAAACATTTCTGTAAATTCTATGCACAGTTCTG</genome_strand>
        <mrna_strand>ATTTTGCAAGTCTCATTACCTGTTCAGTCAGCTCCATCACCTCCTCGACAGTCACGTCGCGATTCTGCTAACCTGATCAATAGTACTAATTACCCTGCAAATCTTGTGAAGCCTTCTTTCTTTACACCCCCTGTGTCACCTGTATTGGTGACAACTTCTGTCTCCTCAGCTACATCAACTCCCGTCCTTTATCCTCATGTGAATCCACAACGCCCACATGGTACACTTTTAGTTCAACCCTTCCGAACACCTACTTCGCCTCCATTTTTCACTTTTACTCAGATTCCTCCACAAAGTGTGACACTAAGCAGAGAGAAGGTTCAAGACGTGCTTTTAATGCTTGTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCAGTTTATCGACTTGGTCTACCAAAAGTTGCTTAAAGCACATTCATGATTCCGTGAGAAGTGTGGTGATGTTGTAGATCTTGATACCATGTAAAAGTAGTTTGTACATATTTGTTTTTTTTGCTGGGGATTGGACTTACCTTCTTTTCACCTCACGAAGAGATCGACTACACCTATGACTTGATGTAATATATGAAACTTGGACAATCCTGATGAAAGTTTATGAACAATTGAATATCGACAATGGCAAACCTTTTAAACATTTCTGTAAATTCTATGCACAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-L63TpH/sgn_ests_tomato_potato" ref_id="SGN-E369682" ref_strand="-" ref_description="SGN-E369682 [TUS-25-P8]">
      <seq>cagtcagctccatcacctcctcgacagtcacgtcgcgattctgctaacctgatcaatagtactaattaccctgcaaatcttgtgaagccttctttctttacaccccctgtgtcacctgtattggtgacaacttctgtctcctcagctacatcaactcccgtcctttatcctcatgtgaatccacaacgcccacatggtacacttttagttcaacccttccgaacacctacttcgcctccatttctcacttctactcagattcctccacaaagtgtgacactaagcagagagaaggttcaagacgtgcttttaatgcttgttcaggacaatcagtttatcgacttggtctaccaaaagttgcttaaagcacattcatgattccgtgagaagtgtggtgatgttgtagatcttgataccatgtaaaagtagtttgtacatatttgttttttttgctggggattggacttaccttcttttcacctcacgaagagatcgactacacctatgacttgatgtaatatatgaaacttggacaatcctgatgaaagtctatgaacaattgaatatcgacaatggcaaaccttttaaacatttctgtaaattttatgcacagttctggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaaactagttctcagaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0191P09-tcED7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0191P09.1" temp_strand="+" temp_description="C09HBa0191P09.1  AC214093.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0191P09 upload_account_name:spain (1 - 40116)">
        <position start="37679" stop="39890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37979" g_stop="38302" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38303" i_stop="39290" i_length="988">
            <donor d_prob="0.883" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39291" g_stop="39584" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="618" r_length="294" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="652"/>
      <MATCH_line gen_id="C09HBa0191P09.1" gen_strand="+" ref_id="SGN-E369682" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0191P09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369682" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37979" e_stop="38302"/>
          <exon e_start="39291" e_stop="39584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCAGCTCCATCACCTCCTCGACAGTCACGCCGCGATTCTGCTAACCTGATCAATAGTACTAATTACCCTGCAAATCTTGTGAAGCCTTCTTTCTTTACACCCCCTGTGTCACCTGTATTGGTGACAACTTCTGTCTCCTCAGCTACATCAACTCCCGTCCTTTATCCTCATGTGAATCCACAACGCCCACATGGTACACTTCTAGTTCAACCCTTCCGAACACCTACTTCGCCTCCATTTCTCACTTCTACTCAGATTCCTCCACAAAGTGTGACACTAAGCAGAGAGAAGGTTCAAGACGTGCTTCTAATGCTTGTTCAGGTATATCCAGCCATCCAGGATTTAATTTATGTACTCTGCCTGCTATTCGGATGACTACAACTGTGTTCATTAATTATAGTCATTGCTGGGTGCATCTTATCTGTACTTGAACAGTAATTGAATTCCGTTCAACTGGATAAATCTCGGTCATTTTATCAATAAAATTTGTGGACATGACGTATTATCGAAACTGCTTATTTGAAAACACATTCAGATTTTGGAGGGGGGGTTCAGCGATTGTAACTTCAGTCTGACTTGTGTGCACAATCGAAGGATCCTTGTAAATAACTGAGTTTAAAATGCATATGCTGGCTCTGAGTTCTTTCTTCTTTTTCTGTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGAAAGGAGGGGGAGGGCGGGGTAAAGAATGCTAGATCTAAGTTCTTATTTACTTTATCAAGATCTCTCGGTTTTATTTATTTAAGTACTTAAAGTTGGTTAAATAATTAAAAGATATCTGTTATTGTAGAAGTTACATCCAAGGTGGCTTGTTTAAATTTTTTAACTTTTAACTGATGAATCATCAGTTAGTATCTTAAGATGCCCCGTCAAATTAATTCTTGGTTTTGACTTCATATTTCTTCTAATGTGCAATTTCCTTTTCAATGTTTAGAGAGCTATAGTTCCCATCTGCTGTCTAAAGTCTAAACAAGTGAAAAGTTTCTTTTTGGAAAGAGTCTCTTTAAGTTCTGGATCTCATTTCCAGTTGGATCTATTTTACACGTAATCTCTAGCTCGACCTGTAACTTGGCACATTGCCACCAGCCTATTCCTGAAAATACTGAAAAATGTTCGACCAACCATTGGTGAATGGTTGAGATGAAGAATGCCTTGGCATGATGATCATGATTAGATTTTAGTAATTGTATCATTGTAGTTTCATCAATAACATGCAGCTCACATACATGATAGTTTCTATTATTGAAGAAAAAATGGTTGTTTTCTTAATTTTTTTTGCAGGACAATCAGTTTATCGACTTGGTCTACCAAAAGTTGCTTAAAGCACATTCATGATTCCGTGAGAAGTGTGGTGATGTTGTAGATCTTGATACCATGTAAAAGTAGTTTGTACATATTTGTTTCTTCTGCTGGGGATTGGACTTACCTTCTTTTCACCTCACGAAGAGATCGACTACACCTATGACTTGATGTAATATATGAAACTTGGACAATCCTGATGAAAGTCTATGAACAATTGAATATCGACAATGGCAAACCTTTTAAACATTTCTGTAAATTCTATGCACAGTTCTG</genome_strand>
        <mrna_strand>CAGTCAGCTCCATCACCTCCTCGACAGTCACGTCGCGATTCTGCTAACCTGATCAATAGTACTAATTACCCTGCAAATCTTGTGAAGCCTTCTTTCTTTACACCCCCTGTGTCACCTGTATTGGTGACAACTTCTGTCTCCTCAGCTACATCAACTCCCGTCCTTTATCCTCATGTGAATCCACAACGCCCACATGGTACACTTTTAGTTCAACCCTTCCGAACACCTACTTCGCCTCCATTTCTCACTTCTACTCAGATTCCTCCACAAAGTGTGACACTAAGCAGAGAGAAGGTTCAAGACGTGCTTTTAATGCTTGTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCAGTTTATCGACTTGGTCTACCAAAAGTTGCTTAAAGCACATTCATGATTCCGTGAGAAGTGTGGTGATGTTGTAGATCTTGATACCATGTAAAAGTAGTTTGTACATATTTGTTTTTTTTGCTGGGGATTGGACTTACCTTCTTTTCACCTCACGAAGAGATCGACTACACCTATGACTTGATGTAATATATGAAACTTGGACAATCCTGATGAAAGTCTATGAACAATTGAATATCGACAATGGCAAACCTTTTAAACATTTCTGTAAATTTTATGCACAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>134</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="522" PGL_stop="4841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="522" e_stop="589"/>
            <exon e_start="1131" e_stop="1279"/>
            <exon e_start="1367" e_stop="1423"/>
            <exon e_start="1661" e_stop="1699"/>
            <exon e_start="1790" e_stop="2206"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.816" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="522" e_stop="589" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.910">
            <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1131" e_stop="1279" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1367" e_stop="1423" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.719">
            <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1661" e_stop="1699" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.816" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="1790" e_stop="2206" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595978" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390765" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393367" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578249" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346638" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310212" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1200" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227199" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1258" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1375" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238880" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1395" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1400" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588292" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1419" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1420" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239378" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1870" stop="2120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG : AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG : TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG : GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTATCTGTTATT</gDNA_template>
            <first_frame> M  N  V  E  K  L  Q  K  M  A  G  S  V  R  T  G  G  K  G  T  M  R  R :   K  K  K  A  V  H  K  T  T  T  T  D  D  K  R  L  Q  S  T  L  K  R  I  G  V  N  A  I  P  A  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  S  N  P  K   : V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  V  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  G  H  T  S  *  R  F  C  *  T  Y  F  P  V  F  *  Y  *  I  L  P  *  L  L  S  V  L  F  H  S  I  V  T  H  L  K  R  I  L  K  C  F  *  *  *  S  T  L  P  F  K  A  *  S  S  I  S  A  L  L  P  S  S  V  I  I  F  V  I  L  Y  *  L  V  F  I  V  R  I  F  H  S  I  C  Y  </first_frame>
            <second_frame>  *  M  *  K  S  C  K  R  W  P  V  R  L  E  P  V  E  R  V  P  *  E   : E  R  R  K  P  Y  T  K  Q  L  Q  L  M  T  K  D  Y  R  A  P  *  K  E  *  V  S  M  P  F  L  P  L  K  K  S  T  F  S  K  R  M  L  L  S  N  S  V  T  P  K  :  F  K  H  Q  L  L  Q  T  H  G  *  S  V  V  P  P  R  Q  R  :  N  C  R  I  F  F  L  K  L  F  T  S  W  :  V  L  I  I  W  R  T  *  R  S  W  L  S  S  S  R  S  R  H  L  V  L  Q  M  W  L  Q  V  L  L  Q  H  R  K  M  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  R  L  R  R  A  I  L  P  E  G  F  V  E  L  T  F  Q  C  S  D  I  R  F  C  L  S  F  *  V  F  Y  F  I  L  L  *  H  I  S  K  E  F  L  N  A  F  N  S  N  L  L  C  P  S  K  H  N  L  L  F  Q  H  C  C  L  L  L  S  *  Y  L  L  F  Y  T  S  *  S  L  *  *  E  Y  F  I  V  S  V  I </second_frame>
            <third_frame>   E  C  R  K  V  A  K  D  G  R  F  G  *  N  R  W  K  G  Y  H  E  K  :  K  E  E  S  R  T  Q  N  N  Y  N  *  *  Q  K  T  T  E  H  L  E  K  N  R  C  Q  C  H  S  C  H  *  R  S  Q  H  F  Q  R  G  C  C  Y  P  I  Q  *  P  Q  S :   S  S  I  N  C  C  K  H  M  G  S  Q  W  Y  P  P  D  K  E :   I  A  G  Y  S  S  S  N  Y  S  P  A  G :   S  *  *  F  G  E  L  E  E  V  G  *  A  V  P  E  A  G  T  W  C  C  R  C  G  C  R  C  C  C  S  T  G  R  *  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  G  *  G  G  P  Y  F  L  K  V  L  L  N  L  L  S  S  V  L  I  L  D  F  A  L  A  F  E  C  S  I  S  F  Y  C  D  T  S  Q  K  N  S  *  M  L  L  I  V  I  Y  F  A  L  Q  S  I  I  F  Y  F  S  I  A  A  F  F  C  H  N  I  C  Y  S  I  L  A  S  L  Y  S  K  N  I  S  *  Y  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="522" stop="589"/>
                    <exon start="1131" stop="1279"/>
                    <exon start="1367" stop="1423"/>
                    <exon start="1661" stop="1699"/>
                    <exon start="1790" stop="1965"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNVEKLQKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKEDVVIQFSNPKVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADVAAGAVAAQEDDDDVPELVAGETFEAAAEEGHTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1128" e_stop="1279"/>
            <exon e_start="1367" e_stop="1423"/>
            <exon e_start="1661" e_stop="1699"/>
            <exon e_start="1790" e_stop="2206"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.816" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1128" e_stop="1279" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1367" e_stop="1423" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.719">
            <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1661" e_stop="1699" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.816" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="1790" e_stop="2206" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1128" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1128" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1128" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1128" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375795" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1132" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1132" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1134" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1135" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392379" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1165" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1165" stop="1279"/>
              <exon start="1367" stop="1408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1171" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1178" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1191" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310212" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1200" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227199" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1258" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1375" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238880" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1395" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1400" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588292" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1419" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1420" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="2100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239378" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1870" stop="2120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG : TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG : GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAGGTTTTGTTGAACTTACTTTCCAGTGTTCTGATATTAGATTTTGCCTTAGCTTTTGAGTGTTCTATTTCATTCTATTGTGACACATCTCAAAAGAATTCTTAAATGCTTTTAATAGTAATCTACTTTGCCCTTCAAAGCATAATCTTCTATTTCAGCATTGCTGCCTTCTTCTGTCATAATATTTGTTATTCTATACTAGCTAGTCTTTATAGTAAGAATATTTCATAGTATCTGTTATT</gDNA_template>
            <first_frame> Q  K  E  E  S  R  T  Q  N  N  Y  N  *  *  Q  K  T  T  E  H  L  E  K  N  R  C  Q  C  H  S  C  H  *  R  S  Q  H  F  Q  R  G  C  C  Y  P  I  Q  *  P  Q  S :   S  S  I  N  C  C  K  H  M  G  S  Q  W  Y  P  P  D  K  E :   I  A  G  Y  S  S  S  N  Y  S  P  A  G :   S  *  *  F  G  E  L  E  E  V  G  *  A  V  P  E  A  G  T  W  C  C  R  C  G  C  R  C  C  C  S  T  G  R  *  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  G  *  G  G  P  Y  F  L  K  V  L  L  N  L  L  S  S  V  L  I  L  D  F  A  L  A  F  E  C  S  I  S  F  Y  C  D  T  S  Q  K  N  S  *  M  L  L  I  V  I  Y  F  A  L  Q  S  I  I  F  Y  F  S  I  A  A  F  F  C  H  N  I  C  Y  S  I  L  A  S  L  Y  S  K  N  I  S  *  Y  L  L   </first_frame>
            <second_frame>  R  K  K  K  A  V  H  K  T  T  T  T  D  D  K  R  L  Q  S  T  L  K  R  I  G  V  N  A  I  P  A  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  S  N  P  K   : V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  V  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  G  H  T  S  *  R  F  C  *  T  Y  F  P  V  F  *  Y  *  I  L  P  *  L  L  S  V  L  F  H  S  I  V  T  H  L  K  R  I  L  K  C  F  *  *  *  S  T  L  P  F  K  A  *  S  S  I  S  A  L  L  P  S  S  V  I  I  F  V  I  L  Y  *  L  V  F  I  V  R  I  F  H  S  I  C  Y  </second_frame>
            <third_frame>   E  R  R  K  P  Y  T  K  Q  L  Q  L  M  T  K  D  Y  R  A  P  *  K  E  *  V  S  M  P  F  L  P  L  K  K  S  T  F  S  K  R  M  L  L  S  N  S  V  T  P  K  :  F  K  H  Q  L  L  Q  T  H  G  *  S  V  V  P  P  R  Q  R  :  N  C  R  I  F  F  L  K  L  F  T  S  W  :  V  L  I  I  W  R  T  *  R  S  W  L  S  S  S  R  S  R  H  L  V  L  Q  M  W  L  Q  V  L  L  Q  H  R  K  M  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  R  L  R  R  A  I  L  P  E  G  F  V  E  L  T  F  Q  C  S  D  I  R  F  C  L  S  F  *  V  F  Y  F  I  L  L  *  H  I  S  K  E  F  L  N  A  F  N  S  N  L  L  C  P  S  K  H  N  L  L  F  Q  H  C  C  L  L  L  S  *  Y  L  L  F  Y  T  S  *  S  L  *  *  E  Y  F  I  V  S  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1129" stop="1279"/>
                    <exon start="1367" stop="1423"/>
                    <exon start="1661" stop="1699"/>
                    <exon start="1790" stop="1965"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKEDVVIQFSNPKVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADVAAGAVAAQEDDDDVPELVAGETFEAAAEEGHTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="522" e_stop="589"/>
            <exon e_start="1131" e_stop="1279"/>
            <exon e_start="1367" e_stop="1423"/>
            <exon e_start="1661" e_stop="1699"/>
            <exon e_start="1790" e_stop="1967"/>
            <exon e_start="2332" e_stop="2373"/>
            <exon e_start="2470" e_stop="2599"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.816" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="522" e_stop="589" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.910">
            <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1131" e_stop="1279" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1367" e_stop="1423" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.719">
            <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1661" e_stop="1699" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.816" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1790" e_stop="1967" e_length="178"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.950">
            <gDNA_intron_boundary i_start="1968" i_stop="2331" i_length="364"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2332" e_stop="2373" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="2374" i_stop="2469" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2470" e_stop="2599" e_length="130"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1967"/>
              <exon start="2332" stop="2373"/>
              <exon start="2470" stop="2599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1967"/>
              <exon start="2332" stop="2373"/>
              <exon start="2470" stop="2546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1967"/>
              <exon start="2332" stop="2373"/>
              <exon start="2470" stop="2506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="558" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1165" stop="1279"/>
              <exon start="1367" stop="1408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG : AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG : TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG : GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG : GTTGTGTAATTGAGGTTGAGCAGTCATTTTGGTTGCCATGAG : GGTGCTCTCAACCAGTGGACTAGTTCTTTTGGAATTCCACCCAGTGTTTGGTATTTGCTTTGGTCTTGATTGATTTCTATTTGCTCCAAGAAAAACTCTAAAGACTTTTGATAAATAATGATTGGGTTAC</gDNA_template>
            <first_frame> M  N  V  E  K  L  Q  K  M  A  G  S  V  R  T  G  G  K  G  T  M  R  R :   K  K  K  A  V  H  K  T  T  T  T  D  D  K  R  L  Q  S  T  L  K  R  I  G  V  N  A  I  P  A  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  S  N  P  K   : V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  V  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  G  H  T  S  *  R :   L  C  N  *  G  *  A  V  I  L  V  A  M  R :   V  L  S  T  S  G  L  V  L  L  E  F  H  P  V  F  G  I  C  F  G  L  D  *  F  L  F  A  P  R  K  T  L  K  T  F  D  K  *  *  L  G  Y </first_frame>
            <second_frame>  *  M  *  K  S  C  K  R  W  P  V  R  L  E  P  V  E  R  V  P  *  E   : E  R  R  K  P  Y  T  K  Q  L  Q  L  M  T  K  D  Y  R  A  P  *  K  E  *  V  S  M  P  F  L  P  L  K  K  S  T  F  S  K  R  M  L  L  S  N  S  V  T  P  K  :  F  K  H  Q  L  L  Q  T  H  G  *  S  V  V  P  P  R  Q  R  :  N  C  R  I  F  F  L  K  L  F  T  S  W  :  V  L  I  I  W  R  T  *  R  S  W  L  S  S  S  R  S  R  H  L  V  L  Q  M  W  L  Q  V  L  L  Q  H  R  K  M  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  R  L  R  R  A  I  L  P  E   : G  C  V  I  E  V  E  Q  S  F  W  L  P  *   : G  C  S  Q  P  V  D  *  F  F  W  N  S  T  Q  C  L  V  F  A  L  V  L  I  D  F  Y  L  L  Q  E  K  L  *  R  L  L  I  N  N  D  W  V   </second_frame>
            <third_frame>   E  C  R  K  V  A  K  D  G  R  F  G  *  N  R  W  K  G  Y  H  E  K  :  K  E  E  S  R  T  Q  N  N  Y  N  *  *  Q  K  T  T  E  H  L  E  K  N  R  C  Q  C  H  S  C  H  *  R  S  Q  H  F  Q  R  G  C  C  Y  P  I  Q  *  P  Q  S :   S  S  I  N  C  C  K  H  M  G  S  Q  W  Y  P  P  D  K  E :   I  A  G  Y  S  S  S  N  Y  S  P  A  G :   S  *  *  F  G  E  L  E  E  V  G  *  A  V  P  E  A  G  T  W  C  C  R  C  G  C  R  C  C  C  S  T  G  R  *  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  G  *  G  G  P  Y  F  L  K  :  V  V  *  L  R  L  S  S  H  F  G  C  H  E  :  G  A  L  N  Q  W  T  S  S  F  G  I  P  P  S  V  W  Y  L  L  W  S  *  L  I  S  I  C  S  K  K  N  S  K  D  F  *  *  I  M  I  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="522" stop="589"/>
                    <exon start="1131" stop="1279"/>
                    <exon start="1367" stop="1423"/>
                    <exon start="1661" stop="1699"/>
                    <exon start="1790" stop="1965"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNVEKLQKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKEDVVIQFSNPKVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADVAAGAVAAQEDDDDVPELVAGETFEAAAEEGHTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="522" e_stop="589"/>
            <exon e_start="1131" e_stop="1279"/>
            <exon e_start="1367" e_stop="1423"/>
            <exon e_start="1661" e_stop="1699"/>
            <exon e_start="1790" e_stop="1967"/>
            <exon e_start="4459" e_stop="4841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.925" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.719" e_score="1.000"/>
          <exon-intron don_prob="0.816" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.744" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="522" e_stop="589" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.925" acc_prob="0.910">
            <gDNA_intron_boundary i_start="590" i_stop="1130" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1131" e_stop="1279" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="1280" i_stop="1366" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1367" e_stop="1423" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.719">
            <gDNA_intron_boundary i_start="1424" i_stop="1660" i_length="237"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1661" e_stop="1699" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.816" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1700" i_stop="1789" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1790" e_stop="1967" e_length="178"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.744">
            <gDNA_intron_boundary i_start="1968" i_stop="4458" i_length="2491"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="4459" e_stop="4841" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="522" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="524" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1967"/>
              <exon start="4459" stop="4841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="525" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1967"/>
              <exon start="4459" stop="4514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="558" stop="589"/>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1131" stop="1279"/>
              <exon start="1367" stop="1423"/>
              <exon start="1661" stop="1699"/>
              <exon start="1790" stop="1951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1165" stop="1279"/>
              <exon start="1367" stop="1408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAATGTAGAAAAGTTGCAAAAGATGGCCGGTTCGGTTAGAACCGGTGGAAAGGGTACCATGAGAAG : AAAGAAGAAAGCCGTACACAAAACAACTACAACTGATGACAAAAGACTACAGAGCACCTTGAAAAGAATAGGTGTCAATGCCATTCCTGCCATTGAAGAAGTCAACATTTTCAAAGAGGATGTTGTTATCCAATTCAGTAACCCCAAAG : TTCAAGCATCAATTGCTGCAAACACATGGGTAGTCAGTGGTACCCCCCAGACAAAGA : AATTGCAGGATATTCTTCCTCAAATTATTCACCAGCTGG : GTCCTGATAATTTGGAGAACTTGAAGAAGTTGGCTGAGCAGTTCCAGAAGCAGGCACCTGGTGCTGCAGATGTGGCTGCAGGTGCTGTTGCAGCACAGGAAGATGATGATGATGTACCAGAACTTGTGGCTGGTGAAACTTTTGAAGCTGCGGCTGAGGAGGGCCATACTTCCTGAAG : TCACTCAATGCGTGGCTTTTGAATTCACCAAATTTTTACAAGCTGTGTGGGAGAAAAAGACTCAACCTTGATGGATTCAAAATGGCCATTATTTCACCAATGCTGGAACGAAGTCAAGTATTTAGAGGTTTCAATCCCTTTTTGGTTATATAAATAGGTCAAGTGGGAAACAACAATAAGATATTATTCAGGTGCTTTTGACCAGACTAATAAGGTCGTTGTGGCAAAGTACTACTGTATCAGATGTAATGGATTAGCATCTCAAAACACTTCTATGGAAAGGAGACAAATAATAGATGCACATTCATTATATTATTAAGGGAAAAGGGTCAGATATACCCTCAATTTTATCAGTTAGAGCTGATATATCCCTTATTATGAAA</gDNA_template>
            <first_frame> M  N  V  E  K  L  Q  K  M  A  G  S  V  R  T  G  G  K  G  T  M  R  R :   K  K  K  A  V  H  K  T  T  T  T  D  D  K  R  L  Q  S  T  L  K  R  I  G  V  N  A  I  P  A  I  E  E  V  N  I  F  K  E  D  V  V  I  Q  F  S  N  P  K   : V  Q  A  S  I  A  A  N  T  W  V  V  S  G  T  P  Q  T  K   : K  L  Q  D  I  L  P  Q  I  I  H  Q  L   : G  P  D  N  L  E  N  L  K  K  L  A  E  Q  F  Q  K  Q  A  P  G  A  A  D  V  A  A  G  A  V  A  A  Q  E  D  D  D  D  V  P  E  L  V  A  G  E  T  F  E  A  A  A  E  E  G  H  T  S  *  S :   H  S  M  R  G  F  *  I  H  Q  I  F  T  S  C  V  G  E  K  D  S  T  L  M  D  S  K  W  P  L  F  H  Q  C  W  N  E  V  K  Y  L  E  V  S  I  P  F  W  L  Y  K  *  V  K  W  E  T  T  I  R  Y  Y  S  G  A  F  D  Q  T  N  K  V  V  V  A  K  Y  Y  C  I  R  C  N  G  L  A  S  Q  N  T  S  M  E  R  R  Q  I  I  D  A  H  S  L  Y  Y  *  G  K  R  V  R  Y  T  L  N  F  I  S  *  S  *  Y  I  P  Y  Y  E  </first_frame>
            <second_frame>  *  M  *  K  S  C  K  R  W  P  V  R  L  E  P  V  E  R  V  P  *  E   : E  R  R  K  P  Y  T  K  Q  L  Q  L  M  T  K  D  Y  R  A  P  *  K  E  *  V  S  M  P  F  L  P  L  K  K  S  T  F  S  K  R  M  L  L  S  N  S  V  T  P  K  :  F  K  H  Q  L  L  Q  T  H  G  *  S  V  V  P  P  R  Q  R  :  N  C  R  I  F  F  L  K  L  F  T  S  W  :  V  L  I  I  W  R  T  *  R  S  W  L  S  S  S  R  S  R  H  L  V  L  Q  M  W  L  Q  V  L  L  Q  H  R  K  M  M  M  M  Y  Q  N  L  W  L  V  K  L  L  K  L  R  L  R  R  A  I  L  P  E   : V  T  Q  C  V  A  F  E  F  T  K  F  L  Q  A  V  W  E  K  K  T  Q  P  *  W  I  Q  N  G  H  Y  F  T  N  A  G  T  K  S  S  I  *  R  F  Q  S  L  F  G  Y  I  N  R  S  S  G  K  Q  Q  *  D  I  I  Q  V  L  L  T  R  L  I  R  S  L  W  Q  S  T  T  V  S  D  V  M  D  *  H  L  K  T  L  L  W  K  G  D  K  *  *  M  H  I  H  Y  I  I  K  G  K  G  S  D  I  P  S  I  L  S  V  R  A  D  I  S  L  I  M  K </second_frame>
            <third_frame>   E  C  R  K  V  A  K  D  G  R  F  G  *  N  R  W  K  G  Y  H  E  K  :  K  E  E  S  R  T  Q  N  N  Y  N  *  *  Q  K  T  T  E  H  L  E  K  N  R  C  Q  C  H  S  C  H  *  R  S  Q  H  F  Q  R  G  C  C  Y  P  I  Q  *  P  Q  S :   S  S  I  N  C  C  K  H  M  G  S  Q  W  Y  P  P  D  K  E :   I  A  G  Y  S  S  S  N  Y  S  P  A  G :   S  *  *  F  G  E  L  E  E  V  G  *  A  V  P  E  A  G  T  W  C  C  R  C  G  C  R  C  C  C  S  T  G  R  *  *  *  C  T  R  T  C  G  W  *  N  F  *  S  C  G  *  G  G  P  Y  F  L  K  :  S  L  N  A  W  L  L  N  S  P  N  F  Y  K  L  C  G  R  K  R  L  N  L  D  G  F  K  M  A  I  I  S  P  M  L  E  R  S  Q  V  F  R  G  F  N  P  F  L  V  I  *  I  G  Q  V  G  N  N  N  K  I  L  F  R  C  F  *  P  D  *  *  G  R  C  G  K  V  L  L  Y  Q  M  *  W  I  S  I  S  K  H  F  Y  G  K  E  T  N  N  R  C  T  F  I  I  L  L  R  E  K  G  Q  I  Y  P  Q  F  Y  Q  L  E  L  I  Y  P  L  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="522" stop="589"/>
                    <exon start="1131" stop="1279"/>
                    <exon start="1367" stop="1423"/>
                    <exon start="1661" stop="1699"/>
                    <exon start="1790" stop="1965"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNVEKLQKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKEDVVIQFSNPKVQASIAANTWVVSGTPQTKKLQDILPQIIHQLGPDNLENLKKLAEQFQKQAPGAADVAAGAVAAQEDDDDVPELVAGETFEAAAEEGHTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="2992" e_stop="3684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="2992" e_stop="3684" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2992" stop="3684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393854" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3064" stop="3684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393539" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAAAAAAAGTATTTTGTACTAGTTACAACTCCACAGTAGAAAATAAGTTGTTGCAATGACCTACTTGCATCCAATAGGCTCATGTGGTACTTAGAGATCACATAACATTCAAAATTCTGAATACTGTTAGAACTCATGTAGCCACATTTTTAGTTAGTATCAATTAGCATAACTGAAACTGGTCTATTATTATACAGGGTTACAGTTCTGTACATTATATTTTGTTGCAAAGTCCACTGCTGCCATCTTCTGGCTTTCCAGCTAAAACTAGAAATTCATCCTTGTGATCGATTCTCACATGCTTCCACTGTTTGCTTCACTCTCAACTATCAGTACTACTGTGACTAGCAACGTTGTCATCATAGTGATCGCCAGATGGTCAATCTTGTTCAGGGCATAACGACTCCTTACCCCGATTAATAGATAATTCTTGGAGGGGTGGACTACTGATTTTATGGATAGTCAAAGTAGATTACTCAACCTCTGAGTTACTATATCATTTGTTGCTTCTACTGTTTCCTTCTTACACTTGCAAAATATGCAAAATCAGCCTTCATCATACGGTGGTACTGCTAATTATCAGCTCTCTAGGTATAAGTTTTCATAAGTAGAATGATCCTGCAGACATAGCTAAACAGAAGTTGTAAAGTTGTGCTCTGATACATAAGGATTGGAATAGAGGATTGACAAA</gDNA_template>
            <first_frame> *  K  K  S  I  L  Y  *  L  Q  L  H  S  R  K  *  V  V  A  M  T  Y  L  H  P  I  G  S  C  G  T  *  R  S  H  N  I  Q  N  S  E  Y  C  *  N  S  C  S  H  I  F  S  *  Y  Q  L  A  *  L  K  L  V  Y  Y  Y  T  G  L  Q  F  C  T  L  Y  F  V  A  K  S  T  A  A  I  F  W  L  S  S  *  N  *  K  F  I  L  V  I  D  S  H  M  L  P  L  F  A  S  L  S  T  I  S  T  T  V  T  S  N  V  V  I  I  V  I  A  R  W  S  I  L  F  R  A  *  R  L  L  T  P  I  N  R  *  F  L  E  G  W  T  T  D  F  M  D  S  Q  S  R  L  L  N  L  *  V  T  I  S  F  V  A  S  T  V  S  F  L  H  L  Q  N  M  Q  N  Q  P  S  S  Y  G  G  T  A  N  Y  Q  L  S  R  Y  K  F  S  *  V  E  *  S  C  R  H  S  *  T  E  V  V  K  L  C  S  D  T  *  G  L  E  *  R  I  D  K </first_frame>
            <second_frame>  E  K  K  V  F  C  T  S  Y  N  S  T  V  E  N  K  L  L  Q  *  P  T  C  I  Q  *  A  H  V  V  L  R  D  H  I  T  F  K  I  L  N  T  V  R  T  H  V  A  T  F  L  V  S  I  N  *  H  N  *  N  W  S  I  I  I  Q  G  Y  S  S  V  H  Y  I  L  L  Q  S  P  L  L  P  S  S  G  F  P  A  K  T  R  N  S  S  L  *  S  I  L  T  C  F  H  C  L  L  H  S  Q  L  S  V  L  L  *  L  A  T  L  S  S  *  *  S  P  D  G  Q  S  C  S  G  H  N  D  S  L  P  R  L  I  D  N  S  W  R  G  G  L  L  I  L  W  I  V  K  V  D  Y  S  T  S  E  L  L  Y  H  L  L  L  L  L  F  P  S  Y  T  C  K  I  C  K  I  S  L  H  H  T  V  V  L  L  I  I  S  S  L  G  I  S  F  H  K  *  N  D  P  A  D  I  A  K  Q  K  L  *  S  C  A  L  I  H  K  D  W  N  R  G  L  T   </second_frame>
            <third_frame>   K  K  K  Y  F  V  L  V  T  T  P  Q  *  K  I  S  C  C  N  D  L  L  A  S  N  R  L  M  W  Y  L  E  I  T  *  H  S  K  F  *  I  L  L  E  L  M  *  P  H  F  *  L  V  S  I  S  I  T  E  T  G  L  L  L  Y  R  V  T  V  L  Y  I  I  F  C  C  K  V  H  C  C  H  L  L  A  F  Q  L  K  L  E  I  H  P  C  D  R  F  S  H  A  S  T  V  C  F  T  L  N  Y  Q  Y  Y  C  D  *  Q  R  C  H  H  S  D  R  Q  M  V  N  L  V  Q  G  I  T  T  P  Y  P  D  *  *  I  I  L  G  G  V  D  Y  *  F  Y  G  *  S  K  *  I  T  Q  P  L  S  Y  Y  I  I  C  C  F  Y  C  F  L  L  T  L  A  K  Y  A  K  S  A  F  I  I  R  W  Y  C  *  L  S  A  L  *  V  *  V  F  I  S  R  M  I  L  Q  T  *  L  N  R  S  C  K  V  V  L  *  Y  I  R  I  G  I  E  D  *  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3362" stop="3604"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPDGQSCSGHNDSLPRLIDNSWRGGLLILWIVKVDYSTSELLYHLLLLLFPSYTCKICKISLHHTVVLLIISSLGISFHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3147" stop="3341"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSISITETGLLLYRVTVLYIIFCCKVHCCHLLAFQLKLEIHPCDRFSHASTVCFTLNYQYYCD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5092" PGL_stop="5529"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5092" e_stop="5529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="5092" e_stop="5529" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5092" stop="5529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACAAAACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAGCTAAGGAATGAAAGAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATATTTTTTTTAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAAGGCATATATAAACCACTTTTATAACGAGAGGTATATCAGCTCCAAATGACAAAATTGAGAGGTATATCAGACCCTTTTCC</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  K  H  T  K  K  *  F  N  F  L  F  F  K  L  R  N  E  R  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  I  F  F  K  K  N  *  K  *  *  I  *  I  *  N  *  F  F  K  I  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  R  H  I  *  T  T  F  I  T  R  G  I  S  A  P  N  D  K  I  E  R  Y  I  R  P  F  S </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  Q  N  T  Q  K  N  S  L  I  F  Y  S  L  S  *  G  M  K  E  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  *  I  F  F  L  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  K  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  D  K  G  I  Y  K  P  L  L  *  R  E  V  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  K  T  H  K  K  I  V  *  F  F  I  L  *  A  K  E  *  K  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  Y  F  F  *  K  K  L  E  V  I  N  I  N  L  K  L  I  F  *  N  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  I  K  A  Y  I  N  H  F  Y  N  E  R  Y  I  S  S  K  *  Q  N  *  E  V  Y  Q  T  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0191P09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="17186" PGL_stop="18380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17186" e_stop="17868"/>
            <exon e_start="18243" e_stop="18380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.890" acc_prob="0.955" e_score="0.999"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="17186" e_stop="17868" e_length="683"/>
          </exon>
          <intron i_serial="1" don_prob="0.890" acc_prob="0.955">
            <gDNA_intron_boundary i_start="17869" i_stop="18242" i_length="374"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="18243" e_stop="18380" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17186" stop="17868"/>
              <exon start="18243" stop="18380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17186" stop="17857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17186" stop="17757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGAAATCATCCTAAAGTTCACATTTGGAACGGTCAAGGTACAGCTGATGCAATGTTTGTATTCCTGTCCCTCGCAGAAGAGAAATGTCTCTTCAATGAGAAAATAAACAGCAAAAAGAAACAAGTAACAGAAGTTTGAGCTTTTTGATGAGCTAAACAAAAGGGTGTTCTGATGTCAAATTTAATTGTTACTCAGCAGATCTTGTATAGAGATTCAACAAAGAAATGGGTAGTATAGTTTGCTATTAAGGAAAGGATAATCAGAGAGATACTTTAATCTTTTTCCCTCGAAGAGGAGATATTGCTGATACTTCAATTTTCGCCTAATTCTCATAATTATTTGTATTTCCTTCTGATGCCACTGACGTAATGTATACGAGCCTTTTACATTAATACCTTTCAGGTCCAAATCCACATATGGGACATTTGGCTTTTGCAGATGCTTTTGTTATTACTGCTGACTCAGTTAGTATGTTAAGCGAGGCTTGCAGTACGGGGTAAGTTGGCCTTTATGCTGACTCTTTTCAATTCGATGTCCCTTTTCTGTTATCCTTTTCATTAGCATTTCATCAGGAAACCTGTTTATGTAATTGGTGCTGAGCGATGTACGTGGAAATTCAGAGACTTCCATCAATCCTTGAAAAATCGAGGAGTGGTTCGTCCATTCCTTGGAAAAGAAGAT : ATATCTGAAAGTTGGAGCTATAGTCCCCTGAATGATACTAAGGAGGCTGCTGCGCATGTGATTACCGCACTAGCCGAACGAGGATGGCGATTGCCATCATAATTTCTACTCTACTAAAGTAGTAGTAGTAAATTGATC</gDNA_template>
            <first_frame> L  E  I  I  L  K  F  T  F  G  T  V  K  V  Q  L  M  Q  C  L  Y  S  C  P  S  Q  K  R  N  V  S  S  M  R  K  *  T  A  K  R  N  K  *  Q  K  F  E  L  F  D  E  L  N  K  R  V  F  *  C  Q  I  *  L  L  L  S  R  S  C  I  E  I  Q  Q  R  N  G  *  Y  S  L  L  L  R  K  G  *  S  E  R  Y  F  N  L  F  P  S  K  R  R  Y  C  *  Y  F  N  F  R  L  I  L  I  I  I  C  I  S  F  *  C  H  *  R  N  V  Y  E  P  F  T  L  I  P  F  R  S  K  S  T  Y  G  T  F  G  F  C  R  C  F  C  Y  Y  C  *  L  S  *  Y  V  K  R  G  L  Q  Y  G  V  S  W  P  L  C  *  L  F  S  I  R  C  P  F  S  V  I  L  F  I  S  I  S  S  G  N  L  F  M  *  L  V  L  S  D  V  R  G  N  S  E  T  S  I  N  P  *  K  I  E  E  W  F  V  H  S  L  E  K  K  I :   Y  L  K  V  G  A  I  V  P  *  M  I  L  R  R  L  L  R  M  *  L  P  H  *  P  N  E  D  G  D  C  H  H  N  F  Y  S  T  K  V  V  V  V  N  *   </first_frame>
            <second_frame>  W  K  S  S  *  S  S  H  L  E  R  S  R  Y  S  *  C  N  V  C  I  P  V  P  R  R  R  E  M  S  L  Q  *  E  N  K  Q  Q  K  E  T  S  N  R  S  L  S  F  L  M  S  *  T  K  G  C  S  D  V  K  F  N  C  Y  S  A  D  L  V  *  R  F  N  K  E  M  G  S  I  V  C  Y  *  G  K  D  N  Q  R  D  T  L  I  F  F  P  R  R  G  D  I  A  D  T  S  I  F  A  *  F  S  *  L  F  V  F  P  S  D  A  T  D  V  M  Y  T  S  L  L  H  *  Y  L  S  G  P  N  P  H  M  G  H  L  A  F  A  D  A  F  V  I  T  A  D  S  V  S  M  L  S  E  A  C  S  T  G  *  V  G  L  Y  A  D  S  F  Q  F  D  V  P  F  L  L  S  F  S  L  A  F  H  Q  E  T  C  L  C  N  W  C  *  A  M  Y  V  E  I  Q  R  L  P  S  I  L  E  K  S  R  S  G  S  S  I  P  W  K  R  R   : Y  I  *  K  L  E  L  *  S  P  E  *  Y  *  G  G  C  C  A  C  D  Y  R  T  S  R  T  R  M  A  I  A  I  I  I  S  T  L  L  K  *  *  *  *  I  D  </second_frame>
            <third_frame>   G  N  H  P  K  V  H  I  W  N  G  Q  G  T  A  D  A  M  F  V  F  L  S  L  A  E  E  K  C  L  F  N  E  K  I  N  S  K  K  K  Q  V  T  E  V  *  A  F  *  *  A  K  Q  K  G  V  L  M  S  N  L  I  V  T  Q  Q  I  L  Y  R  D  S  T  K  K  W  V  V  *  F  A  I  K  E  R  I  I  R  E  I  L  *  S  F  S  L  E  E  E  I  L  L  I  L  Q  F  S  P  N  S  H  N  Y  L  Y  F  L  L  M  P  L  T  *  C  I  R  A  F  Y  I  N  T  F  Q  V  Q  I  H  I  W  D  I  W  L  L  Q  M  L  L  L  L  L  L  T  Q  L  V  C  *  A  R  L  A  V  R  G  K  L  A  F  M  L  T  L  F  N  S  M  S  L  F  C  Y  P  F  H  *  H  F  I  R  K  P  V  Y  V  I  G  A  E  R  C  T  W  K  F  R  D  F  H  Q  S  L  K  N  R  G  V  V  R  P  F  L  G  K  E  D  :  I  S  E  S  W  S  Y  S  P  L  N  D  T  K  E  A  A  A  H  V  I  T  A  L  A  E  R  G  W  R  L  P  S  *  F  L  L  Y  *  S  S  S  S  K  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17749" stop="17868"/>
                    <exon start="18243" stop="18344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFIRKPVYVIGAERCTWKFRDFHQSLKNRGVVRPFLGKEDISESWSYSPLNDTKEAAAHVITALAERGWRLPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="25148" PGL_stop="24697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25148" e_stop="24697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25148" e_stop="24697" e_length="452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25148" stop="24697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276230" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAATAAAACATTGTTTGTGAGCTTGGTAGGATCGTACTTGAAAACATGTGTTGCACCGGGGCTAGGGAACAAGATATATTTTTCAATGTTTCACAATGAAAATGGTGTTTTCTATTGTTTAGTCAATCGCAAATATTACTCTTCTGATTATTTGGGCATCAAAACTTATTCAAGTCCAAATATTTTCAACTTCATTCGACCAATATCATGCATTTTGGATCGAATCAGAGGATGAGTGATCGTATAGTTCCATTTTTGTTCTTATCGGAGACATTCCCGGAGCCACGGGGATTAATTAGGTATGTTGTTGTTGGCACTGGTGCTAAAAATTACTTTTTATGACATATTACCGTGTAATAGTGCCAATATGTGGAGAAATCCAAAAGATAAAGTGTCATTAGTATATTTTGTGTATCAAATTCTTTTAATTAATAAAGTAGTTTTTATTTA</gDNA_template>
            <first_frame> N  N  K  T  L  F  V  S  L  V  G  S  Y  L  K  T  C  V  A  P  G  L  G  N  K  I  Y  F  S  M  F  H  N  E  N  G  V  F  Y  C  L  V  N  R  K  Y  Y  S  S  D  Y  L  G  I  K  T  Y  S  S  P  N  I  F  N  F  I  R  P  I  S  C  I  L  D  R  I  R  G  *  V  I  V  *  F  H  F  C  S  Y  R  R  H  S  R  S  H  G  D  *  L  G  M  L  L  L  A  L  V  L  K  I  T  F  Y  D  I  L  P  C  N  S  A  N  M  W  R  N  P  K  D  K  V  S  L  V  Y  F  V  Y  Q  I  L  L  I  N  K  V  V  F  I   </first_frame>
            <second_frame>  I  I  K  H  C  L  *  A  W  *  D  R  T  *  K  H  V  L  H  R  G  *  G  T  R  Y  I  F  Q  C  F  T  M  K  M  V  F  S  I  V  *  S  I  A  N  I  T  L  L  I  I  W  A  S  K  L  I  Q  V  Q  I  F  S  T  S  F  D  Q  Y  H  A  F  W  I  E  S  E  D  E  *  S  Y  S  S  I  F  V  L  I  G  D  I  P  G  A  T  G  I  N  *  V  C  C  C  W  H  W  C  *  K  L  L  F  M  T  Y  Y  R  V  I  V  P  I  C  G  E  I  Q  K  I  K  C  H  *  Y  I  L  C  I  K  F  F  *  L  I  K  *  F  L  F  </second_frame>
            <third_frame>   *  *  N  I  V  C  E  L  G  R  I  V  L  E  N  M  C  C  T  G  A  R  E  Q  D  I  F  F  N  V  S  Q  *  K  W  C  F  L  L  F  S  Q  S  Q  I  L  L  F  *  L  F  G  H  Q  N  L  F  K  S  K  Y  F  Q  L  H  S  T  N  I  M  H  F  G  S  N  Q  R  M  S  D  R  I  V  P  F  L  F  L  S  E  T  F  P  E  P  R  G  L  I  R  Y  V  V  V  G  T  G  A  K  N  Y  F  L  *  H  I  T  V  *  *  C  Q  Y  V  E  K  S  K  R  *  S  V  I  S  I  F  C  V  S  N  S  F  N  *  *  S  S  F  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25148" stop="24912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNKTLFVSLVGSYLKTCVAPGLGNKIYFSMFHNENGVFYCLVNRKYYSSDYLGIKTYSSPNIFNFIRPISCILDRIRG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24999" stop="24805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFGHQNLFKSKYFQLHSTNIMHFGSNQRMSDRIVPFLFLSETFPEPRGLIRYVVVGTGAKNYFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="26021" PGL_stop="25160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26021" e_stop="25160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="26021" e_stop="25160" e_length="862"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26021" stop="25160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTTACAATGGAGGCTGCATTGTGGTCAGATGGTATACCATCGGACATACTCGGATTAATATCATCACGTCTTATTGCTGCGGAATATTTTATTTTTCGTGCTGTTTGTAAAAAATGGAGACACACACCCGTTACCCCTCCACATTGTCCTGCTCAATCAGAAAAATCGCCTCGTTTGTTCACATTGCGTGGAGATACTGGAATAGTTGATTTCTTTCATCCCGTGTATAATTTTATGACAACTACGTCTATTCCAATTCCGAAATTAATGAATTCTCGAATTCGAAGTTCAAAAGGTAATTGGTTACTGATGAGTCATGGTGATTGCGATATGTTTTTTTTCAATTTTATTAGCAATGAGATAATTGAACTTCCTAATCTACAAGGGGAGAGTCGATATATCACTTGTTGGATATTTTCATGTCCTCCAAACTCGTCGTCATCTGCTTGCTTTGTTGTTGGTTTGGACTACAGTGGTAATCCTCCAGACGTTTGCATCATCAAAATTGGAGAGACTAATTGGACGTTTCATAACTTAAGTGATCTAGCAGATACATATAAACATTTTGCATTAACGGGATGCAGTAGTCCAATATTTTTTAGAAATAATATTGTTTATGTAGTGGGAGATAAAGGAAATCTGGGTATACTTACCATCAATGAAAACTCAACTCCTAGTTGGGAATTTTATGGTAAACCATTTCGAGGTAGAAGAGTAAAGTCAATCAACTATGTTTTCACGGCAGAAGATGTCGAAAACAAAGGAATATTAGTTGTATTTCTATCTCACCACGAAGGGAAAGTAGAGGTTTGGAGGTACAAAATGAATGGAGAGGTGTTGGAGAGGGAAGAAATAA</gDNA_template>
            <first_frame> F  F  F  T  M  E  A  A  L  W  S  D  G  I  P  S  D  I  L  G  L  I  S  S  R  L  I  A  A  E  Y  F  I  F  R  A  V  C  K  K  W  R  H  T  P  V  T  P  P  H  C  P  A  Q  S  E  K  S  P  R  L  F  T  L  R  G  D  T  G  I  V  D  F  F  H  P  V  Y  N  F  M  T  T  T  S  I  P  I  P  K  L  M  N  S  R  I  R  S  S  K  G  N  W  L  L  M  S  H  G  D  C  D  M  F  F  F  N  F  I  S  N  E  I  I  E  L  P  N  L  Q  G  E  S  R  Y  I  T  C  W  I  F  S  C  P  P  N  S  S  S  S  A  C  F  V  V  G  L  D  Y  S  G  N  P  P  D  V  C  I  I  K  I  G  E  T  N  W  T  F  H  N  L  S  D  L  A  D  T  Y  K  H  F  A  L  T  G  C  S  S  P  I  F  F  R  N  N  I  V  Y  V  V  G  D  K  G  N  L  G  I  L  T  I  N  E  N  S  T  P  S  W  E  F  Y  G  K  P  F  R  G  R  R  V  K  S  I  N  Y  V  F  T  A  E  D  V  E  N  K  G  I  L  V  V  F  L  S  H  H  E  G  K  V  E  V  W  R  Y  K  M  N  G  E  V  L  E  R  E  E  I  </first_frame>
            <second_frame>  F  F  L  Q  W  R  L  H  C  G  Q  M  V  Y  H  R  T  Y  S  D  *  Y  H  H  V  L  L  L  R  N  I  L  F  F  V  L  F  V  K  N  G  D  T  H  P  L  P  L  H  I  V  L  L  N  Q  K  N  R  L  V  C  S  H  C  V  E  I  L  E  *  L  I  S  F  I  P  C  I  I  L  *  Q  L  R  L  F  Q  F  R  N  *  *  I  L  E  F  E  V  Q  K  V  I  G  Y  *  *  V  M  V  I  A  I  C  F  F  S  I  L  L  A  M  R  *  L  N  F  L  I  Y  K  G  R  V  D  I  S  L  V  G  Y  F  H  V  L  Q  T  R  R  H  L  L  A  L  L  L  V  W  T  T  V  V  I  L  Q  T  F  A  S  S  K  L  E  R  L  I  G  R  F  I  T  *  V  I  *  Q  I  H  I  N  I  L  H  *  R  D  A  V  V  Q  Y  F  L  E  I  I  L  F  M  *  W  E  I  K  E  I  W  V  Y  L  P  S  M  K  T  Q  L  L  V  G  N  F  M  V  N  H  F  E  V  E  E  *  S  Q  S  T  M  F  S  R  Q  K  M  S  K  T  K  E  Y  *  L  Y  F  Y  L  T  T  K  G  K  *  R  F  G  G  T  K  *  M  E  R  C  W  R  G  K  K  * </second_frame>
            <third_frame>   F  F  Y  N  G  G  C  I  V  V  R  W  Y  T  I  G  H  T  R  I  N  I  I  T  S  Y  C  C  G  I  F  Y  F  S  C  C  L  *  K  M  E  T  H  T  R  Y  P  S  T  L  S  C  S  I  R  K  I  A  S  F  V  H  I  A  W  R  Y  W  N  S  *  F  L  S  S  R  V  *  F  Y  D  N  Y  V  Y  S  N  S  E  I  N  E  F  S  N  S  K  F  K  R  *  L  V  T  D  E  S  W  *  L  R  Y  V  F  F  Q  F  Y  *  Q  *  D  N  *  T  S  *  S  T  R  G  E  S  I  Y  H  L  L  D  I  F  M  S  S  K  L  V  V  I  C  L  L  C  C  W  F  G  L  Q  W  *  S  S  R  R  L  H  H  Q  N  W  R  D  *  L  D  V  S  *  L  K  *  S  S  R  Y  I  *  T  F  C  I  N  G  M  Q  *  S  N  I  F  *  K  *  Y  C  L  C  S  G  R  *  R  K  S  G  Y  T  Y  H  Q  *  K  L  N  S  *  L  G  I  L  W  *  T  I  S  R  *  K  S  K  V  N  Q  L  C  F  H  G  R  R  C  R  K  Q  R  N  I  S  C  I  S  I  S  P  R  R  E  S  R  G  L  E  V  Q  N  E  W  R  G  V  G  E  G  R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26021" stop="25161"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFTMEAALWSDGIPSDILGLISSRLIAAEYFIFRAVCKKWRHTPVTPPHCPAQSEKSPRLFTLRGDTGIVDFFHPVYNFMTTTSIPIPKLMNSRIRSSKGNWLLMSHGDCDMFFFNFISNEIIELPNLQGESRYITCWIFSCPPNSSSSACFVVGLDYSGNPPDVCIIKIGETNWTFHNLSDLADTYKHFALTGCSSPIFFRNNIVYVVGDKGNLGILTINENSTPSWEFYGKPFRGRRVKSINYVFTAEDVENKGILVVFLSHHEGKVEVWRYKMNGEVLEREEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="31229" PGL_stop="36925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31231" e_stop="31512"/>
            <exon e_start="32577" e_stop="32617"/>
            <exon e_start="33962" e_stop="34011"/>
            <exon e_start="34178" e_stop="34322"/>
            <exon e_start="35168" e_stop="35218"/>
            <exon e_start="36807" e_stop="36914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.674" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31231" e_stop="31512" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.991">
            <gDNA_intron_boundary i_start="31513" i_stop="32576" i_length="1064"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32577" e_stop="32617" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32618" i_stop="33961" i_length="1344"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33962" e_stop="34011" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.674">
            <gDNA_intron_boundary i_start="34012" i_stop="34177" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34178" e_stop="34322" e_length="145"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.979">
            <gDNA_intron_boundary i_start="34323" i_stop="35167" i_length="845"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35168" e_stop="35218" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.932" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35219" i_stop="36806" i_length="1588"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36807" e_stop="36914" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31231" stop="31512"/>
              <exon start="32577" stop="32617"/>
              <exon start="33962" stop="34011"/>
              <exon start="34178" stop="34322"/>
              <exon start="35168" stop="35218"/>
              <exon start="36807" stop="36914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31231" stop="31512"/>
              <exon start="32577" stop="32617"/>
              <exon start="33962" stop="34011"/>
              <exon start="34178" stop="34322"/>
              <exon start="35168" stop="35218"/>
              <exon start="36807" stop="36910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31231" stop="31512"/>
              <exon start="32577" stop="32617"/>
              <exon start="33962" stop="34001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGG : AGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAG : GAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAG : AAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAG : AATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAG : TGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTTCCTT</gDNA_template>
            <first_frame> N  T  F  P  T  P  L  S  T  S  P  Y  F  L  L  R  S  T  N  R  F  S  G  S  L  Y  N  L  S  A  S  V  R  S  I  G  K  F  *  K  K  M  S  S  N  S  K  L  M  P  N  L  D  E  R  S  T  K  M  L  N  L  T  V  L  Q  R  I  D  P  R  I  E  E  I  L  I  T  A  A  H  V  T  L  Y  E  F  N  V  D  L  N  Q  W  :  S  R  K  E  V  E  G  S  F  F  V  V  K  R :   S  A  Q  P  R  F  Q  F  I  V  M  N  R  R  S  A   : E  N  M  V  E  D  L  L  G  D  F  E  F  E  V  Q  V  P  Y  L  L  Y  R  N  A  A  Q  E  V  N  G  I  W  F  Y  N  A  H  E  I  E  E  V  A  D  L  F  G  R :   I  L  G  E  Y  S  K  V  P  L  K  P  Q  L  R  K  S :   E  F  A  D  H  E  V  V  P  M  S  T  A  I  E  G  T  S  G  P  A  F  T  T  S  T  D  G  F  G  A  D  D  S  S   </first_frame>
            <second_frame>  I  L  F  P  L  H  S  L  L  L  H  I  F  F  S  D  R  Q  I  D  S  P  V  L  S  I  I  Y  L  L  L  Y  D  Q  S  E  S  S  R  R  R  C  R  R  I  Q  S  *  C  R  I  W  M  S  E  V  R  R  C  *  T  S  L  C  Y  R  E  S  I  R  V  L  R  R  S  S  S  Q  L  L  M  L  R  C  T  S  S  T  S  T  S  I  N  G :   A  A  R  R  L  K  V  L  S  L  *  L  R   : G  V  L  S  Q  G  S  S  S  L  L  *  T  A  G  V  Q  :  K  I  W  W  K  I  S  W  E  T  L  S  L  R  F  R  F  H  T  C  C  I  A  M  Q  P  K  K  S  M  V  F  G  F  T  M  H  M  K  L  R  R  L  Q  I  S  S  A   : E  F  *  V  N  T  Q  R  F  P  *  S  H  S  *  E  K   : V  S  L  Q  I  M  R  W  S  Q  *  V  Q  Q  *  K  G  H  L  D  Q  H  L  P  P  L  R  M  G  L  V  L  M  I  L  P  </second_frame>
            <third_frame>   Y  F  S  H  S  T  L  Y  F  S  I  F  S  S  P  I  D  K  S  I  L  R  F  S  L  *  S  I  C  F  C  T  I  N  R  K  V  L  E  E  D  V  V  E  F  K  V  N  A  E  S  G  *  A  K  Y  E  D  A  K  P  H  C  A  T  E  N  R  S  A  Y  *  G  D  P  H  H  S  C  S  C  Y  V  V  R  V  Q  R  R  P  Q  S  M   : E  P  Q  G  G  *  R  F  F  L  C  S  *  E  :  E  C  S  A  K  V  P  V  H  C  Y  E  P  Q  E  C  R :   K  Y  G  G  R  S  L  G  R  L  *  V  *  G  S  G  S  I  L  V  V  S  Q  C  S  P  R  S  Q  W  Y  L  V  L  Q  C  T  *  N  *  G  G  C  R  S  L  R  Q  :  N  F  R  *  I  L  K  G  S  P  E  A  T  A  K  K  K  :  *  V  C  R  S  *  G  G  P  N  E  Y  S  N  R  R  D  I  W  T  S  I  Y  H  L  Y  G  W  V  W  C  *  *  F  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31348" stop="31512"/>
                    <exon start="32577" stop="32617"/>
                    <exon start="33962" stop="34011"/>
                    <exon start="34178" stop="34322"/>
                    <exon start="35168" stop="35218"/>
                    <exon start="36807" stop="36912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMSSNSKLMPNLDERSTKMLNLTVLQRIDPRIEEILITAAHVTLYEFNVDLNQWSRKEVEGSFFVVKRSAQPRFQFIVMNRRSAENMVEDLLGDFEFEVQVPYLLYRNAAQEVNGIWFYNAHEIEEVADLFGRILGEYSKVPLKPQLRKSEFADHEVVPMSTAIEGTSGPAFTTSTDGFGADDSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31229" e_stop="31512"/>
            <exon e_start="32577" e_stop="32617"/>
            <exon e_start="33962" e_stop="34011"/>
            <exon e_start="34175" e_stop="34322"/>
            <exon e_start="35168" e_stop="35218"/>
            <exon e_start="36807" e_stop="36925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.991" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.559" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="31229" e_stop="31512" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.991">
            <gDNA_intron_boundary i_start="31513" i_stop="32576" i_length="1064"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32577" e_stop="32617" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="32618" i_stop="33961" i_length="1344"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33962" e_stop="34011" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.559">
            <gDNA_intron_boundary i_start="34012" i_stop="34174" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34175" e_stop="34322" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.979">
            <gDNA_intron_boundary i_start="34323" i_stop="35167" i_length="845"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35168" e_stop="35218" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.932" acc_prob="1.000">
            <gDNA_intron_boundary i_start="35219" i_stop="36806" i_length="1588"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36807" e_stop="36925" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31229" stop="31512"/>
              <exon start="32577" stop="32617"/>
              <exon start="33962" stop="34011"/>
              <exon start="34175" stop="34322"/>
              <exon start="35168" stop="35218"/>
              <exon start="36807" stop="36925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31231" stop="31512"/>
              <exon start="32577" stop="32617"/>
              <exon start="33962" stop="34001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATACTTTTCCCACTCCACTCTCTACTTCTCCATATTTTCTTCTCCGATCGACAAATCGATTCTCCGGTTCTCTCTATAATCTATCTGCTTCTGTACGATCAATCGGAAAGTTCTAGAAGAAGATGTCGTCGAATTCAAAGTTAATGCCGAATCTGGATGAGCGAAGTACGAAGATGCTAAACCTCACTGTGCTACAGAGAATCGATCCGCGTATTGAGGAGATCCTCATCACAGCTGCTCATGTTACGTTGTACGAGTTCAACGTCGACCTCAATCAATGG : AGCCGCAAGGAGGTTGAAGGTTCTTTCTTTGTAGTTAAGAG : GAGTGCTCAGCCAAGGTTCCAGTTCATTGTTATGAACCGCAGGAGTGCAG : CAGAAAATATGGTGGAAGATCTCTTGGGAGACTTTGAGTTTGAGGTTCAGGTTCCATACTTGTTGTATCGCAATGCAGCCCAAGAAGTCAATGGTATTTGGTTTTACAATGCACATGAAATTGAGGAGGTTGCAGATCTCTTCGGCAG : AATTTTAGGTGAATACTCAAAGGTTCCCCTGAAGCCACAGCTAAGAAAAAG : TGAGTTTGCAGATCATGAGGTGGTCCCAATGAGTACAGCAATAGAAGGGACATCTGGACCAGCATTTACCACCTCTACGGATGGGTTTGGTGCTGATGATTCTTCCTTTATGAACTTTT</gDNA_template>
            <first_frame> K  I  L  F  P  L  H  S  L  L  L  H  I  F  F  S  D  R  Q  I  D  S  P  V  L  S  I  I  Y  L  L  L  Y  D  Q  S  E  S  S  R  R  R  C  R  R  I  Q  S  *  C  R  I  W  M  S  E  V  R  R  C  *  T  S  L  C  Y  R  E  S  I  R  V  L  R  R  S  S  S  Q  L  L  M  L  R  C  T  S  S  T  S  T  S  I  N  G :   A  A  R  R  L  K  V  L  S  L  *  L  R   : G  V  L  S  Q  G  S  S  S  L  L  *  T  A  G  V  Q  :  Q  K  I  W  W  K  I  S  W  E  T  L  S  L  R  F  R  F  H  T  C  C  I  A  M  Q  P  K  K  S  M  V  F  G  F  T  M  H  M  K  L  R  R  L  Q  I  S  S  A   : E  F  *  V  N  T  Q  R  F  P  *  S  H  S  *  E  K   : V  S  L  Q  I  M  R  W  S  Q  *  V  Q  Q  *  K  G  H  L  D  Q  H  L  P  P  L  R  M  G  L  V  L  M  I  L  P  L  *  T  F </first_frame>
            <second_frame>  K  Y  F  S  H  S  T  L  Y  F  S  I  F  S  S  P  I  D  K  S  I  L  R  F  S  L  *  S  I  C  F  C  T  I  N  R  K  V  L  E  E  D  V  V  E  F  K  V  N  A  E  S  G  *  A  K  Y  E  D  A  K  P  H  C  A  T  E  N  R  S  A  Y  *  G  D  P  H  H  S  C  S  C  Y  V  V  R  V  Q  R  R  P  Q  S  M   : E  P  Q  G  G  *  R  F  F  L  C  S  *  E  :  E  C  S  A  K  V  P  V  H  C  Y  E  P  Q  E  C  S :   R  K  Y  G  G  R  S  L  G  R  L  *  V  *  G  S  G  S  I  L  V  V  S  Q  C  S  P  R  S  Q  W  Y  L  V  L  Q  C  T  *  N  *  G  G  C  R  S  L  R  Q  :  N  F  R  *  I  L  K  G  S  P  E  A  T  A  K  K  K  :  *  V  C  R  S  *  G  G  P  N  E  Y  S  N  R  R  D  I  W  T  S  I  Y  H  L  Y  G  W  V  W  C  *  *  F  F  L  Y  E  L   </second_frame>
            <third_frame>   N  T  F  P  T  P  L  S  T  S  P  Y  F  L  L  R  S  T  N  R  F  S  G  S  L  Y  N  L  S  A  S  V  R  S  I  G  K  F  *  K  K  M  S  S  N  S  K  L  M  P  N  L  D  E  R  S  T  K  M  L  N  L  T  V  L  Q  R  I  D  P  R  I  E  E  I  L  I  T  A  A  H  V  T  L  Y  E  F  N  V  D  L  N  Q  W  :  S  R  K  E  V  E  G  S  F  F  V  V  K  R :   S  A  Q  P  R  F  Q  F  I  V  M  N  R  R  S  A   : A  E  N  M  V  E  D  L  L  G  D  F  E  F  E  V  Q  V  P  Y  L  L  Y  R  N  A  A  Q  E  V  N  G  I  W  F  Y  N  A  H  E  I  E  E  V  A  D  L  F  G  R :   I  L  G  E  Y  S  K  V  P  L  K  P  Q  L  R  K  S :   E  F  A  D  H  E  V  V  P  M  S  T  A  I  E  G  T  S  G  P  A  F  T  T  S  T  D  G  F  G  A  D  D  S  S  F  M  N  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31348" stop="31512"/>
                    <exon start="32577" stop="32617"/>
                    <exon start="33962" stop="34011"/>
                    <exon start="34175" stop="34322"/>
                    <exon start="35168" stop="35218"/>
                    <exon start="36807" stop="36924"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMSSNSKLMPNLDERSTKMLNLTVLQRIDPRIEEILITAAHVTLYEFNVDLNQWSRKEVEGSFFVVKRSAQPRFQFIVMNRRSAAENMVEDLLGDFEFEVQVPYLLYRNAAQEVNGIWFYNAHEIEEVADLFGRILGEYSKVPLKPQLRKSEFADHEVVPMSTAIEGTSGPAFTTSTDGFGADDSSFMNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37955" PGL_stop="39584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37955" e_stop="38302"/>
            <exon e_start="39291" e_stop="39584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.883" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="37955" e_stop="38302" e_length="348"/>
          </exon>
          <intron i_serial="1" don_prob="0.883" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38303" i_stop="39290" i_length="988"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="39291" e_stop="39584" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37955" stop="38302"/>
              <exon start="39291" stop="39584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368987" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37979" stop="38302"/>
              <exon start="39291" stop="39584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369682" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGCAAGTCTCATTACCTGTTCAGTCAGCTCCATCACCTCCTCGACAGTCACGCCGCGATTCTGCTAACCTGATCAATAGTACTAATTACCCTGCAAATCTTGTGAAGCCTTCTTTCTTTACACCCCCTGTGTCACCTGTATTGGTGACAACTTCTGTCTCCTCAGCTACATCAACTCCCGTCCTTTATCCTCATGTGAATCCACAACGCCCACATGGTACACTTCTAGTTCAACCCTTCCGAACACCTACTTCGCCTCCATTTCTCACTTCTACTCAGATTCCTCCACAAAGTGTGACACTAAGCAGAGAGAAGGTTCAAGACGTGCTTCTAATGCTTGTTCAG : GACAATCAGTTTATCGACTTGGTCTACCAAAAGTTGCTTAAAGCACATTCATGATTCCGTGAGAAGTGTGGTGATGTTGTAGATCTTGATACCATGTAAAAGTAGTTTGTACATATTTGTTTCTTCTGCTGGGGATTGGACTTACCTTCTTTTCACCTCACGAAGAGATCGACTACACCTATGACTTGATGTAATATATGAAACTTGGACAATCCTGATGAAAGTCTATGAACAATTGAATATCGACAATGGCAAACCTTTTAAACATTTCTGTAAATTCTATGCACAGTTCTG</gDNA_template>
            <first_frame> I  L  Q  V  S  L  P  V  Q  S  A  P  S  P  P  R  Q  S  R  R  D  S  A  N  L  I  N  S  T  N  Y  P  A  N  L  V  K  P  S  F  F  T  P  P  V  S  P  V  L  V  T  T  S  V  S  S  A  T  S  T  P  V  L  Y  P  H  V  N  P  Q  R  P  H  G  T  L  L  V  Q  P  F  R  T  P  T  S  P  P  F  L  T  S  T  Q  I  P  P  Q  S  V  T  L  S  R  E  K  V  Q  D  V  L  L  M  L  V  Q  :  D  N  Q  F  I  D  L  V  Y  Q  K  L  L  K  A  H  S  *  F  R  E  K  C  G  D  V  V  D  L  D  T  M  *  K  *  F  V  H  I  C  F  F  C  W  G  L  D  L  P  S  F  H  L  T  K  R  S  T  T  P  M  T  *  C  N  I  *  N  L  D  N  P  D  E  S  L  *  T  I  E  Y  R  Q  W  Q  T  F  *  T  F  L  *  I  L  C  T  V  L </first_frame>
            <second_frame>  F  C  K  S  H  Y  L  F  S  Q  L  H  H  L  L  D  S  H  A  A  I  L  L  T  *  S  I  V  L  I  T  L  Q  I  L  *  S  L  L  S  L  H  P  L  C  H  L  Y  W  *  Q  L  L  S  P  Q  L  H  Q  L  P  S  F  I  L  M  *  I  H  N  A  H  M  V  H  F  *  F  N  P  S  E  H  L  L  R  L  H  F  S  L  L  L  R  F  L  H  K  V  *  H  *  A  E  R  R  F  K  T  C  F  *  C  L  F  R :   T  I  S  L  S  T  W  S  T  K  S  C  L  K  H  I  H  D  S  V  R  S  V  V  M  L  *  I  L  I  P  C  K  S  S  L  Y  I  F  V  S  S  A  G  D  W  T  Y  L  L  F  T  S  R  R  D  R  L  H  L  *  L  D  V  I  Y  E  T  W  T  I  L  M  K  V  Y  E  Q  L  N  I  D  N  G  K  P  F  K  H  F  C  K  F  Y  A  Q  F   </second_frame>
            <third_frame>   F  A  S  L  I  T  C  S  V  S  S  I  T  S  S  T  V  T  P  R  F  C  *  P  D  Q  *  Y  *  L  P  C  K  S  C  E  A  F  F  L  Y  T  P  C  V  T  C  I  G  D  N  F  C  L  L  S  Y  I  N  S  R  P  L  S  S  C  E  S  T  T  P  T  W  Y  T  S  S  S  T  L  P  N  T  Y  F  A  S  I  S  H  F  Y  S  D  S  S  T  K  C  D  T  K  Q  R  E  G  S  R  R  A  S  N  A  C  S   : G  Q  S  V  Y  R  L  G  L  P  K  V  A  *  S  T  F  M  I  P  *  E  V  W  *  C  C  R  S  *  Y  H  V  K  V  V  C  T  Y  L  F  L  L  L  G  I  G  L  T  F  F  S  P  H  E  E  I  D  Y  T  Y  D  L  M  *  Y  M  K  L  G  Q  S  *  *  K  S  M  N  N  *  I  S  T  M  A  N  L  L  N  I  S  V  N  S  M  H  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0191P09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37955" stop="38302"/>
                    <exon start="39291" stop="39344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILQVSLPVQSAPSPPRQSRRDSANLINSTNYPANLVKPSFFTPPVSPVLVTTSVSSATSTPVLYPHVNPQRPHGTLLVQPFRTPTSPPFLTSTQIPPQSVTLSREKVQDVLLMLVQDNQFIDLVYQKLLKAHS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 228 chains have been computed
$ 
$ memory statistics:
$ 265456 bytes spliced alignments in total
$ 134 spliced alignments have been stored
$ 1981 bytes was the average size of a spliced alignment
$ 16096 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 2299 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 269 backtrace matrices have been allocated
$ 
$ date finished: 2008-03-22 22:02:28
-->
